RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17870
(406 letters)
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD,
enzyme, nucleotide binding,
sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo
sapiens}
Length = 170
Score = 215 bits (550), Expect = 2e-69
Identities = 50/162 (30%), Positives = 93/162 (57%), Gaps = 5/162 (3%)
Query: 166 DLAKWVEG-GKKGAIYFSLGSNVKSAALEDSKRTAILAALARFPDYRIIWKWENEELEGL 224
++ +V+ G+ G + FSLGS V + + + + I +ALA+ P +++W+++ + + L
Sbjct: 10 EMEDFVQSSGENGVVVFSLGSMVSN--MTEERANVIASALAQIP-QKVLWRFDGNKPDTL 66
Query: 225 PSNVICRKWLPQHDLLAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIR 284
N KW+PQ+DLL HP + FIT GG + EA++ +P++GIP F DQ N+ ++
Sbjct: 67 GLNTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPMVGIPLFADQPDNIAHMK 126
Query: 285 RLGIGSYMEFEDIHTETLFENIQEILNNYDRYKKAVKRASDI 326
G ++F + + L ++ ++N+ YK+ V + S I
Sbjct: 127 ARGAAVRVDFNTMSSTDLLNALKRVIND-PSYKENVMKLSRI 167
Score = 113 bits (284), Expect = 5e-30
Identities = 29/82 (35%), Positives = 52/82 (63%), Gaps = 4/82 (4%)
Query: 83 KPLPQDLAKWVEG-GKKGAIYFSLGSNVKSAALEDSKRTAILAALARFPDYRIIWKWENE 141
KPLP+++ +V+ G+ G + FSLGS V + + + + I +ALA+ P +++W+++
Sbjct: 5 KPLPKEMEDFVQSSGENGVVVFSLGSMVSN--MTEERANVIASALAQIP-QKVLWRFDGN 61
Query: 142 ELEGLPSNVICRKWLPQHDLLG 163
+ + L N KW+PQ+DLLG
Sbjct: 62 KPDTLGLNTRLYKWIPQNDLLG 83
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance,
glycosylation, enzyme, macrolide, carbohydrate; HET: ERY
UDP; 1.7A {Streptomyces antibioticus}
Length = 430
Score = 143 bits (362), Expect = 9e-39
Identities = 42/188 (22%), Positives = 73/188 (38%), Gaps = 13/188 (6%)
Query: 166 DLAKWVEG-GKKGAIYFSLGSNVKSAALEDSKRTAILAALARFPDYRIIW----KWENEE 220
+ W G + + SLGS + + A P + ++ K E
Sbjct: 221 EEGGWQRPAGAEKVVLVSLGSAFTKQP---AFYRECVRAFGNLPGWHLVLQIGRKVTPAE 277
Query: 221 LEGLPSNVICRKWLPQHDLLAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNV 280
L LP NV W+PQ +L LF+T G QE + P+I +P DQ N
Sbjct: 278 LGELPDNVEVHDWVPQLAILRQA--DLFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNA 335
Query: 281 KIIRRLGIGSYMEFEDIHTETLFENIQEILNNYDRYKKAVKRASDISKTQMMSPRDTAVW 340
+++ LG+ + E+ + L E ++++ + ++R + + R A
Sbjct: 336 DMLQGLGVARKLATEEATADLLRETALALVDD-PEVARRLRRIQAEMAQEGGTRR--AAD 392
Query: 341 WVEYLLKA 348
+E L A
Sbjct: 393 LIEAELPA 400
Score = 87.2 bits (216), Expect = 7e-19
Identities = 32/172 (18%), Positives = 53/172 (30%), Gaps = 13/172 (7%)
Query: 1 MSFYYRLEGYLYLLYARLVLAPRIFSAQDALAKKYFGSSCPSTKDMVRNRSLLLSSSMWI 60
+ + ++ + ++ +A K+ + P T RSL+L
Sbjct: 139 KGYEEEVAEPMWREPRQTERGRAYYARFEAWLKENGITEHPDTFASHPPRSLVLIPKALQ 198
Query: 61 FEYTRPVFPNTIHVGPLHIGDTKPLPQDLAKWVEG-GKKGAIYFSLGSNVKSAALEDSKR 119
R VG + W G + + SLGS +
Sbjct: 199 PHADRVDEDVYTFVGACQ-----GDRAEEGGWQRPAGAEKVVLVSLGSAFTKQP---AFY 250
Query: 120 TAILAALARFPDYRIIW----KWENEELEGLPSNVICRKWLPQHDLLGTVDL 167
+ A P + ++ K EL LP NV W+PQ +L DL
Sbjct: 251 RECVRAFGNLPGWHLVLQIGRKVTPAELGELPDNVEVHDWVPQLAILRQADL 302
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate,
glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A
{Streptomyces antibioticus}
Length = 424
Score = 129 bits (326), Expect = 9e-34
Identities = 39/185 (21%), Positives = 74/185 (40%), Gaps = 13/185 (7%)
Query: 170 WVEGGKKGAIYFSLGSNVKSAALEDSKRTAILAALARFPDYRIIWKW----ENEELEGLP 225
G + + +LGS L+A+ D+ ++ + +L +P
Sbjct: 249 EGPGDGRPVLLIALGSAFTDHL---DFYRTCLSAVDGL-DWHVVLSVGRFVDPADLGEVP 304
Query: 226 SNVICRKWLPQHDLLAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRR 285
NV +W+PQ D+L FIT G+ S EA+ VP++ +P +Q N + I
Sbjct: 305 PNVEVHQWVPQLDILTKA--SAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVE 362
Query: 286 LGIGSYMEFEDIHTETLFENIQEILNNYDRYKKAVKRASDISKTQMMSPRDTAVWWVEYL 345
LG+G ++ + + E L E + + ++ + + + A +E +
Sbjct: 363 LGLGRHIPRDQVTAEKLREAVLAVASD-PGVAERLAAVRQEIREA--GGARAAADILEGI 419
Query: 346 LKADG 350
L G
