BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17870
(406 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 84/153 (54%), Gaps = 4/153 (2%)
Query: 174 GKKGAIYFSLGSNVKSAALEDSKRTAILAALARFPDYRIIWKWENEELEGLPSNVICRKW 233
G+ G + FSLGS V + E + I +ALA+ P +++W+++ + + L N KW
Sbjct: 19 GENGVVVFSLGSXVSNXTEE--RANVIASALAQIPQ-KVLWRFDGNKPDTLGLNTRLYKW 75
Query: 234 LPQHDLLAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYME 293
+PQ+DLL HP + FIT GG + EA++ +P +GIP F DQ N+ + G ++
Sbjct: 76 IPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDNIAHXKARGAAVRVD 135
Query: 294 FEDIHTETLFENIQEILNNYDRYKKAVKRASDI 326
F + L ++ ++N+ YK+ V + S I
Sbjct: 136 FNTXSSTDLLNALKRVIND-PSYKENVXKLSRI 167
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 82 TKPLPQDLAKWVEG-GKKGAIYFSLGSNVKSAALEDSKRTAILAALARFPDYRIIWKWEN 140
KPLP++ +V+ G+ G + FSLGS V + E + I +ALA+ P +++W+++
Sbjct: 4 AKPLPKEXEDFVQSSGENGVVVFSLGSXVSNXTEE--RANVIASALAQIPQ-KVLWRFDG 60
Query: 141 EELEGLPSNVICRKWLPQHDLLGTVDLAKWVEGGKKGAIYFSL 183
+ + L N KW+PQ+DLLG ++ G IY ++
Sbjct: 61 NKPDTLGLNTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAI 103
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 64/149 (42%), Gaps = 29/149 (19%)
Query: 152 CRKWLPQHDLLGTVDLAKWVEGGKKGAIYFSLGSNVKSAALEDSKRTAILAALARFPDYR 211
C +WL QH+ +Y S GS V E TA+ +L +
Sbjct: 263 CLEWLDQHE--------------NSSVVYISFGSVVTPPPHE---LTALAESLEEC-GFP 304
Query: 212 IIWKWENEELEGLPSNVICRK--------WLPQHDLLAHPNIKLFITQGGLQSLQEAVHF 263
IW + + E LP + R W PQ ++L H ++ +F+T G S+ E +
Sbjct: 305 FIWSFRGDPKEKLPKGFLERTKTKGKIVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVG 364
Query: 264 EVPVIGIPFFGDQNYNVKI---IRRLGIG 289
VP+I PFFGDQ N + + +G+G
Sbjct: 365 GVPMISRPFFGDQGLNTILTESVLEIGVG 393
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 220 ELEGLPSNVICRKWLPQHDLLAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYN 279
+L +P NV +W+PQ D+L FIT G+ S EA+ VP++ +P +Q N
Sbjct: 299 DLGEVPPNVEVHQWVPQLDILT--KASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMN 356
Query: 280 VKIIRRLGIGSYMEFEDIHTETLFENIQEILNN 312
+ I LG+G ++ + + E L E + + ++
Sbjct: 357 AERIVELGLGRHIPRDQVTAEKLREAVLAVASD 389
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 70/176 (39%), Gaps = 27/176 (15%)
Query: 146 LPSNVICRKWLPQHDLLGTVDLAKWVEGGKKGAIYFSLGSNVKSAALEDSKRTAILAALA 205
+P+ C +WL + +Y S G+ E + L A +
Sbjct: 255 VPNTTGCLQWLKERK--------------PTSVVYISFGTVTTPPPAEVVALSEALEA-S 299
Query: 206 RFPDYRIIWKWENEELEGLPSNVICRK--------WLPQHDLLAHPNIKLFITQGGLQSL 257
R P IW ++ LP + + W PQ ++LAH + F+T G SL
Sbjct: 300 RVP---FIWSLRDKARVHLPEGFLEKTRGYGMVVPWAPQAEVLAHEAVGAFVTHCGWNSL 356
Query: 258 QEAVHFEVPVIGIPFFGDQNYNVKIIRR-LGIGSYMEFEDIHTETLFENIQEILNN 312
E+V VP+I PFFGDQ N +++ L IG +E L +IL+
Sbjct: 357 WESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFTKSGLMSCFDQILSQ 412
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 233 WLPQHDLLAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVK-IIRRLGIGSY 291
W PQ +L HP+I F+T G S E++ VP++ PFF DQ + + I IG
Sbjct: 360 WCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIG-- 417
Query: 292 MEFE-DIHTETLFENIQEILNNYDRYKKAVKRASDISK 328
ME + ++ E L + I E++ D+ KK ++A ++ K
Sbjct: 418 MEIDTNVKREELAKLINEVIAG-DKGKKMKQKAMELKK 454
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 14/124 (11%)
Query: 220 ELEGLPSNVICRKWLPQHDLLAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYN 279
