Query psy17871
Match_columns 189
No_of_seqs 145 out of 1689
Neff 9.8
Searched_HMMs 46136
Date Sat Aug 17 01:08:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17871.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17871hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0034|consensus 100.0 1.2E-28 2.6E-33 177.0 17.5 176 1-182 1-186 (187)
2 COG5126 FRQ1 Ca2+-binding prot 100.0 3.9E-27 8.4E-32 164.0 14.7 148 16-174 8-159 (160)
3 KOG0038|consensus 99.9 1.4E-26 3E-31 155.6 14.3 182 1-183 1-189 (189)
4 KOG0027|consensus 99.9 1.8E-23 3.9E-28 147.5 14.6 139 22-171 2-149 (151)
5 KOG0044|consensus 99.9 1E-22 2.2E-27 146.5 14.2 174 1-182 1-186 (193)
6 KOG0031|consensus 99.9 4.8E-21 1E-25 130.1 13.8 138 21-170 25-164 (171)
7 PTZ00183 centrin; Provisional 99.9 1.7E-20 3.7E-25 133.0 15.2 143 21-174 10-157 (158)
8 PTZ00184 calmodulin; Provision 99.8 9.1E-20 2E-24 127.9 15.2 139 21-170 4-147 (149)
9 KOG0030|consensus 99.8 2.4E-19 5.1E-24 119.9 12.2 138 21-170 4-150 (152)
10 KOG0028|consensus 99.8 5.6E-19 1.2E-23 120.9 13.0 142 20-172 25-171 (172)
11 KOG0037|consensus 99.8 9.5E-18 2.1E-22 120.7 13.2 134 29-180 59-197 (221)
12 KOG0036|consensus 99.6 1.5E-14 3.2E-19 112.9 11.8 129 29-174 16-149 (463)
13 PF13499 EF-hand_7: EF-hand do 99.5 4.3E-14 9.4E-19 85.7 7.8 66 102-169 1-66 (66)
14 PLN02964 phosphatidylserine de 99.5 5.6E-13 1.2E-17 111.8 13.5 133 5-149 118-275 (644)
15 cd05022 S-100A13 S-100A13: S-1 99.4 1.7E-12 3.6E-17 82.8 7.7 68 102-175 9-79 (89)
16 KOG4223|consensus 99.3 1.9E-11 4.2E-16 93.1 10.0 127 29-167 165-301 (325)
17 cd05027 S-100B S-100B: S-100B 99.3 2.1E-11 4.6E-16 77.8 8.3 67 102-174 9-82 (88)
18 KOG2562|consensus 99.2 1.2E-10 2.6E-15 92.6 11.6 142 21-168 271-421 (493)
19 cd05031 S-100A10_like S-100A10 99.2 8E-11 1.7E-15 76.3 8.5 72 101-178 8-86 (94)
20 KOG0027|consensus 99.2 3.7E-10 8E-15 79.6 11.3 101 66-173 10-115 (151)
21 KOG0377|consensus 99.2 2.4E-10 5.2E-15 90.4 11.0 133 29-170 466-614 (631)
22 PTZ00183 centrin; Provisional 99.2 7.4E-10 1.6E-14 78.2 12.5 100 67-172 20-119 (158)
23 cd05026 S-100Z S-100Z: S-100Z 99.2 1.9E-10 4.2E-15 74.3 8.6 70 102-175 11-85 (93)
24 cd05025 S-100A1 S-100A1: S-100 99.2 1.8E-10 3.9E-15 74.4 8.4 75 101-179 9-88 (92)
25 cd05029 S-100A6 S-100A6: S-100 99.2 2.2E-10 4.8E-15 73.1 8.0 67 102-174 11-82 (88)
26 PTZ00184 calmodulin; Provision 99.1 1.5E-09 3.2E-14 75.8 11.7 99 67-171 14-112 (149)
27 COG5126 FRQ1 Ca2+-binding prot 99.1 3.6E-09 7.9E-14 74.1 11.7 99 67-172 23-121 (160)
28 cd00052 EH Eps15 homology doma 99.1 8.7E-10 1.9E-14 66.6 7.5 63 104-174 2-64 (67)
29 KOG0044|consensus 99.1 2.1E-09 4.5E-14 77.9 10.0 91 76-172 39-129 (193)
30 PF13833 EF-hand_8: EF-hand do 99.1 7.7E-10 1.7E-14 64.1 6.3 52 114-171 1-53 (54)
31 cd00213 S-100 S-100: S-100 dom 99.1 1.4E-09 3.1E-14 69.5 8.0 69 101-173 8-81 (88)
32 cd05023 S-100A11 S-100A11: S-1 99.0 2.2E-09 4.7E-14 68.6 8.3 69 102-174 10-83 (89)
33 KOG4223|consensus 99.0 9.9E-10 2.1E-14 83.9 7.8 142 22-173 70-230 (325)
34 smart00027 EH Eps15 homology d 99.0 1.9E-09 4.1E-14 70.1 8.1 69 101-177 10-78 (96)
35 KOG0040|consensus 99.0 1.2E-08 2.5E-13 90.8 14.4 144 11-169 2236-2396(2399)
36 cd00051 EFh EF-hand, calcium b 99.0 3.4E-09 7.4E-14 62.4 7.2 61 103-169 2-62 (63)
37 KOG0037|consensus 99.0 1.6E-08 3.4E-13 73.4 11.5 141 7-170 73-219 (221)
38 KOG4666|consensus 98.9 1.1E-08 2.4E-13 78.3 9.7 123 46-176 241-364 (412)
39 PLN02964 phosphatidylserine de 98.9 1.9E-08 4.2E-13 84.9 11.1 97 68-173 147-245 (644)
40 cd00252 SPARC_EC SPARC_EC; ext 98.9 1E-08 2.3E-13 68.6 7.4 61 101-171 48-108 (116)
41 KOG0028|consensus 98.9 6.2E-08 1.3E-12 67.0 11.0 101 67-174 36-137 (172)
42 PF14658 EF-hand_9: EF-hand do 98.9 1.7E-08 3.6E-13 59.9 6.7 62 105-171 2-64 (66)
43 cd05030 calgranulins Calgranul 98.8 2.3E-08 5E-13 63.9 7.5 67 102-174 9-82 (88)
44 KOG0034|consensus 98.8 5.9E-08 1.3E-12 70.2 10.5 115 7-130 50-176 (187)
45 PF13499 EF-hand_7: EF-hand do 98.8 1.3E-08 2.8E-13 61.4 5.2 61 67-127 3-66 (66)
46 cd05022 S-100A13 S-100A13: S-1 98.6 7.3E-08 1.6E-12 61.5 5.3 62 27-93 7-76 (89)
47 smart00027 EH Eps15 homology d 98.6 1.3E-07 2.7E-12 61.5 6.2 67 21-92 3-72 (96)
48 PF00036 EF-hand_1: EF hand; 98.6 8.2E-08 1.8E-12 47.9 3.6 29 102-130 1-29 (29)
49 cd05027 S-100B S-100B: S-100B 98.5 3.3E-07 7.2E-12 58.4 6.1 60 29-93 10-80 (88)
50 KOG0041|consensus 98.5 5.5E-07 1.2E-11 64.6 6.9 64 102-171 100-163 (244)
51 KOG2643|consensus 98.5 1.5E-06 3.3E-11 69.2 9.8 136 22-171 228-384 (489)
52 KOG0031|consensus 98.5 1.5E-06 3.3E-11 59.8 8.6 69 102-172 33-130 (171)
53 KOG0036|consensus 98.4 2.3E-06 5E-11 67.8 9.8 129 29-172 53-184 (463)
54 PF13405 EF-hand_6: EF-hand do 98.4 3.7E-07 7.9E-12 46.4 3.5 30 102-131 1-31 (31)
55 cd05024 S-100A10 S-100A10: A s 98.4 3.8E-06 8.1E-11 53.4 8.8 71 102-177 9-82 (91)
56 PF13833 EF-hand_8: EF-hand do 98.4 2E-06 4.4E-11 49.5 6.3 52 78-129 2-53 (54)
57 KOG2643|consensus 98.4 5.4E-06 1.2E-10 66.1 10.3 146 5-171 300-453 (489)
58 cd00213 S-100 S-100: S-100 dom 98.4 1.2E-06 2.5E-11 55.9 5.5 63 25-92 5-79 (88)
59 cd00051 EFh EF-hand, calcium b 98.4 3.6E-06 7.9E-11 49.0 7.3 60 67-127 3-62 (63)
60 cd05026 S-100Z S-100Z: S-100Z 98.4 1.7E-06 3.6E-11 55.8 6.2 60 29-93 12-82 (93)
61 cd00052 EH Eps15 homology doma 98.3 9.1E-06 2E-10 48.7 7.5 58 69-129 4-61 (67)
62 cd05025 S-100A1 S-100A1: S-100 98.2 3.7E-06 8E-11 54.1 6.0 60 29-93 11-81 (92)
63 cd00252 SPARC_EC SPARC_EC; ext 98.2 8.7E-06 1.9E-10 54.5 7.1 57 66-127 50-106 (116)
64 KOG4065|consensus 98.2 6.5E-06 1.4E-10 53.9 6.0 65 104-168 70-142 (144)
65 PF00036 EF-hand_1: EF hand; 98.2 3.2E-06 7E-11 42.1 3.6 25 147-171 4-28 (29)
66 KOG0751|consensus 98.2 1.4E-05 3E-10 64.9 8.5 125 29-168 110-241 (694)
67 KOG4251|consensus 98.1 9.1E-06 2E-10 60.3 6.8 57 29-90 103-166 (362)
68 PF13202 EF-hand_5: EF hand; P 98.1 3.6E-06 7.9E-11 40.4 3.2 25 103-127 1-25 (25)
69 cd05031 S-100A10_like S-100A10 98.1 2.1E-05 4.6E-10 50.7 7.3 28 102-129 52-79 (94)
70 KOG0041|consensus 98.1 1.4E-05 3E-10 57.5 6.8 113 15-132 86-206 (244)
71 KOG0751|consensus 98.1 9.4E-05 2E-09 60.2 12.2 104 21-132 29-139 (694)
72 cd05023 S-100A11 S-100A11: S-1 98.1 1.1E-05 2.4E-10 51.5 5.1 59 29-92 11-80 (89)
73 KOG0030|consensus 98.0 7.4E-05 1.6E-09 50.8 9.1 105 65-173 12-118 (152)
74 cd05029 S-100A6 S-100A6: S-100 98.0 3.8E-05 8.2E-10 48.9 7.3 61 29-92 12-79 (88)
75 PF12763 EF-hand_4: Cytoskelet 97.9 7.7E-05 1.7E-09 49.0 7.4 65 99-172 8-72 (104)
76 PRK12309 transaldolase/EF-hand 97.9 5.5E-05 1.2E-09 61.0 8.1 55 98-171 331-385 (391)
77 PF14658 EF-hand_9: EF-hand do 97.8 0.00012 2.6E-09 43.5 6.2 58 70-127 4-62 (66)
78 PF14788 EF-hand_10: EF hand; 97.7 0.00014 3E-09 40.8 5.4 48 118-171 2-49 (51)
79 cd05024 S-100A10 S-100A10: A s 97.7 0.00013 2.9E-09 46.4 6.0 61 27-93 7-77 (91)
80 PF13202 EF-hand_5: EF hand; P 97.7 7.4E-05 1.6E-09 35.8 3.0 24 146-169 2-25 (25)
81 cd05030 calgranulins Calgranul 97.6 0.00024 5.1E-09 45.3 6.2 28 102-129 52-79 (88)
82 PF09279 EF-hand_like: Phospho 97.5 0.00047 1E-08 43.3 6.6 71 102-173 1-71 (83)
83 PF10591 SPARC_Ca_bdg: Secrete 97.5 2.6E-05 5.6E-10 52.1 0.5 59 102-168 55-113 (113)
84 PRK12309 transaldolase/EF-hand 97.5 0.00036 7.8E-09 56.4 6.7 52 66-131 336-387 (391)
85 PF12763 EF-hand_4: Cytoskelet 97.5 0.00011 2.3E-09 48.3 3.1 66 21-92 3-71 (104)
86 KOG0169|consensus 97.5 0.0024 5.2E-08 54.7 11.5 142 22-173 130-276 (746)
87 KOG0040|consensus 97.5 0.00036 7.8E-09 63.5 6.7 67 102-172 2254-2325(2399)
88 PF14788 EF-hand_10: EF hand; 97.4 0.00099 2.2E-08 37.4 5.6 49 81-130 2-50 (51)
89 KOG0377|consensus 97.4 0.00085 1.8E-08 54.1 7.3 68 64-131 547-617 (631)
90 KOG0046|consensus 97.3 0.00085 1.8E-08 55.1 7.1 65 102-170 20-84 (627)
91 smart00054 EFh EF-hand, calciu 97.1 0.00081 1.8E-08 32.2 3.1 27 103-129 2-28 (29)
92 KOG1029|consensus 97.1 0.0054 1.2E-07 52.8 9.3 61 102-170 196-256 (1118)
93 KOG2562|consensus 97.1 0.0016 3.4E-08 52.8 5.9 129 29-172 227-380 (493)
94 PF13405 EF-hand_6: EF-hand do 97.0 0.00037 7.9E-09 35.1 1.5 25 29-58 2-27 (31)
95 KOG4251|consensus 96.9 0.0014 2.9E-08 49.0 3.9 64 101-169 101-166 (362)
96 KOG0038|consensus 96.8 0.0069 1.5E-07 41.7 6.2 94 32-130 76-178 (189)
97 PF09069 EF-hand_3: EF-hand; 96.7 0.016 3.5E-07 36.9 7.2 75 101-180 3-84 (90)
98 PLN02952 phosphoinositide phos 96.6 0.035 7.7E-07 47.3 10.7 95 77-172 13-111 (599)
99 PF10591 SPARC_Ca_bdg: Secrete 96.4 0.0063 1.4E-07 40.6 4.2 53 68-123 58-110 (113)
100 smart00054 EFh EF-hand, calciu 96.4 0.007 1.5E-07 28.7 3.5 25 147-171 4-28 (29)
101 KOG0046|consensus 96.2 0.012 2.7E-07 48.6 5.5 70 19-94 10-87 (627)
102 KOG4347|consensus 96.1 0.013 2.8E-07 49.6 5.3 111 11-123 487-612 (671)
103 KOG1707|consensus 95.4 0.089 1.9E-06 44.4 7.5 137 21-170 188-376 (625)
104 KOG0035|consensus 95.3 0.2 4.2E-06 44.5 9.6 101 19-125 738-848 (890)
105 PF05042 Caleosin: Caleosin re 95.1 0.091 2E-06 37.4 6.0 128 33-168 13-163 (174)
106 KOG4578|consensus 94.8 0.021 4.6E-07 44.5 2.3 67 103-174 335-401 (421)
107 KOG4065|consensus 94.1 0.081 1.8E-06 35.0 3.5 32 19-56 60-91 (144)
108 KOG3866|consensus 93.8 0.2 4.2E-06 39.1 5.7 88 83-171 226-324 (442)
109 KOG3555|consensus 93.0 0.067 1.5E-06 42.1 2.0 62 101-172 250-311 (434)
110 KOG2243|consensus 92.9 0.18 3.9E-06 46.8 4.7 59 105-170 4061-4119(5019)
111 KOG1265|consensus 92.9 1.5 3.3E-05 39.2 10.0 114 46-171 162-299 (1189)
112 PF05517 p25-alpha: p25-alpha 92.8 0.76 1.6E-05 32.4 7.0 64 104-171 2-69 (154)
113 KOG1955|consensus 92.6 0.3 6.5E-06 40.5 5.3 61 102-170 232-292 (737)
114 PF05042 Caleosin: Caleosin re 92.1 0.79 1.7E-05 32.8 6.3 37 137-177 94-130 (174)
115 KOG4666|consensus 91.7 0.63 1.4E-05 36.6 5.8 94 29-129 261-359 (412)
116 PF08726 EFhand_Ca_insen: Ca2+ 91.2 0.27 5.9E-06 29.6 2.8 57 101-167 6-65 (69)
117 KOG4347|consensus 91.2 0.5 1.1E-05 40.4 5.2 78 81-165 535-612 (671)
118 PF14513 DAG_kinase_N: Diacylg 91.2 0.15 3.3E-06 35.2 1.9 81 1-114 1-82 (138)
119 KOG0039|consensus 91.1 0.95 2.1E-05 39.5 7.1 93 78-178 2-96 (646)
120 KOG0998|consensus 90.6 0.29 6.3E-06 43.9 3.6 138 22-173 123-347 (847)
121 KOG0042|consensus 90.2 0.63 1.4E-05 39.4 4.9 65 102-172 594-658 (680)
122 PF09279 EF-hand_like: Phospho 90.2 1.1 2.3E-05 27.8 5.1 63 67-130 3-70 (83)
123 KOG0035|consensus 89.5 1.4 2.9E-05 39.5 6.6 71 101-173 747-818 (890)
124 KOG1707|consensus 89.1 0.72 1.6E-05 39.2 4.6 89 20-113 307-398 (625)
125 KOG0169|consensus 89.1 3.6 7.9E-05 36.1 8.8 65 67-132 139-203 (746)
126 KOG4578|consensus 88.8 0.34 7.4E-06 38.1 2.3 62 69-130 338-399 (421)
127 KOG3555|consensus 88.6 2.3 4.9E-05 33.9 6.6 94 29-132 213-313 (434)
128 KOG1955|consensus 88.1 1.2 2.6E-05 37.1 5.1 67 21-92 224-293 (737)
129 KOG4286|consensus 88.0 4 8.7E-05 35.9 8.2 105 67-179 473-588 (966)
130 PLN02230 phosphoinositide phos 84.0 8.3 0.00018 33.4 8.3 73 99-172 27-103 (598)
131 PLN02223 phosphoinositide phos 83.6 8.3 0.00018 32.9 8.0 73 99-172 14-93 (537)
132 PLN02228 Phosphoinositide phos 83.3 6.8 0.00015 33.7 7.5 68 99-172 22-93 (567)
133 KOG1264|consensus 83.2 7.8 0.00017 34.7 7.8 145 20-171 135-293 (1267)
134 KOG0042|consensus 82.6 1.3 2.8E-05 37.6 2.9 70 21-95 586-660 (680)
135 PLN02222 phosphoinositide phos 81.3 8.4 0.00018 33.3 7.3 67 101-172 25-91 (581)
136 PF09373 PMBR: Pseudomurein-bi 79.6 1.8 4E-05 21.8 1.9 30 157-186 2-31 (33)
137 PF04876 Tenui_NCP: Tenuivirus 78.2 17 0.00038 25.3 6.7 63 113-178 95-167 (175)
138 PF09068 EF-hand_2: EF hand; 76.3 20 0.00043 24.4 6.7 29 102-130 98-126 (127)
139 KOG1029|consensus 73.4 6.3 0.00014 35.0 4.4 59 29-92 197-257 (1118)
140 PF08414 NADPH_Ox: Respiratory 72.9 3.9 8.5E-05 26.4 2.4 61 26-93 28-93 (100)
141 KOG3866|consensus 71.3 12 0.00026 29.5 5.1 23 105-127 300-322 (442)
142 PF08976 DUF1880: Domain of un 69.6 4.6 0.0001 26.9 2.2 33 135-171 3-35 (118)
143 KOG2871|consensus 68.2 4.7 0.0001 32.5 2.4 63 99-166 307-369 (449)
144 TIGR01639 P_fal_TIGR01639 Plas 67.2 23 0.00049 20.7 5.6 51 116-177 8-58 (61)
145 KOG2557|consensus 66.2 47 0.001 27.0 7.5 51 80-131 74-124 (427)
146 COG4103 Uncharacterized protei 65.2 25 0.00055 24.4 5.2 63 105-173 34-96 (148)
147 PF00404 Dockerin_1: Dockerin 60.4 15 0.00034 16.5 2.6 16 111-126 1-16 (21)
148 cd07313 terB_like_2 tellurium 60.1 18 0.00039 23.2 3.8 54 114-171 12-65 (104)
149 KOG4301|consensus 58.4 23 0.0005 28.4 4.6 101 69-180 115-226 (434)
150 KOG4004|consensus 58.3 4.7 0.0001 29.6 0.8 48 114-169 201-248 (259)
151 TIGR01848 PHA_reg_PhaR polyhyd 58.0 37 0.00079 22.3 4.7 22 107-128 35-56 (107)
152 PF07879 PHB_acc_N: PHB/PHA ac 57.5 8.7 0.00019 22.7 1.7 22 108-129 10-31 (64)
153 KOG4403|consensus 57.0 29 0.00062 28.8 5.0 26 103-128 70-95 (575)
154 PRK13344 spxA transcriptional 55.5 20 0.00044 24.4 3.5 64 108-177 28-91 (132)
155 cd07978 TAF13 The TATA Binding 55.2 53 0.0011 20.9 5.4 57 120-177 5-72 (92)
156 KOG3449|consensus 54.6 60 0.0013 21.4 5.3 41 103-145 3-43 (112)
157 KOG2243|consensus 54.3 19 0.0004 34.7 3.9 54 31-90 4061-4118(5019)
158 PF04783 DUF630: Protein of un 52.9 11 0.00023 22.1 1.5 17 1-17 1-17 (60)
159 cd02977 ArsC_family Arsenate R 52.5 37 0.0008 21.8 4.3 58 116-177 34-91 (105)
160 PRK12559 transcriptional regul 52.4 21 0.00046 24.3 3.2 57 116-177 35-91 (131)
161 PF12174 RST: RCD1-SRO-TAF4 (R 52.1 18 0.00038 21.8 2.5 50 79-132 7-56 (70)
162 PRK10026 arsenate reductase; P 51.9 34 0.00073 23.8 4.2 58 116-178 37-94 (141)
163 cd03034 ArsC_ArsC Arsenate Red 51.6 44 0.00096 21.9 4.6 58 116-178 34-91 (112)
164 PRK09430 djlA Dna-J like membr 49.9 1.2E+02 0.0026 23.5 9.0 99 46-147 69-174 (267)
165 PLN02952 phosphoinositide phos 47.4 75 0.0016 27.8 6.4 55 114-173 13-67 (599)
166 PF05517 p25-alpha: p25-alpha 47.0 99 0.0021 21.7 6.1 47 46-92 16-69 (154)
167 PF09824 ArsR: ArsR transcript 46.4 67 0.0014 22.8 4.9 68 102-178 73-140 (160)
168 cd03032 ArsC_Spx Arsenate Redu 45.2 85 0.0018 20.6 5.3 58 116-178 35-92 (115)
169 cd03035 ArsC_Yffb Arsenate Red 45.0 43 0.00093 21.8 3.7 56 117-178 35-90 (105)
170 PF01023 S_100: S-100/ICaBP ty 42.3 56 0.0012 17.6 5.0 36 141-176 5-42 (44)
171 PF14513 DAG_kinase_N: Diacylg 41.9 1.1E+02 0.0024 21.1 5.5 63 79-145 6-75 (138)
172 TIGR00014 arsC arsenate reduct 41.8 72 0.0016 21.0 4.5 59 116-178 34-92 (114)
173 cd03036 ArsC_like Arsenate Red 40.9 46 0.00099 21.8 3.4 67 107-178 26-93 (111)
174 PF13720 Acetyltransf_11: Udp 40.7 37 0.00081 21.1 2.8 52 20-79 26-80 (83)
175 PTZ00373 60S Acidic ribosomal 40.1 1.1E+02 0.0024 20.3 5.4 55 102-167 4-58 (112)
176 PF01885 PTS_2-RNA: RNA 2'-pho 38.7 55 0.0012 23.8 3.8 33 111-145 26-58 (186)
177 PF08414 NADPH_Ox: Respiratory 38.5 1.1E+02 0.0024 19.9 6.8 64 100-171 29-92 (100)
178 KOG0506|consensus 37.6 1.5E+02 0.0034 25.2 6.4 69 104-174 89-161 (622)
179 PF03979 Sigma70_r1_1: Sigma-7 37.6 41 0.00089 20.7 2.6 28 114-145 18-45 (82)
180 PF00690 Cation_ATPase_N: Cati 37.3 66 0.0014 18.8 3.5 34 103-137 6-39 (69)
181 PRK00819 RNA 2'-phosphotransfe 36.5 66 0.0014 23.3 3.8 33 111-145 27-59 (179)
182 TIGR00988 hip integration host 36.5 42 0.00092 21.1 2.6 45 119-165 2-48 (94)
183 PRK01655 spxA transcriptional 35.7 1.1E+02 0.0023 20.7 4.7 57 116-177 35-91 (131)
184 TIGR03573 WbuX N-acetyl sugar 35.1 1.1E+02 0.0024 24.6 5.3 42 115-168 300-341 (343)
185 PF05920 Homeobox_KN: Homeobox 35.1 73 0.0016 16.7 3.0 22 7-28 10-31 (40)
186 KOG0998|consensus 34.6 45 0.00097 30.5 3.3 67 21-92 276-345 (847)
187 cd06404 PB1_aPKC PB1 domain is 33.9 1.1E+02 0.0024 19.1 4.0 17 101-117 59-75 (83)
188 PF03960 ArsC: ArsC family; I 33.1 26 0.00055 22.9 1.2 63 110-177 26-88 (110)
189 COG5562 Phage envelope protein 33.0 41 0.0009 23.1 2.2 26 67-92 75-100 (137)
190 cd05833 Ribosomal_P2 Ribosomal 32.3 1.5E+02 0.0033 19.6 5.3 54 104-168 4-57 (109)
191 PF07308 DUF1456: Protein of u 32.2 1.2E+02 0.0025 18.2 4.8 12 118-129 30-41 (68)
192 PRK13510 sulfur transfer compl 31.2 29 0.00063 22.2 1.2 23 156-178 73-95 (95)
193 PF05099 TerB: Tellurite resis 30.8 22 0.00048 24.0 0.7 54 114-171 36-89 (140)
194 PRK00016 metal-binding heat sh 30.4 1.5E+02 0.0033 20.9 4.8 69 113-186 88-156 (159)
195 PRK14981 DNA-directed RNA poly 29.4 1.5E+02 0.0033 19.6 4.4 10 118-127 95-104 (112)
196 PLN02228 Phosphoinositide phos 28.8 2.8E+02 0.006 24.3 6.9 51 79-129 37-92 (567)
197 KOG3442|consensus 27.6 1.2E+02 0.0025 20.7 3.5 42 114-158 52-93 (132)
198 COG5394 Uncharacterized protei 27.1 2.4E+02 0.0052 20.2 5.3 21 107-127 44-64 (193)
199 TIGR00135 gatC glutamyl-tRNA(G 26.4 1.7E+02 0.0036 18.4 4.1 25 118-144 1-25 (93)
200 KOG4403|consensus 26.3 2E+02 0.0044 24.1 5.3 94 46-144 42-144 (575)
201 COG1043 LpxA Acyl-[acyl carrie 26.1 1.4E+02 0.003 23.0 4.1 52 20-79 203-257 (260)
202 COG1393 ArsC Arsenate reductas 26.0 2.1E+02 0.0045 19.1 5.0 56 117-177 37-92 (117)
203 PF08708 PriCT_1: Primase C te 25.9 1.5E+02 0.0032 17.4 4.6 16 135-150 52-67 (71)
204 KOG2301|consensus 25.8 41 0.00089 32.9 1.6 68 101-171 1417-1484(1592)
205 KOG3442|consensus 25.3 1.8E+02 0.004 19.7 4.1 35 6-40 54-91 (132)
206 COG3793 TerB Tellurite resista 24.5 2.5E+02 0.0055 19.6 5.8 60 115-174 38-101 (144)
207 PF09966 DUF2200: Uncharacteri 24.4 2.1E+02 0.0045 18.9 4.2 37 119-169 24-60 (111)
208 PF04558 tRNA_synt_1c_R1: Glut 24.4 1.4E+02 0.003 21.3 3.8 67 81-151 66-132 (164)
209 PF02761 Cbl_N2: CBL proto-onc 24.2 1.9E+02 0.0042 18.2 5.5 54 78-132 20-73 (85)
210 PF00427 PBS_linker_poly: Phyc 23.8 98 0.0021 21.2 2.8 22 157-178 42-63 (131)
211 PF08002 DUF1697: Protein of u 23.8 1.7E+02 0.0038 20.0 4.1 66 110-175 11-92 (137)
212 PF09336 Vps4_C: Vps4 C termin 23.4 1.1E+02 0.0023 17.8 2.6 26 117-144 29-54 (62)
213 cd03033 ArsC_15kD Arsenate Red 23.3 2E+02 0.0044 18.9 4.2 55 117-178 36-90 (113)
214 KOG4070|consensus 23.1 2.1E+02 0.0046 20.2 4.3 27 105-131 61-87 (180)
215 COG4359 Uncharacterized conser 23.1 3.2E+02 0.0069 20.2 5.9 80 76-173 9-89 (220)
216 PF09068 EF-hand_2: EF hand; 23.0 2.5E+02 0.0054 19.0 7.5 68 102-170 42-124 (127)
217 PF09851 SHOCT: Short C-termin 22.5 1.1E+02 0.0024 14.9 2.2 15 115-129 14-28 (31)
218 PF02864 STAT_bind: STAT prote 22.1 1E+02 0.0022 23.7 2.9 65 116-186 177-246 (254)
219 PF01799 Fer2_2: [2Fe-2S] bind 22.1 1.3E+02 0.0028 18.3 2.8 59 26-89 10-72 (75)
220 TIGR01616 nitro_assoc nitrogen 21.7 1.9E+02 0.0042 19.5 3.9 55 117-178 37-91 (126)
221 TIGR00987 himA integration hos 21.6 1.1E+02 0.0025 19.3 2.7 45 118-165 2-48 (96)
222 COG4860 Uncharacterized protei 21.3 1.9E+02 0.0042 20.2 3.7 34 116-153 92-125 (170)
223 PF07492 Trehalase_Ca-bi: Neut 21.2 30 0.00066 17.0 -0.1 17 148-164 4-20 (30)
224 PF12631 GTPase_Cys_C: Catalyt 21.2 83 0.0018 18.8 1.9 31 102-132 24-54 (73)
225 PF13075 DUF3939: Protein of u 21.1 29 0.00062 23.9 -0.2 47 117-173 9-55 (140)
226 PF08006 DUF1700: Protein of u 21.0 2.8E+02 0.0061 19.8 4.9 13 82-94 2-14 (181)
227 PRK00034 gatC aspartyl/glutamy 20.9 2.3E+02 0.0049 17.8 4.2 26 117-144 2-27 (95)
228 COG2080 CoxS Aerobic-type carb 20.8 2.8E+02 0.006 19.7 4.6 59 27-90 85-147 (156)
229 PF02885 Glycos_trans_3N: Glyc 20.7 1.9E+02 0.0041 16.8 5.6 25 117-142 14-38 (66)
230 PF11569 Homez: Homeodomain le 20.6 1E+02 0.0022 17.7 2.0 22 7-28 22-43 (56)
231 PRK00285 ihfA integration host 20.3 1.3E+02 0.0027 19.2 2.7 46 117-165 2-49 (99)
232 PF10668 Phage_terminase: Phag 20.3 2E+02 0.0043 16.8 3.4 23 104-127 10-32 (60)
233 PF06226 DUF1007: Protein of u 20.2 1.2E+02 0.0027 22.4 3.0 26 105-130 54-79 (212)
234 PF10897 DUF2713: Protein of u 20.1 2E+02 0.0044 21.3 3.8 42 78-119 175-227 (246)
No 1
>KOG0034|consensus
Probab=99.97 E-value=1.2e-28 Score=177.05 Aligned_cols=176 Identities=35% Similarity=0.625 Sum_probs=160.9
Q ss_pred CCCCCCCC-CHHHHHHHHhhcC----CCHHHHH-HHHHHHhhCCC-CCCCCCCCccchhhhhcccccccCChHHHHHHHh
Q psy17871 1 MGQSESQF-TEEELQDYEDLTY----FTKKEIL-AHQKFKSLAPE-KVGHNKNAKLPMTKILLYPQLRVNPFGDRICHIF 73 (189)
Q Consensus 1 mg~~~s~l-~~~~~~~~~~~~~----~~~~e~~-~~~~F~~~d~~-~~~~~~~g~i~~~e~~~l~~~~~~~~~~~l~~~~ 73 (189)
||+..|++ +.+++.++...+. ++..|+. ++..|.+++++ + +|.++.++|..+..+..+|...+|+..+
T Consensus 1 Mg~~~s~~~~~~~~~~~~~~~~~~~~fs~~EI~~L~~rF~kl~~~~~-----~g~lt~eef~~i~~~~~Np~~~rI~~~f 75 (187)
T KOG0034|consen 1 MGNLSSTLLSDEDLEELQMYTGDPTQFSANEIERLYERFKKLDRNNG-----DGYLTKEEFLSIPELALNPLADRIIDRF 75 (187)
T ss_pred CCcccccccchhhhHHHHhccCCCcccCHHHHHHHHHHHHHhccccc-----cCccCHHHHHHHHHHhcCcHHHHHHHHH
Confidence 89987764 4577888888888 9999999 99999999999 7 9999999999966888899999999999
Q ss_pred cCCCCCC-ccHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHH
Q psy17871 74 SSSHDGD-CTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLS--DNDIQHLIQNILD 150 (189)
Q Consensus 74 d~~~~g~-i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~--~~e~~~~i~~~~~ 150 (189)
+.+++|. |+|++|+..++.+.......++++.||++||.+++|+|+.+|+.+++..+... ..+ ++.+..+++.++.
T Consensus 76 ~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~-~~~~~~e~~~~i~d~t~~ 154 (187)
T KOG0034|consen 76 DTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGE-NDDMSDEQLEDIVDKTFE 154 (187)
T ss_pred hccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHcc-CCcchHHHHHHHHHHHHH
Confidence 9988888 99999999999998888888899999999999999999999999999998664 455 7889999999999
Q ss_pred HcCCCCCCcccHHHHHHHHHhChhHHhhhhhh
Q psy17871 151 EADLDDDGALSFAEFELFIEKSQDFAKWTSIQ 182 (189)
Q Consensus 151 ~~d~~~dg~I~~~eF~~~~~~~~~~~~~~~~~ 182 (189)
++|.++||+|+|+||.+++.+.|.+.+.+++.
T Consensus 155 e~D~d~DG~IsfeEf~~~v~~~P~~~~~m~~~ 186 (187)
T KOG0034|consen 155 EADTDGDGKISFEEFCKVVEKQPDLLEKMTIR 186 (187)
T ss_pred HhCCCCCCcCcHHHHHHHHHcCccHHHHcCCC
Confidence 99999999999999999999999999887764
No 2
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.95 E-value=3.9e-27 Score=163.97 Aligned_cols=148 Identities=26% Similarity=0.456 Sum_probs=134.9
Q ss_pred HHhhcCCCHHHHH-HHHHHHhhCCCCCCCCCCCccchhhhhc-ccccccCChHHHHHHHhcCC--CCCCccHHHHHHHHh
Q psy17871 16 YEDLTYFTKKEIL-AHQKFKSLAPEKVGHNKNAKLPMTKILL-YPQLRVNPFGDRICHIFSSS--HDGDCTFEDFLDMMS 91 (189)
Q Consensus 16 ~~~~~~~~~~e~~-~~~~F~~~d~~~~~~~~~g~i~~~e~~~-l~~~~~~~~~~~l~~~~d~~--~~g~i~~~ef~~~~~ 91 (189)
+...+.++++|++ ++++|..+|+++ +|.|+..++.. ++.+|.+++..++..++... +.+.|+|.+|+.++.
T Consensus 8 ~~~~~~~t~~qi~~lkeaF~l~D~d~-----~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~~~~~idf~~Fl~~ms 82 (160)
T COG5126 8 LLTFTQLTEEQIQELKEAFQLFDRDS-----DGLIDRNELGKILRSLGFNPSEAEINKLFEEIDAGNETVDFPEFLTVMS 82 (160)
T ss_pred hhhcccCCHHHHHHHHHHHHHhCcCC-----CCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccCCCCccCHHHHHHHHH
Confidence 6667899999999 999999999999 99999999999 99999999988776665442 568999999999999
Q ss_pred hcCCCCChhhHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHh
Q psy17871 92 VFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEK 171 (189)
Q Consensus 92 ~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~ 171 (189)
........+++++.||+.||.|++|+|+..||+.++..+|. .+++++++.+ ++.++.+++|.|+|++|...+..
T Consensus 83 ~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge--~~~deev~~l----l~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 83 VKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGE--RLSDEEVEKL----LKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred HHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcc--cCCHHHHHHH----HHhcCCCCCceEeHHHHHHHHhc
Confidence 98777777779999999999999999999999999999999 9999999999 79999999999999999999887
Q ss_pred Chh
Q psy17871 172 SQD 174 (189)
Q Consensus 172 ~~~ 174 (189)
.|.
T Consensus 157 ~~~ 159 (160)
T COG5126 157 SPT 159 (160)
T ss_pred cCC
Confidence 664
No 3
>KOG0038|consensus
Probab=99.95 E-value=1.4e-26 Score=155.59 Aligned_cols=182 Identities=46% Similarity=0.826 Sum_probs=166.1
Q ss_pred CCCCCCCCCHHHHHHHHhhcCCCHHHHH-HHHHHHhhCCCCCCCCCCC------ccchhhhhcccccccCChHHHHHHHh
Q psy17871 1 MGQSESQFTEEELQDYEDLTYFTKKEIL-AHQKFKSLAPEKVGHNKNA------KLPMTKILLYPQLRVNPFGDRICHIF 73 (189)
Q Consensus 1 mg~~~s~l~~~~~~~~~~~~~~~~~e~~-~~~~F~~~d~~~~~~~~~g------~i~~~e~~~l~~~~~~~~~~~l~~~~ 73 (189)
||++...+|.+++..++..+-|+.+++. +...|..+.++.+|..=.| .++.+.+.+++.+..+|..++|++.+
T Consensus 1 MGNK~~vFT~eqLd~YQDCTFFtrKdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~kMPELkenpfk~ri~e~F 80 (189)
T KOG0038|consen 1 MGNKQTVFTEEQLDEYQDCTFFTRKDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIEKMPELKENPFKRRICEVF 80 (189)
T ss_pred CCCccceeeHHHHhhhcccccccHHHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHhhChhhhcChHHHHHHHHh
Confidence 9999999999999999999999999999 9999999998877543222 56777777799999999999999999
Q ss_pred cCCCCCCccHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcC
Q psy17871 74 SSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEAD 153 (189)
Q Consensus 74 d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d 153 (189)
+.+++|.++|++|+.+++.++...+..-++..||+.||-|++++|-..+|.+.+..+-.. .++++|+..+.++++.++|
T Consensus 81 SeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~-eLs~eEv~~i~ekvieEAD 159 (189)
T KOG0038|consen 81 SEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRD-ELSDEEVELICEKVIEEAD 159 (189)
T ss_pred ccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhc-cCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999988877777799999999999999999999999999998766 8999999999999999999
Q ss_pred CCCCCcccHHHHHHHHHhChhHHhhhhhhh
Q psy17871 154 LDDDGALSFAEFELFIEKSQDFAKWTSIQR 183 (189)
Q Consensus 154 ~~~dg~I~~~eF~~~~~~~~~~~~~~~~~~ 183 (189)
.++||++++.+|.+++.+.|.++..|-|++
T Consensus 160 ~DgDgkl~~~eFe~~i~raPDFlsTFHIRI 189 (189)
T KOG0038|consen 160 LDGDGKLSFAEFEHVILRAPDFLSTFHIRI 189 (189)
T ss_pred CCCCCcccHHHHHHHHHhCcchHhhheecC
Confidence 999999999999999999999998887653
No 4
>KOG0027|consensus
Probab=99.91 E-value=1.8e-23 Score=147.49 Aligned_cols=139 Identities=27% Similarity=0.559 Sum_probs=122.9
Q ss_pred CCHHHHH-HHHHHHhhCCCCCCCCCCCccchhhhhc-ccccccCChHHHHHHH---hcCCCCCCccHHHHHHHHhhcCCC
Q psy17871 22 FTKKEIL-AHQKFKSLAPEKVGHNKNAKLPMTKILL-YPQLRVNPFGDRICHI---FSSSHDGDCTFEDFLDMMSVFSES 96 (189)
Q Consensus 22 ~~~~e~~-~~~~F~~~d~~~~~~~~~g~i~~~e~~~-l~~~~~~~~~~~l~~~---~d~~~~g~i~~~ef~~~~~~~~~~ 96 (189)
++..++. ++.+|..+|.++ +|+|+..++.. ++.+|..++..++..+ +|.+++|.|++.+|+.++......
