RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17868
         (208 letters)



>d1sgoa_ d.82.3.1 (A:) Hypothetical protein c14orf129, hspc210
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 139

 Score = 29.8 bits (67), Expect = 0.12
 Identities = 16/100 (16%), Positives = 41/100 (41%), Gaps = 6/100 (6%)

Query: 86  VNLNKGSKYEEESEGKFFQEEMSSVKKQVAKDLMEDIL----DNCLSSQEKDQLNSLYSG 141
           + L+  S +EE SE   F+       +  A+ ++ D+L    +  +S   +   +  Y  
Sbjct: 8   MELSSMSGFEEGSELNGFEGTDMKDMRLEAEAVVNDVLFAVNNMFVSKSLRCADDVAYIN 67

Query: 142 VEILDFIENKFHVQSSCRSHFVNLNKGSKYEEESEGKFFQ 181
           VE  +   N++ ++ +     V      + ++  +  + +
Sbjct: 68  VETKE--RNRYCLELTEAGLKVVGYAFDQVDDHLQTPYHE 105


>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC
           {Streptococcus pyogenes [TaxId: 1314]}
          Length = 152

 Score = 25.0 bits (53), Expect = 5.3
 Identities = 11/129 (8%), Positives = 33/129 (25%), Gaps = 9/129 (6%)

Query: 3   ARGLLKNPGLFSGANRTPMS-----CIEEWVSMKHNHFMTFLHHLVFMCDKLLSSQEKDQ 57
            +GL + P     +  +                  +  +     LV +  K    +   +
Sbjct: 16  IKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIKPQLFETVLK 75

Query: 58  LNSLYSGVEILDFIENKFHVQS----PCRSHFVNLNKGSKYEEESEGKFFQEEMSSVKKQ 113
                  +  +    +   + +          +  N  ++  + S        +S   + 
Sbjct: 76  PLHFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNAQILQSSTALTGNALVSQELQA 135

Query: 114 VAKDLMEDI 122
             +DL +  
Sbjct: 136 RVRDLTDSF 144


>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 959

 Score = 25.7 bits (55), Expect = 5.9
 Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 102 FFQEEMSSVKKQVAKDLMEDILDNCLSSQEKDQLNSLYSG 141
           +  E ++          +  IL   L+ + + +LN L  G
Sbjct: 921 YVAEALNKYNAISGNTFLNTILPQ-LTQENQVKLNQLLVG 959


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.132    0.378 

Gapped
Lambda     K      H
   0.267   0.0444    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 741,142
Number of extensions: 32230
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 7
Length of query: 208
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 127
Effective length of database: 1,295,466
Effective search space: 164524182
Effective search space used: 164524182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.1 bits)