Sbjct: 420 LAEAG 424
Score = 74.8 bits (184), Expect = 7e-15
Identities = 26/168 (15%), Positives = 53/168 (31%), Gaps = 16/168 (9%)
Query: 6 RLEGYLYLLYARLVLAPRIFSAQDALAKKYFGSSCPSTKDMVRNRSLLLSSSMWIFEYTR 65
A F + + + G P+T+ ++ +++ F+
Sbjct: 167 PAGTGDAEEGAEAEDGLVRFFTRLSAFLEEHGVDTPATEFLIAPNRCIVALP-RTFQIKG 225
Query: 66 PVFPNTIH-VGPLHIGDTKPLPQDLAKWV-EGGKKGAIYFSLGSNVKSAALEDSKRTAIL 123
+ VGP + W G + + +LGS L
Sbjct: 226 DTVGDNYTFVGPTY-----GDRSHQGTWEGPGDGRPVLLIALGSAFTDHL---DFYRTCL 277
Query: 124 AALARFPDYRIIWKW----ENEELEGLPSNVICRKWLPQHDLLGTVDL 167
+A+ D+ ++ + +L +P NV +W+PQ D+L
Sbjct: 278 SAVDGL-DWHVVLSVGRFVDPADLGEVPPNVEVHQWVPQLDILTKASA 324
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A
{Micromonospora echinospora}
Length = 402
Score = 110 bits (276), Expect = 6e-27
Identities = 36/182 (19%), Positives = 70/182 (38%), Gaps = 14/182 (7%)
Query: 170 WVEGGKKGAIYFSLGSNVKSAALEDSKRTAILAALARFPDYRIIW----KWENEELEGLP 225
+ SLG+ A A A + ++ + L LP
Sbjct: 225 QPPRPDAPVLLVSLGN---QFNEHPEFFRACAQAFADT-PWHVVMAIGGFLDPAVLGPLP 280
Query: 226 SNVICRKWLPQHDLLAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFG-DQNYNVKIIR 284
NV +W+P H +LAH + +T G ++ EA VP++ +P F + + + +
Sbjct: 281 PNVEAHQWIPFHSVLAH--ARACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVI 338
Query: 285 RLGIGSYMEFEDIHTETLFENIQEILNNYDRYKKAVKRASDISKTQMMSPRDTAVWWVEY 344
LG+GS + + + ++ E ++ + + ++ V+R + A VE
Sbjct: 339 ELGLGSVLRPDQLEPASIREAVERLAAD-SAVRERVRRMQRDILS--SGGPARAADEVEA 395
Query: 345 LL 346
L
Sbjct: 396 YL 397
Score = 67.4 bits (165), Expect = 2e-12
Identities = 24/138 (17%), Positives = 37/138 (26%), Gaps = 15/138 (10%)
Query: 36 FGSSCPSTKDMVRNRSLLLSSSMWIFEYTRPVFPNTIH-VGPLHIGDTKPLPQDLAKWV- 93
+G P + L + F+ F VGP W
Sbjct: 172 YGVDTPVKEYWDEIEGLTIVFLPKSFQPFAETFDERFAFVGPTL-----TGRDGQPGWQP 226
Query: 94 EGGKKGAIYFSLGSNVKSAALEDSKRTAILAALARFPDYRIIW----KWENEELEGLPSN 149
+ SLG+ A A A + ++ + L LP N
Sbjct: 227 PRPDAPVLLVSLGN---QFNEHPEFFRACAQAFADT-PWHVVMAIGGFLDPAVLGPLPPN 282
Query: 150 VICRKWLPQHDLLGTVDL 167
V +W+P H +L
Sbjct: 283 VEAHQWIPFHSVLAHARA 300
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure
initiative, center for eukaryotic structural genomics;
HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB:
3iaa_A*
Length = 415
Score = 107 bits (270), Expect = 4e-26
Identities = 32/182 (17%), Positives = 65/182 (35%), Gaps = 15/182 (8%)
Query: 170 WVEGGKKGAIYFSLGSNVKSAALEDSKRT-AILAALARFPDYRII----WKWENEELEGL 224
+ SLG+ + A + ++ + + L L
Sbjct: 241 TRPADDLPVVLVSLGT----TFNDRPGFFRDCARAFDGQ-PWHVVMTLGGQVDPAALGDL 295
Query: 225 PSNVICRKWLPQHDLLAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIR 284
P NV +W+P +L + +T GG+ +L EA+++ P++ +P D + +
Sbjct: 296 PPNVEAHRWVPHVKVLEQ--ATVCVTHGGMGTLMEALYWGRPLVVVPQSFDVQPMARRVD 353
Query: 285 RLGIGSYMEFEDIHTETLFENIQEILNNYDRYKKAVKRASDISKTQMMSPRDTAVWWVEY 344
+LG+G+ + E +TL + + + V+ + A VE
Sbjct: 354 QLGLGAVLPGEKADGDTLLAAVGAVAAD-PALLARVEAMRGHVRR--AGGAARAADAVEA 410
Query: 345 LL 346
L
Sbjct: 411 YL 412
Score = 64.3 bits (157), Expect = 2e-11
Identities = 23/140 (16%), Positives = 39/140 (27%), Gaps = 17/140 (12%)
Query: 36 FGSSCPSTKDMVRNRSLLLSSSMWIFEYTRPVFPNTIH-VGPLHIGDTKPLPQDLAKWV- 93
G S L L F+ F + VGP + L +W
Sbjct: 188 HGLSRSVVDCWNHVEQLNLVFVPKAFQIAGDTFDDRFVFVGPCF-----DDRRFLGEWTR 242
Query: 94 EGGKKGAIYFSLGSNVKSAALEDSKRT-AILAALARFPDYRII----WKWENEELEGLPS 148
+ SLG+ + A + ++ + + L LP
Sbjct: 243 PADDLPVVLVSLGT----TFNDRPGFFRDCARAFDGQ-PWHVVMTLGGQVDPAALGDLPP 297
Query: 149 NVICRKWLPQHDLLGTVDLA 168
NV +W+P +L +
Sbjct: 298 NVEAHRWVPHVKVLEQATVC 317
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD; 2.08A {Micromonospora echinospora}
PDB: 3oth_A*
Length = 412
Score = 95.9 bits (239), Expect = 6e-22
Identities = 36/171 (21%), Positives = 69/171 (40%), Gaps = 17/171 (9%)
Query: 163 GTVDLAKWVEGGKKGA--IYFSLGS--NVKSAALEDSKRTAILAALARFPDYRII----W 214