T Consensus 2 ~~~~~~~el~~~F~~fD~d~-----~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~ 76 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDG-----DGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEE 76 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCC-----CCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcc
Confidence 4566677 899999999999 99999999999 9999999998776555 667899999999999999875443
Q ss_pred CCh----hhHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHh
Q psy17871 97 APK----PVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEK 171 (189)
Q Consensus 97 ~~~----~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~ 171 (189)
... .+.++.+|+.||+|++|+||..||+.+|..+|. +.+.+++..+ ++.+|.++||.|+|++|+.++..
T Consensus 77 ~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~--~~~~~e~~~m----i~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 77 KTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGE--KLTDEECKEM----IREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred cccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCC--cCCHHHHHHH----HHhcCCCCCCeEeHHHHHHHHhc
Confidence 322 348999999999999999999999999999999 8999999998 69999999999999999998874
No 5
>KOG0044|consensus
Probab=99.90 E-value=1e-22 Score=146.54 Aligned_cols=174 Identities=22% Similarity=0.401 Sum_probs=145.6
Q ss_pred CCCC-CCCCCHHHHHHHHhhcCCCHHHHH-HHHHHHhhCCCCCCCCCCCccchhhhhc-ccccccC----ChHHHHHHHh
Q psy17871 1 MGQS-ESQFTEEELQDYEDLTYFTKKEIL-AHQKFKSLAPEKVGHNKNAKLPMTKILL-YPQLRVN----PFGDRICHIF 73 (189)
Q Consensus 1 mg~~-~s~l~~~~~~~~~~~~~~~~~e~~-~~~~F~~~d~~~~~~~~~g~i~~~e~~~-l~~~~~~----~~~~~l~~~~ 73 (189)
||.+ +++++++.+.++.+.+.+++.++. +++-|..-+++ |.++.++|.. +...... ...+.+++.+
T Consensus 1 m~~~~~~~~~~~~~e~l~~~t~f~~~ei~~~Yr~Fk~~cP~-------G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~f 73 (193)
T KOG0044|consen 1 MGKKSNSKLQPESLEQLVQQTKFSKKEIQQWYRGFKNECPS-------GRLTLEEFREIYASFFPDGDASKYAELVFRTF 73 (193)
T ss_pred CCccccccCCcHHHHHHHHhcCCCHHHHHHHHHHhcccCCC-------CccCHHHHHHHHHHHCCCCCHHHHHHHHHHHh
Confidence 7876 789999999999999999999999 99999887764 5999999998 5544432 2356789999
Q ss_pred cCCCCCCccHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHH
Q psy17871 74 SSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTH-----HLSDNDIQHLIQNI 148 (189)
Q Consensus 74 d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~-----~~~~~e~~~~i~~~ 148 (189)
|.+++|.|+|.||+..++....+...+ +++-+|++||.||+|+|+++|+..++..+.... +..+.-.+..++.+
T Consensus 74 D~~~dg~i~F~Efi~als~~~rGt~ee-kl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~i 152 (193)
T KOG0044|consen 74 DKNKDGTIDFLEFICALSLTSRGTLEE-KLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKI 152 (193)
T ss_pred cccCCCCcCHHHHHHHHHHHcCCcHHH-HhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHH
Confidence 999999999999999999888766665 899999999999999999999999998864310 12233456677777
Q ss_pred HHHcCCCCCCcccHHHHHHHHHhChhHHhhhhhh
Q psy17871 149 LDEADLDDDGALSFAEFELFIEKSQDFAKWTSIQ 182 (189)
Q Consensus 149 ~~~~d~~~dg~I~~~eF~~~~~~~~~~~~~~~~~ 182 (189)
|+.+|.|+||.|++++|.......|.++..++..
T Consensus 153 f~k~D~n~Dg~lT~eef~~~~~~d~~i~~~l~~~ 186 (193)
T KOG0044|consen 153 FSKMDKNKDGKLTLEEFIEGCKADPSILRALEQD 186 (193)
T ss_pred HHHcCCCCCCcccHHHHHHHhhhCHHHHHHhhhc
Confidence 9999999999999999999999999998887653
No 6
>KOG0031|consensus
Probab=99.87 E-value=4.8e-21 Score=130.05 Aligned_cols=138 Identities=16% Similarity=0.327 Sum_probs=130.1
Q ss_pred CCCHHHHH-HHHHHHhhCCCCCCCCCCCccchhhhhc-ccccccCChHHHHHHHhcCCCCCCccHHHHHHHHhhcCCCCC
Q psy17871 21 YFTKKEIL-AHQKFKSLAPEKVGHNKNAKLPMTKILL-YPQLRVNPFGDRICHIFSSSHDGDCTFEDFLDMMSVFSESAP 98 (189)
Q Consensus 21 ~~~~~e~~-~~~~F~~~d~~~~~~~~~g~i~~~e~~~-l~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 98 (189)
.|++.||+ ++++|..+|.|+ ||.|+.+++.. +..+|..++.++|-+++.. ..|.|+|.-|+.++.....+.+
T Consensus 25 mf~q~QIqEfKEAF~~mDqnr-----DG~IdkeDL~d~~aSlGk~~~d~elDaM~~E-a~gPINft~FLTmfGekL~gtd 98 (171)
T KOG0031|consen 25 MFDQSQIQEFKEAFNLMDQNR-----DGFIDKEDLRDMLASLGKIASDEELDAMMKE-APGPINFTVFLTMFGEKLNGTD 98 (171)
T ss_pred HhhHHHHHHHHHHHHHHhccC-----CCcccHHHHHHHHHHcCCCCCHHHHHHHHHh-CCCCeeHHHHHHHHHHHhcCCC
Confidence 48899999 999999999999 99999999999 9999999999999999874 6789999999999999877778
Q ss_pred hhhHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHH
Q psy17871 99 KPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIE 170 (189)
Q Consensus 99 ~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~ 170 (189)
+++-+..||+.||.+++|.|..+.|+.+|...|. +++++|++.+ ++.+-.+..|.|+|..|+..++
T Consensus 99 pe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gD--r~~~eEV~~m----~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 99 PEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGD--RFTDEEVDEM----YREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcc--cCCHHHHHHH----HHhCCcccCCceeHHHHHHHHH
Confidence 8889999999999999999999999999999999 9999999998 8999999999999999999998
No 7
>PTZ00183 centrin; Provisional
Probab=99.86 E-value=1.7e-20 Score=133.04 Aligned_cols=143 Identities=22% Similarity=0.377 Sum_probs=124.1
Q ss_pred CCCHHHHH-HHHHHHhhCCCCCCCCCCCccchhhhhc-ccccccCChH---HHHHHHhcCCCCCCccHHHHHHHHhhcCC
Q psy17871 21 YFTKKEIL-AHQKFKSLAPEKVGHNKNAKLPMTKILL-YPQLRVNPFG---DRICHIFSSSHDGDCTFEDFLDMMSVFSE 95 (189)
Q Consensus 21 ~~~~~e~~-~~~~F~~~d~~~~~~~~~g~i~~~e~~~-l~~~~~~~~~---~~l~~~~d~~~~g~i~~~ef~~~~~~~~~ 95 (189)
.+++.+++ +..+|..+|+++ +|.|+..+|.. +..++..+.. ..++..++.+++|.|+|.+|+..+.....
T Consensus 10 ~~~~~~~~~~~~~F~~~D~~~-----~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~ 84 (158)
T PTZ00183 10 GLTEDQKKEIREAFDLFDTDG-----SGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLG 84 (158)
T ss_pred CCCHHHHHHHHHHHHHhCCCC-----CCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhc
Confidence 57788888 999999999999 99999999999 8877765544 45666788899999999999998876443
Q ss_pred CCChhhHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhChh
Q psy17871 96 SAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQD 174 (189)
Q Consensus 96 ~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~~ 174 (189)
.......++.+|+.+|.+++|.|+.+|+..++..++. +++..++..+ +..++.+++|.|+|++|..++.+.|.
T Consensus 85 ~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~--~l~~~~~~~~----~~~~d~~~~g~i~~~ef~~~~~~~~~ 157 (158)
T PTZ00183 85 ERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGE--TITDEELQEM----IDEADRNGDGEISEEEFYRIMKKTNL 157 (158)
T ss_pred CCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCC--CCCHHHHHHH----HHHhCCCCCCcCcHHHHHHHHhcccC
Confidence 3344458899999999999999999999999999888 8999998888 79999999999999999999998775
No 8
>PTZ00184 calmodulin; Provisional
Probab=99.85 E-value=9.1e-20 Score=127.90 Aligned_cols=139 Identities=21% Similarity=0.462 Sum_probs=119.7
Q ss_pred CCCHHHHH-HHHHHHhhCCCCCCCCCCCccchhhhhc-ccccccCChH---HHHHHHhcCCCCCCccHHHHHHHHhhcCC
Q psy17871 21 YFTKKEIL-AHQKFKSLAPEKVGHNKNAKLPMTKILL-YPQLRVNPFG---DRICHIFSSSHDGDCTFEDFLDMMSVFSE 95 (189)
Q Consensus 21 ~~~~~e~~-~~~~F~~~d~~~~~~~~~g~i~~~e~~~-l~~~~~~~~~---~~l~~~~d~~~~g~i~~~ef~~~~~~~~~ 95 (189)
.+++++++ +...|..+|+++ +|.|+.++|.. +..++..+.. ..++..++.+++|.|+|++|+..+.....
T Consensus 4 ~~~~~~~~~~~~~F~~~D~~~-----~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~ 78 (149)
T PTZ00184 4 QLTEEQIAEFKEAFSLFDKDG-----DGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMK 78 (149)
T ss_pred ccCHHHHHHHHHHHHHHcCCC-----CCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhcc
Confidence 46777788 899999999999 99999999999 7766665554 45677788899999999999999887544
Q ss_pred CCChhhHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHH
Q psy17871 96 SAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIE 170 (189)
Q Consensus 96 ~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~ 170 (189)
.......+..+|+.+|.+++|.|+.+|+..++..++. +++.+++..+ +...|.+++|.|+|++|+.++.
T Consensus 79 ~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~----~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 79 DTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGE--KLTDEEVDEM----IREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred CCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCC--CCCHHHHHHH----HHhcCCCCCCcCcHHHHHHHHh
Confidence 3445558899999999999999999999999999887 8899888887 7899999999999999998775
No 9
>KOG0030|consensus
Probab=99.83 E-value=2.4e-19 Score=119.88 Aligned_cols=138 Identities=18% Similarity=0.347 Sum_probs=117.1
Q ss_pred CCCHHHHH-HHHHHHhhCCCCCCCCCCCccchhhhhc-ccccccCChHHHHHHHhcC-CCC----CCccHHHHHHHHhhc
Q psy17871 21 YFTKKEIL-AHQKFKSLAPEKVGHNKNAKLPMTKILL-YPQLRVNPFGDRICHIFSS-SHD----GDCTFEDFLDMMSVF 93 (189)
Q Consensus 21 ~~~~~e~~-~~~~F~~~d~~~~~~~~~g~i~~~e~~~-l~~~~~~~~~~~l~~~~d~-~~~----g~i~~~ef~~~~~~~ 93 (189)
.+++++.. ++++|..||..+ ||+|+..+... ++++|.+|+..++...+.. ..+ .+++|++|+.+++.+
T Consensus 4 ~~~~d~~~e~ke~F~lfD~~g-----D~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~v 78 (152)
T KOG0030|consen 4 AFTPDQMEEFKEAFLLFDRTG-----DGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQV 78 (152)
T ss_pred ccCcchHHHHHHHHHHHhccC-----cccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHH
Confidence 35666677 899999999999 99999999999 9999999999999888765 223 689999999999876
Q ss_pred CCC--CChhhHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHH
Q psy17871 94 SES--APKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIE 170 (189)
Q Consensus 94 ~~~--~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~ 170 (189)
... ....+.....++.||++++|+|...||+++|.++|. .++++|++.+ +.-. .|.+|.|+|+.|++.+.
T Consensus 79 aknk~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGe--kl~eeEVe~L----lag~-eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 79 AKNKDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGE--KLTEEEVEEL----LAGQ-EDSNGCINYEAFVKHIM 150 (152)
T ss_pred HhccccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHh--hccHHHHHHH----Hccc-cccCCcCcHHHHHHHHh
Confidence 432 223347788999999999999999999999999999 9999999998 3333 46678999999998765
No 10
>KOG0028|consensus
Probab=99.82 E-value=5.6e-19 Score=120.87 Aligned_cols=142 Identities=25% Similarity=0.444 Sum_probs=126.3
Q ss_pred cCCCHHHHH-HHHHHHhhCCCCCCCCCCCccchhhhhc-ccccccCChHHHHHHH---hcCCCCCCccHHHHHHHHhhcC
Q psy17871 20 TYFTKKEIL-AHQKFKSLAPEKVGHNKNAKLPMTKILL-YPQLRVNPFGDRICHI---FSSSHDGDCTFEDFLDMMSVFS 94 (189)
Q Consensus 20 ~~~~~~e~~-~~~~F~~~d~~~~~~~~~g~i~~~e~~~-l~~~~~~~~~~~l~~~---~d~~~~g~i~~~ef~~~~~~~~ 94 (189)
+.+++++-+ ++..|..+++++ +|+|+..++.. ++++|+.+...+|..+ ++.++.|.|+|++|+..+....
T Consensus 25 ~~l~~~q~q~i~e~f~lfd~~~-----~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~ 99 (172)
T KOG0028|consen 25 SELTEEQKQEIKEAFELFDPDM-----AGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKL 99 (172)
T ss_pred ccccHHHHhhHHHHHHhhccCC-----CCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHH
Confidence 357777877 999999999999 99999999988 9999999998886666 4557789999999999988755
Q ss_pred CCCChhhHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhC
Q psy17871 95 ESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKS 172 (189)
Q Consensus 95 ~~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~ 172 (189)
...+..+.+..+|+.+|-|++|.|+..+|+.+...+|. .++++++.+|| .+++.+++|.|+-++|...+++-
T Consensus 100 ~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLge--nltD~El~eMI----eEAd~d~dgevneeEF~~imk~t 171 (172)
T KOG0028|consen 100 GERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGE--NLTDEELMEMI----EEADRDGDGEVNEEEFIRIMKKT 171 (172)
T ss_pred hccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCc--cccHHHHHHHH----HHhcccccccccHHHHHHHHhcC
Confidence 44445569999999999999999999999999999999 89999999994 99999999999999999988753
No 11
>KOG0037|consensus
Probab=99.77 E-value=9.5e-18 Score=120.70 Aligned_cols=134 Identities=16% Similarity=0.256 Sum_probs=118.3
Q ss_pred HHHHHHhhCCCCCCCCCCCccchhhhhc-ccccccCC----hHHHHHHHhcCCCCCCccHHHHHHHHhhcCCCCChhhHH
Q psy17871 29 AHQKFKSLAPEKVGHNKNAKLPMTKILL-YPQLRVNP----FGDRICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKA 103 (189)
Q Consensus 29 ~~~~F~~~d~~~~~~~~~g~i~~~e~~~-l~~~~~~~----~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l 103 (189)
+...|...|.++ .|.|+.+|+++ |......+ ++.-|..++|.+..|.|+|+||..+|..+. .+
T Consensus 59 ~~~~f~~vD~d~-----sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~-------~W 126 (221)
T KOG0037|consen 59 LAGWFQSVDRDR-----SGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYIN-------QW 126 (221)
T ss_pred HHHHHHhhCccc-----cccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH-------HH
Confidence 788899999999 99999999999 66444443 567788899999999999999999998764 88
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhChhHHhhhh
Q psy17871 104 EHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQDFAKWTS 180 (189)
Q Consensus 104 ~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~~~~~~~~ 180 (189)
+.+|+.+|+|++|.|+..||+++|..+|. .++++-.+.+ ++..|..+.|.|.|++|+.++...+.+.+.|.
T Consensus 127 r~vF~~~D~D~SG~I~~sEL~~Al~~~Gy--~Lspq~~~~l----v~kyd~~~~g~i~FD~FI~ccv~L~~lt~~Fr 197 (221)
T KOG0037|consen 127 RNVFRTYDRDRSGTIDSSELRQALTQLGY--RLSPQFYNLL----VRKYDRFGGGRIDFDDFIQCCVVLQRLTEAFR 197 (221)
T ss_pred HHHHHhcccCCCCcccHHHHHHHHHHcCc--CCCHHHHHHH----HHHhccccCCceeHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 8999877776 68888777899999999999998888766653
No 12
>KOG0036|consensus
Probab=99.60 E-value=1.5e-14 Score=112.95 Aligned_cols=129 Identities=14% Similarity=0.287 Sum_probs=115.0
Q ss_pred HHHHHHhhCCCCCCCCCCCccchhhhhc-ccccccC-Ch---HHHHHHHhcCCCCCCccHHHHHHHHhhcCCCCChhhHH
Q psy17871 29 AHQKFKSLAPEKVGHNKNAKLPMTKILL-YPQLRVN-PF---GDRICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKA 103 (189)
Q Consensus 29 ~~~~F~~~d~~~~~~~~~g~i~~~e~~~-l~~~~~~-~~---~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l 103 (189)
+..+|+.+|.++ +|.++..++.+ +..+... +. ...++...|.+.+|+|+|.+|..++... +.++
T Consensus 16 ~~~lf~~lD~~~-----~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~------E~~l 84 (463)
T KOG0036|consen 16 IRCLFKELDSKN-----DGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNK------ELEL 84 (463)
T ss_pred HHHHHHHhccCC-----CCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHh------HHHH
Confidence 899999999999 99999999998 6555544 22 3568888899999999999999999653 4588
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhChh
Q psy17871 104 EHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQD 174 (189)
Q Consensus 104 ~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~~ 174 (189)
..+|+.+|.+++|.|+.+|+.+.|..+|. .++++++..+ ++.+|.++++.|++++|..++.-+|.
T Consensus 85 ~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi--~l~de~~~k~----~e~~d~~g~~~I~~~e~rd~~ll~p~ 149 (463)
T KOG0036|consen 85 YRIFQSIDLEHDGKIDPNEIWRYLKDLGI--QLSDEKAAKF----FEHMDKDGKATIDLEEWRDHLLLYPE 149 (463)
T ss_pred HHHHhhhccccCCccCHHHHHHHHHHhCC--ccCHHHHHHH----HHHhccCCCeeeccHHHHhhhhcCCh
Confidence 99999999999999999999999999999 8999999887 79999999999999999999998884
No 13
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.54 E-value=4.3e-14 Score=85.65 Aligned_cols=66 Identities=35% Similarity=0.649 Sum_probs=62.1
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHH
Q psy17871 102 KAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFI 169 (189)
Q Consensus 102 ~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~ 169 (189)
+++.+|+.+|++++|+|+.+||..++..++. ..+..++..+++.+++.+|.+++|.|+|+||.+++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~--~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGR--DMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTS--HSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcc--cccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 4789999999999999999999999999998 78899999999999999999999999999999875
No 14
>PLN02964 phosphatidylserine decarboxylase
Probab=99.49 E-value=5.6e-13 Score=111.81 Aligned_cols=133 Identities=23% Similarity=0.408 Sum_probs=108.6
Q ss_pred CCCCCHHHHHHHHhh--cCCCHHHHH-HHHHHHhhCCCCCCCCCCCccchhhhhc-ccccc-cCChH------HHHHHHh
Q psy17871 5 ESQFTEEELQDYEDL--TYFTKKEIL-AHQKFKSLAPEKVGHNKNAKLPMTKILL-YPQLR-VNPFG------DRICHIF 73 (189)
Q Consensus 5 ~s~l~~~~~~~~~~~--~~~~~~e~~-~~~~F~~~d~~~~~~~~~g~i~~~e~~~-l~~~~-~~~~~------~~l~~~~ 73 (189)
.+++++.++..+.+. +.++..|++ +++.|..+|+++ +|.+ +.. +..+| ..++. .+++..+
T Consensus 118 ~~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dg-----dG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~ 188 (644)
T PLN02964 118 TNRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSS-----SNKV----VGSIFVSCSIEDPVETERSFARRILAIV 188 (644)
T ss_pred cCCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCC-----CCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHh
Confidence 356899999999988 899999999 999999999999 9997 555 67777 35554 3567778
Q ss_pred cCCCCCCccHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCCCcccHHHHHHHHHH-------------HhCCCCCCH-H
Q psy17871 74 SSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDR-------------LTGTHHLSD-N 139 (189)
Q Consensus 74 d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~-------------~~~~~~~~~-~ 139 (189)
|.+++|.|+|.||+.++..+... ..++++..+|+.+|+|++|+|+.+||.+++.. ++. .++. +
T Consensus 189 D~DgdG~IdfdEFl~lL~~lg~~-~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~~~~~~~~~~cp~cg~--~l~~~~ 265 (644)
T PLN02964 189 DYDEDGQLSFSEFSDLIKAFGNL-VAANKKEELFKAADLNGDGVVTIDELAALLALQQEQEPIINNCPVCGE--ALGVSD 265 (644)
T ss_pred CCCCCCeEcHHHHHHHHHHhccC-CCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcccCcchhhhchhhcC--cccchh
Confidence 99999999999999999876533 34458999999999999999999999999988 555 5666 6
Q ss_pred HHHHHHHHHH
Q psy17871 140 DIQHLIQNIL 149 (189)
Q Consensus 140 e~~~~i~~~~ 149 (189)
+++.||+..+
T Consensus 266 ~~~~iiH~~~ 275 (644)
T PLN02964 266 KLNAMIHMTL 275 (644)
T ss_pred hHHHHHHHHH
Confidence 6777774433
No 15
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.40 E-value=1.7e-12 Score=82.84 Aligned_cols=68 Identities=21% Similarity=0.380 Sum_probs=61.1
Q ss_pred HHHHHHHHhcC-CCCCcccHHHHHHHHHH-HhCCCCCCH-HHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhChhH
Q psy17871 102 KAEHAFRIFDF-DGDDMLGMTDLKQIIDR-LTGTHHLSD-NDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQDF 175 (189)
Q Consensus 102 ~l~~~F~~~D~-~~~G~I~~~el~~~l~~-~~~~~~~~~-~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~~~ 175 (189)
.++.+|+.||+ +++|+|+..||+.++.. ++. .+++ ++++.+ ++.+|.|+||.|+|+||..++.+.-..
T Consensus 9 ~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~--~ls~~~~v~~m----i~~~D~d~DG~I~F~EF~~l~~~l~~~ 79 (89)
T cd05022 9 TLVSNFHKASVKGGKESLTASEFQELLTQQLPH--LLKDVEGLEEK----MKNLDVNQDSKLSFEEFWELIGELAKA 79 (89)
T ss_pred HHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhh--hccCHHHHHHH----HHHhCCCCCCCCcHHHHHHHHHHHHHH
Confidence 68899999999 99999999999999999 777 6887 788887 799999999999999999998876543
No 16
>KOG4223|consensus
Probab=99.31 E-value=1.9e-11 Score=93.12 Aligned_cols=127 Identities=22% Similarity=0.308 Sum_probs=100.5
Q ss_pred HHHHHHhhCCCCCCCCCCCccchhhhhc-ccccccCChHH-----HHHHHhcCCCCCCccHHHHHHHHhhcCCCCChh--
Q psy17871 29 AHQKFKSLAPEKVGHNKNAKLPMTKILL-YPQLRVNPFGD-----RICHIFSSSHDGDCTFEDFLDMMSVFSESAPKP-- 100 (189)
Q Consensus 29 ~~~~F~~~d~~~~~~~~~g~i~~~e~~~-l~~~~~~~~~~-----~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~-- 100 (189)
-.+.|+..|.++ +|.+|.++|.. +..-. .+... +-..=+|+|++|.|+++||+.-+.........+
T Consensus 165 De~rFk~AD~d~-----dg~lt~EEF~aFLHPEe-~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeW 238 (325)
T KOG4223|consen 165 DEERFKAADQDG-----DGSLTLEEFTAFLHPEE-HPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEW 238 (325)
T ss_pred HHHHHhhcccCC-----CCcccHHHHHhccChhh-cchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCccc
Confidence 678899999999 99999999999 55433 33333 333347889999999999999887755322221
Q ss_pred --hHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHH
Q psy17871 101 --VKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFEL 167 (189)
Q Consensus 101 --~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~ 167 (189)
..-...+..+|+|++|+++.+|+++++...+. .....++..+ +-..|.|+||++|++|-+.
T Consensus 239 v~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~--d~A~~EA~hL----~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 239 VLTEREQFFEFRDKNKDGKLDGDELLDWILPSEQ--DHAKAEARHL----LHEADEDKDGKLSKEEILE 301 (325)
T ss_pred ccccHHHHHHHhhcCCCCccCHHHHhcccCCCCc--cHHHHHHHHH----hhhhccCccccccHHHHhh
Confidence 13357888899999999999999999977666 6778888888 6999999999999998654
No 17
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.30 E-value=2.1e-11 Score=77.80 Aligned_cols=67 Identities=24% Similarity=0.446 Sum_probs=59.4
Q ss_pred HHHHHHHHhc-CCCCC-cccHHHHHHHHHH-----HhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhChh
Q psy17871 102 KAEHAFRIFD-FDGDD-MLGMTDLKQIIDR-----LTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQD 174 (189)
Q Consensus 102 ~l~~~F~~~D-~~~~G-~I~~~el~~~l~~-----~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~~ 174 (189)
.++.+|+.|| ++++| .|+.+||+.+|+. ++. ..++++++.+ ++.+|.|++|.|+|++|+.++...-.
T Consensus 9 ~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~--~~~~~~v~~~----i~~~D~n~dG~v~f~eF~~li~~~~~ 82 (88)
T cd05027 9 ALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEE--IKEQEVVDKV----METLDSDGDGECDFQEFMAFVAMVTT 82 (88)
T ss_pred HHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcC--CCCHHHHHHH----HHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 6889999998 89999 5999999999999 676 7888888888 68999999999999999998875443
No 18
>KOG2562|consensus
Probab=99.25 E-value=1.2e-10 Score=92.58 Aligned_cols=142 Identities=17% Similarity=0.281 Sum_probs=109.2
Q ss_pred CCCHHHHH-HHHHHHhhCCCCCCCCCCCccchhhhhc-ccccccCChHHHHHHHhcC----CCCCCccHHHHHHHHhhcC
Q psy17871 21 YFTKKEIL-AHQKFKSLAPEKVGHNKNAKLPMTKILL-YPQLRVNPFGDRICHIFSS----SHDGDCTFEDFLDMMSVFS 94 (189)
Q Consensus 21 ~~~~~e~~-~~~~F~~~d~~~~~~~~~g~i~~~e~~~-l~~~~~~~~~~~l~~~~d~----~~~g~i~~~ef~~~~~~~~ 94 (189)
.||.+... ++..|..+|+++ +|.|+.+++.. -.........++||..+.+ ..+|+++|++|+.++....
T Consensus 271 ~FS~e~f~viy~kFweLD~Dh-----d~lidk~~L~ry~d~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e 345 (493)
T KOG2562|consen 271 YFSYEHFYVIYCKFWELDTDH-----DGLIDKEDLKRYGDHTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEE 345 (493)
T ss_pred heeHHHHHHHHHHHhhhcccc-----ccccCHHHHHHHhccchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhc
Confidence 57777777 888899999999 99999999998 3333335566777774333 4688999999999998876
Q ss_pred CCCChhhHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHH
Q psy17871 95 ESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTH---HLSDNDIQHLIQNILDEADLDDDGALSFAEFELF 168 (189)
Q Consensus 95 ~~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~---~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~ 168 (189)
...... .+.+.|+.+|.+++|.|+.+|++-+........ ...+--++.++.++++.+.+...++|+..+|...
T Consensus 346 ~k~t~~-SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~s 421 (493)
T KOG2562|consen 346 DKDTPA-SLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKGS 421 (493)
T ss_pred cCCCcc-chhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhhc
Confidence 655555 899999999999999999999998876643210 1112223555666689999888999999999884
No 19
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.23 E-value=8e-11 Score=76.30 Aligned_cols=72 Identities=18% Similarity=0.348 Sum_probs=61.3
Q ss_pred hHHHHHHHHhcC-CC-CCcccHHHHHHHHHH-----HhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCh
Q psy17871 101 VKAEHAFRIFDF-DG-DDMLGMTDLKQIIDR-----LTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQ 173 (189)
Q Consensus 101 ~~l~~~F~~~D~-~~-~G~I~~~el~~~l~~-----~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~ 173 (189)
..+..+|..||. ++ +|.|+.+||+.+|.. ++. ..+.++++.+ ++.+|.+++|.|+|++|+.++....
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~--~~s~~ei~~~----~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKN--QKDPMAVDKI----MKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhc--cccHHHHHHH----HHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 368899999997 97 799999999999986 344 6788888887 7999999999999999999998777
Q ss_pred hHHhh
Q psy17871 174 DFAKW 178 (189)
Q Consensus 174 ~~~~~ 178 (189)
.+.+.
T Consensus 82 ~~~~~ 86 (94)
T cd05031 82 IACEE 86 (94)
T ss_pred HHHHH
Confidence 66554
No 20
>KOG0027|consensus
Probab=99.20 E-value=3.7e-10 Score=79.58 Aligned_cols=101 Identities=15% Similarity=0.348 Sum_probs=85.6
Q ss_pred HHHHHHHhcCCCCCCccHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCC-----HHH
Q psy17871 66 GDRICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLS-----DND 140 (189)
Q Consensus 66 ~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~-----~~e 140 (189)
...+|.++|.+++|.|+-.++-..+..+....... .+..++..+|.+++|.|+.+||..++..... ..+ .++
T Consensus 10 l~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~-el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~--~~~~~~~~~~e 86 (151)
T KOG0027|consen 10 LKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEE-ELRDLIKEIDLDGDGTIDFEEFLDLMEKLGE--EKTDEEASSEE 86 (151)
T ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHH-HHHHHHHHhCCCCCCeEcHHHHHHHHHhhhc--ccccccccHHH
Confidence 45788999999999999999999998876654444 8999999999999999999999999988766 333 335
Q ss_pred HHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCh
Q psy17871 141 IQHLIQNILDEADLDDDGALSFAEFELFIEKSQ 173 (189)
Q Consensus 141 ~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~ 173 (189)
+... |+.+|.+++|.|+..++.+++++..
T Consensus 87 l~ea----F~~fD~d~~G~Is~~el~~~l~~lg 115 (151)
T KOG0027|consen 87 LKEA----FRVFDKDGDGFISASELKKVLTSLG 115 (151)
T ss_pred HHHH----HHHHccCCCCcCcHHHHHHHHHHhC
Confidence 5555 9999999999999999999998654
No 21
>KOG0377|consensus
Probab=99.20 E-value=2.4e-10 Score=90.44 Aligned_cols=133 Identities=20% Similarity=0.306 Sum_probs=97.7
Q ss_pred HHHHHHhhCCCCCCCCCCCccchhhhhc-cc-ccccCChHHHHHH-HhcCCCCCCccHHHHHHHHhhcCC--C-------
Q psy17871 29 AHQKFKSLAPEKVGHNKNAKLPMTKILL-YP-QLRVNPFGDRICH-IFSSSHDGDCTFEDFLDMMSVFSE--S------- 96 (189)
Q Consensus 29 ~~~~F~~~d~~~~~~~~~g~i~~~e~~~-l~-~~~~~~~~~~l~~-~~d~~~~g~i~~~ef~~~~~~~~~--~------- 96 (189)
+...|+++|..+ .|+|+..+-+. +. ..+.+..-.-+.- +...+.+|.|.|...+..+..-.. .
T Consensus 466 L~~eF~~~D~~k-----sG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slve 540 (631)
T KOG0377|consen 466 LEDEFRKYDPKK-----SGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVE 540 (631)
T ss_pred HHHHHHhcChhh-----cCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHH
Confidence 678899999999 99999988777 32 2233322222222 233366789999988877754110 0
Q ss_pred --CChhhHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHH
Q psy17871 97 --APKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTH--HLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIE 170 (189)
Q Consensus 97 --~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~--~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~ 170 (189)
......+..+|+.+|+|++|.||.+||++++..++.+. +++++++.++ -+.+|.|+||.|+++||+.+++
T Consensus 541 tLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~l----a~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 541 TLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILEL----ARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred HHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHH----HHhhccCCCCcccHHHHHHHHh
Confidence 01123578999999999999999999999998876632 5677777777 6889999999999999999876
No 22
>PTZ00183 centrin; Provisional
Probab=99.19 E-value=7.4e-10 Score=78.24 Aligned_cols=100 Identities=13% Similarity=0.205 Sum_probs=81.0
Q ss_pred HHHHHHhcCCCCCCccHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q psy17871 67 DRICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQ 146 (189)
Q Consensus 67 ~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~ 146 (189)
..+|..+|.+++|.|++.+|...+........ ...+..+|..+|.+++|.|+.+|+..++...... ....+.+..+
T Consensus 20 ~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~-~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~-~~~~~~l~~~-- 95 (158)
T PTZ00183 20 REAFDLFDTDGSGTIDPKELKVAMRSLGFEPK-KEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGE-RDPREEILKA-- 95 (158)
T ss_pred HHHHHHhCCCCCCcccHHHHHHHHHHhCCCCC-HHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcC-CCcHHHHHHH--
Confidence 56678889999999999999999876543233 3478999999999999999999999988765432 4555555555
Q ss_pred HHHHHcCCCCCCcccHHHHHHHHHhC
Q psy17871 147 NILDEADLDDDGALSFAEFELFIEKS 172 (189)
Q Consensus 147 ~~~~~~d~~~dg~I~~~eF~~~~~~~ 172 (189)
|..+|.+++|.|+.++|..++...
T Consensus 96 --F~~~D~~~~G~i~~~e~~~~l~~~ 119 (158)
T PTZ00183 96 --FRLFDDDKTGKISLKNLKRVAKEL 119 (158)
T ss_pred --HHHhCCCCCCcCcHHHHHHHHHHh
Confidence 899999999999999999998753
No 23
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.19 E-value=1.9e-10 Score=74.27 Aligned_cols=70 Identities=19% Similarity=0.341 Sum_probs=56.5
Q ss_pred HHHHHHHHhc-CCCCC-cccHHHHHHHHHHH-hCC--CCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhChhH
Q psy17871 102 KAEHAFRIFD-FDGDD-MLGMTDLKQIIDRL-TGT--HHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQDF 175 (189)
Q Consensus 102 ~l~~~F~~~D-~~~~G-~I~~~el~~~l~~~-~~~--~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~~~ 175 (189)
.+..+|+.|| +|++| +|+..||+.++... +.. ...++.+++.+ ++.+|.|++|.|+|+||+.++...-..
T Consensus 11 ~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i----~~elD~n~dG~Idf~EF~~l~~~l~~~ 85 (93)
T cd05026 11 TLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKI----MNDLDSNKDNEVDFNEFVVLVAALTVA 85 (93)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHH----HHHhCCCCCCCCCHHHHHHHHHHHHHH
Confidence 6778899999 78998 59999999999773 210 03466677777 799999999999999999999876543
No 24
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.19 E-value=1.8e-10 Score=74.37 Aligned_cols=75 Identities=19% Similarity=0.342 Sum_probs=61.2
Q ss_pred hHHHHHHHHhc-CCCCC-cccHHHHHHHHHH-HhCCC--CCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhChhH
Q psy17871 101 VKAEHAFRIFD-FDGDD-MLGMTDLKQIIDR-LTGTH--HLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQDF 175 (189)
Q Consensus 101 ~~l~~~F~~~D-~~~~G-~I~~~el~~~l~~-~~~~~--~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~~~ 175 (189)
+.++.+|+.|| .+++| .|+..|++.+|+. ++... ..+.++++.+ +..+|.+++|.|+|++|+.++...-..
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i----~~~~D~d~~G~I~f~eF~~l~~~~~~~ 84 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKI----MKELDENGDGEVDFQEFVVLVAALTVA 84 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHH----HHHHCCCCCCcCcHHHHHHHHHHHHHH
Confidence 47899999997 99999 5999999999986 54310 3467777777 799999999999999999999877666
Q ss_pred Hhhh
Q psy17871 176 AKWT 179 (189)
Q Consensus 176 ~~~~ 179 (189)
...+
T Consensus 85 ~~~~ 88 (92)
T cd05025 85 CNNF 88 (92)
T ss_pred HHHH
Confidence 5544
No 25
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.17 E-value=2.2e-10 Score=73.11 Aligned_cols=67 Identities=22% Similarity=0.455 Sum_probs=58.9
Q ss_pred HHHHHHHHhcC-CC-CCcccHHHHHHHHHH---HhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhChh
Q psy17871 102 KAEHAFRIFDF-DG-DDMLGMTDLKQIIDR---LTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQD 174 (189)
Q Consensus 102 ~l~~~F~~~D~-~~-~G~I~~~el~~~l~~---~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~~ 174 (189)
.+..+|..||. +| +|+|+.+||++++.. +|. .++++++..+ ++.+|.+++|+|+|++|+.++.....
