RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17871
(189 letters)
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 156 bits (395), Expect = 2e-48
Identities = 80/185 (43%), Positives = 124/185 (67%), Gaps = 8/185 (4%)
Query: 1 MGQSESQFTEEELQDYEDLTYFTKKEILA-HQKFKSLAPEKVG---HNKNAKLPMTKILL 56
MG S S+ ++E L +Y+DLT+ TK+EIL H++F L P++ + A++P +IL
Sbjct: 24 MGGSGSRLSKELLAEYQDLTFLTKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILS 83
Query: 57 YPQLRVNPFGDRICHIFSSSH-DGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGD 115
P+L+ NPF +RIC +FS+S +FEDFLD++SVFS++A +K+ +AFRIFDFD D
Sbjct: 84 LPELKANPFKERICRVFSTSPAKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDD 143
Query: 116 DMLGMTDLKQIIDRLTGTH---HLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKS 172
L DL ++++ LTG LS ++++ LI NIL+E+D+D DG ++ +EF+ I +S
Sbjct: 144 GTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQHVISRS 203
Query: 173 QDFAK 177
DFA
Sbjct: 204 PDFAS 208
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 144 bits (364), Expect = 3e-44
Identities = 76/177 (42%), Positives = 119/177 (67%), Gaps = 8/177 (4%)
Query: 9 TEEELQDYEDLTYFTKKEILA-HQKFKSLAPEKVG---HNKNAKLPMTKILLYPQLRVNP 64
++E L +Y+DLT+ TK+EIL H++F L P++ + A++P +IL P+L+ NP
Sbjct: 1 SKELLAEYQDLTFLTKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILSLPELKANP 60
Query: 65 FGDRICHIFSSS-HDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDL 123
F +RIC +FS+S +FEDFLD++SVFS++A +K+ +AFRIFDFD D L DL
Sbjct: 61 FKERICRVFSTSPAKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDL 120
Query: 124 KQIIDRLTGTH---HLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQDFAK 177
++++ LTG LS ++++ LI NIL+E+D+D DG ++ +EF+ I +S DFA
Sbjct: 121 SRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQHVISRSPDFAS 177
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 137 bits (346), Expect = 3e-41
Identities = 47/189 (24%), Positives = 84/189 (44%), Gaps = 12/189 (6%)
Query: 1 MGQSESQ---------FTEEELQDYEDLTYFTKKEILA-HQKFKSLAPEKVGHNKNAKLP 50
MG S S+ E+ + +T FT +E+ A ++ FK L+ + K
Sbjct: 1 MGCSVSKKKKKNAMRPPGYEDPELLASVTPFTVEEVEALYELFKKLSSSIIDDGLIHKEE 60
Query: 51 MTKILLYPQLRVNPFGDRICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIF 110
L + R N F DRI +F +G F +F+ + VF SAP K + AF+++
Sbjct: 61 FQLALFRNRNRRNLFADRIFDVFDVKRNGVIEFGEFVRSLGVFHPSAPVHEKVKFAFKLY 120
Query: 111 DFDGDDMLGMTDLKQIIDRLTGTHH--LSDNDIQHLIQNILDEADLDDDGALSFAEFELF 168
D + +LK+++ L LS++ I+ ++ +AD +DG + E++ F
Sbjct: 121 DLRQTGFIEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQADRKNDGKIDIDEWKDF 180
Query: 169 IEKSQDFAK 177
+ + K
Sbjct: 181 VSLNPSLIK 189
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 136 bits (344), Expect = 1e-40
Identities = 40/183 (21%), Positives = 76/183 (41%), Gaps = 3/183 (1%)
Query: 3 QSESQFTEEELQDYEDLTYFTKKEILA-HQKFKSLAPEKVGHNKNAKLPMTKILLYPQLR 61