EL LP NV W+PQ +L + LF+T G QE + P+I +P DQ N
Sbjct: 277 ELGELPDNVEVHDWVPQLAILRQAD--LFVTHAGAGGSQEGLATATPMIAVPQAVDQFGN 334
Query: 280 VKIIRRLGIGSYMEFEDIHTETLFENIQEILNNYDRYKK------------AVKRASDIS 327
+++ LG+ + E+ + L E ++++ + ++ +RA+D+
Sbjct: 335 ADMLQGLGVARKLATEEATADLLRETALALVDDPEVARRLRRIQAEMAQEGGTRRAADLI 394
Query: 328 KTQM 331
+ ++
Sbjct: 395 EAEL 398
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 88/195 (45%), Gaps = 31/195 (15%)
Query: 158 QHDLLGTVDLAKWV-EGGKKGAIYFSLGSNVKSAALEDSKRTAILAALARFPDYRIIWKW 216
QHDL+ KW+ E K ++ GS + S+ I L + R +W
Sbjct: 262 QHDLI-----LKWLDEQPDKSVVFLCFGS--MGVSFGPSQIREIALGL-KHSGVRFLWSN 313
Query: 217 ENE------------ELEGLPSNVICRKWLPQHDLLAHPNIKLFITQGGLQSLQEAVHFE 264
E ELEG +IC W PQ ++LAH I F++ G S+ E++ F
Sbjct: 314 SAEKKVFPEGFLEWMELEG--KGMIC-GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFG 370
Query: 265 VPVIGIPFFGDQNYNV-KIIRRLGIG-----SYMEFED-IHTETLFENIQEILNNYDRYK 317
VP++ P + +Q N ++++ G+G Y + D + E + + ++++++
Sbjct: 371 VPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVH 430
Query: 318 KAVKRASDISKTQMM 332
K V+ ++S+ ++
Sbjct: 431 KKVQEMKEMSRNAVV 445
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 88/195 (45%), Gaps = 31/195 (15%)
Query: 158 QHDLLGTVDLAKWV-EGGKKGAIYFSLGSNVKSAALEDSKRTAILAALARFPDYRIIWKW 216
QHDL+ KW+ E K ++ GS + S+ I L + R +W
Sbjct: 262 QHDLI-----LKWLDEQPDKSVVFLCFGS--MGVSFGPSQIREIALGL-KHSGVRFLWSN 313
Query: 217 ENE------------ELEGLPSNVICRKWLPQHDLLAHPNIKLFITQGGLQSLQEAVHFE 264
E ELEG +IC W PQ ++LAH I F++ G S+ E++ F
Sbjct: 314 SAEKKVFPEGFLEWMELEG--KGMIC-GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFG 370
Query: 265 VPVIGIPFFGDQNYNV-KIIRRLGIG-----SYMEFED-IHTETLFENIQEILNNYDRYK 317
VP++ P + +Q N ++++ G+G Y + D + E + + ++++++
Sbjct: 371 VPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVH 430
Query: 318 KAVKRASDISKTQMM 332
K V+ ++S+ ++
Sbjct: 431 KKVQEMKEMSRNAVV 445
>pdb|2YJN|A Chain A, Structure Of The Glycosyltransferase Eryciii From The
Erythromycin Biosynthetic Pathway, In Complex With Its
Activating Partner, Erycii
Length = 441
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 65/151 (43%), Gaps = 6/151 (3%)
Query: 179 IYFSLGSNVKSAALEDSKRTAILAALARFPDYRIIWKWENEELEG---LPSNVICRKWLP 235
+ +LG + + ++ +L A+ D II ++ ++LEG +P NV ++P
Sbjct: 270 VCLTLGISSRENSIGQVSIEELLGAVGDV-DAEIIATFDAQQLEGVANIPDNVRTVGFVP 328
Query: 236 QHDLLAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFE 295
H LL P + GG S A VP + +P D + + G G +
Sbjct: 329 MHALL--PTCAATVHHGGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIALPVP 386
Query: 296 DIHTETLFENIQEILNNYDRYKKAVKRASDI 326
++ + L E+++ +L++ A + D+
Sbjct: 387 ELTPDQLRESVKRVLDDPAHRAGAARMRDDM 417
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 224 LPSNVICRKWLPQHDLLAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNY-NVKI 282
LP NV +W+P H +LAH + +T G ++ EA VP++ +P F + + +
Sbjct: 279 LPPNVEAHQWIPFHSVLAH--ARACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAER 336
Query: 283 IRRLGIGSYMEFEDIHTETLFENIQEI 309
+ LG+GS + + + ++ E ++ +
Sbjct: 337 VIELGLGSVLRPDQLEPASIREAVERL 363
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 221 LEGLPSNVICRKWLPQHDLLAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNV 280
L LP NV +W+P +L + +T GG +L EA+++ P++ +P D