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~--k~t~~ev~~m----~~~~D~d~dG~Idf~EFv~lm~~l~~ 82 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGS--KLQDAEIAKL----MEDLDRNKDQEVNFQEYVTFLGALAL 82 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCC--CCCHHHHHHH----HHHhcCCCCCCCcHHHHHHHHHHHHH
Confidence 57789999998 67 899999999999974 566 7899999998 79999999999999999998886544
No 26
>PTZ00184 calmodulin; Provisional
Probab=99.13 E-value=1.5e-09 Score=75.82 Aligned_cols=99 Identities=17% Similarity=0.314 Sum_probs=79.2
Q ss_pred HHHHHHhcCCCCCCccHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q psy17871 67 DRICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQ 146 (189)
Q Consensus 67 ~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~ 146 (189)
...|..+|.+++|.|++.+|..++........ ...+..+|+.+|.+++|.|+.+++..++...... ....+.+..
T Consensus 14 ~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~-~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~-~~~~~~~~~--- 88 (149)
T PTZ00184 14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNPT-EAELQDMINEVDADGNGTIDFPEFLTLMARKMKD-TDSEEEIKE--- 88 (149)
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCC-HHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccC-CcHHHHHHH---
Confidence 45677889999999999999998876543333 4488999999999999999999999998775441 233333444
Q ss_pred HHHHHcCCCCCCcccHHHHHHHHHh
Q psy17871 147 NILDEADLDDDGALSFAEFELFIEK 171 (189)
Q Consensus 147 ~~~~~~d~~~dg~I~~~eF~~~~~~ 171 (189)
+|..+|.+++|.|+.++|..++..
T Consensus 89 -~F~~~D~~~~g~i~~~e~~~~l~~ 112 (149)
T PTZ00184 89 -AFKVFDRDGNGFISAAELRHVMTN 112 (149)
T ss_pred -HHHhhCCCCCCeEeHHHHHHHHHH
Confidence 499999999999999999998864
No 27
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.08 E-value=3.6e-09 Score=74.14 Aligned_cols=99 Identities=13% Similarity=0.280 Sum_probs=84.3
Q ss_pred HHHHHHhcCCCCCCccHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q psy17871 67 DRICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQ 146 (189)
Q Consensus 67 ~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~ 146 (189)
.+.|.++|.+++|.|++.++..++..+... .....+..+|..+|. ++|.|+..+|..+|...... .-+.+++...
T Consensus 23 keaF~l~D~d~~G~I~~~el~~ilr~lg~~-~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~-~~~~Eel~~a-- 97 (160)
T COG5126 23 KEAFQLFDRDSDGLIDRNELGKILRSLGFN-PSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKR-GDKEEELREA-- 97 (160)
T ss_pred HHHHHHhCcCCCCCCcHHHHHHHHHHcCCC-CcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhcc-CCcHHHHHHH--
Confidence 457888999999999999999999855443 444489999999999 99999999999999887653 5567777776
Q ss_pred HHHHHcCCCCCCcccHHHHHHHHHhC
Q psy17871 147 NILDEADLDDDGALSFAEFELFIEKS 172 (189)
Q Consensus 147 ~~~~~~d~~~dg~I~~~eF~~~~~~~ 172 (189)
|+.+|.+++|.|+..++..+++..
T Consensus 98 --F~~fD~d~dG~Is~~eL~~vl~~l 121 (160)
T COG5126 98 --FKLFDKDHDGYISIGELRRVLKSL 121 (160)
T ss_pred --HHHhCCCCCceecHHHHHHHHHhh
Confidence 899999999999999999999854
No 28
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.08 E-value=8.7e-10 Score=66.61 Aligned_cols=63 Identities=25% Similarity=0.427 Sum_probs=54.7
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhChh
Q psy17871 104 EHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQD 174 (189)
Q Consensus 104 ~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~~ 174 (189)
+.+|..+|++++|.|+.+|+..++... +++.+++..+ +..++.+++|.|+|++|+.++...+.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~----g~~~~~~~~i----~~~~d~~~~g~i~~~ef~~~~~~~~~ 64 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS----GLPRSVLAQI----WDLADTDKDGKLDKEEFAIAMHLIAL 64 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc----CCCHHHHHHH----HHHhcCCCCCcCCHHHHHHHHHHHHH
Confidence 468999999999999999999999875 4577777777 79999999999999999998876554
No 29
>KOG0044|consensus
Probab=99.06 E-value=2.1e-09 Score=77.85 Aligned_cols=91 Identities=20% Similarity=0.305 Sum_probs=79.7
Q ss_pred CCCCCccHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCC
Q psy17871 76 SHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLD 155 (189)
Q Consensus 76 ~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~ 155 (189)
...|.++.++|..++.......+...-+..+|+.||.|++|.|+..|+...|..... +..++-++.. |+.+|.|
T Consensus 39 cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~r--Gt~eekl~w~----F~lyD~d 112 (193)
T KOG0044|consen 39 CPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSR--GTLEEKLKWA----FRLYDLD 112 (193)
T ss_pred CCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcC--CcHHHHhhhh----heeecCC
Confidence 558999999999999998776666667899999999999999999999999988777 6777777766 9999999
Q ss_pred CCCcccHHHHHHHHHhC
Q psy17871 156 DDGALSFAEFELFIEKS 172 (189)
Q Consensus 156 ~dg~I~~~eF~~~~~~~ 172 (189)
++|.|+++|+++.+...
T Consensus 113 gdG~It~~Eml~iv~~i 129 (193)
T KOG0044|consen 113 GDGYITKEEMLKIVQAI 129 (193)
T ss_pred CCceEcHHHHHHHHHHH
Confidence 99999999999988753
No 30
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.06 E-value=7.7e-10 Score=64.10 Aligned_cols=52 Identities=27% Similarity=0.531 Sum_probs=47.8
Q ss_pred CCCcccHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHh
Q psy17871 114 GDDMLGMTDLKQIIDRLTGTHH-LSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEK 171 (189)
Q Consensus 114 ~~G~I~~~el~~~l~~~~~~~~-~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~ 171 (189)
++|.|+.++|+.+|..+|. . ++++++..+ +..+|.+++|.|+|+||+.++.+
T Consensus 1 ~~G~i~~~~~~~~l~~~g~--~~~s~~e~~~l----~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGI--KDLSEEEVDRL----FREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTS--SSSCHHHHHHH----HHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCC--CCCCHHHHHHH----HHhcccCCCCCCCHHHHHHHHHh
Confidence 4799999999999988888 7 999999888 89999999999999999998864
No 31
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.05 E-value=1.4e-09 Score=69.50 Aligned_cols=69 Identities=20% Similarity=0.430 Sum_probs=57.3
Q ss_pred hHHHHHHHHhcC--CCCCcccHHHHHHHHHH-HhCC--CCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCh
Q psy17871 101 VKAEHAFRIFDF--DGDDMLGMTDLKQIIDR-LTGT--HHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQ 173 (189)
Q Consensus 101 ~~l~~~F~~~D~--~~~G~I~~~el~~~l~~-~~~~--~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~ 173 (189)
..++.+|..||+ +++|.|+.+|+..+++. ++.. ...+.++++.+ +..++.+++|.|+|++|+.++....
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i----~~~~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKI----MKDLDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHH----HHHhccCCCCcCcHHHHHHHHHHHH
Confidence 368899999999 89999999999999986 4431 02357777777 7999999999999999999888653
No 32
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.04 E-value=2.2e-09 Score=68.64 Aligned_cols=69 Identities=22% Similarity=0.335 Sum_probs=56.6
Q ss_pred HHHHHHHH-hcCCCCC-cccHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhChh
Q psy17871 102 KAEHAFRI-FDFDGDD-MLGMTDLKQIIDRLTGT---HHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQD 174 (189)
Q Consensus 102 ~l~~~F~~-~D~~~~G-~I~~~el~~~l~~~~~~---~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~~ 174 (189)
.+..+|+. +|++|+| +|+.+||+.++...... ...++.+++.+ +..+|.|+||.|+|+||+.++.....
T Consensus 10 ~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~l----l~~~D~d~DG~I~f~EF~~l~~~l~~ 83 (89)
T cd05023 10 SLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRM----MKKLDLNSDGQLDFQEFLNLIGGLAV 83 (89)
T ss_pred HHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHH----HHHcCCCCCCcCcHHHHHHHHHHHHH
Confidence 67899999 7788876 99999999999886321 04566777777 79999999999999999998886543
No 33
>KOG4223|consensus
Probab=99.04 E-value=9.9e-10 Score=83.91 Aligned_cols=142 Identities=18% Similarity=0.261 Sum_probs=101.6
Q ss_pred CCHHHHH--HHHHHHhhCCCCCCCCCCCccchhhhhc-ccccccCChHHH---HHHHhcCCCCCCccHHHHHHHHhhcCC
Q psy17871 22 FTKKEIL--AHQKFKSLAPEKVGHNKNAKLPMTKILL-YPQLRVNPFGDR---ICHIFSSSHDGDCTFEDFLDMMSVFSE 95 (189)
Q Consensus 22 ~~~~e~~--~~~~F~~~d~~~~~~~~~g~i~~~e~~~-l~~~~~~~~~~~---l~~~~d~~~~g~i~~~ef~~~~~~~~~ 95 (189)
+++.+-+ +..++.++|.++ +|.|+..++.. +..........+ -+..++.+.+|.|+|+++.........
T Consensus 70 l~~ee~~~rl~~l~~~iD~~~-----Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~ 144 (325)
T KOG4223|consen 70 LTPEESQERLGKLVPKIDSDS-----DGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVD 144 (325)
T ss_pred hCcchhHHHHHHHHhhhcCCC-----CCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhccc
Confidence 4444444 888999999999 99999999988 443332332232 333467789999999999988775210
Q ss_pred --------CCChh-----hHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccH
Q psy17871 96 --------SAPKP-----VKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSF 162 (189)
Q Consensus 96 --------~~~~~-----~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~ 162 (189)
..... -.-+.-|+.-|.|++|.++++||..+|..-..+ .|.+- ++.+.+...|.|+||.|++
T Consensus 145 ~~~~~~d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p-~M~~i----Vi~Etl~d~Dkn~DG~I~~ 219 (325)
T KOG4223|consen 145 LPDEFPDEEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHP-HMKDI----VIAETLEDIDKNGDGKISL 219 (325)
T ss_pred CccccccchhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcc-hHHHH----HHHHHHhhcccCCCCceeH
Confidence 00000 123577999999999999999999999765543 44433 3444479999999999999
Q ss_pred HHHHHHHHhCh
Q psy17871 163 AEFELFIEKSQ 173 (189)
Q Consensus 163 ~eF~~~~~~~~ 173 (189)
+||+.-+..++
T Consensus 220 eEfigd~~~~~ 230 (325)
T KOG4223|consen 220 EEFIGDLYSHE 230 (325)
T ss_pred HHHHhHHhhcc
Confidence 99999777655
No 34
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.03 E-value=1.9e-09 Score=70.12 Aligned_cols=69 Identities=26% Similarity=0.327 Sum_probs=59.8
Q ss_pred hHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhChhHHh
Q psy17871 101 VKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQDFAK 177 (189)
Q Consensus 101 ~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~~~~~ 177 (189)
..+..+|..+|.+++|.|+.+|+..+++.. +++.+++..+ +..++.+++|.|+|++|+.++........
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~----~~~~~ev~~i----~~~~d~~~~g~I~~~eF~~~~~~~~~~~~ 78 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLKS----GLPQTLLAKI----WNLADIDNDGELDKDEFALAMHLIYRKLN 78 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHHc----CCCHHHHHHH----HHHhcCCCCCCcCHHHHHHHHHHHHHHHc
Confidence 478899999999999999999999999884 5778888777 78999999999999999998886655443
No 35
>KOG0040|consensus
Probab=99.01 E-value=1.2e-08 Score=90.76 Aligned_cols=144 Identities=19% Similarity=0.270 Sum_probs=117.6
Q ss_pred HHHHHHHhhcCCCHHHHH-HHHHHHhhCCCCCCCCCCCccchhhhhc-ccccccCC----------hHHHHHHHhcCCCC
Q psy17871 11 EELQDYEDLTYFTKKEIL-AHQKFKSLAPEKVGHNKNAKLPMTKILL-YPQLRVNP----------FGDRICHIFSSSHD 78 (189)
Q Consensus 11 ~~~~~~~~~~~~~~~e~~-~~~~F~~~d~~~~~~~~~g~i~~~e~~~-l~~~~~~~----------~~~~l~~~~d~~~~ 78 (189)
++..+-+..+..|+++++ +...|+.||.+. +|.++..+|.. |+.+|++. +.+++..++|++.+
T Consensus 2236 EQqIqarn~~GVtEe~L~EFs~~fkhFDkek-----~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~ 2310 (2399)
T KOG0040|consen 2236 EQQIQARNHNGVTEEQLKEFSMMFKHFDKEK-----NGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRD 2310 (2399)
T ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHhchhh-----ccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCc
Confidence 334444556789999999 999999999999 99999999999 99888764 45678888999999
Q ss_pred CCccHHHHHHHHhhcCC-CCChhhHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCC--
Q psy17871 79 GDCTFEDFLDMMSVFSE-SAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLD-- 155 (189)
Q Consensus 79 g~i~~~ef~~~~~~~~~-~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~-- 155 (189)
|.|+..+|+.++..... .......|..||+.+|. +.-+|+.+++.+ .+|.++++-++..|-..+++.
T Consensus 2311 G~Vsl~dY~afmi~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~---------~ltreqaefc~s~m~~~~e~~~~ 2380 (2399)
T KOG0040|consen 2311 GYVSLQDYMAFMISKETENILSSEEIEDAFRALDA-GKPYVTKEELYQ---------NLTREQAEFCMSKMKPYAETSSG 2380 (2399)
T ss_pred CcccHHHHHHHHHhcccccccchHHHHHHHHHhhc-CCccccHHHHHh---------cCCHHHHHHHHHHhhhhcccccC
Confidence 99999999999987533 22333489999999999 889999998753 578888888887777777774
Q ss_pred --CCCcccHHHHHHHH
Q psy17871 156 --DDGALSFAEFELFI 169 (189)
Q Consensus 156 --~dg~I~~~eF~~~~ 169 (189)
-.+.++|.+|.+-+
T Consensus 2381 ~s~q~~l~y~dfv~sl 2396 (2399)
T KOG0040|consen 2381 RSDQVALDYKDFVNSL 2396 (2399)
T ss_pred CCccccccHHHHHHHH
Confidence 34679999998855
No 36
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.98 E-value=3.4e-09 Score=62.37 Aligned_cols=61 Identities=36% Similarity=0.659 Sum_probs=55.4
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHH
Q psy17871 103 AEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFI 169 (189)
Q Consensus 103 l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~ 169 (189)
+..+|..+|.+++|.|+.+|+..++..++. +.+.+.+..+ +...+.+++|.|++++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~--~~~~~~~~~~----~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGE--GLSEEEIDEM----IREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCC--CCCHHHHHHH----HHHhCCCCCCeEeHHHHHHHh
Confidence 567899999999999999999999999988 7888888877 799999999999999998875
No 37
>KOG0037|consensus
Probab=98.97 E-value=1.6e-08 Score=73.42 Aligned_cols=141 Identities=11% Similarity=0.179 Sum_probs=107.5
Q ss_pred CCCHHHHHHHHhh---cCCCHHHHHHHHHHHhhCCCCCCCCCCCccchhhhhc-ccccccCChHHHHHHHhcCCCCCCcc
Q psy17871 7 QFTEEELQDYEDL---TYFTKKEILAHQKFKSLAPEKVGHNKNAKLPMTKILL-YPQLRVNPFGDRICHIFSSSHDGDCT 82 (189)
Q Consensus 7 ~l~~~~~~~~~~~---~~~~~~e~~~~~~F~~~d~~~~~~~~~g~i~~~e~~~-l~~~~~~~~~~~l~~~~d~~~~g~i~ 82 (189)
.++.+++...... +.|+.+-+ +-+...+|.++ +|+|...||.. +..+. .-..+|.-+|+|++|.|+
T Consensus 73 ~i~~~eLq~aLsn~~~~~Fs~~Tc--rlmI~mfd~~~-----~G~i~f~EF~~Lw~~i~---~Wr~vF~~~D~D~SG~I~ 142 (221)
T KOG0037|consen 73 RILAKELQQALSNGTWSPFSIETC--RLMISMFDRDN-----SGTIGFKEFKALWKYIN---QWRNVFRTYDRDRSGTID 142 (221)
T ss_pred cccHHHHHHHhhcCCCCCCCHHHH--HHHHHHhcCCC-----CCccCHHHHHHHHHHHH---HHHHHHHhcccCCCCccc
Confidence 5677766666542 34555555 44456779999 99999999998 43221 246789999999999999
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCC--cc
Q psy17871 83 FEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDG--AL 160 (189)
Q Consensus 83 ~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg--~I 160 (189)
..|+...+..+--..... -+..+++.||+.++|.|..+++.+.+..+.. +++ +|+..|.+.+| +|
T Consensus 143 ~sEL~~Al~~~Gy~Lspq-~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~---lt~---------~Fr~~D~~q~G~i~~ 209 (221)
T KOG0037|consen 143 SSELRQALTQLGYRLSPQ-FYNLLVRKYDRFGGGRIDFDDFIQCCVVLQR---LTE---------AFRRRDTAQQGSITI 209 (221)
T ss_pred HHHHHHHHHHcCcCCCHH-HHHHHHHHhccccCCceeHHHHHHHHHHHHH---HHH---------HHHHhccccceeEEE
Confidence 999999998865544444 7889999999998999999999999877644 332 27888888877 66
Q ss_pred cHHHHHHHHH
Q psy17871 161 SFAEFELFIE 170 (189)
Q Consensus 161 ~~~eF~~~~~ 170 (189)
+|++|+.+..
T Consensus 210 ~y~dfl~~t~ 219 (221)
T KOG0037|consen 210 SYDDFLQMTM 219 (221)
T ss_pred eHHHHHHHhh
Confidence 8999998754
No 38
>KOG4666|consensus
Probab=98.93 E-value=1.1e-08 Score=78.25 Aligned_cols=123 Identities=16% Similarity=0.290 Sum_probs=100.9
Q ss_pred CCccchhhhhc-ccccccCChHHHHHHHhcCCCCCCccHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCCCcccHHHHH
Q psy17871 46 NAKLPMTKILL-YPQLRVNPFGDRICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLK 124 (189)
Q Consensus 46 ~g~i~~~e~~~-l~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~el~ 124 (189)
.+.|...+|.. ++ +........+|.+||.+++|.++|.+.+..++.++........++.+|+.|+.+.||.+...+|.
T Consensus 241 g~~igi~efa~~l~-vpvsd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls 319 (412)
T KOG4666|consen 241 GPDIGIVEFAVNLR-VPVSDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILS 319 (412)
T ss_pred CCCcceeEeeeeee-cchhhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHH
Confidence 66788888877 43 22234456789999999999999999999999999888777799999999999999999999998
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhChhHH
Q psy17871 125 QIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQDFA 176 (189)
Q Consensus 125 ~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~~~~ 176 (189)
-+|+...+ +.+-.+-.+ |...+...+|+|+|++|.+++..+|.+.
T Consensus 320 ~ilq~~lg---v~~l~v~~l----f~~i~q~d~~ki~~~~f~~fa~~~p~~a 364 (412)
T KOG4666|consen 320 LILQVVLG---VEVLRVPVL----FPSIEQKDDPKIYASNFRKFAATEPNLA 364 (412)
T ss_pred HHHHHhcC---cceeecccc----chhhhcccCcceeHHHHHHHHHhCchhh
Confidence 88887654 333233334 7888888899999999999999999875
No 39
>PLN02964 phosphatidylserine decarboxylase
Probab=98.89 E-value=1.9e-08 Score=84.91 Aligned_cols=97 Identities=20% Similarity=0.369 Sum_probs=75.9
Q ss_pred HHHHHhcCCCCCCccHHHHHHHHhhcCCCCChh--hHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHH
Q psy17871 68 RICHIFSSSHDGDCTFEDFLDMMSVFSESAPKP--VKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLI 145 (189)
Q Consensus 68 ~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~--~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i 145 (189)
+.|..+|.+++|.+ +...+..+.. ...... ..+..+|..+|.+++|.|+.+||..++..++. ..+++++..+
T Consensus 147 eaF~lfD~dgdG~i-Lg~ilrslG~--~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~--~~seEEL~ea- 220 (644)
T PLN02964 147 ESFDLLDPSSSNKV-VGSIFVSCSI--EDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGN--LVAANKKEEL- 220 (644)
T ss_pred HHHHHHCCCCCCcC-HHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhcc--CCCHHHHHHH-
Confidence 45778899999986 3433333321 111222 13789999999999999999999999998876 7888888887
Q ss_pred HHHHHHcCCCCCCcccHHHHHHHHHhCh
Q psy17871 146 QNILDEADLDDDGALSFAEFELFIEKSQ 173 (189)
Q Consensus 146 ~~~~~~~d~~~dg~I~~~eF~~~~~~~~ 173 (189)
|+.+|.|++|.|+++||..++...+
T Consensus 221 ---Fk~fDkDgdG~Is~dEL~~vL~~~~ 245 (644)
T PLN02964 221 ---FKAADLNGDGVVTIDELAALLALQQ 245 (644)
T ss_pred ---HHHhCCCCCCcCCHHHHHHHHHhcc
Confidence 8999999999999999999998753
No 40
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.88 E-value=1e-08 Score=68.58 Aligned_cols=61 Identities=26% Similarity=0.371 Sum_probs=50.3
Q ss_pred hHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHh
Q psy17871 101 VKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEK 171 (189)
Q Consensus 101 ~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~ 171 (189)
..+.-+|..+|.|++|.|+.+||..+. + ..... ++..++..+|.|+||.||++||..++.+
T Consensus 48 ~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l----~~~e~----~~~~f~~~~D~n~Dg~IS~~Ef~~cl~~ 108 (116)
T cd00252 48 DPVGWMFNQLDGNYDGKLSHHELAPIR--L----DPNEH----CIKPFFESCDLDKDGSISLDEWCYCFIK 108 (116)
T ss_pred HHHHHHHHHHCCCCCCcCCHHHHHHHH--c----cchHH----HHHHHHHHHCCCCCCCCCHHHHHHHHhC
Confidence 478899999999999999999999876 2 22333 3444589999999999999999999954
No 41
>KOG0028|consensus
Probab=98.87 E-value=6.2e-08 Score=67.00 Aligned_cols=101 Identities=14% Similarity=0.228 Sum_probs=82.6
Q ss_pred HHHHHHhcCCCCCCccHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCCCcccHHHHHHHHHH-HhCCCCCCHHHHHHHH
Q psy17871 67 DRICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDR-LTGTHHLSDNDIQHLI 145 (189)
Q Consensus 67 ~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~-~~~~~~~~~~e~~~~i 145 (189)
.+.|.+++.+++|.|+++++-..+..+.-....+ ++..+..-+|++++|.|+.++|+.++.. ++. .-+.+++...
T Consensus 36 ~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~-ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e--~dt~eEi~~a- 111 (172)
T KOG0028|consen 36 KEAFELFDPDMAGKIDVEELKVAMRALGFEPKKE-EILKLLADVDKEGSGKITFEDFRRVMTVKLGE--RDTKEEIKKA- 111 (172)
T ss_pred HHHHHhhccCCCCcccHHHHHHHHHHcCCCcchH-HHHHHHHhhhhccCceechHHHHHHHHHHHhc--cCcHHHHHHH-
Confidence 4568888999999999999955555544333344 7888999999999999999999999865 455 5688888777
Q ss_pred HHHHHHcCCCCCCcccHHHHHHHHHhChh
Q psy17871 146 QNILDEADLDDDGALSFAEFELFIEKSQD 174 (189)
Q Consensus 146 ~~~~~~~d~~~dg~I~~~eF~~~~~~~~~ 174 (189)
|+..|.+++|+|++.+|..++.....
T Consensus 112 ---frl~D~D~~Gkis~~~lkrvakeLge 137 (172)
T KOG0028|consen 112 ---FRLFDDDKTGKISQRNLKRVAKELGE 137 (172)
T ss_pred ---HHcccccCCCCcCHHHHHHHHHHhCc
Confidence 89999999999999999998886543
No 42
>PF14658 EF-hand_9: EF-hand domain
Probab=98.85 E-value=1.7e-08 Score=59.93 Aligned_cols=62 Identities=24% Similarity=0.475 Sum_probs=55.3
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCC-CcccHHHHHHHHHh
Q psy17871 105 HAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDD-GALSFAEFELFIEK 171 (189)
Q Consensus 105 ~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~d-g~I~~~eF~~~~~~ 171 (189)
.+|..+|+++.|.|....+..+|+.++.. ..++.+++.+ .+++|+++. |.|+++.|+..|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~-~p~e~~Lq~l----~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGR-SPEESELQDL----INELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCC-CCcHHHHHHH----HHHhCCCCCCceEeHHHHHHHHHH
Confidence 47999999999999999999999999885 5667788888 699999987 99999999998874
No 43
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.83 E-value=2.3e-08 Score=63.88 Aligned_cols=67 Identities=25% Similarity=0.484 Sum_probs=56.0
Q ss_pred HHHHHHHHhcCC--CCCcccHHHHHHHHHH-HhCCCCCC----HHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhChh
Q psy17871 102 KAEHAFRIFDFD--GDDMLGMTDLKQIIDR-LTGTHHLS----DNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQD 174 (189)
Q Consensus 102 ~l~~~F~~~D~~--~~G~I~~~el~~~l~~-~~~~~~~~----~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~~ 174 (189)
.+...|+.|+.. ++|.|+.+||+.++.. ++. .++ +++++.+ +...|.+++|.|+|++|+.++.....
T Consensus 9 ~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~--~~t~~~~~~~v~~i----~~~~D~d~dG~I~f~eF~~~~~~~~~ 82 (88)
T cd05030 9 TIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPN--FLKKEKNQKAIDKI----FEDLDTNQDGQLSFEEFLVLVIKVGV 82 (88)
T ss_pred HHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhH--hhccCCCHHHHHHH----HHHcCCCCCCcCcHHHHHHHHHHHHH
Confidence 677899999976 4899999999999974 444 565 7777777 79999999999999999999886543
No 44
>KOG0034|consensus
Probab=98.83 E-value=5.9e-08 Score=70.21 Aligned_cols=115 Identities=12% Similarity=0.229 Sum_probs=83.4
Q ss_pred CCCHHHHHHHHhhcCCCHHHHHHHHHHHhhCCCCCCCCCCCc-cchhhhhc-ccccccCC----hHHHHHHHhcCCCCCC
Q psy17871 7 QFTEEELQDYEDLTYFTKKEILAHQKFKSLAPEKVGHNKNAK-LPMTKILL-YPQLRVNP----FGDRICHIFSSSHDGD 80 (189)
Q Consensus 7 ~l~~~~~~~~~~~~~~~~~e~~~~~~F~~~d~~~~~~~~~g~-i~~~e~~~-l~~~~~~~----~~~~l~~~~d~~~~g~ 80 (189)
.++.+++..+... ..++- ..+++..+++++ +|. |++++|.+ +....... ..+-.|+++|.+++|.
T Consensus 50 ~lt~eef~~i~~~-~~Np~---~~rI~~~f~~~~-----~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~ 120 (187)
T KOG0034|consen 50 YLTKEEFLSIPEL-ALNPL---ADRIIDRFDTDG-----NGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGF 120 (187)
T ss_pred ccCHHHHHHHHHH-hcCcH---HHHHHHHHhccC-----CCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCc
Confidence 4666666655521 01100 456788888888 777 99999999 65544332 2345789999999999
Q ss_pred ccHHHHHHHHhhcCCCCCh---h---hHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q psy17871 81 CTFEDFLDMMSVFSESAPK---P---VKAEHAFRIFDFDGDDMLGMTDLKQIIDRL 130 (189)
Q Consensus 81 i~~~ef~~~~~~~~~~~~~---~---~~l~~~F~~~D~~~~G~I~~~el~~~l~~~ 130 (189)
|+.+++..++..+...... + +-+...|..+|.+++|.|+.+|+..++...
T Consensus 121 I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 121 ISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred CcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 9999999999876543222 1 346788999999999999999999988653
No 45
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.80 E-value=1.3e-08 Score=61.35 Aligned_cols=61 Identities=18% Similarity=0.335 Sum_probs=37.1
Q ss_pred HHHHHHhcCCCCCCccHHHHHHHHhhcCCCC---ChhhHHHHHHHHhcCCCCCcccHHHHHHHH
Q psy17871 67 DRICHIFSSSHDGDCTFEDFLDMMSVFSESA---PKPVKAEHAFRIFDFDGDDMLGMTDLKQII 127 (189)
Q Consensus 67 ~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~---~~~~~l~~~F~~~D~~~~G~I~~~el~~~l 127 (189)
.++|..+|.+++|.|+.+||..++....... .....+..+|+.+|++++|.|+.+|+..++
T Consensus 3 ~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 3 KEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 3455566666666666666666655543211 112245666888888888888888877653
No 46
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.64 E-value=7.3e-08 Score=61.50 Aligned_cols=62 Identities=15% Similarity=0.177 Sum_probs=48.6
Q ss_pred HH-HHHHHHhhCC-CCCCCCCCCccchhhhhc-ccc-cccCCh----HHHHHHHhcCCCCCCccHHHHHHHHhhc
Q psy17871 27 IL-AHQKFKSLAP-EKVGHNKNAKLPMTKILL-YPQ-LRVNPF----GDRICHIFSSSHDGDCTFEDFLDMMSVF 93 (189)
Q Consensus 27 ~~-~~~~F~~~d~-~~~~~~~~g~i~~~e~~~-l~~-~~~~~~----~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 93 (189)
+. +..+|..+|+ ++ +|+|+..+|+. +.. ++...+ ...+++.+|.|++|.|+|.||+.++..+
T Consensus 7 i~~l~~~F~~fd~~~~-----~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 7 IETLVSNFHKASVKGG-----KESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHhCCCC-----CCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 44 8889999999 88 99999999999 776 664433 3456666788899999999998888654
No 47
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.62 E-value=1.3e-07 Score=61.47 Aligned_cols=67 Identities=13% Similarity=0.191 Sum_probs=50.2
Q ss_pred CCCHHHHH-HHHHHHhhCCCCCCCCCCCccchhhhhc-ccccccCC-hHHHHHHHhcCCCCCCccHHHHHHHHhh
Q psy17871 21 YFTKKEIL-AHQKFKSLAPEKVGHNKNAKLPMTKILL-YPQLRVNP-FGDRICHIFSSSHDGDCTFEDFLDMMSV 92 (189)
Q Consensus 21 ~~~~~e~~-~~~~F~~~d~~~~~~~~~g~i~~~e~~~-l~~~~~~~-~~~~l~~~~d~~~~g~i~~~ef~~~~~~ 92 (189)
.++.+++. +..+|..+|.++ +|.|+.+++.. ++..+... ....++..++.+++|.|+|++|+.++..
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~-----~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 3 AISPEDKAKYEQIFRSLDKNQ-----DGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred CCCHHHHHHHHHHHHHhCCCC-----CCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 36777777 888899999998 99999999988 76655321 2345666677777888888888877755
No 48
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.59 E-value=8.2e-08 Score=47.93 Aligned_cols=29 Identities=34% Similarity=0.716 Sum_probs=25.7
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q psy17871 102 KAEHAFRIFDFDGDDMLGMTDLKQIIDRL 130 (189)
Q Consensus 102 ~l~~~F~~~D~~~~G~I~~~el~~~l~~~ 130 (189)
+++.+|+.+|+|++|+|+.+||..++..+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 36789999999999999999999998753
No 49
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.53 E-value=3.3e-07 Score=58.43 Aligned_cols=60 Identities=18% Similarity=0.394 Sum_probs=47.4
Q ss_pred HHHHHHhhC-CCCCCCCCCC-ccchhhhhc-ccc-----cccCChHH---HHHHHhcCCCCCCccHHHHHHHHhhc
Q psy17871 29 AHQKFKSLA-PEKVGHNKNA-KLPMTKILL-YPQ-----LRVNPFGD---RICHIFSSSHDGDCTFEDFLDMMSVF 93 (189)
Q Consensus 29 ~~~~F~~~d-~~~~~~~~~g-~i~~~e~~~-l~~-----~~~~~~~~---~l~~~~d~~~~g~i~~~ef~~~~~~~ 93 (189)
+..+|..+| +++ +| .|+..+++. +.. ++..++.. ++++.+|.+++|.|+|.+|+.++...
T Consensus 10 l~~aF~~fD~~dg-----dG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 10 LIDVFHQYSGREG-----DKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHhcccCC-----CcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 788899998 788 99 599999999 877 77666644 45555677889999999998887653
No 50
>KOG0041|consensus
Probab=98.49 E-value=5.5e-07 Score=64.64 Aligned_cols=64 Identities=33% Similarity=0.596 Sum_probs=57.2
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHh
Q psy17871 102 KAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEK 171 (189)
Q Consensus 102 ~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~ 171 (189)
.+..+|+.||.+.||+|+..||+.++.++|. +-|---+++| +..+|.|+||+|+|.+|.-....
T Consensus 100 ~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLga--pQTHL~lK~m----ikeVded~dgklSfreflLIfrk 163 (244)
T KOG0041|consen 100 DAESMFKQYDEDRDGFIDLMELKRMMEKLGA--PQTHLGLKNM----IKEVDEDFDGKLSFREFLLIFRK 163 (244)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHhCC--chhhHHHHHH----HHHhhcccccchhHHHHHHHHHH
Confidence 5678999999999999999999999999998 6777777787 69999999999999999987664
No 51
>KOG2643|consensus
Probab=98.48 E-value=1.5e-06 Score=69.19 Aligned_cols=136 Identities=15% Similarity=0.247 Sum_probs=94.8
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCCCCCccchhhhhc-cc------cccc----CC----------hHHHHHHHhcCCCCCC
Q psy17871 22 FTKKEILAHQKFKSLAPEKVGHNKNAKLPMTKILL-YP------QLRV----NP----------FGDRICHIFSSSHDGD 80 (189)
Q Consensus 22 ~~~~e~~~~~~F~~~d~~~~~~~~~g~i~~~e~~~-l~------~~~~----~~----------~~~~l~~~~d~~~~g~ 80 (189)
+|..+..+.-+|+++|.|+ +|-|+.+||.. .. ..+. .+ ...-+--.|..++++.
T Consensus 228 LS~p~~~F~IAFKMFD~dg-----nG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~k 302 (489)
T KOG2643|consen 228 LSIPERNFRIAFKMFDLDG-----NGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGK 302 (489)
T ss_pred HccCcccceeeeeeeecCC-----CCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCcc
Confidence 3333333556799999999 99999999987 21 1111 00 0112334578899999
Q ss_pred ccHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcc
Q psy17871 81 CTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGAL 160 (189)
Q Consensus 81 i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I 160 (189)
+++++|+.++..+. .+-++.-|..+|+..+|.|+..+|..+|-.... .+.+.-..+.+..-+..... +..|
T Consensus 303 Ls~deF~~F~e~Lq-----~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~---~n~~~k~~~lkrvk~kf~~~-~~gI 373 (489)
T KOG2643|consen 303 LSIDEFLKFQENLQ-----EEILELEFERFDKGDSGAISEVDFAELLLAYAG---VNSKKKHKYLKRVKEKFKDD-GKGI 373 (489)
T ss_pred ccHHHHHHHHHHHH-----HHHHHHHHHHhCcccccccCHHHHHHHHHHHcc---cchHhHHHHHHHHHHhccCC-CCCc
Confidence 99999999998763 346788899999999999999999999977654 33333333444445666554 4459
Q ss_pred cHHHHHHHHHh
Q psy17871 161 SFAEFELFIEK 171 (189)
Q Consensus 161 ~~~eF~~~~~~ 171 (189)
+++||..+..-
T Consensus 374 Sl~Ef~~Ff~F 384 (489)
T KOG2643|consen 374 SLQEFKAFFRF 384 (489)
T ss_pred CHHHHHHHHHH
Confidence 99999887663
No 52
>KOG0031|consensus
Probab=98.48 E-value=1.5e-06 Score=59.81 Aligned_cols=69 Identities=19% Similarity=0.347 Sum_probs=48.8
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHH-----------------------------HHHHHHHHc
Q psy17871 102 KAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQH-----------------------------LIQNILDEA 152 (189)
Q Consensus 102 ~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~-----------------------------~i~~~~~~~ 152 (189)
+++.||.++|.|++|.|.+++|+.++..+|. ..++++++. .|-.+|..+
T Consensus 33 EfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk--~~~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~~I~~AF~~F 110 (171)
T KOG0031|consen 33 EFKEAFNLMDQNRDGFIDKEDLRDMLASLGK--IASDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEEVILNAFKTF 110 (171)
T ss_pred HHHHHHHHHhccCCCcccHHHHHHHHHHcCC--CCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhc
Confidence 5667777777777777777777777777766 555555544 344457778
Q ss_pred CCCCCCcccHHHHHHHHHhC
Q psy17871 153 DLDDDGALSFAEFELFIEKS 172 (189)
Q Consensus 153 d~~~dg~I~~~eF~~~~~~~ 172 (189)
|.++.|+|.-+.+..+++..
T Consensus 111 D~~~~G~I~~d~lre~Ltt~ 130 (171)
T KOG0031|consen 111 DDEGSGKIDEDYLRELLTTM 130 (171)
T ss_pred CccCCCccCHHHHHHHHHHh
Confidence 88888888888888877753
No 53
>KOG0036|consensus
Probab=98.44 E-value=2.3e-06 Score=67.76 Aligned_cols=129 Identities=14% Similarity=0.204 Sum_probs=98.1
Q ss_pred HHHHHHhhCCCCCCCCCCCccchhhhhc-ccccccCChHHHHHHHhcCCCCCCccHHHHHHHHhhcCCCCChhhHHHHHH
Q psy17871 29 AHQKFKSLAPEKVGHNKNAKLPMTKILL-YPQLRVNPFGDRICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAF 107 (189)
Q Consensus 29 ~~~~F~~~d~~~~~~~~~g~i~~~e~~~-l~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F 107 (189)
...+|...|.+. +|.+++++|.+ +..- .....++|+.+|.++||.|+..|.-..+......-..+ ++..+|
T Consensus 53 ~~~l~~~~d~~~-----dg~vDy~eF~~Y~~~~--E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de-~~~k~~ 124 (463)
T KOG0036|consen 53 AKMLFSAMDANR-----DGRVDYSEFKRYLDNK--ELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDE-KAAKFF 124 (463)
T ss_pred HHHHHHhcccCc-----CCcccHHHHHHHHHHh--HHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHH-HHHHHH
Confidence 678899999999 99999999999 6633 33346788889999999999999999988776655555 888899
Q ss_pred HHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--HcCCCCCCcccHHHHHHHHHhC
Q psy17871 108 RIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILD--EADLDDDGALSFAEFELFIEKS 172 (189)
Q Consensus 108 ~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~--~~d~~~dg~I~~~eF~~~~~~~ 172 (189)
+..|+++++.|+.+|.++.+.. .+...++.+++.+-. -+|.+.+..|+ ++|.......