+ + + T F+ EI A ++ FK ++ + K L +
Sbjct: 23 LYKQSGGLGDPELLARDTVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKK 82
Query: 62 VNPFGDRICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMT 121
+ F DR+ +F + H+G FE+F +SVF +AP K +F+++D +
Sbjct: 83 ESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIHFSFQLYDLKQQGFIERQ 142
Query: 122 DLKQIIDRLTGTHH--LSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQDFAKWT 179
++KQ++ L D I+ +I +EAD DG + E+ + + K
Sbjct: 143 EVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLKNM 202
Query: 180 SIQ 182
++Q
Sbjct: 203 TLQ 205
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 130 bits (329), Expect = 1e-38
Identities = 52/189 (27%), Positives = 83/189 (43%), Gaps = 23/189 (12%)
Query: 1 MGQSES-QFTEEELQDYEDLTYFTKKEILA-HQKFKSLAPEKVGHNKNAKLPMTKILLYP 58
MG S +EEL++ + T F+ +I + +F SL +N L P
Sbjct: 1 MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDK-----GENGTLSREDFQRIP 55
Query: 59 QLRVNPFGDRICHIFSSSHDGDCTFEDFLDMMSVFSESAP---------------KPVKA 103
+L +NP GDRI + F S + F F+ ++ F + K
Sbjct: 56 ELAINPLGDRIINAFFSEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKL 115
Query: 104 EHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFA 163
AFR++D D DD + +L Q++ + G ++SD + + + EAD D D A+SF
Sbjct: 116 HFAFRLYDLDKDDKISRDELLQVLRMMVGV-NISDEQLGSIADRTIQEADQDGDSAISFT 174
Query: 164 EFELFIEKS 172
EF +EK
Sbjct: 175 EFVKVLEKV 183
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 126 bits (317), Expect = 4e-37
Identities = 41/184 (22%), Positives = 74/184 (40%), Gaps = 10/184 (5%)
Query: 1 MGQSESQFTEEELQDYEDLTYFTKKEILA-HQKFKSLAPEKVGHNKNAKLPMTKILLYPQ 59
MG+S S+ E +++ TYFT+KE+ ++ F P G A +P
Sbjct: 1 MGKSNSKLKPEVVEELTRKTYFTEKEVQQWYKGFIKDCPS--GQLDAAGFQKIYKQFFPF 58
Query: 60 LRVNPFGDRICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLG 119
F + ++F + DG F +F+ +SV S K AF+++D D D +
Sbjct: 59 GDPTKFATFVFNVFDENKDGRIEFSEFIQALSVTS-RGTLDEKLRWAFKLYDLDNDGYIT 117
Query: 120 MTDLKQIIDRLTGTH------HLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQ 173
++ I+D + +N + + I D + DG L+ EF+ +
Sbjct: 118 RNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKNADGKLTLQEFQEGSKADP 177
Query: 174 DFAK 177
+
Sbjct: 178 SIVQ 181
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 124 bits (312), Expect = 2e-36
Identities = 34/184 (18%), Positives = 71/184 (38%), Gaps = 10/184 (5%)
Query: 1 MGQSESQFTEEELQDYEDLTYFTKKEILA-HQKFKSLAPEKVGHNKNAKLPMTKILLYPQ 59
MG S+ ++++L + TYF ++EI H+ F P G +P
Sbjct: 1 MGAKTSKLSKDDLTCLKQSTYFDRREIQQWHKGFLRDCPS--GQLAREDFVKIYKQFFPF 58
Query: 60 LRVNPFGDRICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLG 119
F + + +F ++G FE+F+ ++S S K AF ++D + D +
Sbjct: 59 GSPEDFANHLFTVFDKDNNGFIHFEEFITVLSTTS-RGTLEEKLSWAFELYDLNHDGYIT 117
Query: 120 MTDLKQIIDRLTGTH------HLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQ 173