DL W+ +Y +LG+ L A + LA D ++
Sbjct: 227 EQGDLPAWLSSRDTARPLVYLTLGTSSGGTVEVLR-----AAIDGLAGL-DADVLVASGP 280
Query: 215 KWENEELEGLPSNVICRKWLPQHDLLAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFG 274
+ L +P+NV W+PQ LL H + L + GG + A+ VP + P+ G
Sbjct: 281 SLDVSGLGEVPANVRLESWVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFPWAG 338
Query: 275 DQNYNVKIIRRLGIGSYMEFEDIHTETLFENIQEILNNYDRYKKAVKRASD 325
D N + + + G G ++ ++I +++ + +L + Y+ + +
Sbjct: 339 DSFANAQAVAQAGAGDHLLPDNISPDSVSGAAKRLLAE-ESYRAGARAVAA 388
Score = 62.4 bits (152), Expect = 7e-11
Identities = 25/115 (21%), Positives = 42/115 (36%), Gaps = 15/115 (13%)
Query: 61 FEYTRP-VFPNTIHVGPLHIGDTKPLPQDLAKWVEGGKKGAIYFSLGS--NVKSAALEDS 117
+ P + P+ + LP L+ + + +Y +LG+ L
Sbjct: 206 LQEPEFRARPRRHELRPVPFAEQGDLPAWLS-SRDTARP-LVYLTLGTSSGGTVEVLR-- 261
Query: 118 KRTAILAALARFPDYRII----WKWENEELEGLPSNVICRKWLPQHDLLGTVDLA 168
A + LA D ++ + L +P+NV W+PQ LL VDL
Sbjct: 262 ---AAIDGLAGL-DADVLVASGPSLDVSGLGEVPANVRLESWVPQAALLPHVDLV 312
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A
{Saccharopolyspora erythraea}
Length = 441
Score = 94.5 bits (235), Expect = 2e-21
Identities = 35/188 (18%), Positives = 71/188 (37%), Gaps = 10/188 (5%)
Query: 163 GTVDLAKWV-EGGKKGAIYFSLGSNVKSAALEDSKRTAILAALARFPDYRIIW---KWEN 218
G + +W+ + ++ + +LG + + ++ +L A+ D II +
Sbjct: 253 GPSVVPEWLHDEPERRRVCLTLGISSRENSIGQVSIEELLGAVGD-VDAEIIATFDAQQL 311
Query: 219 EELEGLPSNVICRKWLPQHDLLAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNY 278
E + +P NV ++P H LL + GG S A VP + +P D
Sbjct: 312 EGVANIPDNVRTVGFVPMHALLPT--CAATVHHGGPGSWHTAAIHGVPQVILPDGWDTGV 369
Query: 279 NVKIIRRLGIGSYMEFEDIHTETLFENIQEILNNYDRYKKAVKRASDISKTQMMSPRDTA 338
+ + G G + ++ + L E+++ +L++ ++ R D
Sbjct: 370 RAQRTQEFGAGIALPVPELTPDQLRESVKRVLDD-PAHRAGAARMRD--DMLAEPSPAEV 426
Query: 339 VWWVEYLL 346
V E L
Sbjct: 427 VGICEELA 434
Score = 53.3 bits (128), Expect = 6e-08
Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 6/112 (5%)
Query: 61 FEYTRPVFPNTIHVGPLHIGDTKPLPQDLAKWV-EGGKKGAIYFSLGSNVKSAALEDSKR 119
+ + D P + +W+ + ++ + +LG + + ++
Sbjct: 230 PAPAAIRLDTGLKTVGMRYVDYNG-PSVVPEWLHDEPERRRVCLTLGISSRENSIGQVSI 288
Query: 120 TAILAALARFPDYRIIW---KWENEELEGLPSNVICRKWLPQHDLLGTVDLA 168
+L A+ D II + E + +P NV ++P H LL T
Sbjct: 289 EELLGAVGD-VDAEIIATFDAQQLEGVANIPDNVRTVGFVPMHALLPTCAAT 339
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis
orientalis} SCOP: c.87.1.5
Length = 415
Score = 91.4 bits (227), Expect = 2e-20
Identities = 33/197 (16%), Positives = 63/197 (31%), Gaps = 12/197 (6%)
Query: 166 DLAKWVEGGKKGAIYFSLGSNVKSAALEDSKRTAILAALARFPDYRIIWK-WENEELEGL 224
+LA +++ G +Y GS A + A+ I+ + W + L
Sbjct: 229 ELAAFLDAGPP-PVYLGFGSLGAPADA----VRVAIDAIRAHGRRVILSRGWADLVLPDD 283
Query: 225 PSNVICRKWLPQHDLLAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIR 284
++ + L + I GG + A P I +P DQ Y +
Sbjct: 284 GADCFAIGEVNHQVLF--GRVAAVIHHGGAGTTHVAARAGAPQILLPQMADQPYYAGRVA 341
Query: 285 RLGIGSYMEFEDIHTETLFENIQEILNNYDRYKKAVKRASDISKTQMMSPRDTAVWWVEY 344
LG+G + ++L + L + +T A ++
Sbjct: 342 ELGVGVAHDGPIPTFDSLSAALATALT--PETHARATAVAGTIRTD--GAAVAARLLLDA 397
Query: 345 LLKADGNVSHLQPEYWH 361
+ + VS L+ + H
Sbjct: 398 VSREKPTVSALEHHHHH 414
Score = 61.0 bits (148), Expect = 2e-10
Identities = 19/120 (15%), Positives = 40/120 (33%), Gaps = 8/120 (6%)
Query: 50 RSLLLSSSMWIFEYTRPVFPNTIHVGPLHIGDTKPLPQDLAKWVEGGKKGAIYFSLGSNV 109
+ + + +P + + G + D +PL +LA +++ G +Y GS
Sbjct: 193 HPWVAADPVLAPL--QPTDLDAVQTGAWILPDERPLSPELAAFLDAGPP-PVYLGFGSLG 249
Query: 110 KSAALEDSKRTAILAALARFPDYRIIWK-WENEELEGLPSNVICRKWLPQHDLLGTVDLA 168
A + A+ I+ + W + L ++ + L G V
Sbjct: 250 APADA----VRVAIDAIRAHGRRVILSRGWADLVLPDDGADCFAIGEVNHQVLFGRVAAV 305
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin,
teicoplanin, ORF1, natural products, antibiotic; HET:
UDP; 1.15A {Amycolatopsis orientalis} PDB: 3h4i_A*
1pn3_A* 1pnv_A*