T Consensus 125 e~~d~~g~~~I~~~e~rd~~ll------~p~s~i~di~~~W~h~~~idigE~~~iP-dg~s~~e~~~ 184 (463)
T KOG0036|consen 125 EHMDKDGKATIDLEEWRDHLLL------YPESDLEDIYDFWRHVLLIDIGEDAVLP-DGDSKLENDS 184 (463)
T ss_pred HHhccCCCeeeccHHHHhhhhc------CChhHHHHHHHhhhhheEEEccccccCC-cchHHHHhcc
Confidence 9999999999999999988743 223444444322222 24677788888 7777766544
No 54
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.43 E-value=3.7e-07 Score=46.41 Aligned_cols=30 Identities=33% Similarity=0.731 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHH-HHh
Q psy17871 102 KAEHAFRIFDFDGDDMLGMTDLKQIID-RLT 131 (189)
Q Consensus 102 ~l~~~F~~~D~~~~G~I~~~el~~~l~-~~~ 131 (189)
+++.+|+.+|.|++|+|+.+||.++|+ .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 367899999999999999999999998 454
No 55
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.42 E-value=3.8e-06 Score=53.43 Aligned_cols=71 Identities=17% Similarity=0.270 Sum_probs=54.3
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhChhHHh
Q psy17871 102 KAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGT---HHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQDFAK 177 (189)
Q Consensus 102 ~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~---~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~~~~~ 177 (189)
.+..+|..|. .+.|.+++.||+.++..-... ..-++..++.+ |..+|.|+||.|+|.||..++.......+
T Consensus 9 ~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~i----m~~LD~n~Dg~vdF~EF~~Lv~~l~~ac~ 82 (91)
T cd05024 9 KMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKI----MKDLDDCRDGKVGFQSFFSLIAGLLIACN 82 (91)
T ss_pred HHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHH----HHHhCCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 5678899997 446799999999999763221 03455555655 89999999999999999999887655443
No 56
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.37 E-value=2e-06 Score=49.50 Aligned_cols=52 Identities=27% Similarity=0.477 Sum_probs=38.3
Q ss_pred CCCccHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q psy17871 78 DGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDR 129 (189)
Q Consensus 78 ~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~ 129 (189)
+|.|+.++|..++..+......+..+..+|..+|.+++|.|+.+||..++..
T Consensus 2 ~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred cCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 5788888888888544333133346888888888888888888888887753
No 57
>KOG2643|consensus
Probab=98.36 E-value=5.4e-06 Score=66.13 Aligned_cols=146 Identities=14% Similarity=0.269 Sum_probs=100.6
Q ss_pred CCCCCHHHHHHHHhhcCCCHHHHH-HHHHHHhhCCCCCCCCCCCccchhhhhc-c-cccccCCh-----HHHHHHHhcCC
Q psy17871 5 ESQFTEEELQDYEDLTYFTKKEIL-AHQKFKSLAPEKVGHNKNAKLPMTKILL-Y-PQLRVNPF-----GDRICHIFSSS 76 (189)
Q Consensus 5 ~s~l~~~~~~~~~~~~~~~~~e~~-~~~~F~~~d~~~~~~~~~g~i~~~e~~~-l-~~~~~~~~-----~~~l~~~~d~~ 76 (189)
+.+|+-++..++.+ .-+.+ +.-.|..+++.. +|.|+..+|.. + ..-+.+.. ..++.+.++..
T Consensus 300 ~~kLs~deF~~F~e-----~Lq~Eil~lEF~~~~~~~-----~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~ 369 (489)
T KOG2643|consen 300 NGKLSIDEFLKFQE-----NLQEEILELEFERFDKGD-----SGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD 369 (489)
T ss_pred CccccHHHHHHHHH-----HHHHHHHHHHHHHhCccc-----ccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC
Confidence 34577666666655 12333 677799999988 89999999999 3 33333322 23445555554
Q ss_pred CCCCccHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCC
Q psy17871 77 HDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDD 156 (189)
Q Consensus 77 ~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~ 156 (189)
+..|++.||..+..-+.... .+..|...|- .-.+.|+..+++++.....+. .+++..++-+ |.-.|.|+
T Consensus 370 -~~gISl~Ef~~Ff~Fl~~l~----dfd~Al~fy~-~Ag~~i~~~~f~raa~~vtGv-eLSdhVvdvv----F~IFD~N~ 438 (489)
T KOG2643|consen 370 -GKGISLQEFKAFFRFLNNLN----DFDIALRFYH-MAGASIDEKTFQRAAKVVTGV-ELSDHVVDVV----FTIFDENN 438 (489)
T ss_pred -CCCcCHHHHHHHHHHHhhhh----HHHHHHHHHH-HcCCCCCHHHHHHHHHHhcCc-ccccceeeeE----EEEEccCC
Confidence 45699999998876654332 3334444443 235679999999999876554 7887644333 89999999
Q ss_pred CCcccHHHHHHHHHh
Q psy17871 157 DGALSFAEFELFIEK 171 (189)
Q Consensus 157 dg~I~~~eF~~~~~~ 171 (189)
||.++++||+.++++
T Consensus 439 Dg~LS~~EFl~Vmk~ 453 (489)
T KOG2643|consen 439 DGTLSHKEFLAVMKR 453 (489)
T ss_pred CCcccHHHHHHHHHH
Confidence 999999999999874
No 58
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.36 E-value=1.2e-06 Score=55.92 Aligned_cols=63 Identities=19% Similarity=0.239 Sum_probs=42.0
Q ss_pred HHHH-HHHHHHhhCC--CCCCCCCCCccchhhhhc-ccc-cccCC----hH---HHHHHHhcCCCCCCccHHHHHHHHhh
Q psy17871 25 KEIL-AHQKFKSLAP--EKVGHNKNAKLPMTKILL-YPQ-LRVNP----FG---DRICHIFSSSHDGDCTFEDFLDMMSV 92 (189)
Q Consensus 25 ~e~~-~~~~F~~~d~--~~~~~~~~g~i~~~e~~~-l~~-~~~~~----~~---~~l~~~~d~~~~g~i~~~ef~~~~~~ 92 (189)
++++ ++.+|..+|+ ++ +|.|+..++.. +.. ++..+ +. ..++..++.+++|.|+|.+|+.++..
T Consensus 5 ~~~~~l~~~F~~~D~~~~~-----~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGD-----KDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHHHHhhccCC-----CCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 4555 7788888888 67 88888888888 543 33222 22 34555566677778888888777654
No 59
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.35 E-value=3.6e-06 Score=49.05 Aligned_cols=60 Identities=15% Similarity=0.371 Sum_probs=45.5
Q ss_pred HHHHHHhcCCCCCCccHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCCCcccHHHHHHHH
Q psy17871 67 DRICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQII 127 (189)
Q Consensus 67 ~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l 127 (189)
..++..++.+++|.|++.+|..++.......... .+..+|..+|.+++|.|+.+++..++
T Consensus 3 ~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 3 REAFRLFDKDGDGTISADELKAALKSLGEGLSEE-EIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHH-HHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 3567777888888888888888887665444443 67788888888888888888887654
No 60
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.35 E-value=1.7e-06 Score=55.83 Aligned_cols=60 Identities=18% Similarity=0.311 Sum_probs=39.7
Q ss_pred HHHHHHhhC-CCCCCCCCCC-ccchhhhhc-ccc-c----ccCCh---HHHHHHHhcCCCCCCccHHHHHHHHhhc
Q psy17871 29 AHQKFKSLA-PEKVGHNKNA-KLPMTKILL-YPQ-L----RVNPF---GDRICHIFSSSHDGDCTFEDFLDMMSVF 93 (189)
Q Consensus 29 ~~~~F~~~d-~~~~~~~~~g-~i~~~e~~~-l~~-~----~~~~~---~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 93 (189)
+.++|..+| .++ +| .|+.++|.. +.. + ..... ...+++-+|.+++|.|+|.||+.++..+
T Consensus 12 ~~~~F~~~dd~dg-----dg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 12 LIRIFHNYSGKEG-----DRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHccCC-----CCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 677788888 567 77 488888888 643 2 11222 3455666677777788888887777654
No 61
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.25 E-value=9.1e-06 Score=48.70 Aligned_cols=58 Identities=12% Similarity=0.114 Sum_probs=28.3
Q ss_pred HHHHhcCCCCCCccHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q psy17871 69 ICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDR 129 (189)
Q Consensus 69 l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~ 129 (189)
+|..+|.+++|.|+..++..++.... . ....+..+|+.+|.+++|.|+.+|+..++..
T Consensus 4 ~F~~~D~~~~G~i~~~el~~~l~~~g--~-~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 4 IFRSLDPDGDGLISGDEARPFLGKSG--L-PRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred HHHHhCCCCCCcCcHHHHHHHHHHcC--C-CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 44445555555555555555443321 1 1224455555555555555555555555443
No 62
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.25 E-value=3.7e-06 Score=54.11 Aligned_cols=60 Identities=18% Similarity=0.322 Sum_probs=40.8
Q ss_pred HHHHHHhhC-CCCCCCCCCC-ccchhhhhc-ccc-ccc----CChH---HHHHHHhcCCCCCCccHHHHHHHHhhc
Q psy17871 29 AHQKFKSLA-PEKVGHNKNA-KLPMTKILL-YPQ-LRV----NPFG---DRICHIFSSSHDGDCTFEDFLDMMSVF 93 (189)
Q Consensus 29 ~~~~F~~~d-~~~~~~~~~g-~i~~~e~~~-l~~-~~~----~~~~---~~l~~~~d~~~~g~i~~~ef~~~~~~~ 93 (189)
+.++|..+| .++ +| .|+..++.. +.. ++. .++. ..++..+|.+++|.|+|.+|+.++..+
T Consensus 11 l~~~F~~fDd~dg-----~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 11 LINVFHAHSGKEG-----DKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHhcccC-----CCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 777888886 888 88 488888888 654 332 2333 345555677777778888877776543
No 63
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.20 E-value=8.7e-06 Score=54.53 Aligned_cols=57 Identities=12% Similarity=0.219 Sum_probs=44.1
Q ss_pred HHHHHHHhcCCCCCCccHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCCCcccHHHHHHHH
Q psy17871 66 GDRICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQII 127 (189)
Q Consensus 66 ~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l 127 (189)
....|..+|.|++|.|+..|+..+. + ...+..+...|..+|.|++|.||.+|+...+
T Consensus 50 l~w~F~~lD~d~DG~Ls~~EL~~~~--l---~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 50 VGWMFNQLDGNYDGKLSHHELAPIR--L---DPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHH--c---cchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 3567778888888888888877665 1 2223467888999999999999999988887
No 64
>KOG4065|consensus
Probab=98.18 E-value=6.5e-06 Score=53.93 Aligned_cols=65 Identities=26% Similarity=0.488 Sum_probs=55.5
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHhC-------CC-CCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHH
Q psy17871 104 EHAFRIFDFDGDDMLGMTDLKQIIDRLTG-------TH-HLSDNDIQHLIQNILDEADLDDDGALSFAEFELF 168 (189)
Q Consensus 104 ~~~F~~~D~~~~G~I~~~el~~~l~~~~~-------~~-~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~ 168 (189)
-.-|.+.|-|++|.|+.-|+..++...-. +. -.++.|++.+|+.+++.-|.|+||.|+|-||.+.
T Consensus 70 fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 70 FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 36699999999999999999999987532 10 3568899999999999999999999999999864
No 65
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.18 E-value=3.2e-06 Score=42.10 Aligned_cols=25 Identities=36% Similarity=0.656 Sum_probs=22.8
Q ss_pred HHHHHcCCCCCCcccHHHHHHHHHh
Q psy17871 147 NILDEADLDDDGALSFAEFELFIEK 171 (189)
Q Consensus 147 ~~~~~~d~~~dg~I~~~eF~~~~~~ 171 (189)
.+|+.+|.|+||.|+++||..++++
T Consensus 4 ~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 4 EAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 4499999999999999999999875
No 66
>KOG0751|consensus
Probab=98.15 E-value=1.4e-05 Score=64.87 Aligned_cols=125 Identities=19% Similarity=0.259 Sum_probs=83.3
Q ss_pred HHHHHHhhCCCCCCCCCCCccchhhhhc-cccc------ccCChHHHHHHHhcCCCCCCccHHHHHHHHhhcCCCCChhh
Q psy17871 29 AHQKFKSLAPEKVGHNKNAKLPMTKILL-YPQL------RVNPFGDRICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPV 101 (189)
Q Consensus 29 ~~~~F~~~d~~~~~~~~~g~i~~~e~~~-l~~~------~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~ 101 (189)
...+|+.+|+.+ +|.++.+++.. +... .++..++.|...|.......++|.+|.+++..+. .+
T Consensus 110 ~~~aFqlFDr~~-----~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~-----~E 179 (694)
T KOG0751|consen 110 FEVAFQLFDRLG-----NGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQ-----LE 179 (694)
T ss_pred HHHHHHHhcccC-----CCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHH-----HH
Confidence 456677777777 77777777766 4332 2334455555566555556677777777776542 23
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHH
Q psy17871 102 KAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELF 168 (189)
Q Consensus 102 ~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~ 168 (189)
..+++|+..|+.++|.||.=++.+++..... ++....++... ......+...++++..|..+
T Consensus 180 ~~~qafr~~d~~~ng~is~Ldfq~imvt~~~--h~lt~~v~~nl---v~vagg~~~H~vSf~yf~af 241 (694)
T KOG0751|consen 180 HAEQAFREKDKAKNGFISVLDFQDIMVTIRI--HLLTPFVEENL---VSVAGGNDSHQVSFSYFNAF 241 (694)
T ss_pred HHHHHHHHhcccCCCeeeeechHhhhhhhhh--hcCCHHHhhhh---hhhcCCCCccccchHHHHHH
Confidence 5789999999999999999999999988877 56655555552 23333444456777666553
No 67
>KOG4251|consensus
Probab=98.14 E-value=9.1e-06 Score=60.35 Aligned_cols=57 Identities=7% Similarity=0.131 Sum_probs=36.3
Q ss_pred HHHHHHhhCCCCCCCCCCCccchhhhhc-ccccccC------ChHHHHHHHhcCCCCCCccHHHHHHHH
Q psy17871 29 AHQKFKSLAPEKVGHNKNAKLPMTKILL-YPQLRVN------PFGDRICHIFSSSHDGDCTFEDFLDMM 90 (189)
Q Consensus 29 ~~~~F~~~d~~~~~~~~~g~i~~~e~~~-l~~~~~~------~~~~~l~~~~d~~~~g~i~~~ef~~~~ 90 (189)
+..+|.+.|-+. +|+|+..++++ +...... -..+.-|+++|++++|.|+|++|..-+
T Consensus 103 lmviFsKvDVNt-----DrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkF 166 (362)
T KOG4251|consen 103 LMVIFSKVDVNT-----DRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKF 166 (362)
T ss_pred HHHHHhhcccCc-----cccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHH
Confidence 677788888777 88888888877 3321110 012234666777888888888875443
No 68
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.14 E-value=3.6e-06 Score=40.41 Aligned_cols=25 Identities=28% Similarity=0.692 Sum_probs=22.0
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHH
Q psy17871 103 AEHAFRIFDFDGDDMLGMTDLKQII 127 (189)
Q Consensus 103 l~~~F~~~D~~~~G~I~~~el~~~l 127 (189)
++.+|+.+|.|++|.|+.+|+.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678999999999999999998864
No 69
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.11 E-value=2.1e-05 Score=50.74 Aligned_cols=28 Identities=7% Similarity=0.274 Sum_probs=14.4
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHH
Q psy17871 102 KAEHAFRIFDFDGDDMLGMTDLKQIIDR 129 (189)
Q Consensus 102 ~l~~~F~~~D~~~~G~I~~~el~~~l~~ 129 (189)
.+..+++.+|.+++|.|+.+||..++..
T Consensus 52 ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 52 AVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 4445555555555555555555544443
No 70
>KOG0041|consensus
Probab=98.10 E-value=1.4e-05 Score=57.54 Aligned_cols=113 Identities=14% Similarity=0.241 Sum_probs=81.3
Q ss_pred HHHhhcCCCHHHHH-HHHHHHhhCCCCCCCCCCCccchhhhhc-ccccccCCh---HHHHHHHhcCCCCCCccHHHHHHH
Q psy17871 15 DYEDLTYFTKKEIL-AHQKFKSLAPEKVGHNKNAKLPMTKILL-YPQLRVNPF---GDRICHIFSSSHDGDCTFEDFLDM 89 (189)
Q Consensus 15 ~~~~~~~~~~~e~~-~~~~F~~~d~~~~~~~~~g~i~~~e~~~-l~~~~~~~~---~~~l~~~~d~~~~g~i~~~ef~~~ 89 (189)
-..+.+.|+..+|+ +...|+.+|.+. ||+|+..+++. +..+|-+-+ ...+..-+|.|.+|.|+|.+|+-+
T Consensus 86 ~yteF~eFsrkqIk~~~~~Fk~yDe~r-----DgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLI 160 (244)
T KOG0041|consen 86 VYTEFSEFSRKQIKDAESMFKQYDEDR-----DGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLI 160 (244)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhcccc-----cccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHH
Confidence 34455578999999 999999999999 99999999999 877775543 566777788899999999999988
Q ss_pred HhhcCCCC-ChhhHHHHHHHH--hcCCCCCcccHHHHHHHHHHHhC
Q psy17871 90 MSVFSESA-PKPVKAEHAFRI--FDFDGDDMLGMTDLKQIIDRLTG 132 (189)
Q Consensus 90 ~~~~~~~~-~~~~~l~~~F~~--~D~~~~G~I~~~el~~~l~~~~~ 132 (189)
+.....+. .....+...=+. .|...-|..-...|..+=-....
T Consensus 161 frkaaagEL~~ds~~~~LAr~~eVDVskeGV~GAknFFeAKI~~qs 206 (244)
T KOG0041|consen 161 FRKAAAGELQEDSGLLRLARLSEVDVSKEGVSGAKNFFEAKIEAQS 206 (244)
T ss_pred HHHHhccccccchHHHHHHHhcccchhhhhhhhHHHHHHHHHHhhC
Confidence 87643321 122233333333 77777787777766655444333
No 71
>KOG0751|consensus
Probab=98.10 E-value=9.4e-05 Score=60.19 Aligned_cols=104 Identities=20% Similarity=0.252 Sum_probs=75.8
Q ss_pred CCCHHHHH-HHHHHHhhCCCCCCCCCCCccchhhhhc--ccccc---cCChHHHHHH-HhcCCCCCCccHHHHHHHHhhc
Q psy17871 21 YFTKKEIL-AHQKFKSLAPEKVGHNKNAKLPMTKILL--YPQLR---VNPFGDRICH-IFSSSHDGDCTFEDFLDMMSVF 93 (189)
Q Consensus 21 ~~~~~e~~-~~~~F~~~d~~~~~~~~~g~i~~~e~~~--l~~~~---~~~~~~~l~~-~~d~~~~g~i~~~ef~~~~~~~ 93 (189)
+-.++++. +.-.|...+.++ ....+.++|.+ +.-++ .++...++.+ +.|..+||.|+|.||+.+-..+
T Consensus 29 ra~~~eLr~if~~~as~e~~g-----e~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~l 103 (694)
T KOG0751|consen 29 RADPKELRSIFLKYASIEKNG-----ESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVL 103 (694)
T ss_pred cCChHHHHHHHHHHhHHhhcc-----ccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhc
Confidence 34455555 555566666777 88999999988 44333 3333333333 3456789999999999988877
Q ss_pred CCCCChhhHHHHHHHHhcCCCCCcccHHHHHHHHHHHhC
Q psy17871 94 SESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTG 132 (189)
Q Consensus 94 ~~~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~ 132 (189)
|.. +.....+|..||+.++|.+|.+++.+++.....
T Consensus 104 C~p---Dal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l 139 (694)
T KOG0751|consen 104 CAP---DALFEVAFQLFDRLGNGEVSFEDVADIFGQTNL 139 (694)
T ss_pred cCc---hHHHHHHHHHhcccCCCceehHHHHHHHhcccc
Confidence 754 235678999999999999999999999987543
No 72
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.05 E-value=1.1e-05 Score=51.49 Aligned_cols=59 Identities=19% Similarity=0.300 Sum_probs=36.8
Q ss_pred HHHHHHh-hCCCCCCCCCCC-ccchhhhhc-ccccc-----cC---ChHHHHHHHhcCCCCCCccHHHHHHHHhh
Q psy17871 29 AHQKFKS-LAPEKVGHNKNA-KLPMTKILL-YPQLR-----VN---PFGDRICHIFSSSHDGDCTFEDFLDMMSV 92 (189)
Q Consensus 29 ~~~~F~~-~d~~~~~~~~~g-~i~~~e~~~-l~~~~-----~~---~~~~~l~~~~d~~~~g~i~~~ef~~~~~~ 92 (189)
+..+|.. .+.++ +| .|+.+||.. +.... .. ....+++..+|.|++|.|+|+||+.++..
T Consensus 11 l~~~F~~y~~~dg-----~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 11 LIAVFQKYAGKDG-----DSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred HHHHHHHHhccCC-----CcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 6777877 55656 55 788888877 54331 11 12345555666677777777777766654
No 73
>KOG0030|consensus
Probab=98.04 E-value=7.4e-05 Score=50.79 Aligned_cols=105 Identities=10% Similarity=0.140 Sum_probs=79.9
Q ss_pred hHHHHHHHhcCCCCCCccHHHHHHHHhhcCCCCChhhHHHHHHHHhcCC--CCCcccHHHHHHHHHHHhCCCCCCHHHHH
Q psy17871 65 FGDRICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFD--GDDMLGMTDLKQIIDRLTGTHHLSDNDIQ 142 (189)
Q Consensus 65 ~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~~--~~G~I~~~el~~~l~~~~~~~~~~~~e~~ 142 (189)
..+++|.+||..+||.|++.+.-..+..+..... ...+..+...++++ +--.|+.+++.-++..+.. .-..-..+
T Consensus 12 e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT-~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vak--nk~q~t~e 88 (152)
T KOG0030|consen 12 EFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPT-NAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAK--NKDQGTYE 88 (152)
T ss_pred HHHHHHHHHhccCcccccHHHHHHHHHHhcCCCc-HHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHh--ccccCcHH
Confidence 4578899999999999999998887776654333 34788888888877 5578999999999988876 33333333
Q ss_pred HHHHHHHHHcCCCCCCcccHHHHHHHHHhCh
Q psy17871 143 HLIQNILDEADLDDDGALSFAEFELFIEKSQ 173 (189)
Q Consensus 143 ~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~ 173 (189)
+.++. ++-+|..++|.|.+.++.+.++...
T Consensus 89 dfveg-LrvFDkeg~G~i~~aeLRhvLttlG 118 (152)
T KOG0030|consen 89 DFVEG-LRVFDKEGNGTIMGAELRHVLTTLG 118 (152)
T ss_pred HHHHH-HHhhcccCCcceeHHHHHHHHHHHH
Confidence 33333 7899999999999999999888654
No 74
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.03 E-value=3.8e-05 Score=48.94 Aligned_cols=61 Identities=8% Similarity=0.202 Sum_probs=34.6
Q ss_pred HHHHHHhhCCCCCCCCCCCccchhhhhc-cc---ccccCChHHHH---HHHhcCCCCCCccHHHHHHHHhh
Q psy17871 29 AHQKFKSLAPEKVGHNKNAKLPMTKILL-YP---QLRVNPFGDRI---CHIFSSSHDGDCTFEDFLDMMSV 92 (189)
Q Consensus 29 ~~~~F~~~d~~~~~~~~~g~i~~~e~~~-l~---~~~~~~~~~~l---~~~~d~~~~g~i~~~ef~~~~~~ 92 (189)
+-.+|.+++.+. +.+|+|+.++|.. +. .+|.+++.+++ ++.+|.+++|.|+|.+|+.++..
T Consensus 12 ~i~~F~~y~~~~---~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 12 LVAIFHKYSGRE---GDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHHccC---CCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 666677776532 0145777777777 53 24555554433 33345566667777777666544
No 75
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.93 E-value=7.7e-05 Score=48.96 Aligned_cols=65 Identities=22% Similarity=0.387 Sum_probs=54.6
Q ss_pred hhhHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhC
Q psy17871 99 KPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKS 172 (189)
Q Consensus 99 ~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~ 172 (189)
+......+|...|+ ++|.|+.++.+.++... +++.+.+..| ...+|.+++|.++++||+-++.-.
T Consensus 8 e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S----~L~~~~L~~I----W~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 8 EKQKYDQIFQSLDP-QDGKISGDQAREFFMKS----GLPRDVLAQI----WNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp HHHHHHHHHHCTSS-STTEEEHHHHHHHHHHT----TSSHHHHHHH----HHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHc----CCCHHHHHHH----HhhhcCCCCCcCCHHHHHHHHHHH
Confidence 33477899999985 68999999999998775 7888888888 599999999999999999987743
No 76
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.92 E-value=5.5e-05 Score=61.02 Aligned_cols=55 Identities=24% Similarity=0.427 Sum_probs=46.3
Q ss_pred ChhhHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHh
Q psy17871 98 PKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEK 171 (189)
Q Consensus 98 ~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~ 171 (189)
.....++.+|+.+|.+++|.|+.+|+.. ++.+ |..+|.|+||.|+++||..++..
T Consensus 331 ~~~~~l~~aF~~~D~dgdG~Is~~E~~~---------------~~~~----F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 331 AFTHAAQEIFRLYDLDGDGFITREEWLG---------------SDAV----FDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred hhhHHHHHHHHHhCCCCCCcCcHHHHHH---------------HHHH----HHHhCCCCCCCCcHHHHHHHHHH
Confidence 3445789999999999999999999841 2233 89999999999999999998874
No 77
>PF14658 EF-hand_9: EF-hand domain
Probab=97.81 E-value=0.00012 Score=43.53 Aligned_cols=58 Identities=12% Similarity=0.326 Sum_probs=25.0
Q ss_pred HHHhcCCCCCCccHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCC-CcccHHHHHHHH
Q psy17871 70 CHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGD-DMLGMTDLKQII 127 (189)
Q Consensus 70 ~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~-G~I~~~el~~~l 127 (189)
|.++|+.+.|.|.-..++.++.....+.+.+.++......+|+++. |.|+.+.|..++
T Consensus 4 F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM 62 (66)
T PF14658_consen 4 FDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIM 62 (66)
T ss_pred hhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHH
Confidence 3344444444444444444444433322333344444444444444 444444444444
No 78
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.75 E-value=0.00014 Score=40.84 Aligned_cols=48 Identities=23% Similarity=0.472 Sum_probs=39.3
Q ss_pred ccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHh
Q psy17871 118 LGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEK 171 (189)
Q Consensus 118 I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~ 171 (189)
++..|++.+|+.+.. .+++.-+..+ |+.+|.+++|.+..+||..+...
T Consensus 2 msf~Evk~lLk~~NI--~~~~~yA~~L----Fq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNI--EMDDEYARQL----FQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp BEHHHHHHHHHHTT------HHHHHHH----HHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcc--CcCHHHHHHH----HHHhcccCCCCccHHHHHHHHHH
Confidence 688999999999998 8999988887 89999999999999999998764
No 79
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.74 E-value=0.00013 Score=46.39 Aligned_cols=61 Identities=16% Similarity=0.261 Sum_probs=43.8
Q ss_pred HH-HHHHHHhhCCCCCCCCCCCccchhhhhc-cc-ccc---c----CChHHHHHHHhcCCCCCCccHHHHHHHHhhc
Q psy17871 27 IL-AHQKFKSLAPEKVGHNKNAKLPMTKILL-YP-QLR---V----NPFGDRICHIFSSSHDGDCTFEDFLDMMSVF 93 (189)
Q Consensus 27 ~~-~~~~F~~~d~~~~~~~~~g~i~~~e~~~-l~-~~~---~----~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 93 (189)
+. +..+|.+++++ .+.++..||.. +. .++ . +.....++..+|.|+||.|+|.||+.++..+
T Consensus 7 i~~lI~~FhkYaG~------~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 7 MEKMMLTFHKFAGE------KNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHcCC------CCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 44 77889999865 56899999888 42 221 1 1234567777888899999999998888664
No 80
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.66 E-value=7.4e-05 Score=35.78 Aligned_cols=24 Identities=33% Similarity=0.715 Sum_probs=20.9
Q ss_pred HHHHHHcCCCCCCcccHHHHHHHH
Q psy17871 146 QNILDEADLDDDGALSFAEFELFI 169 (189)
Q Consensus 146 ~~~~~~~d~~~dg~I~~~eF~~~~ 169 (189)
+.+|..+|.|+||.|+++||.+++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHC
Confidence 345899999999999999998864
No 81
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.65 E-value=0.00024 Score=45.27 Aligned_cols=28 Identities=14% Similarity=0.313 Sum_probs=15.1
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHH
Q psy17871 102 KAEHAFRIFDFDGDDMLGMTDLKQIIDR 129 (189)
Q Consensus 102 ~l~~~F~~~D~~~~G~I~~~el~~~l~~ 129 (189)
.+..+|+.+|.+++|.|+.+||..++..
T Consensus 52 ~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 52 AIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 4555555555555555555555555543
No 82
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.55 E-value=0.00047 Score=43.29 Aligned_cols=71 Identities=17% Similarity=0.394 Sum_probs=55.4
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCh
Q psy17871 102 KAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQ 173 (189)
Q Consensus 102 ~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~ 173 (189)
++..+|..+-. +.+.||.++|..+|+.......++.+++..++.+..........+.+++++|..++.+..
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~ 71 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDE 71 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTT
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCc
Confidence 36789999955 899999999999998875532578999999976654444334578999999999998654
No 83
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.53 E-value=2.6e-05 Score=52.08 Aligned_cols=59 Identities=22% Similarity=0.329 Sum_probs=40.6
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHH
Q psy17871 102 KAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELF 168 (189)
Q Consensus 102 ~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~ 168 (189)
.+.-.|..+|.|++|.|+..|+..+...+ . +. +.++..+++..|.|+||.|+..||..+
T Consensus 55 ~~~W~F~~LD~n~d~~L~~~El~~l~~~l-~--~~-----e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 55 VVHWKFCQLDRNKDGVLDRSELKPLRRPL-M--PP-----EHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp HHHHHHHHH--T-SSEE-TTTTGGGGSTT-S--TT-----GGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhHhhhcCCCCCccCHHHHHHHHHHH-h--hh-----HHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 56677999999999999999999776533 1 12 223445589999999999999999864
No 84
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.49 E-value=0.00036 Score=56.41 Aligned_cols=52 Identities=17% Similarity=0.350 Sum_probs=44.9
Q ss_pred HHHHHHHhcCCCCCCccHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCCCcccHHHHHHHHHHHh
Q psy17871 66 GDRICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLT 131 (189)
Q Consensus 66 ~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~ 131 (189)
...+|.++|.+++|.|+..||+. +..+|..+|.|++|.|+.+||.+.+....
T Consensus 336 l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~ 387 (391)
T PRK12309 336 AQEIFRLYDLDGDGFITREEWLG--------------SDAVFDALDLNHDGKITPEEMRAGLGAAL 387 (391)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHH--------------HHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 35688889999999999999952 45789999999999999999999987653
No 85
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.49 E-value=0.00011 Score=48.27 Aligned_cols=66 Identities=21% Similarity=0.302 Sum_probs=48.1
Q ss_pred CCCHHHHH-HHHHHHhhCCCCCCCCCCCccchhhhhc-ccccccC-ChHHHHHHHhcCCCCCCccHHHHHHHHhh
Q psy17871 21 YFTKKEIL-AHQKFKSLAPEKVGHNKNAKLPMTKILL-YPQLRVN-PFGDRICHIFSSSHDGDCTFEDFLDMMSV 92 (189)
Q Consensus 21 ~~~~~e~~-~~~~F~~~d~~~~~~~~~g~i~~~e~~~-l~~~~~~-~~~~~l~~~~d~~~~g~i~~~ef~~~~~~ 92 (189)
+++++|.. +..+|..+++ + +|.|+..+... +..-+.. .....|+.+.|.+++|.+++.||+..+..
T Consensus 3 ~ls~~e~~~y~~~F~~l~~-~-----~g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 3 KLSPEEKQKYDQIFQSLDP-Q-----DGKISGDQAREFFMKSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp --SCCHHHHHHHHHHCTSS-S-----TTEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCC-C-----CCeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 35666777 8888988875 5 78899888888 6555544 45677888888888899999998877644
No 86
>KOG0169|consensus
Probab=97.47 E-value=0.0024 Score=54.72 Aligned_cols=142 Identities=16% Similarity=0.284 Sum_probs=106.5
Q ss_pred CCHHHHH-HHHHHHhhCCCCCCCCCCCccchhhhhc-ccccccCChHH---HHHHHhcCCCCCCccHHHHHHHHhhcCCC
Q psy17871 22 FTKKEIL-AHQKFKSLAPEKVGHNKNAKLPMTKILL-YPQLRVNPFGD---RICHIFSSSHDGDCTFEDFLDMMSVFSES 96 (189)
Q Consensus 22 ~~~~e~~-~~~~F~~~d~~~~~~~~~g~i~~~e~~~-l~~~~~~~~~~---~l~~~~d~~~~g~i~~~ef~~~~~~~~~~ 96 (189)
....... +..+|+..|+++ +|.++..+... +..+....... .+++-.+...++.+...+|..+.......
T Consensus 130 ~~~~~~~wi~~~~~~ad~~~-----~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~r 204 (746)
T KOG0169|consen 130 QRSRREHWIHSIFQEADKNK-----NGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKR 204 (746)
T ss_pred hcchHHHHHHHHHHHHcccc-----ccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccC
Confidence 3333344 899999999999 99999999988 76665544433 33444456778999999999988776543
Q ss_pred CChhhHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCh
Q psy17871 97 APKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQ 173 (189)
Q Consensus 97 ~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~ 173 (189)
. .+...|..+-.+ .++++.++|..+|.......+.+.+.++.+|+.+-..-.....+.++.+.|..++....
T Consensus 205 p----ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S~~ 276 (746)
T KOG0169|consen 205 P----EVYFLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFSPD 276 (746)
T ss_pred c----hHHHHHHHHhCC-CCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcCcc
Confidence 2 567888888544 89999999999999886544788999999986654444445567799999999887543
No 87
>KOG0040|consensus
Probab=97.45 E-value=0.00036 Score=63.47 Aligned_cols=67 Identities=19% Similarity=0.358 Sum_probs=56.6
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHH-----HHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhC
Q psy17871 102 KAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDN-----DIQHLIQNILDEADLDDDGALSFAEFELFIEKS 172 (189)
Q Consensus 102 ~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~-----e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~ 172 (189)
+...+|+.||++.+|.++..+|+..|+.+|...|+-++ +++.+ +..+||+.+|.|+..+|..+|.++
T Consensus 2254 EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~----ld~vDP~r~G~Vsl~dY~afmi~~ 2325 (2399)
T KOG0040|consen 2254 EFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEI----LDLVDPNRDGYVSLQDYMAFMISK 2325 (2399)
T ss_pred HHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHH----HHhcCCCCcCcccHHHHHHHHHhc
Confidence 45689999999999999999999999999984323233 56666 899999999999999999988764
No 88
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.37 E-value=0.00099 Score=37.42 Aligned_cols=49 Identities=14% Similarity=0.261 Sum_probs=37.1
Q ss_pred ccHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q psy17871 81 CTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRL 130 (189)
Q Consensus 81 i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~ 130 (189)
++|.|...++..+.-..+.. -+..+|+..|++++|.+..+|+..+++.+
T Consensus 2 msf~Evk~lLk~~NI~~~~~-yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDE-YARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp BEHHHHHHHHHHTT----HH-HHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHH-HHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 67888888887665444443 78899999999999999999999998764
No 89
>KOG0377|consensus
Probab=97.37 E-value=0.00085 Score=54.11 Aligned_cols=68 Identities=12% Similarity=0.244 Sum_probs=56.7
Q ss_pred ChHHHHHHHhcCCCCCCccHHHHHHHHhhc---CCCCChhhHHHHHHHHhcCCCCCcccHHHHHHHHHHHh
Q psy17871 64 PFGDRICHIFSSSHDGDCTFEDFLDMMSVF---SESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLT 131 (189)
Q Consensus 64 ~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~---~~~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~ 131 (189)
.+.+-||.++|.+++|.|+.+||.+.+..+ ....-....+...-+.+|-|++|.|+.+||..+.+...
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlvd 617 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLVD 617 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhhc
Confidence 356779999999999999999999988764 34444455888999999999999999999999887653
No 90
>KOG0046|consensus
Probab=97.34 E-value=0.00085 Score=55.11 Aligned_cols=65 Identities=23% Similarity=0.358 Sum_probs=53.3
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHH
Q psy17871 102 KAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIE 170 (189)
Q Consensus 102 ~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~ 170 (189)
.++..|...| +++|+|+..++..++...+. .. ....++.+++++...+++.+|.|+|++|+..+.
T Consensus 20 ~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~--~~-g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~ 84 (627)
T KOG0046|consen 20 ELKEKFNKLD-DQKGYVTVYELPDAFKKAKL--PL-GYFVREEIKEILGEVGVDADGRVEFEEFVGIFL 84 (627)
T ss_pred HHHHHHHhhc-CCCCeeehHHhHHHHHHhcc--cc-cchhHHHHHHHHhccCCCcCCccCHHHHHHHHH
Confidence 6788999999 99999999999999999876 33 333344455558999999999999999999554
No 91
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.10 E-value=0.00081 Score=32.20 Aligned_cols=27 Identities=33% Similarity=0.730 Sum_probs=23.3
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHH
Q psy17871 103 AEHAFRIFDFDGDDMLGMTDLKQIIDR 129 (189)
Q Consensus 103 l~~~F~~~D~~~~G~I~~~el~~~l~~ 129 (189)
++.+|+.+|.+++|.|+..++..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 567899999999999999999988764
No 92
>KOG1029|consensus
Probab=97.06 E-value=0.0054 Score=52.80 Aligned_cols=61 Identities=26% Similarity=0.392 Sum_probs=52.2
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHH
Q psy17871 102 KAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIE 170 (189)
Q Consensus 102 ~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~ 170 (189)
+.+..|..+|+..+|++|...=+.+|... .++...+..| ....|.|+||+++-+||+-.+.