++ I+ + + + + ++ I D ++DG ++ EF +
Sbjct: 118 FDEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNEDGYITLDEFREGSKVDP 177
Query: 174 DFAK 177
Sbjct: 178 SIIG 181
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 122 bits (307), Expect = 2e-35
Identities = 45/190 (23%), Positives = 78/190 (41%), Gaps = 24/190 (12%)
Query: 1 MGQSESQ-FTEEELQDYEDLTYFTKKEILA-HQKFKSLAPEKVGHNKNAKLPMTKILLYP 58
MG S + T F++ +L H +F++L NK L +
Sbjct: 1 MGSRSSHAAVIPDGDSIRRETGFSQASLLRLHHRFRALDR-----NKKGYLSRMDLQQIG 55
Query: 59 QLRVNPFGDRICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPV----------------K 102
L VNP GDRI F F F+ +++ F + K
Sbjct: 56 ALAVNPLGDRIIESFFPDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNK 115
Query: 103 AEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSF 162
+AF+++D D D + ++ Q++ + G +++ ++++ + EAD D DGA+SF
Sbjct: 116 LHYAFQLYDLDRDGKISRHEMLQVLRLMVG-VQVTEEQLENIADRTVQEADEDGDGAVSF 174
Query: 163 AEFELFIEKS 172
EF +EK
Sbjct: 175 VEFTKSLEKM 184
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 116 bits (291), Expect = 4e-33
Identities = 40/188 (21%), Positives = 75/188 (39%), Gaps = 10/188 (5%)
Query: 1 MGQSESQFTEEELQDYEDLTYFTKKEILA-HQKFKSLAPEKVGHNKNAKLPMTKILLYPQ 59
MG+ S+ E +QD + T FT+ EI ++ F P GH + +P
Sbjct: 1 MGKQNSKLRPEVMQDLLESTDFTEHEIQEWYKGFLRDCPS--GHLSMEEFKKIYGNFFPY 58
Query: 60 LRVNPFGDRICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLG 119
+ F + + F ++ DG F +F+ +SV S K + AF ++D DG+ +
Sbjct: 59 GDASKFAEHVFRTFDANGDGTIDFREFIIALSVTSR-GKLEQKLKWAFSMYDLDGNGYIS 117
Query: 120 MTDLKQIIDRLTGTHH------LSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQ 173
++ +I+ + ++ + + I + D + DG LS EF +
Sbjct: 118 KAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGAKSDP 177
Query: 174 DFAKWTSI 181
+
Sbjct: 178 SIVRLLQC 185
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 110 bits (277), Expect = 4e-31
Identities = 38/183 (20%), Positives = 82/183 (44%), Gaps = 10/183 (5%)
Query: 2 GQSESQFTEEELQDYEDLTYFTKKEILA-HQKFKSLAPEKVGHNKNAKLPMTKILLYPQL 60
G+S+S+ ++++LQD T F KKE+ ++ F P GH ++ +P
Sbjct: 2 GKSQSKLSQDQLQDLVRSTRFDKKELQQWYKGFFKDCPS--GHLNKSEFQKIYKQFFPFG 59
Query: 61 RVNPFGDRICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGM 120
+ F + + ++F + +G F++F+ +SV S K AF+++D D + ++
Sbjct: 60 DPSAFAEYVFNVFDADKNGYIDFKEFICALSVTSRGELN-DKLIWAFQLYDLDNNGLISY 118
Query: 121 TDLKQIIDRLTGTH------HLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQD 174
++ +I+D + ++ + + I + D + DG L+ EF ++
Sbjct: 119 DEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKDGQLTLEEFCEGSKRDPT 178
Query: 175 FAK 177
Sbjct: 179 IVS 181
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 111 bits (279), Expect = 6e-31
Identities = 36/184 (19%), Positives = 81/184 (44%), Gaps = 10/184 (5%)