Length = 404
Score = 89.6 bits (222), Expect = 8e-20
Identities = 26/197 (13%), Positives = 55/197 (27%), Gaps = 14/197 (7%)
Query: 166 DLAKWVEGGKKGAIYFSLGSNVKSAALEDSKRTAILAALARFPDYRII--WKWENEELEG 223
+L ++ G +Y GS A + A+ R++ W
Sbjct: 212 ELEGFLRAGSP-PVYVGFGSGPAPAEA----ARVAIEAVRA-QGRRVVLSSGWAGLGRID 265
Query: 224 LPSNVICRKWLPQHDLLAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKII 283
+ + + L + + GG + P + +P DQ Y +
Sbjct: 266 EGDDCLVVGEVNHQVLF--GRVAAVVHHGGAGTTTAVTRAGAPQVVVPQKADQPYYAGRV 323
Query: 284 RRLGIGSYMEFEDIHTETLFENIQEILNNYDRYKKAVKRASDISKTQMMSPRDTAVWWVE 343
LG+G + E+L + L + + + A +E
Sbjct: 324 ADLGVGVAHDGPTPTVESLSAALATALT--PGIRARAAAVAG--TIRTDGTTVAAKLLLE 379
Query: 344 YLLKADGNVSHLQPEYW 360
+ + +V +
Sbjct: 380 AISRQRSSVPAAKLAAA 396
Score = 62.6 bits (152), Expect = 6e-11
Identities = 21/126 (16%), Positives = 38/126 (30%), Gaps = 9/126 (7%)
Query: 45 DMVRNRSLLLSSSMWIFEYTRPVFPNTIHVGPLHIGDTKPLPQDLAKWVEGGKKGAIYFS 104
D L++ + RP T+ G + D +PL +L ++ G +Y
Sbjct: 170 DYGYTDQPWLAAD-PVLSPLRPTDLGTVQTGAWILPDQRPLSAELEGFLRAGSP-PVYVG 227
Query: 105 LGSNVKSAALEDSKRTAILAALARFPDYRII--WKWENEELEGLPSNVICRKWLPQHDLL 162
GS A + A+ R++ W + + + L
Sbjct: 228 FGSGPAPAEA----ARVAIEAVRA-QGRRVVLSSGWAGLGRIDEGDDCLVVGEVNHQVLF 282
Query: 163 GTVDLA 168
G V
Sbjct: 283 GRVAAV 288
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold,
glycopeptide, VACO antibiotic, transferase-antibiotic
complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A
{Amycolatopsis orientalis} SCOP: c.87.1.5
Length = 416
Score = 86.8 bits (215), Expect = 7e-19
Identities = 32/193 (16%), Positives = 58/193 (30%), Gaps = 25/193 (12%)
Query: 166 DLAKWVEGGKKGAIYFSLGSNVKSAALEDSKRTA--ILAALARFPDYRII--WKWENEEL 221
+L ++ G ++ GS ++ A + A+ R+I W L
Sbjct: 228 ELEAFLAAGSPP-VHIGFGS----SSGRGIADAAKVAVEAIRA-QGRRVILSRGWTELVL 281
Query: 222 EGLPSNVICRKWLPQHDLLAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVK 281
+ + L + I G + A VP + IP DQ Y
Sbjct: 282 PDDRDDCFAIDEVNFQALF--RRVAAVIHHGSAGTEHVATRAGVPQLVIPRNTDQPYFAG 339
Query: 282 IIRRLGIGSYMEFEDIHTETLFENIQEILNNYDRYKKAVKRASDISKT-----------Q 330
+ LGIG + E+L + +L + + + + T
Sbjct: 340 RVAALGIGVAHDGPTPTFESLSAALTTVLA--PETRARAEAVAGMVLTDGAAAAADLVLA 397
Query: 331 MMSPRDTAVWWVE 343
+ AV +E
Sbjct: 398 AVGREKPAVPALE 410
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati
enzyme discovery for natural product biosynthesis,
natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Length = 398
Score = 84.8 bits (210), Expect = 3e-18
Identities = 23/164 (14%), Positives = 56/164 (34%), Gaps = 12/164 (7%)
Query: 170 WVEGGKKGAIYFSLGSNVKSAALEDSKRT-----AILAALARFPDYRIIW---KWENEEL 221
E K+ + + G+ V A+ L + + ++ + L
Sbjct: 221 VFEERKQPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPK-LGFEVVVAVSDKLAQTL 279
Query: 222 EGLPSNVICRKWLPQHDLLAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVK 281
+ LP V+ P ++ + + GG + + VP + +P + + +
Sbjct: 280 QPLPEGVLAAGQFPLSAIMPA--CDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSAR 337
Query: 282 IIRRLGIGSYMEFEDIHTETLFENIQEILNNYDRYKKAVKRASD 325
++ G G + +E E++ I ++ Y +R +
Sbjct: 338 LLHAAGAGVEVPWEQAGVESVLAACARIRDD-SSYVGNARRLAA 380
Score = 45.5 bits (108), Expect = 2e-05
Identities = 14/116 (12%), Positives = 33/116 (28%), Gaps = 13/116 (11%)
Query: 61 FEYTRPVFPNTIHVGPLHIGDTKPLPQDLAKWVEGGKKGAIYFSLGSNVKSAALEDSKRT 120
E + ++ Q + E K+ + + G+ V
Sbjct: 194 MEAQPKPGTTKMR----YVPYNGRNDQVPSWVFEERKQPRLCLTFGTRVPLPNTNTIPGG 249
Query: 121 -----AILAALARFPDYRIIW---KWENEELEGLPSNVICRKWLPQHDLLGTVDLA 168
A+ L + + ++ + L+ LP V+ P ++ D+
Sbjct: 250 LSLLQALSQELPK-LGFEVVVAVSDKLAQTLQPLPEGVLAAGQFPLSAIMPACDVV 304
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC;
1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Length = 391
Score = 84.1 bits (208), Expect = 5e-18
Identities = 31/161 (19%), Positives = 55/161 (34%), Gaps = 9/161 (5%)