T Consensus 196 KY~QlFNa~DktrsG~Lsg~qaR~aL~qS----~Lpq~~LA~I----W~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 196 KYRQLFNALDKTRSGYLSGQQARSALGQS----GLPQNQLAHI----WTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred HHHHHhhhcccccccccccHHHHHHHHhc----CCchhhHhhh----eeeeccCCCCcccHHHHHHHHH
Confidence 46789999999999999999999888664 6677777777 4788999999999999998665
No 93
>KOG2562|consensus
Probab=97.06 E-value=0.0016 Score=52.80 Aligned_cols=129 Identities=18% Similarity=0.202 Sum_probs=86.0
Q ss_pred HHHHHHhhCCCCCCCCCCCccchhhhhc---ccccccCC---------------hHHHH---HHHhcCCCCCCccHHHHH
Q psy17871 29 AHQKFKSLAPEKVGHNKNAKLPMTKILL---YPQLRVNP---------------FGDRI---CHIFSSSHDGDCTFEDFL 87 (189)
Q Consensus 29 ~~~~F~~~d~~~~~~~~~g~i~~~e~~~---l~~~~~~~---------------~~~~l---~~~~d~~~~g~i~~~ef~ 87 (189)
+.++|--+++.+ +|+|+..++.. +..+..-. ....+ +-.+|++++|.|+-++..
T Consensus 227 i~rIFy~~nrs~-----tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ 301 (493)
T KOG2562|consen 227 IQRIFYYLNRSR-----TGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLK 301 (493)
T ss_pred hhhhheeeCCcc-----CCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHH
Confidence 678888899999 99999999877 32221100 01122 223567788888888865
Q ss_pred HHHhhcCCCCChhhHHHHHHH----HhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHH
Q psy17871 88 DMMSVFSESAPKPVKAEHAFR----IFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFA 163 (189)
Q Consensus 88 ~~~~~~~~~~~~~~~l~~~F~----~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~ 163 (189)
.+-.... ...-+..+|. .+-...+|.++.+++..++-+.-. .-++.-++-. |+.+|.+++|.++-.
T Consensus 302 ry~d~tl----t~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~--k~t~~SleYw----FrclDld~~G~Lt~~ 371 (493)
T KOG2562|consen 302 RYGDHTL----TERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEED--KDTPASLEYW----FRCLDLDGDGILTLN 371 (493)
T ss_pred HHhccch----hhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhcc--CCCccchhhh----eeeeeccCCCcccHH
Confidence 5543322 2335667777 344566788999999888888766 5555544433 888899999999888
Q ss_pred HHHHHHHhC
Q psy17871 164 EFELFIEKS 172 (189)
Q Consensus 164 eF~~~~~~~ 172 (189)
+...+....
T Consensus 372 el~~fyeeq 380 (493)
T KOG2562|consen 372 ELRYFYEEQ 380 (493)
T ss_pred HHHHHHHHH
Confidence 877766543
No 94
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.05 E-value=0.00037 Score=35.11 Aligned_cols=25 Identities=8% Similarity=0.201 Sum_probs=16.9
Q ss_pred HHHHHHhhCCCCCCCCCCCccchhhhhc-cc
Q psy17871 29 AHQKFKSLAPEKVGHNKNAKLPMTKILL-YP 58 (189)
Q Consensus 29 ~~~~F~~~d~~~~~~~~~g~i~~~e~~~-l~ 58 (189)
+..+|..+|.++ +|.|+.+||.. +.
T Consensus 2 l~~~F~~~D~d~-----dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKDG-----DGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TTS-----SSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCC-----CCcCcHHHHHHHHH
Confidence 356677777777 77777777776 54
No 95
>KOG4251|consensus
Probab=96.89 E-value=0.0014 Score=49.05 Aligned_cols=64 Identities=20% Similarity=0.332 Sum_probs=48.3
Q ss_pred hHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHH
Q psy17871 101 VKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHL--SDNDIQHLIQNILDEADLDDDGALSFAEFELFI 169 (189)
Q Consensus 101 ~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~--~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~ 169 (189)
.++..+|...|.|.+|+||..|+++.+..--.. ++ ..++.+. .|+..|+++||.|++++|.--+
T Consensus 101 rklmviFsKvDVNtDrkisAkEmqrwImektaE-HfqeameeSkt----hFraVDpdgDGhvsWdEykvkF 166 (362)
T KOG4251|consen 101 RKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAE-HFQEAMEESKT----HFRAVDPDGDGHVSWDEYKVKF 166 (362)
T ss_pred HHHHHHHhhcccCccccccHHHHHHHHHHHHHH-HHHHHHhhhhh----heeeeCCCCCCceehhhhhhHH
Confidence 478899999999999999999999988653210 11 1122222 3899999999999999997633
No 96
>KOG0038|consensus
Probab=96.76 E-value=0.0069 Score=41.75 Aligned_cols=94 Identities=14% Similarity=0.234 Sum_probs=67.3
Q ss_pred HHHhhCCCCCCCCCCCccchhhhhc-cccccc----CChHHHHHHHhcCCCCCCccHHHHHHHHhhcCCCCChhhHH---
Q psy17871 32 KFKSLAPEKVGHNKNAKLPMTKILL-YPQLRV----NPFGDRICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKA--- 103 (189)
Q Consensus 32 ~F~~~d~~~~~~~~~g~i~~~e~~~-l~~~~~----~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l--- 103 (189)
+...+..+| .|.++..+|.. +..+.. .......|.++|-++++.|.-.+....+..+.......+++
T Consensus 76 i~e~FSeDG-----~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i 150 (189)
T KOG0038|consen 76 ICEVFSEDG-----RGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELI 150 (189)
T ss_pred HHHHhccCC-----CCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHH
Confidence 345568889 99999999988 443321 12233456667879999999988888887765544333333
Q ss_pred -HHHHHHhcCCCCCcccHHHHHHHHHHH
Q psy17871 104 -EHAFRIFDFDGDDMLGMTDLKQIIDRL 130 (189)
Q Consensus 104 -~~~F~~~D~~~~G~I~~~el~~~l~~~ 130 (189)
..+...-|.||+|.|+..|+.+++...
T Consensus 151 ~ekvieEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 151 CEKVIEEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhC
Confidence 455666799999999999999988654
No 97
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=96.69 E-value=0.016 Score=36.86 Aligned_cols=75 Identities=9% Similarity=0.140 Sum_probs=47.3
Q ss_pred hHHHHHHHHhcCCCCCcccHHHHHHHHHHH-------hCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCh
Q psy17871 101 VKAEHAFRIFDFDGDDMLGMTDLKQIIDRL-------TGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQ 173 (189)
Q Consensus 101 ~~l~~~F~~~D~~~~G~I~~~el~~~l~~~-------~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~ 173 (189)
++.+++|+.+ .|++|.++...|..+|+.+ |. ..+---++..+...|.... ..-.|+-++|+.++...|
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE--~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~~eP 77 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGE--GPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLMSEP 77 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT---GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHHT--
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCc--cccccCcHHHHHHHhcccC--CCCccCHHHHHHHHHhCC
Confidence 4889999999 7899999999999998764 22 1111114445555588763 344699999999999999
Q ss_pred hHHhhhh
Q psy17871 174 DFAKWTS 180 (189)
Q Consensus 174 ~~~~~~~ 180 (189)
..+-|+.
T Consensus 78 q~lVWLP 84 (90)
T PF09069_consen 78 QSLVWLP 84 (90)
T ss_dssp TTTTHHH
T ss_pred CeeeHHH
Confidence 8776754
No 98
>PLN02952 phosphoinositide phospholipase C
Probab=96.58 E-value=0.035 Score=47.34 Aligned_cols=95 Identities=15% Similarity=0.284 Sum_probs=69.0
Q ss_pred CCCCccHHHHHHHHhhcC-CCCChhhHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcC--
Q psy17871 77 HDGDCTFEDFLDMMSVFS-ESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEAD-- 153 (189)
Q Consensus 77 ~~g~i~~~ef~~~~~~~~-~~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d-- 153 (189)
..|.++|++|..+...+. .......++..+|..+-. +.+.++.++|..+|.........+.+.+..++++++....
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 357999999988877653 222344589999999964 4478999999999998765314677888888766554432
Q ss_pred -CCCCCcccHHHHHHHHHhC
Q psy17871 154 -LDDDGALSFAEFELFIEKS 172 (189)
Q Consensus 154 -~~~dg~I~~~eF~~~~~~~ 172 (189)
....+.++++.|..++...
T Consensus 92 ~~~~~~~l~~~~F~~~l~s~ 111 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLLYD 111 (599)
T ss_pred ccccccCcCHHHHHHHHcCc
Confidence 1223469999999999853
No 99
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.40 E-value=0.0063 Score=40.60 Aligned_cols=53 Identities=15% Similarity=0.189 Sum_probs=21.2
Q ss_pred HHHHHhcCCCCCCccHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCCCcccHHHH
Q psy17871 68 RICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDL 123 (189)
Q Consensus 68 ~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~el 123 (189)
..|..+|.|++|.|+..|+..+...+ ...+..++..|+.-|.|++|.||..|.
T Consensus 58 W~F~~LD~n~d~~L~~~El~~l~~~l---~~~e~C~~~F~~~CD~n~d~~Is~~EW 110 (113)
T PF10591_consen 58 WKFCQLDRNKDGVLDRSELKPLRRPL---MPPEHCARPFFRSCDVNKDGKISLDEW 110 (113)
T ss_dssp HHHHHH--T-SSEE-TTTTGGGGSTT---STTGGGHHHHHHHH-TT-SSSEEHHHH
T ss_pred hhHhhhcCCCCCccCHHHHHHHHHHH---hhhHHHHHHHHHHcCCCCCCCCCHHHH
Confidence 34444555555555555543333222 112224455555555555555555554
No 100
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.39 E-value=0.007 Score=28.69 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=22.0
Q ss_pred HHHHHcCCCCCCcccHHHHHHHHHh
Q psy17871 147 NILDEADLDDDGALSFAEFELFIEK 171 (189)
Q Consensus 147 ~~~~~~d~~~dg~I~~~eF~~~~~~ 171 (189)
.+|..+|.+++|.|++.+|..+++.
T Consensus 4 ~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 4 EAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 3489999999999999999998874
No 101
>KOG0046|consensus
Probab=96.16 E-value=0.012 Score=48.56 Aligned_cols=70 Identities=17% Similarity=0.365 Sum_probs=52.7
Q ss_pred hcCCCHHHHH-HHHHHHhhCCCCCCCCCCCccchhhhhc-ccccccCC---hHHHHHHH---hcCCCCCCccHHHHHHHH
Q psy17871 19 LTYFTKKEIL-AHQKFKSLAPEKVGHNKNAKLPMTKILL-YPQLRVNP---FGDRICHI---FSSSHDGDCTFEDFLDMM 90 (189)
Q Consensus 19 ~~~~~~~e~~-~~~~F~~~d~~~~~~~~~g~i~~~e~~~-l~~~~~~~---~~~~l~~~---~d~~~~g~i~~~ef~~~~ 90 (189)
++.+|.+|+. +...|.+.| ++ +|+++..++.. +...+... ..+++..+ .+.+.+|.|+|++|+..+
T Consensus 10 ~~~~tq~El~~l~~kF~~~d-~~-----~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~ 83 (627)
T KOG0046|consen 10 QSQLTQEELRELKEKFNKLD-DQ-----KGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIF 83 (627)
T ss_pred cccccHHHHHHHHHHHHhhc-CC-----CCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHH
Confidence 3568888888 999999999 77 99999999988 66554332 23444444 455889999999999977
Q ss_pred hhcC
Q psy17871 91 SVFS 94 (189)
Q Consensus 91 ~~~~ 94 (189)
..+.
T Consensus 84 ~~l~ 87 (627)
T KOG0046|consen 84 LNLK 87 (627)
T ss_pred Hhhh
Confidence 6543
No 102
>KOG4347|consensus
Probab=96.09 E-value=0.013 Score=49.59 Aligned_cols=111 Identities=18% Similarity=0.284 Sum_probs=77.3
Q ss_pred HHHHHHHhhcCCCHHHHH-HHHHHHhhC-CCCCCCCC--------CCccchhhhhc-ccccc----cCChHHHHHHHhcC
Q psy17871 11 EELQDYEDLTYFTKKEIL-AHQKFKSLA-PEKVGHNK--------NAKLPMTKILL-YPQLR----VNPFGDRICHIFSS 75 (189)
Q Consensus 11 ~~~~~~~~~~~~~~~e~~-~~~~F~~~d-~~~~~~~~--------~g~i~~~e~~~-l~~~~----~~~~~~~l~~~~d~ 75 (189)
..++.+.+...++.+++. ++.+|..-- .+...... ..+|+++.|.. ++.+. ......++|+.+|.
T Consensus 487 t~lrs~~~~~~lt~~dL~~lYd~f~~e~~~~~~~~~~~~p~~~~~eqyi~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~ 566 (671)
T KOG4347|consen 487 TILRSVVQTTSLTNTDLENLYDLFKEEHLTNSIGLGRSDPDFEAFEQYIDYAQFLEVFRELLPWAVSLIFLERLFRLLDD 566 (671)
T ss_pred HHHHhhcccCccCHHHHHHHHHHHHHHHhccCcccCCCCCCchHHHHHHHHhhHHHHhhccCchhHHHHHHHHHHHhccc
Confidence 345666677789999999 888887422 11100000 01244455554 33221 12245678999999
Q ss_pred CCCCCccHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCCCcccHHHH
Q psy17871 76 SHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDL 123 (189)
Q Consensus 76 ~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~el 123 (189)
+.+|.++|.+++..+..+......+ ++..+|+.+|++++ ..+.+|+
T Consensus 567 s~~g~Ltf~~lv~gL~~l~~~~~~e-k~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 567 SMTGLLTFKDLVSGLSILKAGDALE-KLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred CCcceeEHHHHHHHHHHHHhhhHHH-HHHHHHhhccCCcc-ccccccc
Confidence 9999999999999999877655555 89999999999999 9999988
No 103
>KOG1707|consensus
Probab=95.35 E-value=0.089 Score=44.39 Aligned_cols=137 Identities=15% Similarity=0.178 Sum_probs=87.3
Q ss_pred CCCHHHHH-HHHHHHhhCCCCCCCCCCCccchhhhhc--ccccccCChHHHHHH---HhcC---C--CCCCccHHHHHHH
Q psy17871 21 YFTKKEIL-AHQKFKSLAPEKVGHNKNAKLPMTKILL--YPQLRVNPFGDRICH---IFSS---S--HDGDCTFEDFLDM 89 (189)
Q Consensus 21 ~~~~~e~~-~~~~F~~~d~~~~~~~~~g~i~~~e~~~--l~~~~~~~~~~~l~~---~~d~---~--~~g~i~~~ef~~~ 89 (189)
.+.+.-++ +.++|..-|.+. +|.++-.++.. -..++.+.....+.. .... + .+..++...|+.+
T Consensus 188 elkp~~v~al~RIFki~D~d~-----D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL 262 (625)
T KOG1707|consen 188 ELKPRCVKALKRIFKISDSDN-----DGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFL 262 (625)
T ss_pred cccHHHHHHHHHHHhhhcccc-----ccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHH
Confidence 35566667 899999999999 99999998887 444554544433322 2221 1 1334566666654
Q ss_pred HhhcCCCC-----------------------------------------ChhhHHHHHHHHhcCCCCCcccHHHHHHHHH
Q psy17871 90 MSVFSESA-----------------------------------------PKPVKAEHAFRIFDFDGDDMLGMTDLKQIID 128 (189)
Q Consensus 90 ~~~~~~~~-----------------------------------------~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~ 128 (189)
-..+.... ..-+.+..+|..||.|+||.++..|+..+..
T Consensus 263 ~~lfiergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~ 342 (625)
T KOG1707|consen 263 NTLFIERGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFS 342 (625)
T ss_pred HHHHHHhccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhh
Confidence 43221100 0113578899999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHH
Q psy17871 129 RLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIE 170 (189)
Q Consensus 129 ~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~ 170 (189)
.+... +.+..--. ...-.+..|.++|+.|...++
T Consensus 343 ~~P~~-pW~~~~~~-------~~t~~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 343 TAPGS-PWTSSPYK-------DSTVKNERGWLTLNGFLSQWS 376 (625)
T ss_pred hCCCC-CCCCCccc-------ccceecccceeehhhHHHHHH
Confidence 88664 43311111 111234678999999998554
No 104
>KOG0035|consensus
Probab=95.26 E-value=0.2 Score=44.51 Aligned_cols=101 Identities=12% Similarity=0.027 Sum_probs=78.4
Q ss_pred hcCCCHHHHH-HHHHHHhhCCCCCCCCCCCccchhhhhc-ccccccCChH-----HHHHHHhcC---CCCCCccHHHHHH
Q psy17871 19 LTYFTKKEIL-AHQKFKSLAPEKVGHNKNAKLPMTKILL-YPQLRVNPFG-----DRICHIFSS---SHDGDCTFEDFLD 88 (189)
Q Consensus 19 ~~~~~~~e~~-~~~~F~~~d~~~~~~~~~g~i~~~e~~~-l~~~~~~~~~-----~~l~~~~d~---~~~g~i~~~ef~~ 88 (189)
....++..+. +...|..++... .|.++.+++.. +-.+|.+.-. .+.+.++.. +..|.|+|.+|..
T Consensus 738 sk~~sQ~v~~ElrAle~~~~~~d-----~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~d 812 (890)
T KOG0035|consen 738 SKGTSQYVLDELRALENEQDKID-----GGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFED 812 (890)
T ss_pred ccchhHHHHHHHHHHHhHHHHhh-----cccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHh
Confidence 3345565566 999999999988 88999999999 8888877653 345555433 4458999999999
Q ss_pred HHhhcCCCCChhhHHHHHHHHhcCCCCCcccHHHHHH
Q psy17871 89 MMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQ 125 (189)
Q Consensus 89 ~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~el~~ 125 (189)
.+.......+.+.++..+|+.+-+++. +|..+||..
T Consensus 813 dl~R~~e~l~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 813 DLEREYEDLDTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred HhhhhhhhhcHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 998766656666789999999987766 788888886
No 105
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=95.12 E-value=0.091 Score=37.44 Aligned_cols=128 Identities=13% Similarity=0.060 Sum_probs=77.7
Q ss_pred HHhhCCCCCCCCCCCccchhhhhc-ccccccCChHHHHHHHhcC------CCCCCccHHHHHHHHhhc-------CC---
Q psy17871 33 FKSLAPEKVGHNKNAKLPMTKILL-YPQLRVNPFGDRICHIFSS------SHDGDCTFEDFLDMMSVF-------SE--- 95 (189)
Q Consensus 33 F~~~d~~~~~~~~~g~i~~~e~~~-l~~~~~~~~~~~l~~~~d~------~~~g~i~~~ef~~~~~~~-------~~--- 95 (189)
..=+|+|+ ||.|.+-|-.. ++++|+++...-+...+=. ...+.+--.-|--.+... .+
T Consensus 13 vaFFDrd~-----DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~Y 87 (174)
T PF05042_consen 13 VAFFDRDK-----DGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAY 87 (174)
T ss_pred hceeCCCC-----CeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcccc
Confidence 33479999 99999999999 9999998866554443211 111111100011111110 00
Q ss_pred ---CCChhhHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHH
Q psy17871 96 ---SAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTH---HLSDNDIQHLIQNILDEADLDDDGALSFAEFELF 168 (189)
Q Consensus 96 ---~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~---~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~ 168 (189)
+.-.+++...+|..+++.+.+.+|..|+..++....... +.....++..+ .-.+..+.+|.+..|+-..+
T Consensus 88 D~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~---~y~L~~d~dG~l~Ke~iR~v 163 (174)
T PF05042_consen 88 DTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGA---LYILAKDKDGFLSKEDIRGV 163 (174)
T ss_pred ccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHH---HHHHHcCcCCcEeHHHHhhh
Confidence 111235789999999999999999999999998743311 23333444443 34445677899988876544
No 106
>KOG4578|consensus
Probab=94.79 E-value=0.021 Score=44.54 Aligned_cols=67 Identities=13% Similarity=0.203 Sum_probs=51.4
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhChh
Q psy17871 103 AEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQD 174 (189)
Q Consensus 103 l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~~ 174 (189)
+.--|..+|+|+++.|.+.|.+-+=+.+.. .-. .......+++..|.|+|.+|++.||..++-..+.
T Consensus 335 v~w~F~qLdkN~nn~i~rrEwKpFK~~l~k--~s~---~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~~ 401 (421)
T KOG4578|consen 335 VHWYFNQLDKNSNNDIERREWKPFKRVLLK--KSK---PRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEKE 401 (421)
T ss_pred eeeeeeeecccccCccchhhcchHHHHHHh--hcc---HHHHhhhcchhcccCCCceecHHHHhhhhccccc
Confidence 445699999999999999997766555433 222 3445566699999999999999999998875544
No 107
>KOG4065|consensus
Probab=94.12 E-value=0.081 Score=35.03 Aligned_cols=32 Identities=19% Similarity=0.203 Sum_probs=22.8
Q ss_pred hcCCCHHHHHHHHHHHhhCCCCCCCCCCCccchhhhhc
Q psy17871 19 LTYFTKKEILAHQKFKSLAPEKVGHNKNAKLPMTKILL 56 (189)
Q Consensus 19 ~~~~~~~e~~~~~~F~~~d~~~~~~~~~g~i~~~e~~~ 56 (189)
...+|+++++ ...|.++|-++ ++.|+--++..
T Consensus 60 ~a~mtpeqlq-fHYF~MHDldk-----nn~lDGiEl~k 91 (144)
T KOG4065|consen 60 VAKMTPEQLQ-FHYFSMHDLDK-----NNFLDGIELLK 91 (144)
T ss_pred hhhCCHHHHh-hhhhhhhccCc-----CCcchHHHHHH
Confidence 4467777775 23377888888 88888777766
No 108
>KOG3866|consensus
Probab=93.85 E-value=0.2 Score=39.08 Aligned_cols=88 Identities=11% Similarity=0.285 Sum_probs=58.2
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCCCcccHHHHHHHHHH----HhCCCCCCH-------HHHHHHHHHHHHH
Q psy17871 83 FEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDR----LTGTHHLSD-------NDIQHLIQNILDE 151 (189)
Q Consensus 83 ~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~----~~~~~~~~~-------~e~~~~i~~~~~~ 151 (189)
-.+....|.......+..-.-+-.|...|.|++|+++..||..++.. +..+ .-.+ ++...|-+.++..
T Consensus 226 kdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdp-kNeeDDM~EmeEErlRMREHVMk~ 304 (442)
T KOG3866|consen 226 KDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTKELEKVYDP-KNEEDDMKEMEEERLRMREHVMKQ 304 (442)
T ss_pred HHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHHHHHHHhcCC-CCcchHHHHHHHHHHHHHHHHHHh
Confidence 44445555443322222223357899999999999999999988865 3331 1122 2233455556889
Q ss_pred cCCCCCCcccHHHHHHHHHh
Q psy17871 152 ADLDDDGALSFAEFELFIEK 171 (189)
Q Consensus 152 ~d~~~dg~I~~~eF~~~~~~ 171 (189)
+|.|.|--|+.++|++.-.+
T Consensus 305 vDtNqDRlvtleEFL~~t~~ 324 (442)
T KOG3866|consen 305 VDTNQDRLVTLEEFLNDTDN 324 (442)
T ss_pred cccchhhhhhHHHHHhhhhh
Confidence 99999999999999987654
No 109
>KOG3555|consensus
Probab=92.96 E-value=0.067 Score=42.12 Aligned_cols=62 Identities=23% Similarity=0.282 Sum_probs=49.8
Q ss_pred hHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhC
Q psy17871 101 VKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKS 172 (189)
Q Consensus 101 ~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~ 172 (189)
..+-=+|..+|.|.+|.++..||+.+-.. -. +..|+-+|...|...||.|+-.||..++.+.
T Consensus 250 ds~gWMFnklD~N~Dl~Ld~sEl~~I~ld------kn----E~CikpFfnsCD~~kDg~iS~~EWC~CF~k~ 311 (434)
T KOG3555|consen 250 DSLGWMFNKLDTNYDLLLDQSELRAIELD------KN----EACIKPFFNSCDTYKDGSISTNEWCYCFQKS 311 (434)
T ss_pred hhhhhhhhccccccccccCHHHhhhhhcc------Cc----hhHHHHHHhhhcccccCccccchhhhhhccC
Confidence 35678899999999999999999876532 11 2345556899999999999999999988854
No 110
>KOG2243|consensus
Probab=92.90 E-value=0.18 Score=46.79 Aligned_cols=59 Identities=20% Similarity=0.477 Sum_probs=48.3
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHH
Q psy17871 105 HAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIE 170 (189)
Q Consensus 105 ~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~ 170 (189)
.-|+.||+||.|.|+..++..++... . +.+..+++-+ +..+..+.+...+|++|+.-+.
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~-k--~ytqse~dfl----lscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGH-K--HYTQSEIDFL----LSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhcc-c--cchhHHHHHH----HHhhccCccccccHHHHHHHhc
Confidence 34778999999999999999988653 2 5888888776 6888888888899999987554
No 111
>KOG1265|consensus
Probab=92.88 E-value=1.5 Score=39.16 Aligned_cols=114 Identities=17% Similarity=0.320 Sum_probs=81.0
Q ss_pred CCccchhhhhc-ccccccCChHHHHHHHhcC-----CCCC-----CccHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCC
Q psy17871 46 NAKLPMTKILL-YPQLRVNPFGDRICHIFSS-----SHDG-----DCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDG 114 (189)
Q Consensus 46 ~g~i~~~e~~~-l~~~~~~~~~~~l~~~~d~-----~~~g-----~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~ 114 (189)
.|+|....+.+ +..-..+ ..+...+.. +++. ..+++.|..++..++.. .++..+|..+-.++
T Consensus 162 ~grip~knI~k~F~~~k~~---KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klcpR----~eie~iF~ki~~~~ 234 (1189)
T KOG1265|consen 162 EGRIPVKNIIKTFSADKKE---KRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLCPR----PEIEEIFRKISGKK 234 (1189)
T ss_pred cccccHHHHHHHhhcCCch---hHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcCCc----hhHHHHHHHhccCC
Confidence 77888888877 5433322 333333221 2222 35677778888777643 37889999999999
Q ss_pred CCcccHHHHHHHHHHHh---------CCCCCCHHHHHHHHHHHHHHcCCCC----CCcccHHHHHHHHHh
Q psy17871 115 DDMLGMTDLKQIIDRLT---------GTHHLSDNDIQHLIQNILDEADLDD----DGALSFAEFELFIEK 171 (189)
Q Consensus 115 ~G~I~~~el~~~l~~~~---------~~~~~~~~e~~~~i~~~~~~~d~~~----dg~I~~~eF~~~~~~ 171 (189)
.-++|.++|..+|+.-. .+ .+++..+..+| ..+.+|. .|+|+-+.|+.++..
T Consensus 235 kpylT~~ql~dfln~~QrDpRLNeilfp-~~~~~r~~~li----ekyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 235 KPYLTKEQLVDFLNKKQRDPRLNEILFP-PADPRRIQSLI----EKYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred CccccHHHHHHHHhhhccCcchhhhhcC-CCCHHHHHHHH----HHcCCchhhhhccccchhhhHHHhhC
Confidence 99999999999998742 22 67788888885 6666554 699999999999886
No 112
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=92.76 E-value=0.76 Score=32.39 Aligned_cols=64 Identities=11% Similarity=0.265 Sum_probs=44.9
Q ss_pred HHHHHHh---cCCCCCcccHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHh
Q psy17871 104 EHAFRIF---DFDGDDMLGMTDLKQIIDRLTGTH-HLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEK 171 (189)
Q Consensus 104 ~~~F~~~---D~~~~G~I~~~el~~~l~~~~~~~-~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~ 171 (189)
+.+|..| -..+...++..-|..+++.++.-. .++...++-+ |..+-..+...|+|++|..+|..
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDii----F~Kvk~k~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDII----FSKVKAKGARKITFEQFLEALAE 69 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHH----HHHHT-SS-SEEEHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHH----HHHhhcCCCcccCHHHHHHHHHH
Confidence 3455555 356667899999999999986521 5777776665 78876666667999999998874
No 113
>KOG1955|consensus
Probab=92.62 E-value=0.3 Score=40.49 Aligned_cols=61 Identities=23% Similarity=0.384 Sum_probs=53.3
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHH
Q psy17871 102 KAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIE 170 (189)
Q Consensus 102 ~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~ 170 (189)
-...-|+.+-.|-.|+|+..--+.++.+. .+..+|+..| ....|.+.||.++..||+.++-
T Consensus 232 YYvnQFrtvQpDp~gfisGsaAknFFtKS----klpi~ELshI----WeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 232 YYVNQFRTVQPDPHGFISGSAAKNFFTKS----KLPIEELSHI----WELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHHhhhhcccCCcccccccHHHHhhhhhc----cCchHHHHHH----HhhcccCccccccHHHHHhhHh
Confidence 45677999999999999999888888775 7888999998 5999999999999999999764
No 114
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=92.12 E-value=0.79 Score=32.76 Aligned_cols=37 Identities=8% Similarity=0.177 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhChhHHh
Q psy17871 137 SDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQDFAK 177 (189)
Q Consensus 137 ~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~~~~~ 177 (189)
.++..++| |...+..+.+.+++.|..+++..+.+...
T Consensus 94 vp~kFe~i----F~kya~~~~d~LT~~E~~~m~~~nr~~~D 130 (174)
T PF05042_consen 94 VPQKFEEI----FSKYAKTGPDALTLRELWRMLKGNRNAND 130 (174)
T ss_pred CHHHHHHH----HHHhCCCCCCCcCHHHHHHHHHhccccCC
Confidence 35555666 88888877788999999999998766433
No 115
>KOG4666|consensus
Probab=91.66 E-value=0.63 Score=36.63 Aligned_cols=94 Identities=11% Similarity=0.066 Sum_probs=70.4
Q ss_pred HHHHHHhhCCCCCCCCCCCccchhhhhc-ccccccCC-h---HHHHHHHhcCCCCCCccHHHHHHHHhhcCCCCChhhHH
Q psy17871 29 AHQKFKSLAPEKVGHNKNAKLPMTKILL-YPQLRVNP-F---GDRICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKA 103 (189)
Q Consensus 29 ~~~~F~~~d~~~~~~~~~g~i~~~e~~~-l~~~~~~~-~---~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l 103 (189)
+...|..||.++ +|.+++.+--. +.-+.-.+ + .+.-|.+|+...||.+.=.+|-.++.....- ..-.+
T Consensus 261 l~~~f~LFde~~-----tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv--~~l~v 333 (412)
T KOG4666|consen 261 LAPTFMLFDEGT-----TGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGV--EVLRV 333 (412)
T ss_pred hhhhhheecCCC-----CCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCc--ceeec
Confidence 778899999999 99999888766 54443222 2 2344667888889999888887777654321 12256
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHH
Q psy17871 104 EHAFRIFDFDGDDMLGMTDLKQIIDR 129 (189)
Q Consensus 104 ~~~F~~~D~~~~G~I~~~el~~~l~~ 129 (189)
.-.|+.++...+|.|+.++++.+...
T Consensus 334 ~~lf~~i~q~d~~ki~~~~f~~fa~~ 359 (412)
T KOG4666|consen 334 PVLFPSIEQKDDPKIYASNFRKFAAT 359 (412)
T ss_pred cccchhhhcccCcceeHHHHHHHHHh
Confidence 78899999999999999999988755
No 116
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=91.24 E-value=0.27 Score=29.63 Aligned_cols=57 Identities=21% Similarity=0.304 Sum_probs=35.9
Q ss_pred hHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCC---CCCcccHHHHHH
Q psy17871 101 VKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLD---DDGALSFAEFEL 167 (189)
Q Consensus 101 ~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~---~dg~I~~~eF~~ 167 (189)
+.+..+|+.+ .++.++||.++|++.|. +++++-+++.|=...+++ ..|..+|..|.+
T Consensus 6 eqv~~aFr~l-A~~KpyVT~~dLr~~l~---------pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGKPYVTEEDLRRSLT---------PEQAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp HHHHHHHHHH-CTSSSCEEHHHHHHHS----------CCCHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred HHHHHHHHHH-HcCCCcccHHHHHHHcC---------cHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 4899999999 88999999999997752 222233321111222221 236789988875
No 117
>KOG4347|consensus
Probab=91.17 E-value=0.5 Score=40.44 Aligned_cols=78 Identities=19% Similarity=0.222 Sum_probs=49.6
Q ss_pred ccHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcc
Q psy17871 81 CTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGAL 160 (189)
Q Consensus 81 i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I 160 (189)
++|..|...+.....-.....-+...|+.+|.+++|.|+..++..-|..+.. +-..+.+.- ++..++++.+ ..
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~--~~~~ek~~l----~y~lh~~p~~-~~ 607 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKA--GDALEKLKL----LYKLHDPPAD-EL 607 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHh--hhHHHHHHH----HHhhccCCcc-cc
Confidence 4455555544443332233446789999999999999999999988877655 222222222 2677777766 55
Q ss_pred cHHHH
Q psy17871 161 SFAEF 165 (189)
Q Consensus 161 ~~~eF 165 (189)
+.++-
T Consensus 608 d~e~~ 612 (671)
T KOG4347|consen 608 DREEV 612 (671)
T ss_pred ccccc
Confidence 55443
No 118
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=91.16 E-value=0.15 Score=35.19 Aligned_cols=81 Identities=16% Similarity=0.293 Sum_probs=40.6
Q ss_pred CCCCCCCCCHHHHHHHHhhcCCCHHHHH-HHHHHHhhCCCCCCCCCCCccchhhhhcccccccCChHHHHHHHhcCCCCC
Q psy17871 1 MGQSESQFTEEELQDYEDLTYFTKKEIL-AHQKFKSLAPEKVGHNKNAKLPMTKILLYPQLRVNPFGDRICHIFSSSHDG 79 (189)
Q Consensus 1 mg~~~s~l~~~~~~~~~~~~~~~~~e~~-~~~~F~~~d~~~~~~~~~g~i~~~e~~~l~~~~~~~~~~~l~~~~d~~~~g 79 (189)
|...+..||+++..++++...+|...++ +.+.|. . +|.+.. + +..+
T Consensus 1 ~~~~~~~lsp~eF~qLq~y~eys~kklkdvl~eF~---~-------~g~~~~---------------------~--~~~~ 47 (138)
T PF14513_consen 1 MAKEWVSLSPEEFAQLQKYSEYSTKKLKDVLKEFH---G-------DGSLAK---------------------Y--NPEE 47 (138)
T ss_dssp -----S-S-HHHHHHHHHHHHH----HHHHHHHH----H-------TSGGGG---------------------G--EETT
T ss_pred CccceeccCHHHHHHHHHHHHHHHHHHHHHHHHHh---c-------CCcccc---------------------c--CCCC
Confidence 4456778999999999998888888777 666663 2 332211 0 1223
Q ss_pred CccHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCC
Q psy17871 80 DCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDG 114 (189)
Q Consensus 80 ~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~ 114 (189)
.|+|+.|..++.......-+++-.+..|..|-+..
T Consensus 48 ~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~~ 82 (138)
T PF14513_consen 48 PIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKKP 82 (138)
T ss_dssp EE-HHHHHHHHHHHTT-S--HHHHHHHHHHS----
T ss_pred CcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence 68888888877776554444446677777775443
No 119
>KOG0039|consensus
Probab=91.11 E-value=0.95 Score=39.49 Aligned_cols=93 Identities=17% Similarity=0.341 Sum_probs=70.0
Q ss_pred CCCccHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHHcCCC
Q psy17871 78 DGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTH--HLSDNDIQHLIQNILDEADLD 155 (189)
Q Consensus 78 ~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~--~~~~~e~~~~i~~~~~~~d~~ 155 (189)
++ +++++|. ... ...+.+++..|...|. ++|.++.+++..+++...... ......+..+...++...+.+
T Consensus 2 ~~-~~~~~~~-----~~~-~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (646)
T KOG0039|consen 2 EG-ISFQELK-----ITD-CSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPD 73 (646)
T ss_pred CC-cchhhhc-----ccC-CChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhcccc
Confidence 45 8888888 222 2334489999999998 999999999999987753311 333445566666679999999
Q ss_pred CCCcccHHHHHHHHHhChhHHhh
Q psy17871 156 DDGALSFAEFELFIEKSQDFAKW 178 (189)
Q Consensus 156 ~dg~I~~~eF~~~~~~~~~~~~~ 178 (189)
+.|.+.++++..++...|.....
T Consensus 74 ~~~y~~~~~~~~ll~~~~~~~~~ 96 (646)
T KOG0039|consen 74 HKGYITNEDLEILLLQIPTLLFA 96 (646)
T ss_pred ccceeeecchhHHHHhchHHHHH
Confidence 99999999999999988865544
No 120
>KOG0998|consensus
Probab=90.64 E-value=0.29 Score=43.88 Aligned_cols=138 Identities=24% Similarity=0.272 Sum_probs=98.0
Q ss_pred CCHHHHH-HHHHHHhhCCCCCCCCCCCccchhhhhc-cccccc-CChHHHHHHHhcCCCCCCccHHHHHHHHhhc---CC
Q psy17871 22 FTKKEIL-AHQKFKSLAPEKVGHNKNAKLPMTKILL-YPQLRV-NPFGDRICHIFSSSHDGDCTFEDFLDMMSVF---SE 95 (189)
Q Consensus 22 ~~~~e~~-~~~~F~~~d~~~~~~~~~g~i~~~e~~~-l~~~~~-~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~---~~ 95 (189)
++..+.. +..+|..+.+. .|.++-...+- +..-+. .....++..+-|.+.+|.+++.+|...+... ..
T Consensus 123 ~~~qe~aky~q~f~s~~p~------~g~~sg~~~~pil~~s~Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l~ 196 (847)
T KOG0998|consen 123 ITPQEQAKYDQIFRSLSPS------NGLLSGDKAKPILLNSKLPSDVLGRIWELSDIDKDGNLDRDEFAVAMHLINDLLN 196 (847)
T ss_pred CCHHHHHHHHHHHhccCCC------CCccccchhhhhhhcCCCChhhhccccccccccccCCCChhhhhhhhhHHHHHhh
Confidence 5566666 77778888876 67777777666 332222 2334466777777888999999987666431 11
Q ss_pred ---C----------------------------------------------------------------------------
Q psy17871 96 ---S---------------------------------------------------------------------------- 96 (189)
Q Consensus 96 ---~---------------------------------------------------------------------------- 96 (189)
.
T Consensus 197 ~~~~p~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~~~~ 276 (847)
T KOG0998|consen 197 GNSEPVPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSWSPK 276 (847)
T ss_pred cccCCCCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCccccccccccccccccccCcc
Confidence 0
Q ss_pred --CChhhHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCh
Q psy17871 97 --APKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQ 173 (189)
Q Consensus 97 --~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~ 173 (189)
.........+|...|.+.+|.|+..+....+.. . +++...+..+ ....+..+.|.+++.+|.-.+..+.
