RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17868
(208 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.6 bits (94), Expect = 2e-04
Identities = 28/174 (16%), Positives = 52/174 (29%), Gaps = 68/174 (39%)
Query: 33 NHFMTFL-HHLVFMCDKLLSSQEKDQLNSLYSGVEILD--FIENKF-HVQSP--CRSHFV 86
+F + + HHL + + ++ LD F+E K H + +
Sbjct: 471 QYFYSHIGHHL----KNIEHPERMTLFRMVF-----LDFRFLEQKIRHDSTAWNASGSIL 521
Query: 87 N-LNKGSKYEEESEGKFFQEEMSSVKKQVAKDLMEDILDNCLSSQEKDQLNSLYSGVEIL 145
N L + Y+ + I DN + +N+ IL
Sbjct: 522 NTLQQLKFYK-----PY-------------------ICDNDPKYERL--VNA------IL 549
Query: 146 DFIENKFHVQSSCRSHFVNL------NKGSKYEEESEGKFFQEEMSSVKKQVAK 193
DF+ ++ S + +L + EE+ KQV +
Sbjct: 550 DFLPK--IEENLICSKYTDLLRIALMAEDEAIFEEAH------------KQVQR 589
Score = 33.3 bits (75), Expect = 0.062
Identities = 29/261 (11%), Positives = 73/261 (27%), Gaps = 102/261 (39%)
Query: 27 WVSMKHNH----FMTFLHHLVFMCDKLLSSQE-------------KDQLNSLYSGVE--- 66
W+++K+ + + L L++ D +S+ + +L L
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 67 ---ILDFIENKFHVQS---PCR-------------------SHF-VNLNKGSKYEEESEG 100
+L ++N + C+ +H ++ + + +E +
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 101 KFFQ----------EEMSSVK---------------------KQVAKDLMEDILDNCLSS 129
+ E+ + K V D + I+++ L+
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 130 QEKDQLNSLYSGVEILDFIENKFHVQSSCRSHFVNL---------NKGSKYEEESEGKFF 180
E + ++ + + F + ++ K +
Sbjct: 366 LEPAEYRKMFDRLSV--FPPS------------AHIPTILLSLIWFDVIKSDVMVVVNKL 411
Query: 181 QEEMSSVKKQVAKDLTEDILD 201
+ S V+KQ K+ T I
Sbjct: 412 HKY-SLVEKQ-PKESTISIPS 430
Score = 32.1 bits (72), Expect = 0.12
Identities = 18/121 (14%), Positives = 43/121 (35%), Gaps = 20/121 (16%)
Query: 96 EESEGKF-FQEEMSSVKKQVAKDL----MEDILDNCLSSQEKDQLNSLYSGVE----ILD 146
E E ++ +++ +S + + ++D+ + LS +E D + V +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 147 FIENKFHVQSSCRSHFVNLNKGSKYEEESEGKFFQEEMSSVKKQVAKDLT--EDILDNCF 204
+ +K Q FV Y+ F + + ++Q + + D +
Sbjct: 70 TLLSK---QEEMVQKFVEEVLRINYK------FLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 205 N 205
N
Sbjct: 121 N 121
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.052
Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 24/95 (25%)
Query: 2 AARGLLKNP-------GLFSGANR-------------TPMSCIEEWVSMKHNHFMTFLHH 41
AR + K P LF EE + + + +
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL-YQTYHVLVGD 186
Query: 42 LVFMCDKLLS--SQEKDQLNSLYS-GVEILDFIEN 73
L+ + LS + +++ G+ IL+++EN
Sbjct: 187 LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221
Score = 32.7 bits (74), Expect = 0.080
Identities = 28/184 (15%), Positives = 55/184 (29%), Gaps = 69/184 (37%)
Query: 20 PMSCIEEWVSMKHNHFMTFLHHLVFMCDKLLSSQEKDQLNSLYSGVEILDFIENKF---- 75
P + E F+ ++ LV + Q LN L EN +
Sbjct: 54 PTTPAELVG-----KFLGYVSSLV---EPSKVGQFDQVLNLC------LTEFENCYLEGN 99
Query: 76 --H----------------VQSPCRSHF---VNLNKGSKYEEES-------EGK------ 101
H + +++ + + + S EG