Query: 170 WVEGGKKGAIYFSLGSNVKSAALEDSKRTAILAALARFPDYRIIW---KWENEELEGLPS 226
+ +G V +A A+ AA P + L LP
Sbjct: 212 GAARTSARRVCICMGRMVLNATGPAPLLRAVAAATEL-PGVEAVIAVPPEHRALLTDLPD 270
Query: 227 NVICRKWLPQHDLLAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRL 286
N + +P + L +L I GG + A +P + +P + DQ + +
Sbjct: 271 NARIAESVPLNLFLRT--CELVICAGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAA 328
Query: 287 GIGSYMEFEDIHT--ETLFENIQEILNNYDRYKKAVKRASD 325
G G + E + E ++I +L + + A + SD
Sbjct: 329 GAGICLPDEQAQSDHEQFTDSIATVLGD-TGFAAAAIKLSD 368
Score = 51.7 bits (124), Expect = 2e-07
Identities = 19/128 (14%), Positives = 33/128 (25%), Gaps = 11/128 (8%)
Query: 45 DMVRNRSLLLSSSMWIFEYTRPVFPNTIHVGPLHIGDTKPLPQDLAKWV-EGGKKGAIYF 103
+ L+L + + + P W +
Sbjct: 170 TGLPTPELILDPCPPSLQASDAPQGAPVQYVPY------NGSGAFPAWGAARTSARRVCI 223
Query: 104 SLGSNVKSAALEDSKRTAILAALARFPDYRIIW---KWENEELEGLPSNVICRKWLPQHD 160
+G V +A A+ AA P + L LP N + +P +
Sbjct: 224 CMGRMVLNATGPAPLLRAVAAATEL-PGVEAVIAVPPEHRALLTDLPDNARIAESVPLNL 282
Query: 161 LLGTVDLA 168
L T +L
Sbjct: 283 FLRTCELV 290
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis;
1.88A {Streptomyces fradiae}
Length = 384
Score = 80.2 bits (198), Expect = 9e-17
Identities = 26/161 (16%), Positives = 48/161 (29%), Gaps = 10/161 (6%)
Query: 170 WVEGGKKGAIYFSLGSNVKSAALEDSKRT--AILAALARFPDYRII---WKWENEELEGL 224
+ + + GS V + + + + L R D +I E L
Sbjct: 204 MYTRDTRQRVLVTSGSRVAKESYDRNFDFLRGLAKDLVR-WDVELIVAAPDTVAEALRAE 262
Query: 225 PSNVICRKWLPQHDLLAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIR 284
W P + L + G S + VP + IP + +
Sbjct: 263 VPQARVG-WTPLDVVAPT--CDLLVHHAGGVSTLTGLSAGVPQLLIPKGSVLEAPARRVA 319
Query: 285 RLGIGSYMEFEDIHTETLFENIQEILNNYDRYKKAVKRASD 325
G + + TE + ++ QE+ D Y + + S
Sbjct: 320 DYGAAIALLPGEDSTEAIADSCQELQAK-DTYARRAQDLSR 359
Score = 40.6 bits (95), Expect = 7e-04
Identities = 14/82 (17%), Positives = 23/82 (28%), Gaps = 7/82 (8%)
Query: 92 WVEGGKKGAIYFSLGSNVKSAALEDSKRT--AILAALARFPDYRII---WKWENEELEGL 146
+ + + GS V + + + + L R D +I E L
Sbjct: 204 MYTRDTRQRVLVTSGSRVAKESYDRNFDFLRGLAKDLVR-WDVELIVAAPDTVAEALRAE 262
Query: 147 PSNVICRKWLPQHDLLGTVDLA 168
W P + T DL
Sbjct: 263 VPQARVG-WTPLDVVAPTCDLL 283
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD C0T; 1.60A {Micromonospora
echinospora} PDB: 3d0q_A* 3d0r_A*
Length = 398
Score = 73.7 bits (181), Expect = 2e-14
Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 7/114 (6%)
Query: 179 IYFSLGSNVKSAALEDSKRTAILAALARFPDYRIIW---KWENEELEGLPSNVICRKWLP 235
+ ++G+ A + I+AA D + + L LP NV W P
Sbjct: 235 VAITMGTIELQAFGIGAVE-PIIAAAGE-VDADFVLALGDLDISPLGTLPRNVRAVGWTP 292
Query: 236 QHDLLAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIG 289
H LL + GG ++ A+ +P + P DQ + G
Sbjct: 293 LHTLLRT--CTAVVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRG 344
Score = 44.4 bits (105), Expect = 4e-05
Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 5/71 (7%)
Query: 101 IYFSLGSNVKSAALEDSKRTAILAALARFPDYRIIW---KWENEELEGLPSNVICRKWLP 157
+ ++G+ A + I+AA D + + L LP NV W P
Sbjct: 235 VAITMGTIELQAFGIGAVE-PIIAAAGE-VDADFVLALGDLDISPLGTLPRNVRAVGWTP 292
Query: 158 QHDLLGTVDLA 168
H LL T
Sbjct: 293 LHTLLRTCTAV 303
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis,
glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP:
c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Length = 456
Score = 53.0 bits (128), Expect = 7e-08
Identities = 40/136 (29%), Positives = 57/136 (41%), Gaps = 33/136 (24%)
Query: 179 IYFSLGSNVK---------SAALEDSKRTAILAALARFPDYRIIWKWENEELEGLPSNVI 229
+Y S G+ S ALE S+ F IW ++ LP +
Sbjct: 274 VYISFGTVTTPPPAEVVALSEALEASRV--------PF-----IWSLRDKARVHLPEGFL 320
Query: 230 CR--------KWLPQHDLLAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVK 281
+ W PQ ++LAH + F+T G SL E+V VP+I PFFGDQ N +