T Consensus 277 vsp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~--~--gl~~~~l~~~----w~l~d~~n~~~ls~~ef~~~~~~~~ 347 (847)
T KOG0998|consen 277 VSPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLP--F--GLSKPRLAHV----WLLADTQNTGTLSKDEFALAMHLLE 347 (847)
T ss_pred cChHHHHHHHHHHHhccccCCCccccccccccccc--C--CCChhhhhhh----hhhcchhccCcccccccchhhhhhh
Confidence 001124567899999999999999999988877 3 7888888887 5888999999999998887666444
No 121
>KOG0042|consensus
Probab=90.21 E-value=0.63 Score=39.39 Aligned_cols=65 Identities=17% Similarity=0.312 Sum_probs=56.8
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhC
Q psy17871 102 KAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKS 172 (189)
Q Consensus 102 ~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~ 172 (189)
..+.-|..+|.|+.|+++...+.++|...+. .++.+.+.++ +++++.+..|.+...+|..+++..
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~--~~d~~~~~~~----l~ea~~~~~g~v~l~e~~q~~s~~ 658 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSENV--GWDEDRLHEE----LQEADENLNGFVELREFLQLMSAI 658 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhcC--CCCHHHHHHH----HHHHHHhhcceeeHHHHHHHHHHH
Confidence 3456799999999999999999999999986 7999988887 688888889999999999988753
No 122
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=90.15 E-value=1.1 Score=27.77 Aligned_cols=63 Identities=16% Similarity=0.169 Sum_probs=42.1
Q ss_pred HHHHHHhcCCCCCCccHHHHHHHHhhcCCC-CChhhHHHHHHHHhcCC----CCCcccHHHHHHHHHHH
Q psy17871 67 DRICHIFSSSHDGDCTFEDFLDMMSVFSES-APKPVKAEHAFRIFDFD----GDDMLGMTDLKQIIDRL 130 (189)
Q Consensus 67 ~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~-~~~~~~l~~~F~~~D~~----~~G~I~~~el~~~l~~~ 130 (189)
..|+..+.. +.+.++.++|..++...... ......+..++..|.++ ..+.+|.+.|...|..-
T Consensus 3 ~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 3 EEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred HHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 345666644 56778888888888754332 22344777777777554 46889999998888543
No 123
>KOG0035|consensus
Probab=89.47 E-value=1.4 Score=39.49 Aligned_cols=71 Identities=11% Similarity=-0.009 Sum_probs=56.6
Q ss_pred hHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCh
Q psy17871 101 VKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSD-NDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQ 173 (189)
Q Consensus 101 ~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~-~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~ 173 (189)
.+++..|+.+|+...|..+.+++...|..+|. .... ++...-+..+....+.+..|++++.+|...+.+.-
T Consensus 747 ~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~--~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~ 818 (890)
T KOG0035|consen 747 DELRALENEQDKIDGGAASPEELLRCLMSLGY--NTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREY 818 (890)
T ss_pred HHHHHHHhHHHHhhcccCCHHHHHHHHHhcCc--ccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhh
Confidence 36889999999999999999999999999988 4443 44444444456677777789999999999888643
No 124
>KOG1707|consensus
Probab=89.15 E-value=0.72 Score=39.18 Aligned_cols=89 Identities=15% Similarity=0.169 Sum_probs=59.6
Q ss_pred cCCCHHHHH-HHHHHHhhCCCCCCCCCCCccchhhhhc-ccccccCChHHHHHH-HhcCCCCCCccHHHHHHHHhhcCCC
Q psy17871 20 TYFTKKEIL-AHQKFKSLAPEKVGHNKNAKLPMTKILL-YPQLRVNPFGDRICH-IFSSSHDGDCTFEDFLDMMSVFSES 96 (189)
Q Consensus 20 ~~~~~~e~~-~~~~F~~~d~~~~~~~~~g~i~~~e~~~-l~~~~~~~~~~~l~~-~~d~~~~g~i~~~ef~~~~~~~~~~ 96 (189)
..++..-+. +..+|.++|.++ ||.++..++.. +...+..++....+. ..-.+..|.+++.-|+..|+.....
T Consensus 307 ~ELs~~~~~Fl~~~f~~~D~d~-----Dg~L~p~El~~LF~~~P~~pW~~~~~~~~t~~~~~G~ltl~g~l~~WsL~Tll 381 (625)
T KOG1707|consen 307 VELSPKGYRFLVDVFEKFDRDN-----DGALSPEELKDLFSTAPGSPWTSSPYKDSTVKNERGWLTLNGFLSQWSLMTLL 381 (625)
T ss_pred eeccHHHHHHHHHHHHhccCCC-----CCCcCHHHHHHHhhhCCCCCCCCCcccccceecccceeehhhHHHHHHHHhhc
Confidence 357777788 999999999999 99999999999 766655553221111 1111467899999999999875543
Q ss_pred CChhhHHHHHHHHhcCC
Q psy17871 97 APKPVKAEHAFRIFDFD 113 (189)
Q Consensus 97 ~~~~~~l~~~F~~~D~~ 113 (189)
....---..+|--|..+
T Consensus 382 d~~~t~~~L~Ylgf~~~ 398 (625)
T KOG1707|consen 382 DPRRTLEYLAYLGFPTD 398 (625)
T ss_pred cHHHHHHHHHhcCCccc
Confidence 33321223445555554
No 125
>KOG0169|consensus
Probab=89.12 E-value=3.6 Score=36.08 Aligned_cols=65 Identities=18% Similarity=0.303 Sum_probs=44.0
Q ss_pred HHHHHHhcCCCCCCccHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCCCcccHHHHHHHHHHHhC
Q psy17871 67 DRICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTG 132 (189)
Q Consensus 67 ~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~ 132 (189)
..++...|++.+|.+++.+-..++..+...-... .++..|+..|..++|.+...++..+......
T Consensus 139 ~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~-~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~ 203 (746)
T KOG0169|consen 139 HSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSES-KARRLFKESDNSQTGKLEEEEFVKFRKELTK 203 (746)
T ss_pred HHHHHHHccccccccchhhHHHHHHHHHHhhhHH-HHHHHHHHHHhhccceehHHHHHHHHHhhcc
Confidence 3456667777888888888777666543322222 6777777777788888888887777666543
No 126
>KOG4578|consensus
Probab=88.80 E-value=0.34 Score=38.08 Aligned_cols=62 Identities=8% Similarity=0.181 Sum_probs=47.4
Q ss_pred HHHHhcCCCCCCccHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q psy17871 69 ICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRL 130 (189)
Q Consensus 69 l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~ 130 (189)
.|..+|.|.++.|+-.|+..+-..+..........+..|+.-|.|+|-.||..|++..|...
T Consensus 338 ~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 338 YFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred eeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 35667888888888777665555544444455578899999999999999999999888543
No 127
>KOG3555|consensus
Probab=88.56 E-value=2.3 Score=33.89 Aligned_cols=94 Identities=7% Similarity=-0.024 Sum_probs=65.9
Q ss_pred HHHHHHhhCCCCCCCCCCCccchhhhhc-cccccc------CChHHHHHHHhcCCCCCCccHHHHHHHHhhcCCCCChhh
Q psy17871 29 AHQKFKSLAPEKVGHNKNAKLPMTKILL-YPQLRV------NPFGDRICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPV 101 (189)
Q Consensus 29 ~~~~F~~~d~~~~~~~~~g~i~~~e~~~-l~~~~~------~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~ 101 (189)
++..|+.+-.+. ++......+.. -..+.. +.....+|..+|.|.++.++..|...+.... .+.
T Consensus 213 L~dWF~~lhe~s-----~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ldk-----nE~ 282 (434)
T KOG3555|consen 213 LRDWFKALHEDS-----SQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELDK-----NEA 282 (434)
T ss_pred HHHHHHHHHhhh-----hccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhccC-----chh
Confidence 788888776665 44444444433 111111 2234678999999999999999976655332 234
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhC
Q psy17871 102 KAEHAFRIFDFDGDDMLGMTDLKQIIDRLTG 132 (189)
Q Consensus 102 ~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~ 132 (189)
.++..|..-|...+|.|+.+|....+.....
T Consensus 283 CikpFfnsCD~~kDg~iS~~EWC~CF~k~~~ 313 (434)
T KOG3555|consen 283 CIKPFFNSCDTYKDGSISTNEWCYCFQKSDP 313 (434)
T ss_pred HHHHHHhhhcccccCccccchhhhhhccCCC
Confidence 8999999999999999999998877766543
No 128
>KOG1955|consensus
Probab=88.13 E-value=1.2 Score=37.09 Aligned_cols=67 Identities=12% Similarity=0.199 Sum_probs=53.2
Q ss_pred CCCHHHHH-HHHHHHhhCCCCCCCCCCCccchhhhhc-ccccccCC-hHHHHHHHhcCCCCCCccHHHHHHHHhh
Q psy17871 21 YFTKKEIL-AHQKFKSLAPEKVGHNKNAKLPMTKILL-YPQLRVNP-FGDRICHIFSSSHDGDCTFEDFLDMMSV 92 (189)
Q Consensus 21 ~~~~~e~~-~~~~F~~~d~~~~~~~~~g~i~~~e~~~-l~~~~~~~-~~~~l~~~~d~~~~g~i~~~ef~~~~~~ 92 (189)
.++++|.+ +-+.|+..-+|. .|.|+-.--++ +..-...+ ....|+++-|-++||-+++.||+..+..
T Consensus 224 ~IT~EQReYYvnQFrtvQpDp-----~gfisGsaAknFFtKSklpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 224 QITPEQREYYVNQFRTVQPDP-----HGFISGSAAKNFFTKSKLPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred ccCHHHHHHHHhhhhcccCCc-----ccccccHHHHhhhhhccCchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 47889999 888899999999 99999887777 54433332 2456888888899999999999998865
No 129
>KOG4286|consensus
Probab=88.01 E-value=4 Score=35.90 Aligned_cols=105 Identities=10% Similarity=0.138 Sum_probs=72.8
Q ss_pred HHHHHHhcCCCCCCccHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCCCcccHHHHHHHHH-------HHhCCC--CCC
Q psy17871 67 DRICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIID-------RLTGTH--HLS 137 (189)
Q Consensus 67 ~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~-------~~~~~~--~~~ 137 (189)
..+..+||...+|.|..-+|...+..++.....+ +++++|...-..++-.+ ...|..+|. .+|... +.+
T Consensus 473 N~llNvyD~~R~g~irvls~ki~~i~lck~~lee-k~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~aAfGgs 550 (966)
T KOG4286|consen 473 NWLLNVYDTGRTGRIRVLSFKIGIISLCKAHLED-KYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVAAFGGS 550 (966)
T ss_pred HHHHHhcccCCCcceEEeeehhhHHHHhcchhHH-HHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHHhhcCC
Confidence 4577889999999999999988888887755555 89999999977766554 445544443 333210 111
Q ss_pred --HHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhChhHHhhh
Q psy17871 138 --DNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQDFAKWT 179 (189)
Q Consensus 138 --~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~~~~~~~ 179 (189)
+.-++.+ |.. .++--.|.+..|..++...|.++-|+
T Consensus 551 NvepsvrsC----F~~--v~~~pei~~~~f~dw~~~epqsmVwL 588 (966)
T KOG4286|consen 551 NIEPSVRSC----FQF--VNNKPEIEAALFLDWMRLEPQSMVWL 588 (966)
T ss_pred CCChHHHHH----HHh--cCCCCcchHHHHHHHhccCcchhhHH
Confidence 2223444 663 34455799999999999999887773
No 130
>PLN02230 phosphoinositide phospholipase C 4
Probab=84.04 E-value=8.3 Score=33.37 Aligned_cols=73 Identities=11% Similarity=0.246 Sum_probs=52.2
Q ss_pred hhhHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHHcC---CCCCCcccHHHHHHHHHhC
Q psy17871 99 KPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGT-HHLSDNDIQHLIQNILDEAD---LDDDGALSFAEFELFIEKS 172 (189)
Q Consensus 99 ~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~-~~~~~~e~~~~i~~~~~~~d---~~~dg~I~~~eF~~~~~~~ 172 (189)
...++..+|..+-.+ ++.++.++|..+|+..... ...+.+++..++..+..... .-..+.++.+.|..++...
T Consensus 27 p~~ei~~lf~~~s~~-~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s~ 103 (598)
T PLN02230 27 PVADVRDLFEKYADG-DAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFST 103 (598)
T ss_pred CcHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcCc
Confidence 345899999999544 4899999999999987631 02467778888765544332 1234569999999988763
No 131
>PLN02223 phosphoinositide phospholipase C
Probab=83.62 E-value=8.3 Score=32.87 Aligned_cols=73 Identities=15% Similarity=0.101 Sum_probs=54.2
Q ss_pred hhhHHHHHHHHhcCCCCCcccHHHHHHHH---HHHhCCCCCCHHHHHHHHHHHHHHcC----CCCCCcccHHHHHHHHHh
Q psy17871 99 KPVKAEHAFRIFDFDGDDMLGMTDLKQII---DRLTGTHHLSDNDIQHLIQNILDEAD----LDDDGALSFAEFELFIEK 171 (189)
Q Consensus 99 ~~~~l~~~F~~~D~~~~G~I~~~el~~~l---~~~~~~~~~~~~e~~~~i~~~~~~~d----~~~dg~I~~~eF~~~~~~ 171 (189)
..+.++.+|..+ ..+.|.++.+.+.++| .........+.++++.+++.++.... ....+.++.+.|..++.+
T Consensus 14 ~p~~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 14 QPDLILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred CcHHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 345889999999 4778999999999999 44433226788889999877665442 223367999999999986
Q ss_pred C
Q psy17871 172 S 172 (189)
Q Consensus 172 ~ 172 (189)
.
T Consensus 93 ~ 93 (537)
T PLN02223 93 T 93 (537)
T ss_pred c
Confidence 3
No 132
>PLN02228 Phosphoinositide phospholipase C
Probab=83.29 E-value=6.8 Score=33.68 Aligned_cols=68 Identities=13% Similarity=0.352 Sum_probs=48.6
Q ss_pred hhhHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCC----CCCCcccHHHHHHHHHhC
Q psy17871 99 KPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADL----DDDGALSFAEFELFIEKS 172 (189)
Q Consensus 99 ~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~----~~dg~I~~~eF~~~~~~~ 172 (189)
...++..+|..+-. ++.++.++|..+|+........+.+.+..++ ..+.. ...|.++.+.|..++...
T Consensus 22 ~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~----~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 22 PPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIF----HSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred CcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHH----HHhccchhhcccCccCHHHHHHHhcCc
Confidence 34488999999864 3689999999999887653134556677774 44332 234679999999999754
No 133
>KOG1264|consensus
Probab=83.20 E-value=7.8 Score=34.71 Aligned_cols=145 Identities=14% Similarity=0.196 Sum_probs=86.4
Q ss_pred cCCCHHHHH--HHHHHHhhCCCCCCCCCCCccchhhhhc-ccccccCChHH-HHHHHhcC--CCCCCccHHHHHHHHhhc
Q psy17871 20 TYFTKKEIL--AHQKFKSLAPEKVGHNKNAKLPMTKILL-YPQLRVNPFGD-RICHIFSS--SHDGDCTFEDFLDMMSVF 93 (189)
Q Consensus 20 ~~~~~~e~~--~~~~F~~~d~~~~~~~~~g~i~~~e~~~-l~~~~~~~~~~-~l~~~~d~--~~~g~i~~~ef~~~~~~~ 93 (189)
..+++.+|. +++.+...|... ...|+..+++. |....+..+.. .+.+.+-. -+.+.++|.+|..++..+
T Consensus 135 ~a~~p~qI~~wlrk~~ysvd~~~-----~~~isard~k~~l~qvn~k~~~~kfl~e~~ted~~~k~dlsf~~f~~ly~~l 209 (1267)
T KOG1264|consen 135 NAPTPLQIERWLRKQIYSVDQTR-----ENSISARDLKTILPQVNFKVSSAKFLKEKFTEDGARKDDLSFEQFHLLYKKL 209 (1267)
T ss_pred cCCChHHHHHHHHhhheeccchh-----hhheeHHhhhcccccceEEechHHHHHHHHhHhhhccccccHHHHHHHHHHH
Confidence 357888888 788888888766 66899999999 88777766543 33344322 345789999999988875
Q ss_pred CCCCChhhHHH--H--HHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHHHcCCC-CCCcccHHHH
Q psy17871 94 SESAPKPVKAE--H--AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDND---IQHLIQNILDEADLD-DDGALSFAEF 165 (189)
Q Consensus 94 ~~~~~~~~~l~--~--~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e---~~~~i~~~~~~~d~~-~dg~I~~~eF 165 (189)
+-.......+. . +...-+.-.--.|+..||.++|..-.. .....+ +...+..+.+..-.+ ..-.+.+.||
T Consensus 210 mfs~~~a~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~--e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EF 287 (1267)
T KOG1264|consen 210 MFSQQKAILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHEQQ--EHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEF 287 (1267)
T ss_pred hhccchhhhhcccchhhhcCCCCccceEeeHHHHHHHHHhhhH--HHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHH
Confidence 54333221111 1 111112222357999999999976443 222222 233322222222111 2346899999
Q ss_pred HHHHHh
Q psy17871 166 ELFIEK 171 (189)
Q Consensus 166 ~~~~~~ 171 (189)
+.++-+
T Consensus 288 v~fLFS 293 (1267)
T KOG1264|consen 288 VTFLFS 293 (1267)
T ss_pred HHHHhh
Confidence 997653
No 134
>KOG0042|consensus
Probab=82.63 E-value=1.3 Score=37.59 Aligned_cols=70 Identities=19% Similarity=0.245 Sum_probs=49.9
Q ss_pred CCCHHHHH-HHHHHHhhCCCCCCCCCCCccchhhhhc-ccccccCChH---HHHHHHhcCCCCCCccHHHHHHHHhhcCC
Q psy17871 21 YFTKKEIL-AHQKFKSLAPEKVGHNKNAKLPMTKILL-YPQLRVNPFG---DRICHIFSSSHDGDCTFEDFLDMMSVFSE 95 (189)
Q Consensus 21 ~~~~~e~~-~~~~F~~~d~~~~~~~~~g~i~~~e~~~-l~~~~~~~~~---~~l~~~~d~~~~g~i~~~ef~~~~~~~~~ 95 (189)
.++++++. .+..|..+|.++ .|+++..++.. |...+.++.. +++.+-.+.+.+|.+...+|.++++....
T Consensus 586 ~~~~~~~~~~~~rf~~lD~~k-----~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~ 660 (680)
T KOG0042|consen 586 KLTPEDFLRRKTRFAFLDADK-----KAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKN 660 (680)
T ss_pred ccCHHHHHHHHHHHHhhcchH-----HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhc
Confidence 57788888 888888888887 88888888888 7766645443 33444445566788888888888776543
No 135
>PLN02222 phosphoinositide phospholipase C 2
Probab=81.32 E-value=8.4 Score=33.25 Aligned_cols=67 Identities=12% Similarity=0.238 Sum_probs=49.9
Q ss_pred hHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhC
Q psy17871 101 VKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKS 172 (189)
Q Consensus 101 ~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~ 172 (189)
.++..+|..+-. ++.++.++|..+|+........+.+.+..+|+.. . .....+.++++.|..++...
T Consensus 25 ~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~-~--~~~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 25 REIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSA-S--SLLHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred HHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhh-h--hhhhccCcCHHHHHHHhcCC
Confidence 388999999864 4799999999999987653145778888886542 1 11235679999999999863
No 136
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=79.58 E-value=1.8 Score=21.84 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=24.9
Q ss_pred CCcccHHHHHHHHHhChhHHhhhhhhhhhh
Q psy17871 157 DGALSFAEFELFIEKSQDFAKWTSIQREYI 186 (189)
Q Consensus 157 dg~I~~~eF~~~~~~~~~~~~~~~~~~~~~ 186 (189)
.|+|+++++..+..+--.|.+..+-.++|.
T Consensus 2 ~~~i~~~~~~d~a~rv~~f~~~ngRlPnyV 31 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVNNFYESNGRLPNYV 31 (33)
T ss_pred CceecHHHHHHHHHHHHHHHHHcCCCCCee
Confidence 578999999999999888888877776664
No 137
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=78.15 E-value=17 Score=25.33 Aligned_cols=63 Identities=13% Similarity=0.255 Sum_probs=41.7
Q ss_pred CCCCcccHHHHHHHHHHH-h---------CCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhChhHHhh
Q psy17871 113 DGDDMLGMTDLKQIIDRL-T---------GTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQDFAKW 178 (189)
Q Consensus 113 ~~~G~I~~~el~~~l~~~-~---------~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~~~~~~ 178 (189)
+.+|.|+...|..+|+.- | .++.++.+++..++..+.+.+..++ ++=|+|-..+.+.|.++..
T Consensus 95 ~~n~~i~~~~ff~~lQ~~lGdWIT~~~Lkh~n~MSk~Qik~L~~~Ii~~akae~---~dtE~Ye~vwkKmPaY~~n 167 (175)
T PF04876_consen 95 STNGLIDIGKFFDILQPKLGDWITKNFLKHPNRMSKDQIKTLCEQIIEMAKAES---SDTEHYEKVWKKMPAYFSN 167 (175)
T ss_pred CcccceeHHHHHHHHHHHhhhHHHHHHHhccchhhHHHHHHHHHHHHHHHhccC---CchHHHHHHHHHhhHHHHH
Confidence 345666666666666542 1 1126888888888777777765443 6667888999999988644
No 138
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=76.28 E-value=20 Score=24.37 Aligned_cols=29 Identities=10% Similarity=0.173 Sum_probs=21.2
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q psy17871 102 KAEHAFRIFDFDGDDMLGMTDLKQIIDRL 130 (189)
Q Consensus 102 ~l~~~F~~~D~~~~G~I~~~el~~~l~~~ 130 (189)
.+......||++++|.|+.-.++..|-.+
T Consensus 98 ~ln~Ll~vyD~~rtG~I~vls~KvaL~~L 126 (127)
T PF09068_consen 98 LLNWLLNVYDSQRTGKIRVLSFKVALITL 126 (127)
T ss_dssp HHHHHHHHH-TT--SEEEHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCCeeehhHHHHHHHHh
Confidence 45678899999999999999998877543
No 139
>KOG1029|consensus
Probab=73.42 E-value=6.3 Score=34.96 Aligned_cols=59 Identities=17% Similarity=0.164 Sum_probs=45.8
Q ss_pred HHHHHHhhCCCCCCCCCCCccchhhhhc-ccccccC-ChHHHHHHHhcCCCCCCccHHHHHHHHhh
Q psy17871 29 AHQKFKSLAPEKVGHNKNAKLPMTKILL-YPQLRVN-PFGDRICHIFSSSHDGDCTFEDFLDMMSV 92 (189)
Q Consensus 29 ~~~~F~~~d~~~~~~~~~g~i~~~e~~~-l~~~~~~-~~~~~l~~~~d~~~~g~i~~~ef~~~~~~ 92 (189)
+..+|+.+|+.. .|+++-.+-+. |..-++. .....|..+-|-|+||.++-+||+-.+..
T Consensus 197 Y~QlFNa~Dktr-----sG~Lsg~qaR~aL~qS~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 197 YRQLFNALDKTR-----SGYLSGQQARSALGQSGLPQNQLAHIWTLSDVDGDGKLSADEFILAMHL 257 (1118)
T ss_pred HHHHhhhccccc-----ccccccHHHHHHHHhcCCchhhHhhheeeeccCCCCcccHHHHHHHHHH
Confidence 889999999999 99999888877 5544433 23456667777899999999999876643
No 140
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=72.89 E-value=3.9 Score=26.41 Aligned_cols=61 Identities=11% Similarity=0.178 Sum_probs=36.2
Q ss_pred HHH-HHHHHHhhCCCCCCCCCCCccchhhhhc-ccccccCChHHHHHHHhcC---CCCCCccHHHHHHHHhhc
Q psy17871 26 EIL-AHQKFKSLAPEKVGHNKNAKLPMTKILL-YPQLRVNPFGDRICHIFSS---SHDGDCTFEDFLDMMSVF 93 (189)
Q Consensus 26 e~~-~~~~F~~~d~~~~~~~~~g~i~~~e~~~-l~~~~~~~~~~~l~~~~d~---~~~g~i~~~ef~~~~~~~ 93 (189)
.+. +.+.|.++..+ |.++.+.|.. +..........+||..+.. -....|+.+|...++..+
T Consensus 28 ~W~~VE~RFd~La~d-------G~L~rs~Fg~CIGM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 28 GWKEVEKRFDKLAKD-------GLLPRSDFGECIGMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp -HHHHHHHHHHH-BT-------TBEEGGGHHHHHT--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCcC-------CcccHHHHHHhcCCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 466 88889888864 4999999988 5533333445566665433 123567777777777554
No 141
>KOG3866|consensus
Probab=71.33 E-value=12 Score=29.54 Aligned_cols=23 Identities=13% Similarity=0.317 Sum_probs=13.4
Q ss_pred HHHHHhcCCCCCcccHHHHHHHH
Q psy17871 105 HAFRIFDFDGDDMLGMTDLKQII 127 (189)
Q Consensus 105 ~~F~~~D~~~~G~I~~~el~~~l 127 (189)
.+.+..|.|.+..||.+||...-
T Consensus 300 HVMk~vDtNqDRlvtleEFL~~t 322 (442)
T KOG3866|consen 300 HVMKQVDTNQDRLVTLEEFLNDT 322 (442)
T ss_pred HHHHhcccchhhhhhHHHHHhhh
Confidence 34555666666666666665433
No 142
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=69.55 E-value=4.6 Score=26.91 Aligned_cols=33 Identities=24% Similarity=0.434 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHh
Q psy17871 135 HLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEK 171 (189)
Q Consensus 135 ~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~ 171 (189)
.+++++.+.+ ..++..|..|.+.|.+|+.-+..
T Consensus 3 iLtDeQFdrL----W~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 3 ILTDEQFDRL----WNEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp ---HHHHHHH----HTTS-B-TTS-EEHHHHHHHT--
T ss_pred cccHHHhhhh----hhhCcCCccCCEeHHHHHHHccc
Confidence 4789999998 48899999999999999986653
No 143
>KOG2871|consensus
Probab=68.22 E-value=4.7 Score=32.50 Aligned_cols=63 Identities=14% Similarity=0.304 Sum_probs=42.7
Q ss_pred hhhHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHH
Q psy17871 99 KPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFE 166 (189)
Q Consensus 99 ~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~ 166 (189)
..+.++.+|+.+|+.++|+|+-+-++.++..... .+++...-.+ +-..+++..-|-|-.++|.
T Consensus 307 ~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~--~vse~a~v~l---~~~~l~pE~~~iil~~d~l 369 (449)
T KOG2871|consen 307 PSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNR--LVSEPAYVML---MRQPLDPESLGIILLEDFL 369 (449)
T ss_pred CCHHHHhhhhccCccCCCeeecHHHHHHHHHhcc--cccCHHHHHH---hcCccChhhcceEEecccc
Confidence 3458999999999999999999999999988764 4554433222 1233455555555554443
No 144
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=67.16 E-value=23 Score=20.65 Aligned_cols=51 Identities=16% Similarity=0.292 Sum_probs=34.9
Q ss_pred CcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhChhHHh
Q psy17871 116 DMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQDFAK 177 (189)
Q Consensus 116 G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~~~~~ 177 (189)
-.+|.+|+..++..++. ..+..++..++..+. .+....|..+......+++
T Consensus 8 ~~lTeEEl~~~i~~L~~--~~~~~dm~~IW~~v~---------~~er~k~~~M~~~L~~y~~ 58 (61)
T TIGR01639 8 KKLSKEELNELINSLDE--IPNRNDMLIIWNQVH---------GIERDKFVDMQENLKEYIQ 58 (61)
T ss_pred HHccHHHHHHHHHhhcC--CCCHHHHHHHHHHHH---------HHHHHhHHHHHHHHHHHHH
Confidence 45888999999999888 788888877764433 2444556666665555443
No 145
>KOG2557|consensus
Probab=66.16 E-value=47 Score=26.99 Aligned_cols=51 Identities=18% Similarity=0.343 Sum_probs=39.5
Q ss_pred CccHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCCCcccHHHHHHHHHHHh
Q psy17871 80 DCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLT 131 (189)
Q Consensus 80 ~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~ 131 (189)
.++++.++............ +....++...|.+++|......+.+.+....
T Consensus 74 ~~~l~k~~~~~~~~~~gt~d-q~a~mL~~~~~~sgn~~~~~~q~eQ~~~~vl 124 (427)
T KOG2557|consen 74 KMTLEKLVIAKATYEKGTDD-QIAEMLYQTLDVNGNGVLSRSQLEQFLVVVL 124 (427)
T ss_pred cchHHHHhhHHhhhccCccc-HHHHHHHHHHhhccccccchhHHHHHHHHHh
Confidence 58888877666554433333 3778999999999999999999999998753
No 146
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.20 E-value=25 Score=24.39 Aligned_cols=63 Identities=11% Similarity=0.255 Sum_probs=43.6
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCh
Q psy17871 105 HAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQ 173 (189)
Q Consensus 105 ~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~ 173 (189)
.+|++...| |.++..|...+...+....+++.+++..++ .....-+...|++-.|...++++=
T Consensus 34 Llf~Vm~AD--G~v~~~E~~a~r~il~~~f~i~~~~l~ali----~~~e~~~~Ea~d~y~fts~l~r~L 96 (148)
T COG4103 34 LLFHVMEAD--GTVSESEREAFRAILKENFGIDGEELDALI----EAGEEAGYEAIDLYSFTSVLKRHL 96 (148)
T ss_pred HHHHHHhcc--cCcCHHHHHHHHHHHHHHcCCCHHHHHHHH----HHHHHhhHHHHHHHHHHHHHHHhc
Confidence 678888765 668888877666554333378999998885 444333455788888888877543
No 147
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=60.45 E-value=15 Score=16.46 Aligned_cols=16 Identities=31% Similarity=0.571 Sum_probs=9.6
Q ss_pred cCCCCCcccHHHHHHH
Q psy17871 111 DFDGDDMLGMTDLKQI 126 (189)
Q Consensus 111 D~~~~G~I~~~el~~~ 126 (189)
|.|++|.|+.-++.-+
T Consensus 1 DvN~DG~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALL 16 (21)
T ss_dssp -TTSSSSSSHHHHHHH
T ss_pred CCCCCCcCCHHHHHHH
Confidence 5567777776665543
No 148
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=60.05 E-value=18 Score=23.16 Aligned_cols=54 Identities=20% Similarity=0.249 Sum_probs=33.1
Q ss_pred CCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHh
Q psy17871 114 GDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEK 171 (189)
Q Consensus 114 ~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~ 171 (189)
-||.++..|...+-..+....++++.+...++ ...........++.+|.+.+..
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELL----AEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHH----HHHHHHHHhCCCHHHHHHHHHH
Confidence 36888888877776654432257777777764 3332222334677778776654
No 149
>KOG4301|consensus
Probab=58.39 E-value=23 Score=28.36 Aligned_cols=101 Identities=9% Similarity=0.101 Sum_probs=64.5
Q ss_pred HHHHhcCCCCCCccHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCC---------CCCCHH
Q psy17871 69 ICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGT---------HHLSDN 139 (189)
Q Consensus 69 l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~---------~~~~~~ 139 (189)
+.+.+|..+.|.++.-.....+...+.+.-.. +++.+|.... |++|.+..-.+.+++...... .+.++.
T Consensus 115 lLaA~ds~~~g~~~vfavkialatlc~gk~~d-klryIfs~is-ds~gim~~i~~~~fl~evlslpT~v~e~psfg~te~ 192 (434)
T KOG4301|consen 115 LLAAEDSEGQGKQQVFAVKIALATLCGGKIKD-KLRYIFSLIS-DSRGIMQEIQRDQFLHEVLSLPTAVFEGPSFGYTEL 192 (434)
T ss_pred HHhhcCccCCCCceeecchhhhhhhccchHHH-HHHHHHHHHc-cchHHHHHHHHHHHHHHHHcCCchhhcCCCcchHHH
Confidence 34446777778777666555666666544444 8999999994 678888888888888776441 022333
Q ss_pred HHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhChh--HHhhhh
Q psy17871 140 DIQHLIQNILDEADLDDDGALSFAEFELFIEKSQD--FAKWTS 180 (189)
Q Consensus 140 e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~~--~~~~~~ 180 (189)
-++.+ .-.+.+++.+.|...+...|. -+.|..
T Consensus 193 ~a~~c---------f~qqrKv~Ln~fldtl~sdp~p~cl~wlp 226 (434)
T KOG4301|consen 193 SARLC---------FLQQRKVELNQFLDTLMSDPPPQCLVWLP 226 (434)
T ss_pred HHHHH---------HHHHHHHHHHHHHHHHhcCCCchhHHHHH
Confidence 33333 234567999999997775443 344443
No 150
>KOG4004|consensus
Probab=58.34 E-value=4.7 Score=29.60 Aligned_cols=48 Identities=21% Similarity=0.378 Sum_probs=32.5
Q ss_pred CCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHH
Q psy17871 114 GDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFI 169 (189)
Q Consensus 114 ~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~ 169 (189)
.+|++|-.||.-+- .+ -++ ++..+..+|.-.|.|+||.|+.++|-.++
T Consensus 201 ~d~~~sh~el~pl~----ap-~ip---me~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 201 IDGYLSHTELAPLR----AP-LIP---MEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred cccccccccccccc----CC-ccc---HHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 46777776665221 10 112 24556667999999999999999998764
No 151
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=57.99 E-value=37 Score=22.33 Aligned_cols=22 Identities=36% Similarity=0.418 Sum_probs=10.4
Q ss_pred HHHhcCCCCCcccHHHHHHHHH
Q psy17871 107 FRIFDFDGDDMLGMTDLKQIID 128 (189)
Q Consensus 107 F~~~D~~~~G~I~~~el~~~l~ 128 (189)
|++.|.....-||..=|.+++-
T Consensus 35 f~V~DakTgeDiT~~iL~QII~ 56 (107)
T TIGR01848 35 FQVVDSKSGDDLTRSILLQIIA 56 (107)
T ss_pred EEEEECCCCchhHHHHHHHHHH
Confidence 4444544444455554444443
No 152
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=57.48 E-value=8.7 Score=22.67 Aligned_cols=22 Identities=18% Similarity=0.572 Sum_probs=20.0
Q ss_pred HHhcCCCCCcccHHHHHHHHHH
Q psy17871 108 RIFDFDGDDMLGMTDLKQIIDR 129 (189)
Q Consensus 108 ~~~D~~~~G~I~~~el~~~l~~ 129 (189)
++||+..+.+|+.+++.++++.
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 5689999999999999999976
No 153
>KOG4403|consensus
Probab=57.03 E-value=29 Score=28.78 Aligned_cols=26 Identities=12% Similarity=0.240 Sum_probs=12.0
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHH
Q psy17871 103 AEHAFRIFDFDGDDMLGMTDLKQIID 128 (189)
Q Consensus 103 l~~~F~~~D~~~~G~I~~~el~~~l~ 128 (189)
++.+-+.+|.|.+|.|+.+|--.+|+
T Consensus 70 ir~iHrqmDDD~nG~Id~~ESdeFlr 95 (575)
T KOG4403|consen 70 IRDIHRQMDDDHNGSIDVEESDEFLR 95 (575)
T ss_pred HHHHHHhcccccCCCcccccchHHHH
Confidence 44444444444444444444444443
No 154
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=55.46 E-value=20 Score=24.43 Aligned_cols=64 Identities=16% Similarity=0.168 Sum_probs=37.8
Q ss_pred HHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhChhHHh
Q psy17871 108 RIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQDFAK 177 (189)
Q Consensus 108 ~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~~~~~ 177 (189)
...|-.. ..++.+||..++...+. +. +.+-.--...++....+. ..++-++.+.++..+|.++.
T Consensus 28 ~~~d~~~-~~~s~~eL~~~l~~~~~--~~--~~lin~~~~~~k~L~~~~-~~ls~~e~i~ll~~~P~Lik 91 (132)
T PRK13344 28 KEQNLGK-EPLTKEEILAILTKTEN--GI--ESIVSSKNRYAKALDCDI-EELSVNEVIDLIQENPRILK 91 (132)
T ss_pred EEEECCC-CCCCHHHHHHHHHHhCC--CH--HHhhccCcHHHHhCCcch-hcCCHHHHHHHHHhCcccee
Confidence 3344433 35889999999988754 21 111000111244444333 45888999999999998754
No 155
>cd07978 TAF13 The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Several hy
Probab=55.17 E-value=53 Score=20.95 Aligned_cols=57 Identities=11% Similarity=0.268 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhCCC-CCCH--HHHHH--------HHHHHHHHcCCCCCCcccHHHHHHHHHhChhHHh
Q psy17871 120 MTDLKQIIDRLTGTH-HLSD--NDIQH--------LIQNILDEADLDDDGALSFAEFELFIEKSQDFAK 177 (189)
Q Consensus 120 ~~el~~~l~~~~~~~-~~~~--~e~~~--------~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~~~~~ 177 (189)
..|+.+++...|... ++++ .-+++ +..++...+. ...++++.++|.-++++.|.-+.
T Consensus 5 ~~ei~~mmy~~GD~~~P~~eTv~llE~iv~~~i~~l~~~a~~~A~-~r~~k~~~eD~~FliR~D~~Kl~ 72 (92)
T cd07978 5 TKEIRQMMYGFGDVQNPLPETVDLLEDIVVEYIIELCHKAAEVAQ-RRRGKVKVEDLIFLLRKDPKKLA 72 (92)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCHHHHHHHHhcCHHHHH
Confidence 367888888877642 2211 11122 2222222222 46788999999999999886443
No 156
>KOG3449|consensus
Probab=54.60 E-value=60 Score=21.45 Aligned_cols=41 Identities=17% Similarity=0.369 Sum_probs=34.6
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHH
Q psy17871 103 AEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLI 145 (189)
Q Consensus 103 l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i 145 (189)
+..+|-+++.-++...+..+++.+|..+|. ..+++-++.++
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~--E~d~e~i~~vi 43 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGA--EIDDERINLVL 43 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCc--ccCHHHHHHHH
Confidence 456778888888888999999999999999 88888888774
No 157
>KOG2243|consensus
Probab=54.35 E-value=19 Score=34.69 Aligned_cols=54 Identities=15% Similarity=0.250 Sum_probs=37.5
Q ss_pred HHHHhhCCCCCCCCCCCccchhhhhc-ccccccCChHHHH---HHHhcCCCCCCccHHHHHHHH
Q psy17871 31 QKFKSLAPEKVGHNKNAKLPMTKILL-YPQLRVNPFGDRI---CHIFSSSHDGDCTFEDFLDMM 90 (189)
Q Consensus 31 ~~F~~~d~~~~~~~~~g~i~~~e~~~-l~~~~~~~~~~~l---~~~~d~~~~g~i~~~ef~~~~ 90 (189)
..|+.+|+++ .|.|+..+|.. +..-. ..+..++ ......+.+..++|++|+.-+
T Consensus 4061 dtfkeydpdg-----kgiiskkdf~kame~~k-~ytqse~dfllscae~dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4061 DTFKEYDPDG-----KGIISKKDFHKAMEGHK-HYTQSEIDFLLSCAEADENDMFDYEDFVDRF 4118 (5019)
T ss_pred ccchhcCCCC-----CccccHHHHHHHHhccc-cchhHHHHHHHHhhccCccccccHHHHHHHh
Confidence 4578899999 99999999998 65332 2333333 223344667789999998765
No 158
>PF04783 DUF630: Protein of unknown function (DUF630); InterPro: IPR006868 This region is sometimes found at the N terminus of putative plant bZIP proteins IPR006867 from INTERPRO. The function of this conserved region is not known.