Query: 1 MGQSESQFTEEELQDYEDLTYFTKKEILA-HQKFKSLAPEKVGHNKNAKLPMTKILLYPQ 59
+ + + E L+ E + FTKKE+ ++ FK+ P V + + K ++ +PQ
Sbjct: 40 LEMATVRHRPEALELLEAQSKFTKKELQILYRGFKNECPSGVVNEETFKEIYSQ--FFPQ 97
Query: 60 LRVNPFGDRICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLG 119
+ + + F + H+G +FEDF+ +S+ + K AF ++D + D +
Sbjct: 98 GDSTTYAHFLFNAFDTDHNGAVSFEDFIKGLSILLRGTVQ-EKLNWAFNLYDINKDGYIT 156
Query: 120 MTDLKQIIDRL------TGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQ 173
++ I+ + L ++ + ++ + D + DG ++ EF +K +
Sbjct: 157 KEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNKDGVVTIDEFIESCQKDE 216
Query: 174 DFAK 177
+ +
Sbjct: 217 NIMR 220
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 109 bits (275), Expect = 9e-31
Identities = 32/178 (17%), Positives = 72/178 (40%), Gaps = 10/178 (5%)
Query: 11 EELQDYEDLTYFTKKEILA-HQKFKSLAPEKVGHNKNAKLPMTKILLYPQLRVNPFGDRI 69
E L+ E T FTK+E+ ++ FK+ P V + + K + +P + + +
Sbjct: 4 EGLEQLEAQTNFTKRELQVLYRGFKNEXPSGVVNEETFKQIYAQF--FPHGDASTYAHYL 61
Query: 70 CHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDR 129
+ F ++ G FEDF+ +S+ K F ++D + D + ++ I+
Sbjct: 62 FNAFDTTQTGSVKFEDFVTALSILLRGTVH-EKLRWTFNLYDINKDGYINKEEMMDIVKA 120
Query: 130 LTGTH------HLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQDFAKWTSI 181
+ L ++ + + + D + DG ++ EF ++ + + +
Sbjct: 121 IYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESXQEDDNIMRSLQL 178
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 110 bits (277), Expect = 1e-30
Identities = 32/188 (17%), Positives = 73/188 (38%), Gaps = 10/188 (5%)
Query: 1 MGQSESQFTEEELQDYEDLTYFTKKEILA-HQKFKSLAPEKVGHNKNAKLPMTKILLYPQ 59
+ + E L+ E T FTK+E+ ++ FK+ P V + + K + P
Sbjct: 27 LEMTMVCHRPEGLEQLEAQTNFTKRELQVLYRGFKNECPSGVVNEETFKQIYAQFF--PH 84
Query: 60 LRVNPFGDRICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLG 119
+ + + + F ++ G FEDF+ +S+ K F ++D + D +
Sbjct: 85 GDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVH-EKLRWTFNLYDINKDGYIN 143
Query: 120 MTDLKQIIDRLTGTHH------LSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQ 173
++ I+ + L ++ + + + D + DG ++ EF ++
Sbjct: 144 KEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESCQEDD 203
Query: 174 DFAKWTSI 181
+ + +
Sbjct: 204 NIMRSLQL 211
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 109 bits (273), Expect = 3e-30
Identities = 34/187 (18%), Positives = 77/187 (41%), Gaps = 13/187 (6%)
Query: 1 MGQSES-QFTEEELQDYEDLTYFTKKEILA-HQKFKSLAPEKVGHNKNAKLPMTKILLYP 58
MG S+S ++E L++ + T F+++E+ + +Q F P G + +P
Sbjct: 8 MGNSKSGALSKEILEELQLNTKFSEEELCSWYQSFLKDCPT--GRITQQQFQSIYAKFFP 65
Query: 59 QLRVNPFGDRICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDML 118
+ + F S+ DG F++++ + + + + K E AF ++D DG+ +
Sbjct: 66 DTDPKAYAQHVFRSFDSNLDGTLDFKEYVIALHMTT-AGKTNQKLEWAFSLYDVDGNGTI 124
Query: 119 GMTDLKQIIDRLTG--------THHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIE 170