Sbjct: 321 EKTRGYGMVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGR 380
Query: 282 IIRR-LGIGSYMEFED 296
++ L IG + E
Sbjct: 381 MVEDVLEIG--VRIEG 394
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation,
isoflavonoid, uridine diphosphate glycosyltransferase;
2.10A {Medicago truncatula} SCOP: c.87.1.10
Length = 482
Score = 52.7 bits (127), Expect = 1e-07
Identities = 32/175 (18%), Positives = 59/175 (33%), Gaps = 43/175 (24%)
Query: 179 IYFSLGS--NVKSA-------ALEDSKRTAILAALARFPDYRIIW----KWENEELEGLP 225
+Y + GS + L + K+ F +W
Sbjct: 298 VYVNFGSTTVMTPEQLLEFAWGLANCKK--------SF-----LWIIRPDLVIGGSVIFS 344
Query: 226 SNVICR--------KWLPQHDLLAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQN 277
S W PQ +L HP+I F+T G S E++ VP++ PFF DQ
Sbjct: 345 SEFTNEIADRGLIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQP 404
Query: 278 YNVKII-----RRLGIGSYMEFEDIHT--ETLF--ENIQEILNNYDRYKKAVKRA 323
+ + I + I + ++ E++ + + +++ KK +
Sbjct: 405 TDCRFICNEWEIGMEIDTNVKREELAKLINEVIAGDKGKKMKQKAMELKKKAEEN 459
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold,
GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A
{Medicago truncatula} PDB: 3hbj_A*
Length = 454
Score = 52.2 bits (126), Expect = 1e-07
Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 33/136 (24%)
Query: 179 IYFSLGSNVK---------SAALEDSKRTAILAALARFPDYRIIWKWENEELEGLPSNVI 229
+Y S GS V + +LE+ F IW + + E LP +
Sbjct: 276 VYISFGSVVTPPPHELTALAESLEECGF--------PF-----IWSFRGDPKEKLPKGFL 322
Query: 230 CR--------KWLPQHDLLAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVK 281
R W PQ ++L H ++ +F+T G S+ E + VP+I PFFGDQ N
Sbjct: 323 ERTKTKGKIVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTI 382
Query: 282 IIRR-LGIGSYMEFED 296
+ L IG + ++
Sbjct: 383 LTESVLEIG--VGVDN 396
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase,
N-glucosyltransferase, UDP-glucose- dependent, plant
glycosyltransferase; HET: UDP; 1.45A {Arabidopsis
thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Length = 480
Score = 52.2 bits (126), Expect = 2e-07
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 229 ICRKWLPQHDLLAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKII-RRLG 287
+ W PQ +LAHP+ F+T G S E+V +P+I P + +Q N ++ +
Sbjct: 342 VIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIR 401
Query: 288 IG 289
Sbjct: 402 AA 403
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase;
HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10
PDB: 2acw_A*
Length = 463
Score = 47.6 bits (114), Expect = 5e-06
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 233 WLPQHDLLAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRR-LGIG 289
W PQ ++LAH I F++ G S+ E++ F VP++ P + +Q N + + G+G
Sbjct: 339 WAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVG 396
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.0 bits (98), Expect = 4e-04
Identities = 63/359 (17%), Positives = 102/359 (28%), Gaps = 139/359 (38%)
Query: 14 LYARLVLAPRIFSAQDALAKKYFGSSCPSTKDMVRNRSLLLSSSMWIFEYTRPVFPN--T 71
LY A +++ D K +G S D+V N P T
Sbjct: 1635 LYKTSKAAQDVWNRADNHFKDTYGF---SILDIVIN------------------NPVNLT 1673
Query: 72 IHVGPLHIGDTKPLPQDLAKWVEGGKKGAIYFSLGSNVKSAALEDSKRTAILAALARFPD 131
IH G E GK+ + N SA + ++ L F +
Sbjct: 1674 IHFGG-----------------EKGKR------IRENY-SAMIFETIVDGKLKTEKIFKE 1709
Query: 132 Y-----RIIWKWENEELEGLPSNVICRKWLPQHDLLGTVDLAKWV----EGGKKGAIYF- 181
++ E L Q L ++ A + +G F
Sbjct: 1710 INEHSTSYTFRSEKGLLS-ATQFT-------QPALT-LMEKAAFEDLKSKGLIPADATFA 1760
Query: 182 --SLGSNVKSAALEDSKRTAILAALAR---FPD------YR-IIWKWENEELEGLPSNVI 229
SLG +A LA+LA YR + + E SN
Sbjct: 1761 GHSLGEY--AA----------LASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNY- 1807
Query: 230 CRKWLPQHDLLA-HPN-IKLFITQGGLQSLQEAVHFEV-----PVIGIPFFGDQNYNVK- 281
++A +P + +Q LQ + E V V NYNV+
Sbjct: 1808 --------GMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV---------NYNVEN 1850