Probab=52.90 E-value=11 Score=22.07 Aligned_cols=17 Identities=35% Similarity=0.448 Sum_probs=12.7
Q ss_pred CCCCCCCCCHHHHHHHH
Q psy17871 1 MGQSESQFTEEELQDYE 17 (189)
Q Consensus 1 mg~~~s~l~~~~~~~~~ 17 (189)
||++.|++.+++.-.+.
T Consensus 1 MGC~~SK~d~eeaV~~C 17 (60)
T PF04783_consen 1 MGCSQSKLDDEEAVSLC 17 (60)
T ss_pred CCCCcccccCcHHHHHH
Confidence 99999999976544433
No 159
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=52.50 E-value=37 Score=21.79 Aligned_cols=58 Identities=17% Similarity=0.150 Sum_probs=35.8
Q ss_pred CcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhChhHHh
Q psy17871 116 DMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQDFAK 177 (189)
Q Consensus 116 G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~~~~~ 177 (189)
...+.+++..++...+. + .+++-.--...++.........++-++++.++..+|.++.
T Consensus 34 ~~~~~~~l~~~~~~~~~--~--~~~li~~~~~~~~~l~~~~~~~ls~~e~~~~l~~~p~Lik 91 (105)
T cd02977 34 EPPTKEELKELLAKLGL--G--VEDLFNTRGTPYRKLGLADKDELSDEEALELMAEHPKLIK 91 (105)
T ss_pred CCCCHHHHHHHHHhcCC--C--HHHHHhcCCchHHHcCCccccCCCHHHHHHHHHhCcCeee
Confidence 45778888888877653 2 1111110001245554443456999999999999998754
No 160
>PRK12559 transcriptional regulator Spx; Provisional
Probab=52.45 E-value=21 Score=24.32 Aligned_cols=57 Identities=16% Similarity=0.237 Sum_probs=35.2
Q ss_pred CcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhChhHHh
Q psy17871 116 DMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQDFAK 177 (189)
Q Consensus 116 G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~~~~~ 177 (189)
..++.+|+..++...+. + ..++-+--...++....+. ..++-++.+.++..+|.+++
T Consensus 35 ~~~s~~el~~~l~~~~~--g--~~~lin~~~~~~k~l~~~~-~~ls~~e~i~ll~~~P~Lik 91 (131)
T PRK12559 35 NSMTVDELKSILRLTEE--G--ATEIISTRSKTFQDLNINI-EELSLNEFYKLIIEHPLMLR 91 (131)
T ss_pred CcCCHHHHHHHHHHcCC--C--HHHHHhcCcHHHHhCCCCc-ccCCHHHHHHHHHhCcceEe
Confidence 35888899988887644 3 1122111111245555544 34788889999999888754
No 161
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=52.09 E-value=18 Score=21.85 Aligned_cols=50 Identities=8% Similarity=0.094 Sum_probs=35.1
Q ss_pred CCccHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCCCcccHHHHHHHHHHHhC
Q psy17871 79 GDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTG 132 (189)
Q Consensus 79 g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~ 132 (189)
-.++|...+..+..... . ..+..+...|+.=..+.|+++||.+.++...+
T Consensus 7 p~~~F~~L~~~l~~~l~---~-~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVG 56 (70)
T PF12174_consen 7 PWMPFPMLFSALSKHLP---P-SKMDLLQKHYEEFKKKKISREEFVRKLRQIVG 56 (70)
T ss_pred CcccHHHHHHHHHHHCC---H-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 35677777666666443 2 25666666666667889999999999988644
No 162
>PRK10026 arsenate reductase; Provisional
Probab=51.85 E-value=34 Score=23.77 Aligned_cols=58 Identities=12% Similarity=0.068 Sum_probs=37.1
Q ss_pred CcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhChhHHhh
Q psy17871 116 DMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQDFAKW 178 (189)
Q Consensus 116 G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~~~~~~ 178 (189)
..+|.+||..++..++. +..++-+=-...++.+..+.+ .++.++.+.++..+|.+++.
T Consensus 37 ~ppt~~eL~~~l~~~g~----~~~~lint~~~~yr~L~~~~~-~ls~~e~l~ll~~~P~LIKR 94 (141)
T PRK10026 37 TPPTRDELVKLIADMGI----SVRALLRKNVEPYEELGLAED-KFTDDQLIDFMLQHPILINR 94 (141)
T ss_pred CCcCHHHHHHHHHhCCC----CHHHHHHcCCchHHHcCCCcc-CCCHHHHHHHHHhCccceeC
Confidence 35888999999987643 222221111112566555443 48999999999999987643
No 163
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=51.56 E-value=44 Score=21.91 Aligned_cols=58 Identities=16% Similarity=0.106 Sum_probs=36.7
Q ss_pred CcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhChhHHhh
Q psy17871 116 DMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQDFAKW 178 (189)
Q Consensus 116 G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~~~~~~ 178 (189)
-.+|.+|+..++..++. +. +++-+--...++....+. ..++-++++.++..+|.++..
T Consensus 34 ~~~t~~el~~~l~~~~~--~~--~~lin~~~~~y~~l~~~~-~~ls~~e~i~ll~~~P~LikR 91 (112)
T cd03034 34 TPPTAAELRELLAKLGI--SP--RDLLRTKEAPYKELGLAD-PELSDEELIDAMAAHPILIER 91 (112)
T ss_pred CCcCHHHHHHHHHHcCC--CH--HHHHhcCCchHHHcCCCc-cCCCHHHHHHHHHhCcCcccC
Confidence 35899999999988764 32 111111011244444443 468999999999999988653
No 164
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=49.93 E-value=1.2e+02 Score=23.49 Aligned_cols=99 Identities=9% Similarity=0.057 Sum_probs=59.8
Q ss_pred CCccchhhhhc----ccccccCCh-HHHHHHHhcCCCCCCccHHHHHHHHhhcCCCCChh--hHHHHHHHHhcCCCCCcc
Q psy17871 46 NAKLPMTKILL----YPQLRVNPF-GDRICHIFSSSHDGDCTFEDFLDMMSVFSESAPKP--VKAEHAFRIFDFDGDDML 118 (189)
Q Consensus 46 ~g~i~~~e~~~----l~~~~~~~~-~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~--~~l~~~F~~~D~~~~G~I 118 (189)
||.++..|+.. +..++.... .....+++........++.+|+..+...+...... .-+...|++-=. ||.+
T Consensus 69 DG~Vse~Ei~~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~~~~~r~~l~~~lL~~l~~vA~A--DG~l 146 (267)
T PRK09430 69 KGRVTEADIRIASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRSVCGGRFDLLRMFLEIQIQAAFA--DGSL 146 (267)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh--cCCC
Confidence 78999998875 333444332 23366777666666689999999887655321111 012444555433 4779
Q ss_pred cHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q psy17871 119 GMTDLKQIIDRLTGTHHLSDNDIQHLIQN 147 (189)
Q Consensus 119 ~~~el~~~l~~~~~~~~~~~~e~~~~i~~ 147 (189)
+..|-.-+.+....- +++..+...+...
T Consensus 147 ~~~E~~~L~~Ia~~L-gis~~df~~~~~~ 174 (267)
T PRK09430 147 HPNERQVLYVIAEEL-GFSRFQFDQLLRM 174 (267)
T ss_pred CHHHHHHHHHHHHHc-CCCHHHHHHHHHH
Confidence 999855444443332 7788777776544
No 165
>PLN02952 phosphoinositide phospholipase C
Probab=47.42 E-value=75 Score=27.78 Aligned_cols=55 Identities=9% Similarity=0.157 Sum_probs=39.3
Q ss_pred CCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCh
Q psy17871 114 GDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQ 173 (189)
Q Consensus 114 ~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~ 173 (189)
+.|.++.+++..+.+.+-........++..+ |..+..++ +.++.++|..++....
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~l----f~~~~~~~-~~mt~~~l~~FL~~~Q 67 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDV----FCKFSVGG-GHMGADQLRRFLVLHQ 67 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHH----HHHHhCCC-CccCHHHHHHHHHHhC
Confidence 4689999999887776643113367788887 66665443 5799999999998633
No 166
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=46.95 E-value=99 Score=21.68 Aligned_cols=47 Identities=13% Similarity=0.140 Sum_probs=23.4
Q ss_pred CCccchhhhhc-ccccc---cCChHH---HHHHHhcCCCCCCccHHHHHHHHhh
Q psy17871 46 NAKLPMTKILL-YPQLR---VNPFGD---RICHIFSSSHDGDCTFEDFLDMMSV 92 (189)
Q Consensus 46 ~g~i~~~e~~~-l~~~~---~~~~~~---~l~~~~d~~~~g~i~~~ef~~~~~~ 92 (189)
...++-..|.. ++..+ ...+.. -+|..+...+...|+|++|+..|..
T Consensus 16 ~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 16 GTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAE 69 (154)
T ss_dssp SSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHH
Confidence 44666666666 44332 223332 3444444444455777777776643
No 167
>PF09824 ArsR: ArsR transcriptional regulator; InterPro: IPR014517 Members of this family of archaeal proteins are conserved transcriptional regulators belonging to the ArsR family.
Probab=46.39 E-value=67 Score=22.75 Aligned_cols=68 Identities=19% Similarity=0.280 Sum_probs=48.9
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhChhHHhh
Q psy17871 102 KAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQDFAKW 178 (189)
Q Consensus 102 ~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~~~~~~ 178 (189)
+....|..+-.| =..+.+++..++... -+++++++.+++++.+.... |.++..+..+-+-..|.++..
T Consensus 73 EYhtsYs~vqaN--Fqcs~~DLsdii~i~----f~~deel~~~~e~i~~~v~~---Gn~Sl~~lsr~l~~sp~firg 140 (160)
T PF09824_consen 73 EYHTSYSKVQAN--FQCSMEDLSDIIYIA----FMSDEELRDYVEKIEKEVEA---GNTSLSDLSRKLGISPVFIRG 140 (160)
T ss_pred HHHhhHhheeee--eEeeHHHHHHHHhee----ecCHHHHHHHHHHHHHHHHc---CCCcHHHHHHHhCCCHHHHHH
Confidence 344444444333 457888999888664 57889999998888888764 668888888877777877654
No 168
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=45.19 E-value=85 Score=20.58 Aligned_cols=58 Identities=19% Similarity=0.248 Sum_probs=36.1
Q ss_pred CcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhChhHHhh
Q psy17871 116 DMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQDFAKW 178 (189)
Q Consensus 116 G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~~~~~~ 178 (189)
...+.+|+..++..++. + .+.+-+--...++....+. ..++-++++.++..+|.+++.
T Consensus 35 ~~~~~~el~~~~~~~~~--~--~~~l~n~~~~~~k~l~~~~-~~ls~~e~i~~l~~~p~LikR 92 (115)
T cd03032 35 QPLTKEELKEILSLTEN--G--VEDIISTRSKAFKNLNIDI-DELSLSELIRLISEHPSLLRR 92 (115)
T ss_pred CcchHHHHHHHHHHhcC--C--HHHHHhcCcHHHHHcCCCc-ccCCHHHHHHHHHhChhheeC
Confidence 45788889988887754 3 1111110111245554443 458899999999999987643
No 169
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=45.05 E-value=43 Score=21.77 Aligned_cols=56 Identities=13% Similarity=0.083 Sum_probs=32.8
Q ss_pred cccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhChhHHhh
Q psy17871 117 MLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQDFAKW 178 (189)
Q Consensus 117 ~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~~~~~~ 178 (189)
.+|.+|+..++...|. .+-+. --...++.+..+....++-++.+.++..+|.+++.
T Consensus 35 p~s~~eL~~~l~~~g~-----~~li~-~~~~~yk~l~l~~~~~~s~~e~~~~l~~~p~LikR 90 (105)
T cd03035 35 GLDAATLERWLAKVGW-----ETLLN-KRGTTWRKLDDAQKAALDAAKAIALMLEHPSLIKR 90 (105)
T ss_pred CCCHHHHHHHHHHhCh-----HHHHc-cCchHHHhCChhhhccCCHHHHHHHHHhCcCeeec
Confidence 4788888888876541 11110 00011444444322358889999999999987643
No 170
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=42.33 E-value=56 Score=17.56 Aligned_cols=36 Identities=22% Similarity=0.316 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHcCCCC-CCcccHHHHHHHHH-hChhHH
Q psy17871 141 IQHLIQNILDEADLDD-DGALSFAEFELFIE-KSQDFA 176 (189)
Q Consensus 141 ~~~~i~~~~~~~d~~~-dg~I~~~eF~~~~~-~~~~~~ 176 (189)
+..+|.-+-+++..++ ..+++..||..++. ..|.++
T Consensus 5 i~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~Elp~fl 42 (44)
T PF01023_consen 5 IETIIDVFHKYAGKEGDKDTLSKKELKELLEKELPNFL 42 (44)
T ss_dssp HHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHHHSTTTH
T ss_pred HHHHHHHHHHHhccCCCCCeEcHHHHHHHHHHHHHHHh
Confidence 3455555555554443 56899999999887 566654
No 171
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=41.90 E-value=1.1e+02 Score=21.13 Aligned_cols=63 Identities=17% Similarity=0.231 Sum_probs=33.5
Q ss_pred CCccHHHHHHHHhhcCCCCChhhHHHHHHHHhcCC-------CCCcccHHHHHHHHHHHhCCCCCCHHHHHHHH
Q psy17871 79 GDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFD-------GDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLI 145 (189)
Q Consensus 79 g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~~-------~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i 145 (189)
+.++-.||.++-....... -+++.+...|..+ ..+.|+.+-|+.+|...... .++++-+..+.
T Consensus 6 ~~lsp~eF~qLq~y~eys~---kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~-d~P~~lc~hLF 75 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSEYST---KKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEV-DLPEDLCQHLF 75 (138)
T ss_dssp S-S-HHHHHHHHHHHHH-------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT--S--HHHHHHHH
T ss_pred eccCHHHHHHHHHHHHHHH---HHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 4566677765543321111 1444444444222 34589999999999998776 78888888883
No 172
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=41.77 E-value=72 Score=20.99 Aligned_cols=59 Identities=17% Similarity=0.128 Sum_probs=36.1
Q ss_pred CcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhChhHHhh
Q psy17871 116 DMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQDFAKW 178 (189)
Q Consensus 116 G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~~~~~~ 178 (189)
-.+|.+|+..++..+|. ....+-+.. -...++....+. ..++-++++.++..+|.+++.
T Consensus 34 ~p~t~~el~~~l~~~g~--~~~~~lin~-~~~~~~~l~~~~-~~ls~~e~i~~l~~~P~LikR 92 (114)
T TIGR00014 34 NPPTKSELEAIFAKLGL--TVAREMIRT-KEALYKELGLSD-PNLSDQELLDAMVAHPILLER 92 (114)
T ss_pred CCcCHHHHHHHHHHcCC--chHHHHHhc-CCcHHHHcCCCc-cCCCHHHHHHHHHHCcCcccC
Confidence 35888999999988654 210111110 011244444433 358889999999999987653
No 173
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=40.85 E-value=46 Score=21.78 Aligned_cols=67 Identities=16% Similarity=0.135 Sum_probs=38.4
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCC-CcccHHHHHHHHHhChhHHhh
Q psy17871 107 FRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDD-GALSFAEFELFIEKSQDFAKW 178 (189)
Q Consensus 107 F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~d-g~I~~~eF~~~~~~~~~~~~~ 178 (189)
|...|-..+ ..+.+|+..++...+. +. ..+-.--...++.+..+.. ..++-++.+.++..+|.+++.
T Consensus 26 ~~~idi~~~-~~~~~el~~~~~~~~~--~~--~~l~~~~~~~~~~l~~~~~~~~~s~~e~~~~l~~~p~LikR 93 (111)
T cd03036 26 YTAIDIVEE-PPSKEELKKWLEKSGL--PL--KKFFNTSGKSYRELGLKDKLPSLSEEEALELLSSDGMLIKR 93 (111)
T ss_pred eEEecccCC-cccHHHHHHHHHHcCC--CH--HHHHhcCCchHHhCCcccccccCCHHHHHHHHHhCcCeeeC
Confidence 334444433 5788899988887754 22 1110100112455544322 246889999999999987643
No 174
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=40.71 E-value=37 Score=21.10 Aligned_cols=52 Identities=21% Similarity=0.284 Sum_probs=32.5
Q ss_pred cCCCHHHHH-HHHHHHhhCCCCCCCCCCCccchhhhhc-ccc-cccCChHHHHHHHhcCCCCC
Q psy17871 20 TYFTKKEIL-AHQKFKSLAPEKVGHNKNAKLPMTKILL-YPQ-LRVNPFGDRICHIFSSSHDG 79 (189)
Q Consensus 20 ~~~~~~e~~-~~~~F~~~d~~~~~~~~~g~i~~~e~~~-l~~-~~~~~~~~~l~~~~d~~~~g 79 (189)
..++.+++. ++++|+.+=..+ .+.++-.. +.. ...++....+.+.+.....|
T Consensus 26 ~Gfs~~~i~~l~~ayr~l~~~~--------~~~~~a~~~l~~~~~~~~~v~~~~~Fi~~S~RG 80 (83)
T PF13720_consen 26 RGFSKEEISALRRAYRILFRSG--------LTLEEALEELEEEYPDSPEVREIVDFIRNSKRG 80 (83)
T ss_dssp TTS-HHHHHHHHHHHHHHHTSS--------S-HHHHHHHHHHHTTSCHHHHHHHHHHHHTSS-
T ss_pred cCCCHHHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHhccCCHHHHHHHHHHHhCCCC
Confidence 579999999 999998876543 46666555 544 44456666676666544444
No 175
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=40.07 E-value=1.1e+02 Score=20.33 Aligned_cols=55 Identities=11% Similarity=0.218 Sum_probs=39.5
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHH
Q psy17871 102 KAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFEL 167 (189)
Q Consensus 102 ~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~ 167 (189)
+...+|-+.-.-++..+|.+++..+|...|. .+....+..+ ++.+.. .+.++.+.
T Consensus 4 kyvaAYlL~~lgG~~~pTaddI~kIL~AaGv--eVd~~~~~l~----~~~L~G-----KdI~ELIa 58 (112)
T PTZ00373 4 KYVAAYLMCVLGGNENPTKKEVKNVLSAVNA--DVEDDVLDNF----FKSLEG-----KTPHELIA 58 (112)
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHcCC--CccHHHHHHH----HHHHcC-----CCHHHHHH
Confidence 3445677777777778999999999999998 7888877776 355532 45555554
No 176
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=38.74 E-value=55 Score=23.82 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=19.9
Q ss_pred cCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHH
Q psy17871 111 DFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLI 145 (189)
Q Consensus 111 D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i 145 (189)
..+.+|+++.++|.+.+..-+. .++.+++..++
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~--~~t~~~i~~vV 58 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGL--WVTEEDIREVV 58 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-T--T--HHHHHHHH
T ss_pred ccCCCCCEeHHHHHHHHHHcCC--CCCHHHHHHHH
Confidence 4567788888888888877666 67888887774
No 177
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=38.53 E-value=1.1e+02 Score=19.86 Aligned_cols=64 Identities=17% Similarity=0.196 Sum_probs=32.3
Q ss_pred hhHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHh
Q psy17871 100 PVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEK 171 (189)
Q Consensus 100 ~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~ 171 (189)
+..+..-|..+-. +|+++...|-+.+ |. .-+.+-+.++.+-+-+.-... ...|+.+|+..+...
T Consensus 29 W~~VE~RFd~La~--dG~L~rs~Fg~CI---GM--~dSkeFA~eLFdALaRrr~i~-~~~I~k~eL~efW~q 92 (100)
T PF08414_consen 29 WKEVEKRFDKLAK--DGLLPRSDFGECI---GM--KDSKEFAGELFDALARRRGIK-GDSITKDELKEFWEQ 92 (100)
T ss_dssp HHHHHHHHHHH-B--TTBEEGGGHHHHH---T----S-HHHHHHHHHHHHHHTT---SSEE-HHHHHHHHHH
T ss_pred HHHHHHHHHHhCc--CCcccHHHHHHhc---CC--cccHHHHHHHHHHHHHhcCCc-cCCcCHHHHHHHHHH
Confidence 4456666777765 6788888877666 22 223333344422222222222 356888887776653
No 178
>KOG0506|consensus
Probab=37.64 E-value=1.5e+02 Score=25.15 Aligned_cols=69 Identities=12% Similarity=0.107 Sum_probs=49.7
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHc----CCCCCCcccHHHHHHHHHhChh
Q psy17871 104 EHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEA----DLDDDGALSFAEFELFIEKSQD 174 (189)
Q Consensus 104 ~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~----d~~~dg~I~~~eF~~~~~~~~~ 174 (189)
..+|..|-.-.++.|+.--|..+|+..|. .-++.-+..|+++|-+.. ....-+.++.+.|.+++...-.
T Consensus 89 DLLFyLiaegq~ekipihKFiTALkstGL--rtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~sSI~ 161 (622)
T KOG0506|consen 89 DLLFYLIAEGQSEKIPIHKFITALKSTGL--RTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFSSIV 161 (622)
T ss_pred hhhhHHhhcCCcCcccHHHHHHHHHHcCC--CcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhccchh
Confidence 36777776666799999999999999998 777777777766633222 2233467899999988765443
No 179
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=37.58 E-value=41 Score=20.73 Aligned_cols=28 Identities=11% Similarity=0.243 Sum_probs=16.4
Q ss_pred CCCcccHHHHHHHHHHHhCCCCCCHHHHHHHH
Q psy17871 114 GDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLI 145 (189)
Q Consensus 114 ~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i 145 (189)
..|+||.+++..+|... .++.+.++.++
T Consensus 18 ~~G~lT~~eI~~~L~~~----~~~~e~id~i~ 45 (82)
T PF03979_consen 18 KKGYLTYDEINDALPED----DLDPEQIDEIY 45 (82)
T ss_dssp HHSS-BHHHHHHH-S-S-------HHHHHHHH
T ss_pred hcCcCCHHHHHHHcCcc----CCCHHHHHHHH
Confidence 46889999998888532 57777777774
No 180
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=37.27 E-value=66 Score=18.80 Aligned_cols=34 Identities=9% Similarity=0.184 Sum_probs=21.6
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCC
Q psy17871 103 AEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLS 137 (189)
Q Consensus 103 l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~ 137 (189)
+..+++.++.+...-++.+|...-+...|.+ .++
T Consensus 6 ~~~v~~~l~t~~~~GLs~~ev~~r~~~~G~N-~l~ 39 (69)
T PF00690_consen 6 VEEVLKRLNTSSSQGLSSEEVEERRKKYGPN-ELP 39 (69)
T ss_dssp HHHHHHHHTTBTSSBBTHHHHHHHHHHHSSS-STT
T ss_pred HHHHHHHHCcCCCCCCCHHHHHHHHHhcccc-ccc
Confidence 3456666665555557777777777776664 443
No 181
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=36.52 E-value=66 Score=23.33 Aligned_cols=33 Identities=6% Similarity=0.237 Sum_probs=25.1
Q ss_pred cCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHH
Q psy17871 111 DFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLI 145 (189)
Q Consensus 111 D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i 145 (189)
-.|.+|++..++|.+.++.-+. .++.+++.+++
T Consensus 27 ~ld~~G~v~v~~Ll~~~~~~~~--~~t~~~l~~vV 59 (179)
T PRK00819 27 TLDEEGWVDIDALIEALAKAYK--WVTRELLEAVV 59 (179)
T ss_pred ccCCCCCEEHHHHHHHHHHccC--CCCHHHHHHHH
Confidence 3467788998888888876555 68888887774
No 182
>TIGR00988 hip integration host factor, beta subunit. This protein forms a site-specific DNA-binding heterodimer with the homologous integration host factor alpha subunit. It is closely related to the DNA-binding protein HU.
Probab=36.48 E-value=42 Score=21.13 Aligned_cols=45 Identities=18% Similarity=0.389 Sum_probs=25.8
Q ss_pred cHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcC--CCCCCcccHHHH
Q psy17871 119 GMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEAD--LDDDGALSFAEF 165 (189)
Q Consensus 119 ~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d--~~~dg~I~~~eF 165 (189)
+..||...+..-.. .++..++..+++.+++.+. ....+.|.+.+|
T Consensus 2 ~k~eli~~i~~~~~--~~s~~~v~~vv~~~~~~i~~~L~~g~~V~l~gf 48 (94)
T TIGR00988 2 TKSELIERIATQQS--HLPAKDVEDAVKTMLEHMASALAQGDRIEIRGF 48 (94)
T ss_pred CHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHcCCeEEEcCc
Confidence 56677777765434 5777777776666565541 233444555444
No 183
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=35.67 E-value=1.1e+02 Score=20.75 Aligned_cols=57 Identities=16% Similarity=0.306 Sum_probs=33.6
Q ss_pred CcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhChhHHh
Q psy17871 116 DMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQDFAK 177 (189)
Q Consensus 116 G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~~~~~ 177 (189)
...+.+|+.+++..++. + .+++-+--...++....+. ..++-++++.++..+|.++.
T Consensus 35 ~~~~~~eL~~~l~~~~~--g--~~~lin~~~~~~k~l~~~~-~~ls~~e~i~ll~~~p~Lik 91 (131)
T PRK01655 35 SPLTIDEIKQILRMTED--G--TDEIISTRSKVFQKLNVDV-ESLSLQDLIKLISDNPGLLR 91 (131)
T ss_pred ChhhHHHHHHHHHHhcC--C--HHHHHhcCcHHHHhCCCCc-ccCCHHHHHHHHHhCcceEe
Confidence 34677788888877644 3 1111110111245554444 35788899999999888754
No 184
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=35.14 E-value=1.1e+02 Score=24.58 Aligned_cols=42 Identities=14% Similarity=0.242 Sum_probs=21.4
Q ss_pred CCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHH
Q psy17871 115 DDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELF 168 (189)
Q Consensus 115 ~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~ 168 (189)
+|.||++|=...+..... ..+++.++.+ ++.++ |+-+||...
T Consensus 300 ~G~itReeal~~v~~~d~--~~~~~~~~~~----~~~lg------~t~~ef~~~ 341 (343)
T TIGR03573 300 SGRITREEAIELVKEYDG--EFPKEDLEYF----LKYLG------ISEEEFWKT 341 (343)
T ss_pred cCCCCHHHHHHHHHHhcc--cccHHHHHHH----HHHhC------CCHHHHHHH
Confidence 456666666655555333 3444444443 44443 555666554
No 185
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=35.12 E-value=73 Score=16.73 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHhhcCCCHHHHH
Q psy17871 7 QFTEEELQDYEDLTYFTKKEIL 28 (189)
Q Consensus 7 ~l~~~~~~~~~~~~~~~~~e~~ 28 (189)
..++++..+|.+.+.++..++.
T Consensus 10 YPs~~ek~~L~~~tgls~~Qi~ 31 (40)
T PF05920_consen 10 YPSKEEKEELAKQTGLSRKQIS 31 (40)
T ss_dssp S--HHHHHHHHHHHTS-HHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHH
Confidence 5788999999999999999987
No 186
>KOG0998|consensus
Probab=34.64 E-value=45 Score=30.46 Aligned_cols=67 Identities=6% Similarity=0.127 Sum_probs=52.0
Q ss_pred CCCHHHHH-HHHHHHhhCCCCCCCCCCCccchhhhhc-ccccccCC-hHHHHHHHhcCCCCCCccHHHHHHHHhh
Q psy17871 21 YFTKKEIL-AHQKFKSLAPEKVGHNKNAKLPMTKILL-YPQLRVNP-FGDRICHIFSSSHDGDCTFEDFLDMMSV 92 (189)
Q Consensus 21 ~~~~~e~~-~~~~F~~~d~~~~~~~~~g~i~~~e~~~-l~~~~~~~-~~~~l~~~~d~~~~g~i~~~ef~~~~~~ 92 (189)
..++.... +.++|...|.+. +|.|+..+... +...|... ....++...+....|.+++.+|+-.+..
T Consensus 276 ~vsp~d~~~~~~if~q~d~~~-----dG~I~s~~~~~~f~~~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~ 345 (847)
T KOG0998|consen 276 KVSPSDKQKYSKIFSQVDKDN-----DGSISSNEARNIFLPFGLSKPRLAHVWLLADTQNTGTLSKDEFALAMHL 345 (847)
T ss_pred ccChHHHHHHHHHHHhccccC-----CCcccccccccccccCCCChhhhhhhhhhcchhccCcccccccchhhhh
Confidence 45666677 888999999999 99999999999 65555443 3456666777788899999998777654
No 187
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=33.88 E-value=1.1e+02 Score=19.12 Aligned_cols=17 Identities=29% Similarity=0.718 Sum_probs=11.3
Q ss_pred hHHHHHHHHhcCCCCCc
Q psy17871 101 VKAEHAFRIFDFDGDDM 117 (189)
Q Consensus 101 ~~l~~~F~~~D~~~~G~ 117 (189)
.++..||+.+-.+++-.
T Consensus 59 ~EL~EA~rl~~~n~~~~ 75 (83)
T cd06404 59 MELEEAFRLYELNKDSE 75 (83)
T ss_pred HHHHHHHHHHHhcCccc
Confidence 36777777777666543
No 188
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=33.13 E-value=26 Score=22.86 Aligned_cols=63 Identities=17% Similarity=0.237 Sum_probs=35.1
Q ss_pred hcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhChhHHh
Q psy17871 110 FDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQDFAK 177 (189)
Q Consensus 110 ~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~~~~~ 177 (189)
.|-..+ .+|.+|+..++..++. ++.+ -+.. -...++..+......++-++++.++..+|.++.
T Consensus 26 ~d~~k~-p~s~~el~~~l~~~~~--~~~~-lin~-~~~~~k~l~~~~~~~~s~~e~i~~l~~~p~Lik 88 (110)
T PF03960_consen 26 IDYKKE-PLSREELRELLSKLGN--GPDD-LINT-RSKTYKELGKLKKDDLSDEELIELLLENPKLIK 88 (110)
T ss_dssp EETTTS----HHHHHHHHHHHTS--SGGG-GB-T-TSHHHHHTTHHHCTTSBHHHHHHHHHHSGGGB-
T ss_pred ehhhhC-CCCHHHHHHHHHHhcc--cHHH-HhcC-ccchHhhhhhhhhhhhhhHHHHHHHHhChhhee
Confidence 344333 4999999999999884 2110 0000 000134444112345999999999999998764
No 189
>COG5562 Phage envelope protein [General function prediction only]
Probab=32.96 E-value=41 Score=23.09 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=16.1
Q ss_pred HHHHHHhcCCCCCCccHHHHHHHHhh
Q psy17871 67 DRICHIFSSSHDGDCTFEDFLDMMSV 92 (189)
Q Consensus 67 ~~l~~~~d~~~~g~i~~~ef~~~~~~ 92 (189)
.-|.........|..+|++|+..+..
T Consensus 75 ~~i~~al~~~qsGqttF~ef~~~la~ 100 (137)
T COG5562 75 TLIKTALRRHQSGQTTFEEFCSALAE 100 (137)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHh
Confidence 34444555566777777777776654
No 190
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=32.28 E-value=1.5e+02 Score=19.55 Aligned_cols=54 Identities=15% Similarity=0.244 Sum_probs=39.0
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHH
Q psy17871 104 EHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELF 168 (189)
Q Consensus 104 ~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~ 168 (189)
..+|-+.-.-++..+|.+.+..+|...|. .+...-+..+ ++.+.. .+.++.+.-
T Consensus 4 vaAylL~~l~g~~~pTa~dI~~IL~AaGv--eVe~~~~~lf----~~~L~G-----Kdi~eLIa~ 57 (109)
T cd05833 4 VAAYLLAVLGGNASPSAADVKKILGSVGV--EVDDEKLNKV----ISELEG-----KDVEELIAA 57 (109)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcCC--CccHHHHHHH----HHHHcC-----CCHHHHHHH
Confidence 45666677777888999999999999998 7888777766 344431 455665553
No 191
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=32.24 E-value=1.2e+02 Score=18.18 Aligned_cols=12 Identities=8% Similarity=0.318 Sum_probs=5.8
Q ss_pred ccHHHHHHHHHH
Q psy17871 118 LGMTDLKQIIDR 129 (189)
Q Consensus 118 I~~~el~~~l~~ 129 (189)
||..|+..+|+.
T Consensus 30 vs~~el~a~lrk 41 (68)
T PF07308_consen 30 VSKAELSAWLRK 41 (68)
T ss_pred cCHHHHHHHHCC
Confidence 444444444444
No 192
>PRK13510 sulfur transfer complex subunit TusB; Provisional
Probab=31.19 E-value=29 Score=22.22 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=17.9
Q ss_pred CCCcccHHHHHHHHHhChhHHhh
Q psy17871 156 DDGALSFAEFELFIEKSQDFAKW 178 (189)
Q Consensus 156 ~dg~I~~~eF~~~~~~~~~~~~~ 178 (189)
+-..|+|++|+.+..+++..+.|
T Consensus 73 ~i~~IdY~~FV~Lt~~h~~~i~W 95 (95)
T PRK13510 73 SIILISYTDFVRLTVKHSQQMAW 95 (95)
T ss_pred CceEECHHHHHHHHHhcCCcccC
Confidence 34589999999999988865433
No 193
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=30.77 E-value=22 Score=24.02 Aligned_cols=54 Identities=19% Similarity=0.229 Sum_probs=25.7
Q ss_pred CCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHh
Q psy17871 114 GDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEK 171 (189)
Q Consensus 114 ~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~ 171 (189)
-||.|+.+|...+...+.....++..+...++ ..++.-....+++.+|...+..
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~l~~ 89 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELI----ELADELKQEPIDLEELLRELRD 89 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHH----HHHCHHHHHCCHHHHHHHHHCT
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHH----HHHHHHHhccccHHHHHHHHHH
Confidence 35677777777666655221144555555542 2222222224566666665554
No 194
>PRK00016 metal-binding heat shock protein; Provisional
Probab=30.37 E-value=1.5e+02 Score=20.93 Aligned_cols=69 Identities=16% Similarity=0.142 Sum_probs=51.6
Q ss_pred CCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhChhHHhhhhhhhhhh
Q psy17871 113 DGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQDFAKWTSIQREYI 186 (189)
Q Consensus 113 ~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~~~~~~~~~~~~~~ 186 (189)
-|+=.|+.+-+.+-....+. .+..+-+.-++..++-.+.-|+ ++-++...+......+++.+++..+|+
T Consensus 88 LGDI~Is~~~~~~qa~~~~~--s~~~e~~~l~iHG~LHLlGYDH---~~~~e~~~M~~~E~~il~~l~~~~~~~ 156 (159)
T PRK00016 88 LGDIVICPEVAEEQAEEQGH--SLERELAHLTVHGILHLLGYDH---IEDEEAEEMFGLEEEILAALGLPRPYI 156 (159)
T ss_pred ceeEEEcHHHHHHHHHHcCC--CHHHHHHHHHHHhhHHhcCCCC---CChHHHHHHHHHHHHHHHHcCCCCccc
Confidence 36777888877766666665 5666666777777788887776 556788888888888888888887775
No 195
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=29.38 E-value=1.5e+02 Score=19.57 Aligned_cols=10 Identities=30% Similarity=0.587 Sum_probs=3.8
Q ss_pred ccHHHHHHHH
Q psy17871 118 LGMTDLKQII 127 (189)
Q Consensus 118 I~~~el~~~l 127 (189)
++.+++.++|
T Consensus 95 ~~~e~l~~IL 104 (112)
T PRK14981 95 LSPEELDEIL 104 (112)
T ss_pred CCHHHHHHHH
Confidence 3333333333
No 196
>PLN02228 Phosphoinositide phospholipase C
Probab=28.84 E-value=2.8e+02 Score=24.25 Aligned_cols=51 Identities=10% Similarity=0.213 Sum_probs=32.6
Q ss_pred CCccHHHHHHHHhhcCCC-CChhhHHHHHHHHhcCC----CCCcccHHHHHHHHHH
Q psy17871 79 GDCTFEDFLDMMSVFSES-APKPVKAEHAFRIFDFD----GDDMLGMTDLKQIIDR 129 (189)
Q Consensus 79 g~i~~~ef~~~~~~~~~~-~~~~~~l~~~F~~~D~~----~~G~I~~~el~~~l~~ 129 (189)
+.++.++|..++...... ....+.+..+|..+... ..|.++.+.|...|..
T Consensus 37 ~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 37 GKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred CccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 568888888888764432 12233566777776533 3467888888877754
No 197
>KOG3442|consensus
Probab=27.59 E-value=1.2e+02 Score=20.66 Aligned_cols=42 Identities=14% Similarity=0.355 Sum_probs=32.7
Q ss_pred CCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCC
Q psy17871 114 GDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDG 158 (189)
Q Consensus 114 ~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg 158 (189)
..|.||.+|-.++|+.- . +++.++++.-.+.+|.-=|...-|
T Consensus 52 ~~~~iTlqEa~qILnV~-~--~ln~eei~k~yehLFevNdkskGG 93 (132)
T KOG3442|consen 52 SNGKITLQEAQQILNVK-E--PLNREEIEKRYEHLFEVNDKSKGG 93 (132)
T ss_pred ccccccHHHHhhHhCCC-C--CCCHHHHHHHHHHHHhccCcccCc
Confidence 34779999999999653 3 688899988877778877877656
No 198
>COG5394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.09 E-value=2.4e+02 Score=20.20 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=10.4
Q ss_pred HHHhcCCCCCcccHHHHHHHH
Q psy17871 107 FRIFDFDGDDMLGMTDLKQII 127 (189)
Q Consensus 107 F~~~D~~~~G~I~~~el~~~l 127 (189)
|++.|.....-||..=|-+++
T Consensus 44 F~V~DAKsgeDiT~sVLtQII 64 (193)
T COG5394 44 FRVQDAKSGEDITHSVLTQII 64 (193)
T ss_pred eEEeeccccchhhHHHHHHHH
Confidence 455555544445544444444
No 199
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=26.42 E-value=1.7e+02 Score=18.39 Aligned_cols=25 Identities=12% Similarity=0.256 Sum_probs=17.9
Q ss_pred ccHHHHHHHHHHHhCCCCCCHHHHHHH
Q psy17871 118 LGMTDLKQIIDRLTGTHHLSDNDIQHL 144 (189)
Q Consensus 118 I~~~el~~~l~~~~~~~~~~~~e~~~~ 144 (189)
|+.+++.++.+.... .+++++++.+
T Consensus 1 i~~~~v~~lA~La~L--~l~eee~~~~ 25 (93)
T TIGR00135 1 ISDEEVKHLAKLARL--ELSEEEAESF 25 (93)
T ss_pred CCHHHHHHHHHHhCC--CCCHHHHHHH
Confidence 567777777777666 7888877554
No 200
>KOG4403|consensus
Probab=26.31 E-value=2e+02 Score=24.06 Aligned_cols=94 Identities=12% Similarity=0.061 Sum_probs=55.9
Q ss_pred CCccchhhhhc-cccccc----CCh---HHHHHHHhcCCCCCCccHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCCCc
Q psy17871 46 NAKLPMTKILL-YPQLRV----NPF---GDRICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDM 117 (189)
Q Consensus 46 ~g~i~~~e~~~-l~~~~~----~~~---~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~ 117 (189)
+...+..+|+. ...... ... ...|-+.+|.+.+|.|+.+|=-.++..-+.-.....+-...|.. .|..