Sbjct: 292 LGDLPPNVEAHRWVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXA 349
Query: 281 KIIRRLGIGSYMEFEDIHTETLF 303
+ + +LG+G+ + E +TL
Sbjct: 350 RRVDQLGLGAVLPGEKADGDTLL 372
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 221 LEGLPSNVICRKWLPQHDLLAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNV 280
L LP NV +W+P +L + +T GG +L EA+++ P++ +P D
Sbjct: 292 LGDLPPNVEAHRWVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXA 349
Query: 281 KIIRRLGIGSYMEFEDIHTETLF 303
+ + +LG+G+ + E +TL
Sbjct: 350 RRVDQLGLGAVLPGEKADGDTLL 372
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 233 WLPQHDLLAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKII 283
W PQ +LAHP+ F+T G S E+V +P+I P + +Q N ++
Sbjct: 346 WAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLL 396
>pdb|4AMG|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMG|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|C Chain C, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|D Chain D, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 8/118 (6%)
Query: 225 PSNVICRKWLPQHDLLAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIR 284
P+NV +W+P LL I GG +L A+ VP IP Q+ N ++
Sbjct: 287 PANVRVVEWIPLGALLE--TCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLT 344
Query: 285 RLGIGSYMEFEDIHTETLFENIQEILNNYDRYKKAVKRASDISKTQMMSPRDTAVWWV 342
LGIG E + E + +L++ + A++ ++S +M P +TA V
Sbjct: 345 GLGIGFDAEAGSLGA----EQCRRLLDDAGLREAALRVRQEMS--EMPPPAETAAXLV 396
>pdb|4AMB|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMB|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 8/118 (6%)
Query: 225 PSNVICRKWLPQHDLLAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIR 284
P+NV +W+P LL I GG +L A+ VP IP Q+ N ++
Sbjct: 287 PANVRVVEWIPLGALLE--TCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLT 344
Query: 285 RLGIGSYMEFEDIHTETLFENIQEILNNYDRYKKAVKRASDISKTQMMSPRDTAVWWV 342
LGIG E + E + +L++ + A++ ++S +M P +TA V
Sbjct: 345 GLGIGFDAEAGSLGA----EQCRRLLDDAGLREAALRVRQEMS--EMPPPAETAAKLV 396
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 8/101 (7%)
Query: 179 IYFSLGSNVKSAALEDSKRTAILAALARFPDYRIIWKWENEELEGL---PSNVICRKWLP 235
+Y +LG++ S + R AI LA ++ + ++ GL P+NV W+P
Sbjct: 245 VYLTLGTS--SGGTVEVLRAAI-DGLAGLDADVLVASGPSLDVSGLGEVPANVRLESWVP 301
Query: 236 QHDLLAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQ 276
Q LL P++ L + GG + A+ VP + P+ GD
Sbjct: 302 QAALL--PHVDLVVHHGGSGTTLGALGAGVPQLSFPWAGDS 340
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 14/114 (12%)
Query: 83 KPLP----QDLAKWVEG--GKKGAIYFSLGSNVKSAALEDSKRTAILAALARFPDYRIIW 136
+P+P DL W+ + +Y +LG++ S + R AI LA ++
Sbjct: 221 RPVPFAEQGDLPAWLSSRDTARPLVYLTLGTS--SGGTVEVLRAAI-DGLAGLDADVLVA 277
Query: 137 KWENEELEGL---PSNVICRKWLPQHDLLGTVDLAKWVEGGKKGAIYFSLGSNV 187
+ ++ GL P+NV W+PQ LL VDL V G G +LG+ V
Sbjct: 278 SGPSLDVSGLGEVPANVRLESWVPQAALLPHVDLV--VHHGGSGTTLGALGAGV 329
>pdb|2O1T|A Chain A, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|B Chain B, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|C Chain C, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|D Chain D, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|E Chain E, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|F Chain F, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|G Chain G, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|H Chain H, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|I Chain I, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|J Chain J, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