Query: 282 --IIRRLGI-GSYMEFEDIHTETLFENIQEILNNYDRYKKAVKRASDISK-TQMMSPRD 336
+ G L + + +L N+ + +K DI + + +S +
Sbjct: 1851 QQYV----AAG--------DLRAL-DTVTNVL-NFIKLQKI-----DIIELQKSLSLEE 1890
Score = 39.3 bits (91), Expect = 0.003
Identities = 31/137 (22%), Positives = 50/137 (36%), Gaps = 43/137 (31%)
Query: 290 SYMEFEDIHT---------ETLFENIQEILNNYDRYKKAVKRASDISKTQMMSPRDTAVW 340
Y+E DIH +T +E++ NY A ++K ++A
Sbjct: 94 CYLEGNDIHALAAKLLQENDTTLVKTKELIKNY--I-----TARIMAKRPFDKKSNSA-- 144
Query: 341 WVEYLLKA--DGNVSHL------Q---PEYW----HLTWYE-YFGLDVYLVIFSPVILAL 384
L +A +GN L Q +Y+ L Y+ Y L L+ FS L
Sbjct: 145 ----LFRAVGEGNA-QLVAIFGGQGNTDDYFEELRDL--YQTYHVLVGDLIKFS--AETL 195
Query: 385 YGLYRLVLTINRRWSKG 401
L R L + +++G
Sbjct: 196 SELIRTTLDAEKVFTQG 212
Score = 33.9 bits (77), Expect = 0.10
Identities = 68/438 (15%), Positives = 116/438 (26%), Gaps = 168/438 (38%)
Query: 51 SLLLSSSMWI--------FEYTRPVFPNTIHVGPLHIGDTKPL-PQDL-AKWVEGGKKGA 100
LL+ ++ + F P D +P P +L K
Sbjct: 19 VLLVPTASFFIASQLQEQFNKILPEPTEGF------AADDEPTTPAELVGK--------- 63
Query: 101 IYFSLG---SNVKSAALEDSKRTAIL-AALARFPDYRIIWKWENEELEGLPSNVICRKWL 156
F LG S V+ + + + +L L F EN LEG +++
Sbjct: 64 --F-LGYVSSLVEPS--KVGQFDQVLNLCLTEF---------ENCYLEG--NDI------ 101
Query: 157 PQHDLLGTVDLAKWVEGGKKGAI---YF--------SLGSNVKSAALEDSKR-TAILAAL 204
H L + K + Y SA A L A+
Sbjct: 102 --HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI 159
Query: 205 --------ARFPDYRIIWK-----------WENEELEGLPSNVIC-----------RKWL 234
F + R +++ + E L L + +WL
Sbjct: 160 FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 235 ------PQHDLLAH-----PNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKII 283
P D L P I + Q H+ V + +
Sbjct: 220 ENPSNTPDKDYLLSIPISCPLI--GVIQ--------LAHYVV------TAKLLGFTPGEL 263
Query: 284 RRLGIGSYMEFEDIHT----------ETLFENI--------------QEILNNYDRYKKA 319
R G+ + + T E+ F ++ E N
Sbjct: 264 RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSI 323
Query: 320 VKRASDISKTQ---MMSPRDTAVWWVEYLLKADGNVSHLQPEYWHLTWYEYFGLDVYLVI 376
++ + + ++ M+S + V+ + N SHL P + + LV
Sbjct: 324 LEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT-N-SHL-PAGKQVE--------ISLVN 372
Query: 377 FSP---VI----LALYGL 387
V+ +LYGL
Sbjct: 373 -GAKNLVVSGPPQSLYGL 389
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 0.002
Identities = 56/376 (14%), Positives = 111/376 (29%), Gaps = 86/376 (22%)
Query: 68 FPNTIH---VGPLHIGDT--KPLPQDLAKWVEGGKKGAIYFSLGSNVKSAALEDSKRTAI 122
I + + +T + L Q L + SN+K
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEML-QKL--LYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 123 LAALARFPDYRIIWK--WENEELEGLPSNVICRKWLPQHDLLGTVDLAKWVEGGKKGAIY 180
L + + ++ + N+ C+ LL T K V A
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAF--NLSCKI------LLTTRF--KQVTDFLSAATT 286
Query: 181 FSLGSNVKSAALEDSKRTAILAALARFPDYRIIWKWENEELEGLPS----------NVI- 229
+ + S L + ++L K+ + + LP ++I
Sbjct: 287 THISLDHHSMTLTPDEVKSLLL------------KYLDCRPQDLPREVLTTNPRRLSIIA 334
Query: 230 --CRKWLPQHDLLAHPNIKLF--ITQGGLQSLQEAV---HFEVPVIGIPFFGDQNYNVKI 282
R L D H N I + L L+ A F+ + F + I
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV----FPP---SAHI 387
Query: 283 -IRRLGI----GSYMEFEDI----HTETLFE--NIQEILNNYDRY-KKAVKRASDISKTQ 330
L + + + H +L E + ++ Y + VK ++ + +
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447
Query: 331 MMSPRDTAVWWVE-YLLKADGNVSHLQPEYWHLTWYEYFGLDVY-LVIFSPVILALYGLY 388
+ V+ Y + + L P Y +Y + G + L L+
Sbjct: 448 SI---------VDHYNIPKTFDSDDLIPPYLDQYFYSHIG---HHLKNIEHP--ERMTLF 493
Query: 389 RLVLTINRRWSKGKLK 404
R+V ++ R+ + K++
Sbjct: 494 RMVF-LDFRFLEQKIR 508
Score = 32.5 bits (73), Expect = 0.30
Identities = 63/408 (15%), Positives = 117/408 (28%), Gaps = 134/408 (32%)
Query: 2 SFYYRLEGYLYL-LYAR--LVLAPRIFSAQDALAKKYFGSSCPSTKDMV--RNRSLLLSS 56
S L L Y LVL + Q+A A F SC K ++ R + +