Sbjct: 100 DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI 159
Query: 102 F---------FQE--EMSSVKKQVAKDLME---DILDNCLSSQEKDQLNSLYS-GVEILD 146
F F+E ++ + DL++ + L L D +++ G+ IL+
Sbjct: 160 FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSE-LIRTTLDA-EKVFTQGLNILE 217
Query: 147 FIEN 150
++EN
Sbjct: 218 WLEN 221
Score = 31.9 bits (72), Expect = 0.16
Identities = 21/118 (17%), Positives = 37/118 (31%), Gaps = 40/118 (33%)
Query: 104 QEE-MSSVKKQVAKDLME------DILDNCLSSQEKDQLNSLYSGVEILDFIENK----- 151
QE+ M DL + D+ + + Y G ILD + N
Sbjct: 1627 QEQGM-------GMDLYKTSKAAQDVWNRA-----DNHFKDTY-GFSILDIVINNPVNLT 1673
Query: 152 --FHVQSSC--RSHFVNLNKGSKYEEESEGKFFQEEMSSVKKQVAKDLTEDILDNCFN 205
F + R ++ + +E +GK E+ + K++ E F
Sbjct: 1674 IHFGGEKGKRIRENYSAM----IFETIVDGKLKTEK-------IFKEINEHSTSYTFR 1720
Score = 27.3 bits (60), Expect = 4.6
Identities = 18/87 (20%), Positives = 28/87 (32%), Gaps = 24/87 (27%)
Query: 39 LHHLVFMCDKLLSSQEKDQLNSLYSGVEILDFIENKF-HVQSPCRSHFVNLNKGSKYEEE 97
L+ L K + DQ +S L F N+F V SP H S
Sbjct: 386 LYGLNLTLRKAKAPSGLDQSRIPFSE-RKLKF-SNRFLPVASPF--H-------SHL--- 431
Query: 98 SEGKFFQEEMSSVKKQVAKDLMEDILD 124
+ + KDL+++ +
Sbjct: 432 ---------LVPASDLINKDLVKNNVS 449
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination,
hydrolase-recombination complex; 2.00A {Sulfolobus
solfataricus} SCOP: c.37.1.19
Length = 271
Score = 26.8 bits (60), Expect = 5.5
Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 28/107 (26%)
Query: 111 KKQVAKDL---MEDILDNCLSSQEKD----QLNSLYSGVEILDFIENKFHV--------Q 155
+A DL +E + L+ ++ ++ +L++ ++ + I+ K + Q
Sbjct: 18 GSHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQ 77
Query: 156 SSCRSHFVNLNKGSKYEEESEGKFFQEEMSSVKKQVAKDLTEDILDN 202
H L G + S GK ++ E+ LD
Sbjct: 78 IVD--HPALLKGGEQSVRRS-GKM----------IRTMEIIEEALDE 111
>3llk_A Sulfhydryl oxidase 1; disulfide, flavin adenine dinucleotide,
alternative splicing, FAD, flavoprotein, glycoprotein,
GOLG apparatus, membrane; HET: FAD FLC; 2.00A {Homo
sapiens} PDB: 3lli_A*
Length = 261
Score = 26.6 bits (58), Expect = 6.3
Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 1/62 (1%)
Query: 37 TFLHHLVFMCDKLLSSQEKDQLNSLYSGVEILDFIENKFHVQSPCRSHFVNLNKGSKYEE 96
H L + ++ + I ++ F + C SHF + S +
Sbjct: 124 VLFHFLTVQAARQNVDHSQEAAKAKEVLPAIRGYVHYFFGCRD-CASHFEQMAAASMHRV 182
Query: 97 ES 98
S
Sbjct: 183 GS 184
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.378
Gapped
Lambda K H
0.267 0.0569 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,997,897
Number of extensions: 157556
Number of successful extensions: 329
Number of sequences better than 10.0: 1
Number of HSP's gapped: 325
Number of HSP's successfully gapped: 21
Length of query: 208
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 119
Effective length of database: 4,216,824
Effective search space: 501802056
Effective search space used: 501802056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.3 bits)