Length = 450
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 11/74 (14%)
Query: 144 EGLPSNVICRKWLPQHDLLG---------TVDLAKWVEGGKKGAIYF-SLGSNVKSAALE 193
+ LP NV R+ L QH LL T+D+ K + K ++ G+N+K +E
Sbjct: 125 DDLPLNV-SRETLQQHKLLKVIRKKLVRKTLDMIKKIADEKYNDTFWKEFGTNIKLGVIE 183
Query: 194 DSKRTAILAALARF 207
D LA L RF
Sbjct: 184 DHSNRTRLAKLLRF 197
>pdb|2O1W|A Chain A, Structure Of N-Terminal Plus Middle Domains (N+m) Of Grp94
pdb|2O1W|B Chain B, Structure Of N-Terminal Plus Middle Domains (N+m) Of Grp94
pdb|2O1W|C Chain C, Structure Of N-Terminal Plus Middle Domains (N+m) Of Grp94
pdb|2O1W|D Chain D, Structure Of N-Terminal Plus Middle Domains (N+m) Of Grp94
pdb|2O1W|E Chain E, Structure Of N-Terminal Plus Middle Domains (N+m) Of Grp94
Length = 506
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 11/74 (14%)
Query: 144 EGLPSNVICRKWLPQHDLLG---------TVDLAKWVEGGKKGAIYF-SLGSNVKSAALE 193
+ LP NV R+ L QH LL T+D+ K + K ++ G+N+K +E
Sbjct: 352 DDLPLNV-SRETLQQHKLLKVIRKKLVRKTLDMIKKIADEKYNDTFWKEFGTNIKLGVIE 410
Query: 194 DSKRTAILAALARF 207
D LA L RF
Sbjct: 411 DHSNRTRLAKLLRF 424
>pdb|2O1U|A Chain A, Structure Of Full Length Grp94 With Amp-Pnp Bound
pdb|2O1U|B Chain B, Structure Of Full Length Grp94 With Amp-Pnp Bound
pdb|2O1V|A Chain A, Structure Of Full Length Grp94 With Adp Bound
pdb|2O1V|B Chain B, Structure Of Full Length Grp94 With Adp Bound
Length = 666
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 11/74 (14%)
Query: 144 EGLPSNVICRKWLPQHDLLG---------TVDLAKWVEGGKKGAIYF-SLGSNVKSAALE 193
+ LP NV R+ L QH LL T+D+ K + K ++ G+N+K +E
Sbjct: 352 DDLPLNV-SRETLQQHKLLKVIRKKLVRKTLDMIKKIADEKYNDTFWKEFGTNIKLGVIE 410
Query: 194 DSKRTAILAALARF 207
D LA L RF
Sbjct: 411 DHSNRTRLAKLLRF 424
>pdb|3HWC|A Chain A, Crystal Structure Of Chlorophenol 4-Monooxygenase (Tftd)
Of Burkholderia Cepacia Ac1100
pdb|3HWC|B Chain B, Crystal Structure Of Chlorophenol 4-Monooxygenase (Tftd)
Of Burkholderia Cepacia Ac1100
pdb|3HWC|C Chain C, Crystal Structure Of Chlorophenol 4-Monooxygenase (Tftd)
Of Burkholderia Cepacia Ac1100
pdb|3HWC|D Chain D, Crystal Structure Of Chlorophenol 4-Monooxygenase (Tftd)
Of Burkholderia Cepacia Ac1100
Length = 515
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/103 (20%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Query: 204 LARFPDYRIIWKWENEELEGLPSNVICRKWLPQ----HDLLAHPNIKLFITQGGLQSLQE 259
L D R++W NE+++ + ++ + R + + +DL P+++ +T ++
Sbjct: 8 LESLNDGRVVWVG-NEKIDNVATHPLTRDYAERVAQFYDLHHRPDLQDVLTFVDADGVRR 66
Query: 260 AVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETL 302
+ ++ P + Y+ I+R + GSY D H T
Sbjct: 67 SRQWQDPKDAAGLRVKRKYHETILREIAAGSYGRLPDAHNYTF 109
>pdb|1CEC|A Chain A, A Common Protein Fold And Similar Active Site In Two
Distinct Families Of Beta-Glycanases
Length = 343
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/96 (20%), Positives = 42/96 (43%), Gaps = 23/96 (23%)
Query: 233 WLPQHDLLAHPNIKLFITQGGLQSLQEA------VHFEVPVI------------GIPFFG 274
W+ Q+ + + + FIT+ ++++ EA + F+ P+I G+ +
Sbjct: 13 WISQYQVFSKEHFDTFITEKDIETIAEAGFDHVRLPFDYPIIESDDNVGEYKEDGLSYID 72
Query: 275 D-----QNYNVKIIRRLGIGSYMEFEDIHTETLFEN 305
+ YN+ ++ + F+D T TLFE+
Sbjct: 73 RCLEWCKKYNLGLVLDMHHAPGYRFQDFKTSTLFED 108