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLL----NVQNAKAWNAFNLSC---KILLTTRFKQVTDFL 281
Query: 57 SMWIFEYTRPVFPNTIHVGPLHIGDTKPLPQDLAKWVEGGKKGAIYFSLGSNVKSAAL-E 115
S T H L + K L L K++ + + L
Sbjct: 282 S----AATTTHISLDHHSMTLTPDEVKSL---LLKYL--------------DCRPQDLPR 320
Query: 116 DSKRT-----AILAALARFPDYRIIWK-WENEELEGL----------------------- 146
+ T +I+A R D W W++ + L
Sbjct: 321 EVLTTNPRRLSIIAESIR--DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 147 ---------PSNVICRKW--LPQHDLLGTVD-------LAKWVEGGKKG--AIYFSL-GS 185
P+ ++ W + + D++ V+ + K + +IY L
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 186 NVKSAALEDSKRTAILAALARFPDYRIIWKWENEELEGLP-SNVICRKWLPQH------- 237
AL S I+ Y I +++++L + H
Sbjct: 439 LENEYALHRS----IVDH------YNIPKTFDSDDLIPPYLDQYFY-SHIGHHLKNIEHP 487
Query: 238 ---DLLAHPNIKL---FITQGGLQSLQEAVHFEVPVIGIPFFGD-QNYNVKIIR------ 284
L + L F+ + ++ A + + + + Y I
Sbjct: 488 ERMTLF--RMVFLDFRFL-EQKIRHDSTAWNASGSI--LNTLQQLKFYKPYICDNDPKYE 542
Query: 285 RLGIGSYMEFEDIHTETLFEN-----IQEILNN-----YDRYKKAVKR 322
RL + + ++F E L + ++ L ++ K V+R
Sbjct: 543 RL-VNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
>2q01_A Uronate isomerase; structural genomics, protein structure
initiative NEW YORK SGX research center for structural
genomics, nysgx; 2.34A {Caulobacter crescentus}
Length = 497
Score = 31.2 bits (70), Expect = 0.72
Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 15/83 (18%)
Query: 303 FENIQEILNNYDRYKKAVKRASDISKTQMM----------SPRDTAVWWVEYLLKADGNV 352
F++ ++L D Y + + +S + PR+ + + G
Sbjct: 55 FQDATDLLLAPDHYLFRMLYSQGVSLDALKVRSKAGVPDTDPREAWRVFASHFYLFRGTP 114
Query: 353 SHLQPEYW-HLTWYEYFGLDVYL 374
S W + + + FG +L
Sbjct: 115 SW----VWLNHVFSQVFGFTEFL 133
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB:
3hbn_A*
Length = 282
Score = 29.7 bits (65), Expect = 1.7
Identities = 10/85 (11%), Positives = 26/85 (30%), Gaps = 2/85 (2%)
Query: 214 WKWENEELEGLPSNVICRKWLPQHDLLAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFF 273
+ ++ L +N+ L + I + EA+ + I +
Sbjct: 196 NLKKLQKFAKLHNNIRLFIDHENIAKLMN-ESNKLIISASS-LVNEALLLKANFKAICYV 253
Query: 274 GDQNYNVKIIRRLGIGSYMEFEDIH 298
+Q + + G ++ + H
Sbjct: 254 KNQESTATWLAKKGYEVEYKYLEHH 278
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 27.5 bits (60), Expect = 3.5
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 355 LQPEYWHLTWYEYFGLDVYLVIFSPVILALYGLYR 389
++ E +W E + +++ F PV+ G YR
Sbjct: 55 VKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYR 89
>1iv8_A Maltooligosyl trehalose synthase; beta alpha barrel, intramolecular
transglucosylation, isomerase; HET: MLZ MLY; 1.90A
{Sulfolobus acidocaldarius} SCOP: b.71.1.1 c.1.8.1
Length = 720
Score = 28.0 bits (62), Expect = 6.3
Identities = 7/49 (14%), Positives = 14/49 (28%), Gaps = 1/49 (2%)
Query: 86 PQDLAKWVEGGKKGAIYFSLGSNVKS-AALEDSKRTAILAALARFPDYR 133
+++ + K I V A+ + L+ YR
Sbjct: 302 KISISESIXKIKAQIIDELFSYEVXRLASQLGISYDILRDYLSCIDVYR 350
>4f53_A SUSD homolog; TPR-like protein, mucin O-glycan binding, structural
genomic center for structural genomics, JCSG; 2.25A
{Bacteroides ovatus}
Length = 520
Score = 27.9 bits (61), Expect = 7.8
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 308 EILNNYDRYKKAVKRASDISKTQMMSPRDTAVWW 341
E N + + AV + SKT+ T VWW
Sbjct: 484 EYRENRESVEAAVATLTQESKTKRGDTMATHVWW 517
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.435
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,679,100
Number of extensions: 407436
Number of successful extensions: 1122
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1081
Number of HSP's successfully gapped: 55
Length of query: 406
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 310
Effective length of database: 4,021,377
Effective search space: 1246626870
Effective search space used: 1246626870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.2 bits)