T Consensus 42 ds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH~----dD~~ 117 (575)
T KOG4403|consen 42 DSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKFHG----DDKH 117 (575)
T ss_pred CchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhccC----Cccc
Confidence 55677777777 322211 111 23456667889999999988666665422212222233345655 3467
Q ss_pred ccHHHHHHHHHHHhCCCCCCHHHH-HHH
Q psy17871 118 LGMTDLKQIIDRLTGTHHLSDNDI-QHL 144 (189)
Q Consensus 118 I~~~el~~~l~~~~~~~~~~~~e~-~~~ 144 (189)
||.++|..++.....+ ..|.+++ +.+
T Consensus 118 ItVedLWeaW~~Sev~-nWT~e~tvqWL 144 (575)
T KOG4403|consen 118 ITVEDLWEAWKESEVH-NWTNERTVQWL 144 (575)
T ss_pred eeHHHHHHHHHhhhhh-cchHHHHHHHH
Confidence 9999999888776554 6776654 444
No 201
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=26.06 E-value=1.4e+02 Score=22.98 Aligned_cols=52 Identities=23% Similarity=0.279 Sum_probs=33.5
Q ss_pred cCCCHHHHH-HHHHHHhhCCCCCCCCCCCccchhhhhc--ccccccCChHHHHHHHhcCCCCC
Q psy17871 20 TYFTKKEIL-AHQKFKSLAPEKVGHNKNAKLPMTKILL--YPQLRVNPFGDRICHIFSSSHDG 79 (189)
Q Consensus 20 ~~~~~~e~~-~~~~F~~~d~~~~~~~~~g~i~~~e~~~--l~~~~~~~~~~~l~~~~d~~~~g 79 (189)
..|+.+++. ++++|+.+=..+ .+.++-.. +......+....+.+.+..+..+
T Consensus 203 rgf~~e~i~alr~ayk~lfr~~--------~~~~e~~~~i~~~~~~~~~v~~~~dFi~~s~r~ 257 (260)
T COG1043 203 RGFSREEIHALRKAYKLLFRSG--------LTLREALEEIAEEYADNPEVKEFIDFIASSSRG 257 (260)
T ss_pred cCCCHHHHHHHHHHHHHHeeCC--------CCHHHHHHHHHHHhcCChHHHHHHHHHhhcccc
Confidence 478999999 999999876553 45554444 44445566666666666554433
No 202
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=25.96 E-value=2.1e+02 Score=19.08 Aligned_cols=56 Identities=20% Similarity=0.202 Sum_probs=35.2
Q ss_pred cccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhChhHHh
Q psy17871 117 MLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQDFAK 177 (189)
Q Consensus 117 ~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~~~~~ 177 (189)
.+|.++|.+++..+|. + -+++-.--...++.++.+ ...++-++....+..+|.+++
T Consensus 37 ~~s~~eL~~~l~~~g~--~--~~~li~t~~~~~r~L~~~-~~~~~~~~~~~~i~~~~~Lik 92 (117)
T COG1393 37 PPSREELKKILSKLGD--G--VEELINTRGTTYRELNLD-KEDLSDEELIEALLENPSLIK 92 (117)
T ss_pred CCCHHHHHHHHHHcCc--c--HHHHHHhccchHHHcCCc-ccccChHHHHHHHHhChhhcc
Confidence 4899999999988865 3 222211111135666633 246888888888888886543
No 203
>PF08708 PriCT_1: Primase C terminal 1 (PriCT-1); InterPro: IPR014820 This alpha helical domain is found at the C-terminal of primases.
Probab=25.91 E-value=1.5e+02 Score=17.40 Aligned_cols=16 Identities=13% Similarity=0.441 Sum_probs=11.3
Q ss_pred CCCHHHHHHHHHHHHH
Q psy17871 135 HLSDNDIQHLIQNILD 150 (189)
Q Consensus 135 ~~~~~e~~~~i~~~~~ 150 (189)
+++..|+..+++++.+
T Consensus 52 PL~~~Ev~~i~kSi~k 67 (71)
T PF08708_consen 52 PLPESEVKAIAKSIAK 67 (71)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7788888777766543
No 204
>KOG2301|consensus
Probab=25.83 E-value=41 Score=32.88 Aligned_cols=68 Identities=16% Similarity=0.203 Sum_probs=45.4
Q ss_pred hHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHh
Q psy17871 101 VKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEK 171 (189)
Q Consensus 101 ~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~ 171 (189)
+....++..+|++.+|.|...++..+++.+.++..+....=..++ -..+....++.|++.+=..++.+
T Consensus 1417 ~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~kli---~mdmp~~~gd~V~f~d~L~aL~~ 1484 (1592)
T KOG2301|consen 1417 EKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKRKLI---SMDLPMVSGDRVHCLDILFALTK 1484 (1592)
T ss_pred HHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCceee---eeecCcCCCCeeehhhHHHHHHH
Confidence 356788899999999999999999999998663211110000221 34444556777888877776664
No 205
>KOG3442|consensus
Probab=25.34 E-value=1.8e+02 Score=19.73 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHHhhc-CCCHHHHH--HHHHHHhhCCCC
Q psy17871 6 SQFTEEELQDYEDLT-YFTKKEIL--AHQKFKSLAPEK 40 (189)
Q Consensus 6 s~l~~~~~~~~~~~~-~~~~~e~~--~~~~F~~~d~~~ 40 (189)
+.+|-++-.++...+ .++.+++. +..+|...|+..
T Consensus 54 ~~iTlqEa~qILnV~~~ln~eei~k~yehLFevNdksk 91 (132)
T KOG3442|consen 54 GKITLQEAQQILNVKEPLNREEIEKRYEHLFEVNDKSK 91 (132)
T ss_pred ccccHHHHhhHhCCCCCCCHHHHHHHHHHHHhccCccc
Confidence 457888878887755 67888888 899999999885
No 206
>COG3793 TerB Tellurite resistance protein [Inorganic ion transport and metabolism]
Probab=24.45 E-value=2.5e+02 Score=19.59 Aligned_cols=60 Identities=12% Similarity=0.217 Sum_probs=27.3
Q ss_pred CCcccHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHHHcCCCCC-CcccHHHHHHHHHhChh
Q psy17871 115 DDMLGMTDLKQIIDRLTGTH---HLSDNDIQHLIQNILDEADLDDD-GALSFAEFELFIEKSQD 174 (189)
Q Consensus 115 ~G~I~~~el~~~l~~~~~~~---~~~~~e~~~~i~~~~~~~d~~~d-g~I~~~eF~~~~~~~~~ 174 (189)
+|.++.+|...++..+.... ..+..++..+.+.+....+.+.+ |++.-.+.+..+++.+.
T Consensus 38 dg~~~~~e~~~~~~~~~s~~~L~~f~~~~i~~~~~~~~~~~~~d~~~gk~ea~~~I~~lk~d~e 101 (144)
T COG3793 38 DGEVDSEEKQKMVQFLRSSAALSVFDSNEINEIFETLVGSFDTDFEIGKREAMKEIEDLKHDTE 101 (144)
T ss_pred ccccChHHHHHHHHHHHcChhhhhccHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhcCChH
Confidence 45555566665555543211 12222333333333344444443 55555555555555443
No 207
>PF09966 DUF2200: Uncharacterized protein conserved in bacteria (DUF2200); InterPro: IPR014580 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 3C9P_A.
Probab=24.41 E-value=2.1e+02 Score=18.90 Aligned_cols=37 Identities=22% Similarity=0.352 Sum_probs=18.5
Q ss_pred cHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHH
Q psy17871 119 GMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFI 169 (189)
Q Consensus 119 ~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~ 169 (189)
|.+|+.+++.=+- +.+.+++...+ +..++|++|..-.
T Consensus 24 t~~Evd~vi~WLT---Gy~~~~l~~~~-----------~~~~~~~~FF~~A 60 (111)
T PF09966_consen 24 TKEEVDQVIRWLT---GYDQEELQAQI-----------ESKVTFETFFAQA 60 (111)
T ss_dssp -HHHHHHHHHHHH------HHHHHHHT-----------TS--BHHHHHHT-
T ss_pred CHHHHHHHHHHHh---cCCHHHHHHHH-----------HcCCCHHHHHHHc
Confidence 4566666665443 36666665552 3458999887743
No 208
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=24.39 E-value=1.4e+02 Score=21.28 Aligned_cols=67 Identities=7% Similarity=0.194 Sum_probs=37.5
Q ss_pred ccHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Q psy17871 81 CTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDE 151 (189)
Q Consensus 81 i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~ 151 (189)
..-..|+.-+..-.... ...++..|++.+-.++...++..+|...+. +|. .+|+++++..|...+..
T Consensus 66 ~~~r~~iv~~I~~gklk-t~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~cG-VGV--~VT~E~I~~~V~~~i~~ 132 (164)
T PF04558_consen 66 LPHRPFIVKYIVDGKLK-TNLQLDAALKYLKSNPSEPIDVAEFEKACG-VGV--VVTPEQIEAAVEKYIEE 132 (164)
T ss_dssp -TTHHHHHHHHHTTS---SHHHHHHHHHHHHHHGG-G--HHHHHHTTT-TT------HHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHhCCCC-CHHHHHHHHHHHHHCCCCCCCHHHHHHHcC-CCe--EECHHHHHHHHHHHHHH
Confidence 44445554443322222 234888999998777777899999987663 245 68999999888665543
No 209
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=24.17 E-value=1.9e+02 Score=18.16 Aligned_cols=54 Identities=7% Similarity=0.077 Sum_probs=35.2
Q ss_pred CCCccHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCCCcccHHHHHHHHHHHhC
Q psy17871 78 DGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTG 132 (189)
Q Consensus 78 ~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~ 132 (189)
...|.+.+|...+.......... .....=..+|--.+|+||.-|+--..+-.+.
T Consensus 20 r~IVPW~~F~~~L~~~h~~~~~~-~~~aLk~TiDlT~n~~iS~FeFdvFtRlFqP 73 (85)
T PF02761_consen 20 RTIVPWSEFRQALQKVHPISSGL-EAMALKSTIDLTCNDYISNFEFDVFTRLFQP 73 (85)
T ss_dssp -SEEEHHHHHHHHHHHS--SSHH-HHHHHHHHH-TTSSSEEEHHHHHHHHHHT--
T ss_pred CeEeeHHHHHHHHHHhcCCCchH-HHHHHHHHHhcccCCccchhhhHHHHHHHhh
Confidence 35689999999988766544433 3344445689999999999998877665543
No 210
>PF00427 PBS_linker_poly: Phycobilisome Linker polypeptide; InterPro: IPR001297 Phycobilisomes (PBSs) are the major light-harvesting systems in cyanobacteria and red algae. PBS is a supercomplex that is composed of a core complex and multiple peripheral rod complexes. Typically, the core consists of two or five cylinders lying on the membrane with, in most cases, multiple rods radiating from the core to form a hemidiscoidal structure. The building units of the core cylinders and the peripheral rods are trimeric and hexameric discs, in which a monomer consists of a pair of related phycobiliproteins (PBPs), such as phycorerythrins, phycoerythrocyanins, phycocyanins, and allophycocyanins. The discs are connected to each other via specific linker polypeptides to form peripheral rods or core cylinders. Linker polypeptides share a conserved domain of ~180 residues, which can be present in one or multiple copies [, , , , ].; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2L8V_A 2KY4_A 3OSJ_D 2L06_A 3NPH_B 2L3W_A 3PRU_C 3OHW_A.
Probab=23.82 E-value=98 Score=21.23 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=18.0
Q ss_pred CCcccHHHHHHHHHhChhHHhh
Q psy17871 157 DGALSFAEFELFIEKSQDFAKW 178 (189)
Q Consensus 157 dg~I~~~eF~~~~~~~~~~~~~ 178 (189)
+|.|+-.+|+..+.+...+.+.
T Consensus 42 ng~IsVreFVr~La~S~~yr~~ 63 (131)
T PF00427_consen 42 NGQISVREFVRALAKSELYRKR 63 (131)
T ss_dssp TTSS-HHHHHHHHHTSHHHHHH
T ss_pred cCCCcHHHHHHHHHcCHHHHHH
Confidence 6789999999999998877655
No 211
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=23.82 E-value=1.7e+02 Score=19.99 Aligned_cols=66 Identities=15% Similarity=0.212 Sum_probs=36.7
Q ss_pred hcCCCCCcccHHHHHHHHHHHhCCC--------------CCCHHHHHHHHHH-HHHHcCCCCCC-cccHHHHHHHHHhCh
Q psy17871 110 FDFDGDDMLGMTDLKQIIDRLTGTH--------------HLSDNDIQHLIQN-ILDEADLDDDG-ALSFAEFELFIEKSQ 173 (189)
Q Consensus 110 ~D~~~~G~I~~~el~~~l~~~~~~~--------------~~~~~e~~~~i~~-~~~~~d~~~dg-~I~~~eF~~~~~~~~ 173 (189)
+..-|...|.+.||+.++..+|... ..+..++..-++. +...+..+-+- ..+.+++...+..+|
T Consensus 11 INVGG~nki~MaeLr~~l~~~Gf~~V~Tyi~SGNvvf~~~~~~~~l~~~ie~~l~~~fG~~v~v~vrs~~el~~i~~~nP 90 (137)
T PF08002_consen 11 INVGGKNKIKMAELREALEDLGFTNVRTYIQSGNVVFESDRDPAELAAKIEKALEERFGFDVPVIVRSAEELRAIIAANP 90 (137)
T ss_dssp -SBTTBS---HHHHHHHHHHCT-EEEEEETTTTEEEEEESS-HHHHHHHHHHHHHHH-TT---EEEEEHHHHHHHHTT--
T ss_pred eecCCCCcccHHHHHHHHHHcCCCCceEEEeeCCEEEecCCChHHHHHHHHHHHHHhcCCCeEEEEeeHHHHHHHHHHCC
Confidence 3445566799999999999976421 3456666554444 34444544332 459999999999999
Q ss_pred hH
Q psy17871 174 DF 175 (189)
Q Consensus 174 ~~ 175 (189)
-.
T Consensus 91 f~ 92 (137)
T PF08002_consen 91 FP 92 (137)
T ss_dssp GG
T ss_pred Cc
Confidence 54
No 212
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=23.38 E-value=1.1e+02 Score=17.83 Aligned_cols=26 Identities=15% Similarity=0.434 Sum_probs=18.5
Q ss_pred cccHHHHHHHHHHHhCCCCCCHHHHHHH
Q psy17871 117 MLGMTDLKQIIDRLTGTHHLSDNDIQHL 144 (189)
Q Consensus 117 ~I~~~el~~~l~~~~~~~~~~~~e~~~~ 144 (189)
.|+.++|..+|..... .++.+++...
T Consensus 29 ~it~~DF~~Al~~~kp--SVs~~dl~~y 54 (62)
T PF09336_consen 29 PITMEDFEEALKKVKP--SVSQEDLKKY 54 (62)
T ss_dssp HBCHHHHHHHHHTCGG--SS-HHHHHHH
T ss_pred CCCHHHHHHHHHHcCC--CCCHHHHHHH
Confidence 4778888888887777 7777777654
No 213
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=23.31 E-value=2e+02 Score=18.91 Aligned_cols=55 Identities=9% Similarity=-0.002 Sum_probs=32.9
Q ss_pred cccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhChhHHhh
Q psy17871 117 MLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQDFAKW 178 (189)
Q Consensus 117 ~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~~~~~~ 178 (189)
.+|.+|+..++..+|. .+.+.. -...++....+. ..++-++.+.++..+|.+++.
T Consensus 36 p~s~~eL~~~l~~~g~-----~~l~n~-~~~~~r~~~~~~-~~ls~~e~~~ll~~~P~LikR 90 (113)
T cd03033 36 PWTAETLRPFFGDLPV-----AEWFNP-AAPRVKSGEVVP-EALDEEEALALMIADPLLIRR 90 (113)
T ss_pred CCCHHHHHHHHHHcCH-----HHHHhc-ccHHHHhcCCCc-cCCCHHHHHHHHHhCcceeeC
Confidence 4788888888875532 111100 011244443332 357889999999999987653
No 214
>KOG4070|consensus
Probab=23.09 E-value=2.1e+02 Score=20.20 Aligned_cols=27 Identities=11% Similarity=0.230 Sum_probs=13.9
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHHh
Q psy17871 105 HAFRIFDFDGDDMLGMTDLKQIIDRLT 131 (189)
Q Consensus 105 ~~F~~~D~~~~G~I~~~el~~~l~~~~ 131 (189)
.+|..+--..-+.|+.++++.+|..+.
T Consensus 61 i~fsKvkg~~~~~~tf~~fkkal~ela 87 (180)
T KOG4070|consen 61 IVFSKVKGKKARTITFEEFKKALEELA 87 (180)
T ss_pred eeeeeccccccccccHHHHHHHHHHHH
Confidence 344444444445566666655555554
No 215
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=23.05 E-value=3.2e+02 Score=20.24 Aligned_cols=80 Identities=20% Similarity=0.296 Sum_probs=47.8
Q ss_pred CCCCCccHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCCCcccHHH-HHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCC
Q psy17871 76 SHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTD-LKQIIDRLTGTHHLSDNDIQHLIQNILDEADL 154 (189)
Q Consensus 76 ~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~e-l~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~ 154 (189)
+-||.|+.+++...+...... . ++. .+++.--++.||..+ +..++..+ +.+.+|+-+.+ +.....
T Consensus 9 DFDGTITl~Ds~~~itdtf~~---~-e~k---~l~~~vls~tiS~rd~~g~mf~~i----~~s~~Eile~l---lk~i~I 74 (220)
T COG4359 9 DFDGTITLNDSNDYITDTFGP---G-EWK---ALKDGVLSKTISFRDGFGRMFGSI----HSSLEEILEFL---LKDIKI 74 (220)
T ss_pred cCCCceEecchhHHHHhccCc---h-HHH---HHHHHHhhCceeHHHHHHHHHHhc----CCCHHHHHHHH---Hhhccc
Confidence 568999999988888653321 1 333 344444567788554 33444433 45556665553 554544
Q ss_pred CCCCcccHHHHHHHHHhCh
Q psy17871 155 DDDGALSFAEFELFIEKSQ 173 (189)
Q Consensus 155 ~~dg~I~~~eF~~~~~~~~ 173 (189)
+ =.|.+|..++..+.
T Consensus 75 d----p~fKef~e~ike~d 89 (220)
T COG4359 75 D----PGFKEFVEWIKEHD 89 (220)
T ss_pred C----ccHHHHHHHHHHcC
Confidence 3 35888998888643
No 216
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=23.03 E-value=2.5e+02 Score=19.00 Aligned_cols=68 Identities=18% Similarity=0.333 Sum_probs=41.6
Q ss_pred HHHHHHHHhcCCC--CCcccHHHHHHHHHHHhC------CCCCCH-------HHHHHHHHHHHHHcCCCCCCcccHHHHH
Q psy17871 102 KAEHAFRIFDFDG--DDMLGMTDLKQIIDRLTG------THHLSD-------NDIQHLIQNILDEADLDDDGALSFAEFE 166 (189)
Q Consensus 102 ~l~~~F~~~D~~~--~G~I~~~el~~~l~~~~~------~~~~~~-------~e~~~~i~~~~~~~d~~~dg~I~~~eF~ 166 (189)
.+..+|+....+. +..|+..++..+|..+.. + .... .-++-++.-++..+|+...|.|+--.|.
T Consensus 42 ~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p-~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~K 120 (127)
T PF09068_consen 42 NVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLP-TLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFK 120 (127)
T ss_dssp HHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHST-TS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHH
T ss_pred HHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCC-CCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHH
Confidence 4567777765544 467999999999988751 1 2121 2234445556888899999999988887
Q ss_pred HHHH
Q psy17871 167 LFIE 170 (189)
Q Consensus 167 ~~~~ 170 (189)
-++.
T Consensus 121 vaL~ 124 (127)
T PF09068_consen 121 VALI 124 (127)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 217
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=22.48 E-value=1.1e+02 Score=14.91 Aligned_cols=15 Identities=13% Similarity=0.147 Sum_probs=10.2
Q ss_pred CCcccHHHHHHHHHH
Q psy17871 115 DDMLGMTDLKQIIDR 129 (189)
Q Consensus 115 ~G~I~~~el~~~l~~ 129 (189)
.|.||.+|+.+.-..
T Consensus 14 ~G~IseeEy~~~k~~ 28 (31)
T PF09851_consen 14 KGEISEEEYEQKKAR 28 (31)
T ss_pred cCCCCHHHHHHHHHH
Confidence 477888887765543
No 218
>PF02864 STAT_bind: STAT protein, DNA binding domain; InterPro: IPR013801 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the DNA-binding domain, which has an immunoglobulin-like structural fold.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction, 0005634 nucleus; PDB: 1YVL_A 1BF5_A 1Y1U_B 3CWG_B 1BG1_A.
Probab=22.10 E-value=1e+02 Score=23.74 Aligned_cols=65 Identities=11% Similarity=0.110 Sum_probs=41.6
Q ss_pred CcccHHHHHHHHHH-----HhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhChhHHhhhhhhhhhh
Q psy17871 116 DMLGMTDLKQIIDR-----LTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQDFAKWTSIQREYI 186 (189)
Q Consensus 116 G~I~~~el~~~l~~-----~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~~~~~~~~~~~~~~ 186 (189)
..++-.+|..+|+. .+. +++++.+.-+.++++..-....++.|++.+|++-- .|. ..|+++.|++
T Consensus 177 ~~v~W~ql~~~L~~~F~~~~~R--~L~~~~L~~L~~Kl~~~~~~~~~~~isw~~F~Ke~--lp~--~~ftFW~Wf~ 246 (254)
T PF02864_consen 177 PKVPWPQLSEALSWQFSSETGR--GLTDEQLQYLAEKLFGQNSSYNNMLISWSQFCKEN--LPG--RNFTFWEWFD 246 (254)
T ss_dssp SEEEHHHHHHHHHHHHHHHSS------HHHHHHHHHHHHTSSS-GCC-EEEHHHHHTSB---TT--SSSBHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhCC--CCCHHHHHHHHHHHhCCcccCCCceeEHHHhhhcc--CCC--CCCchHHHHH
Confidence 45677888888864 355 89999999998777766665567899999997642 232 3466666654
No 219
>PF01799 Fer2_2: [2Fe-2S] binding domain; InterPro: IPR002888 The [2Fe-2S] binding domain is found in a range of enzymes including dehydrogenases, oxidases and oxidoreductases. The aldehyde oxido-reductase (Mop) from the sulphate reducing anaerobic Gram-negative bacterium Desulfovibrio gigas is a homodimer of 907 amino acid residues subunits and is a member of the xanthine oxidase family. The protein contains a molybdopterin cofactor (Mo-co) and two different [2Fe-2S] centres. It is folded into four domains of which the first two bind the iron sulphur centres and the last two are involved in Mo-co binding. Mo-co is a molybdenum molybdopterin cytosine dinucleotide. Molybdopterin forms a tricyclic system with the pterin bicycle annealed to a pyran ring. The molybdopterin dinucleotide is deeply buried in the protein. The cis-dithiolene group of the pyran ring binds the molybdenum, which is coordinated by three more (oxygen) ligands [].; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 2E3T_A 1WYG_A 3AN1_B 2E1Q_C 2CKJ_A 3B9J_I 3NVY_J 1FO4_B 3NRZ_J 3AM9_A ....
Probab=22.05 E-value=1.3e+02 Score=18.31 Aligned_cols=59 Identities=12% Similarity=0.098 Sum_probs=34.9
Q ss_pred HHH-HHHHHHhhCCCCCCCCCCCccchhhhhc---ccccccCChHHHHHHHhcCCCCCCccHHHHHHH
Q psy17871 26 EIL-AHQKFKSLAPEKVGHNKNAKLPMTKILL---YPQLRVNPFGDRICHIFSSSHDGDCTFEDFLDM 89 (189)
Q Consensus 26 e~~-~~~~F~~~d~~~~~~~~~g~i~~~e~~~---l~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~ 89 (189)
++. +.+.|....... .|+-++.-+.. +..-...++..++.+.++.+--.--.|..++..
T Consensus 10 ~~~~iq~af~~~~a~Q-----CGfCtpG~im~~~~ll~~~~~p~~~ei~~al~gnlCRCTgY~~I~~A 72 (75)
T PF01799_consen 10 ELHPIQQAFVEHGAVQ-----CGFCTPGMIMAAYALLRRNPDPTEEEIREALSGNLCRCTGYRPIVEA 72 (75)
T ss_dssp B--HHHHHHHHTT--S-----SSSSHHHHHHHHHHHHHHSSS-CHHHHHHHTTTS--SSSTSHHHHHH
T ss_pred CcCHHHHHHHHhCCCc-----CCcchHHHHHHHHHHhhcccchhhHHHHHHHHcCccCCCCcHHHHHH
Confidence 445 778888888777 88888887766 333345778888888887654333445554443
No 220
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=21.66 E-value=1.9e+02 Score=19.48 Aligned_cols=55 Identities=4% Similarity=-0.011 Sum_probs=31.8
Q ss_pred cccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhChhHHhh
Q psy17871 117 MLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQDFAKW 178 (189)
Q Consensus 117 ~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~~~~~~ 178 (189)
.+|.+||..++..++. +.-++. -...++..+.+. ..++-++.+.+|..+|.+++.
T Consensus 37 p~t~~eL~~~l~~~g~-----~~lin~-~~~~~r~l~~~~-~~ls~~e~i~lm~~~P~LIKR 91 (126)
T TIGR01616 37 PWHADTLRPYFGNKPV-----GSWFNR-AAPRVKSGEVNP-DSIDEASALALMVSDPLLIRR 91 (126)
T ss_pred CcCHHHHHHHHHHcCH-----HHHHhc-cchHhhhCCCCc-ccCCHHHHHHHHHhCcCeEeC
Confidence 4788888888876431 010000 000134444333 357889999999999987643
No 221
>TIGR00987 himA integration host factor, alpha subunit. This protein forms a site-specific DNA-binding heterodimer with the integration host factor beta subunit. It is closely related to the DNA-binding protein HU.
Probab=21.59 E-value=1.1e+02 Score=19.30 Aligned_cols=45 Identities=16% Similarity=0.336 Sum_probs=25.5
Q ss_pred ccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcC--CCCCCcccHHHH
Q psy17871 118 LGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEAD--LDDDGALSFAEF 165 (189)
Q Consensus 118 I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d--~~~dg~I~~~eF 165 (189)
++..||...+.... .++..+++.+++.++..+. ....+.|.+.+|
T Consensus 2 mtk~eli~~ia~~~---~~s~~~v~~vv~~~~~~i~~~L~~g~~V~l~gf 48 (96)
T TIGR00987 2 LTKAEMSEYLFDEL---GLSKREAKELVELFFEEIRRALENGEQVKLSGF 48 (96)
T ss_pred CCHHHHHHHHHHHh---CcCHHHHHHHHHHHHHHHHHHHHcCCeEEecCC
Confidence 56777777775532 4777777666666555542 223334554444
No 222
>COG4860 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.32 E-value=1.9e+02 Score=20.16 Aligned_cols=34 Identities=26% Similarity=0.315 Sum_probs=25.6
Q ss_pred CcccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcC
Q psy17871 116 DMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEAD 153 (189)
Q Consensus 116 G~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d 153 (189)
=.++.++|..++... -++++++++..+++-+...
T Consensus 92 f~~Sl~dL~dii~~~----f~sdeev~ey~~ei~~l~e 125 (170)
T COG4860 92 FMGSLSDLADIIYAA----FLSDEEVKEYEDEIKALME 125 (170)
T ss_pred EEEeHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHH
Confidence 457888999998775 5788888887777666654
No 223
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=21.22 E-value=30 Score=17.03 Aligned_cols=17 Identities=18% Similarity=0.476 Sum_probs=12.9
Q ss_pred HHHHcCCCCCCcccHHH
Q psy17871 148 ILDEADLDDDGALSFAE 164 (189)
Q Consensus 148 ~~~~~d~~~dg~I~~~e 164 (189)
++..-|.+++.+|+.++
T Consensus 4 LL~qEDTDgn~qITIeD 20 (30)
T PF07492_consen 4 LLEQEDTDGNFQITIED 20 (30)
T ss_pred HhhccccCCCcEEEEec
Confidence 36778888888887654
No 224
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=21.19 E-value=83 Score=18.84 Aligned_cols=31 Identities=19% Similarity=0.180 Sum_probs=19.4
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhC
Q psy17871 102 KAEHAFRIFDFDGDDMLGMTDLKQIIDRLTG 132 (189)
Q Consensus 102 ~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~ 132 (189)
.+..+...++....--+-..+++.++..++.
T Consensus 24 ~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ 54 (73)
T PF12631_consen 24 HLEDALEALENGLPLDLVAEDLREALESLGE 54 (73)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 4566666666555555667788888877653
No 225
>PF13075 DUF3939: Protein of unknown function (DUF3939)
Probab=21.05 E-value=29 Score=23.93 Aligned_cols=47 Identities=9% Similarity=0.258 Sum_probs=27.1
Q ss_pred cccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCh
Q psy17871 117 MLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQ 173 (189)
Q Consensus 117 ~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d~~~dg~I~~~eF~~~~~~~~ 173 (189)
.||.+|++++.+.... .++... ....=.+.|..|+|+.....+-..|
T Consensus 9 ~vTldevr~Av~~f~~--~lp~gi--------~rt~lv~~d~~iD~~~L~~yL~g~p 55 (140)
T PF13075_consen 9 DVTLDEVRRAVHQFEE--DLPKGI--------NRTILVNDDQSIDFERLAPYLGGIP 55 (140)
T ss_pred cccHHHHHHHHHHHHH--hCccCC--------ceEEEEcCCceecHHHHhhhcCCCC
Confidence 5888999998888755 333221 1222245556666666665554433
No 226
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=21.02 E-value=2.8e+02 Score=19.75 Aligned_cols=13 Identities=15% Similarity=0.419 Sum_probs=6.7
Q ss_pred cHHHHHHHHhhcC
Q psy17871 82 TFEDFLDMMSVFS 94 (189)
Q Consensus 82 ~~~ef~~~~~~~~ 94 (189)
+-+||++.+....
T Consensus 2 ~k~efL~~L~~~L 14 (181)
T PF08006_consen 2 NKNEFLNELEKYL 14 (181)
T ss_pred CHHHHHHHHHHHH
Confidence 3455665555433
No 227
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=20.90 E-value=2.3e+02 Score=17.75 Aligned_cols=26 Identities=12% Similarity=0.291 Sum_probs=19.5
Q ss_pred cccHHHHHHHHHHHhCCCCCCHHHHHHH
Q psy17871 117 MLGMTDLKQIIDRLTGTHHLSDNDIQHL 144 (189)
Q Consensus 117 ~I~~~el~~~l~~~~~~~~~~~~e~~~~ 144 (189)
.|+.+++.++...... .++++++..+
T Consensus 2 ~i~~e~i~~la~La~l--~l~~ee~~~~ 27 (95)
T PRK00034 2 AITREEVKHLAKLARL--ELSEEELEKF 27 (95)
T ss_pred CCCHHHHHHHHHHhCC--CCCHHHHHHH
Confidence 3778888888877777 7888776554
No 228
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=20.80 E-value=2.8e+02 Score=19.69 Aligned_cols=59 Identities=10% Similarity=0.091 Sum_probs=43.8
Q ss_pred HH-HHHHHHhhCCCCCCCCCCCccchhhhhc---ccccccCChHHHHHHHhcCCCCCCccHHHHHHHH
Q psy17871 27 IL-AHQKFKSLAPEKVGHNKNAKLPMTKILL---YPQLRVNPFGDRICHIFSSSHDGDCTFEDFLDMM 90 (189)
Q Consensus 27 ~~-~~~~F~~~d~~~~~~~~~g~i~~~e~~~---l~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~ 90 (189)
++ +.+.|...+... .|+-+...+.. |......|+.++|.+.+..|--.--.|..++..+
T Consensus 85 l~~vQ~Af~e~~~~Q-----CGyCtpG~Imsa~~lL~~~~~ps~~eI~~~lsGnlCRCt~Y~~I~~Ai 147 (156)
T COG2080 85 LHPVQQAFLEHDAFQ-----CGYCTPGQIMSATALLDRNPAPTDEEIREALSGNLCRCTGYQNIVAAI 147 (156)
T ss_pred cCHHHHHHHHcCCCc-----CCCCcHHHHHHHHHHHHhCCCCCHHHHHHHHhcCccccCCHHHHHHHH
Confidence 45 788899999888 99999999888 4455566788888888876654445566666554
No 229
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=20.67 E-value=1.9e+02 Score=16.77 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=10.0
Q ss_pred cccHHHHHHHHHHHhCCCCCCHHHHH
Q psy17871 117 MLGMTDLKQIIDRLTGTHHLSDNDIQ 142 (189)
Q Consensus 117 ~I~~~el~~~l~~~~~~~~~~~~e~~ 142 (189)
.++.+|...++..+... .+++.++-
T Consensus 14 ~Ls~~e~~~~~~~i~~g-~~s~~qia 38 (66)
T PF02885_consen 14 DLSREEAKAAFDAILDG-EVSDAQIA 38 (66)
T ss_dssp ---HHHHHHHHHHHHTT-SS-HHHHH
T ss_pred CCCHHHHHHHHHHHHcC-CCCHHHHH
Confidence 45555555555554332 44444443
No 230
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=20.59 E-value=1e+02 Score=17.70 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=15.4
Q ss_pred CCCHHHHHHHHhhcCCCHHHHH
Q psy17871 7 QFTEEELQDYEDLTYFTKKEIL 28 (189)
Q Consensus 7 ~l~~~~~~~~~~~~~~~~~e~~ 28 (189)
.|.+.++..|...++++.+++.
T Consensus 22 ~L~E~DL~~L~~kS~ms~qqVr 43 (56)
T PF11569_consen 22 QLQEEDLDELCDKSRMSYQQVR 43 (56)
T ss_dssp ---TTHHHHHHHHTT--HHHHH
T ss_pred CccHhhHHHHHHHHCCCHHHHH
Confidence 4778899999999999999985
No 231
>PRK00285 ihfA integration host factor subunit alpha; Reviewed
Probab=20.32 E-value=1.3e+02 Score=19.16 Aligned_cols=46 Identities=20% Similarity=0.363 Sum_probs=27.4
Q ss_pred cccHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcC--CCCCCcccHHHH
Q psy17871 117 MLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEAD--LDDDGALSFAEF 165 (189)
Q Consensus 117 ~I~~~el~~~l~~~~~~~~~~~~e~~~~i~~~~~~~d--~~~dg~I~~~eF 165 (189)
.++..||...+.... .++..++..+++.++..+. ....+.|.+.+|
T Consensus 2 tmtk~el~~~ia~~~---~~s~~~v~~vl~~~~~~i~~~L~~g~~V~l~gf 49 (99)
T PRK00285 2 TLTKADLAEALFEKV---GLSKREAKELVELFFEEIRDALENGEQVKLSGF 49 (99)
T ss_pred CcCHHHHHHHHHHHh---CcCHHHHHHHHHHHHHHHHHHHHcCCeEEEcCC
Confidence 467788877776532 4777777777666555552 223334555544
No 232
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=20.29 E-value=2e+02 Score=16.78 Aligned_cols=23 Identities=17% Similarity=0.537 Sum_probs=18.4
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHH
Q psy17871 104 EHAFRIFDFDGDDMLGMTDLKQII 127 (189)
Q Consensus 104 ~~~F~~~D~~~~G~I~~~el~~~l 127 (189)
..||.+| .++.|.|+..++...|
T Consensus 10 dkA~e~y-~~~~g~i~lkdIA~~L 32 (60)
T PF10668_consen 10 DKAFEIY-KESNGKIKLKDIAEKL 32 (60)
T ss_pred HHHHHHH-HHhCCCccHHHHHHHH
Confidence 4677777 5688999999988777
No 233
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=20.21 E-value=1.2e+02 Score=22.42 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=21.0
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHH
Q psy17871 105 HAFRIFDFDGDDMLGMTDLKQIIDRL 130 (189)
Q Consensus 105 ~~F~~~D~~~~G~I~~~el~~~l~~~ 130 (189)
.+..-+|.|++|.++.+|+..+....
T Consensus 54 ~ll~~~D~~~dg~~~~~el~~l~~~~ 79 (212)
T PF06226_consen 54 YLLEGLDKDGDGKLDPEELAALAKEI 79 (212)
T ss_pred HHHHhhhhcccCCCCHHHHHHHHHHH
Confidence 34447899999999999999888654
No 234
>PF10897 DUF2713: Protein of unknown function (DUF2713); InterPro: IPR020404 This entry contains proteins with no known function. In some organisms this represents the C-terminal domain of a fusion protein with YjbL.
Probab=20.09 E-value=2e+02 Score=21.31 Aligned_cols=42 Identities=24% Similarity=0.344 Sum_probs=29.9
Q ss_pred CCCccHHHHHHHHhhcCCCC-----------ChhhHHHHHHHHhcCCCCCccc
Q psy17871 78 DGDCTFEDFLDMMSVFSESA-----------PKPVKAEHAFRIFDFDGDDMLG 119 (189)
Q Consensus 78 ~g~i~~~ef~~~~~~~~~~~-----------~~~~~l~~~F~~~D~~~~G~I~ 119 (189)
.|.++|..++.-+..+.... ...+.+...-+.||++.+|.|-
T Consensus 175 ~geldFn~iL~~Mk~~~~Egk~d~~~iTKM~~Aa~kLI~F~qSfDPdSte~I~ 227 (246)
T PF10897_consen 175 KGELDFNDILDKMKLQVNEGKLDPDIITKMRDAAPKLIKFVQSFDPDSTEPIK 227 (246)
T ss_pred cCCCcHHHHHHHHHHhhccCCcCcHHHHHHHHhhHHHHHHHHhcCCCCcCcee
Confidence 46899999999887754322 1123566777889999999875
Done!