>pdb|1CEN|A Chain A, Cellulase (Celc) Mutant With Glu 140 Replaced By Gln
Complexed With Cellohexaose
pdb|1CEO|A Chain A, Cellulase (Celc) Mutant With Glu 140 Replaced By Gln
Length = 343
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/96 (20%), Positives = 42/96 (43%), Gaps = 23/96 (23%)
Query: 233 WLPQHDLLAHPNIKLFITQGGLQSLQEA------VHFEVPVI------------GIPFFG 274
W+ Q+ + + + FIT+ ++++ EA + F+ P+I G+ +
Sbjct: 13 WISQYQVFSKEHFDTFITEKDIETIAEAGFDHVRLPFDYPIIESDDNVGEYKEDGLSYID 72
Query: 275 D-----QNYNVKIIRRLGIGSYMEFEDIHTETLFEN 305
+ YN+ ++ + F+D T TLFE+
Sbjct: 73 RCLEWCKKYNLGLVLDMHHAPGYRFQDFKTSTLFED 108
>pdb|3UMV|A Chain A, Eukaryotic Class Ii Cpd Photolyase Structure Reveals A
Basis For Improved Uv-Tolerance In Plants
pdb|3UMV|B Chain B, Eukaryotic Class Ii Cpd Photolyase Structure Reveals A
Basis For Improved Uv-Tolerance In Plants
Length = 506
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 126 LARFPDYRIIWKWENEELEGLPSNVICRKWLPQHDLLGTVDLAKWVEGGKKGAIYFSLGS 185
L FP+ + W+ E+ EG+ + + + + + + +D W E G++ AI LGS
Sbjct: 200 LVEFPELPAVVPWDREQPEGVDWDALIARVCSEAENVPEID---WCEPGEEAAIEALLGS 256
Query: 186 N 186
Sbjct: 257 K 257
>pdb|2KAT|A Chain A, Solution Structure Of Protein Bpp2914 From Bordetella
Parapertussis. Northeast Structural Genomics Consortium
Target Bpr206
Length = 115
Score = 28.9 bits (63), Expect = 6.0, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 24/56 (42%)
Query: 90 AKWVEGGKKGAIYFSLGSNVKSAALEDSKRTAILAALARFPDYRIIWKWENEELEG 145
A +G + F+LG D+ + AAL P Y + WKW + L+G
Sbjct: 10 AMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQG 65
Score = 28.9 bits (63), Expect = 6.0, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 24/56 (42%)
Query: 168 AKWVEGGKKGAIYFSLGSNVKSAALEDSKRTAILAALARFPDYRIIWKWENEELEG 223
A +G + F+LG D+ + AAL P Y + WKW + L+G
Sbjct: 10 AMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQG 65
>pdb|2DR1|A Chain A, Crystal Structure Of The Ph1308 Protein From Pyrococcus
Horikoshii Ot3
pdb|2DR1|B Chain B, Crystal Structure Of The Ph1308 Protein From Pyrococcus
Horikoshii Ot3
Length = 386
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 285 RLGIGSYMEFEDIHTETLFENIQEILNNYDRYK 317
R+G YM+FEDI + + +N++E++N + K
Sbjct: 353 RIGHMGYMKFEDI--QEMLDNLREVINELKKQK 383
>pdb|1POW|A Chain A, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
pdb|1POW|B Chain B, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
Length = 585
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 156 LPQHDLLGTVDLAKWVEGGKKGAIYFSLGSNVKSAALEDSKRTAILAALARFPDYRIIWK 215
LP+ D+ L + + ++ IY+ +G+ LE +T + ++ +P I+
Sbjct: 186 LPEPDVQAVTRLTQTLLAAERPLIYYGIGARKAGKELEQLSKTLKIPLMSTYPAKGIVAD 245
Query: 216 WENEELEGLPSNVICRKWLPQHDLLAHPNIKLFI 249
L +N + +K P ++ LA ++ LF+
Sbjct: 246 RYPAYLGS--ANRVAQK--PANEALAQADVVLFV 275
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,606,090
Number of Sequences: 62578
Number of extensions: 557785
Number of successful extensions: 1170
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1136
Number of HSP's gapped (non-prelim): 54
length of query: 406
length of database: 14,973,337
effective HSP length: 101
effective length of query: 305
effective length of database: 8,652,959
effective search space: 2639152495
effective search space used: 2639152495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)