++ +I+ + +N + + I +DD L+ EF
Sbjct: 125 SKNEVLEIVMAIFKMITPEDVKLLPDDENTPEKRAEKIWKYFGKNDDDKLTEKEFIEGTL 184
Query: 171 KSQDFAK 177
+++ +
Sbjct: 185 ANKEILR 191
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 107 bits (267), Expect = 6e-29
Identities = 36/188 (19%), Positives = 76/188 (40%), Gaps = 10/188 (5%)
Query: 1 MGQSESQFTEEELQDYEDLTYFTKKEILA-HQKFKSLAPEKVGHNKNAKLPMTKILLYPQ 59
+ S + E L + T FTKKE+ + ++ FK+ P + KL ++ PQ
Sbjct: 67 LELSTVRHQPEGLDQLQAQTKFTKKELQSLYRGFKNECPTGLVDEDTFKLIYSQFF--PQ 124
Query: 60 LRVNPFGDRICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLG 119
+ + + F + +G FEDF+ +S+ K + AF ++D + D +
Sbjct: 125 GDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVH-EKLKWAFNLYDINKDGCIT 183
Query: 120 MTDLKQIIDRL------TGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQ 173
++ I+ + L ++ ++ + D + DG ++ EF +K +
Sbjct: 184 KEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQDGVVTIDEFLETCQKDE 243
Query: 174 DFAKWTSI 181
+ +
Sbjct: 244 NIMNSMQL 251
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 93.1 bits (232), Expect = 1e-24
Identities = 38/129 (29%), Positives = 68/129 (52%), Gaps = 1/129 (0%)
Query: 44 NKNAKLPMTKILLYPQLRVNPFGDRICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKA 103
+ + L + + + P+L+ NP R+ IF + +G+ F++F++ +S FS K K
Sbjct: 18 DNSGSLSVEEFMSLPELQQNPLVQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKL 77
Query: 104 EHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFA 163
AFRI+D D D + +L Q++ + G ++L D +Q ++ + AD D DG +SF
Sbjct: 78 RFAFRIYDMDKDGYISNGELFQVLKMMVG-NNLKDTQLQQIVDKTIINADKDGDGRISFE 136
Query: 164 EFELFIEKS 172
EF +
Sbjct: 137 EFCAVVGGL 145
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 73.3 bits (180), Expect = 1e-16
Identities = 30/178 (16%), Positives = 70/178 (39%), Gaps = 12/178 (6%)
Query: 1 MGQSESQFTEEELQDYEDLTYFTKKEILA-HQKFKSLAPEKVGHNKNAKLPMTKILLYPQ 59
MG +S ++ +E ++ F P + K +
Sbjct: 3 MGNGKSIAGDQ--------KAVPTQETHVWYRTFMMEYPSGLQTLHEFKTLLGL--QGLN 52
Query: 60 LRVNPFGDRICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLG 119
+ N D++ + F ++ DG F +F+ +++ + + K + F+++D DG+ +
Sbjct: 53 QKANKHIDQVYNTFDTNKDGFVDFLEFIAAVNLIMQEKME-QKLKWYFKLYDADGNGSID 111
Query: 120 MTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQDFAK 177
+L + + + + I + + D+++DG L+ EF + K QD +
Sbjct: 112 KNELLDMFMAVQALNGQQTLSPEEFINLVFHKIDINNDGELTLEEFINGMAKDQDLLE 169
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 70.6 bits (173), Expect = 1e-15
Identities = 30/165 (18%), Positives = 64/165 (38%), Gaps = 5/165 (3%)
Query: 15 DYEDLTYFTKKEILA-HQKFKSLAPEKVGHNKNAKLPMTKILLYPQLRVNPFGDRICHIF 73
D + + + E ++KF + P G + L N + +++ F
Sbjct: 4 DSKAVEELSATECHQWYKKFMTECPS--GQLTLYEFKQFFGLKNLSPSANKYVEQMFETF 61
Query: 74 SSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGT 133
+ DG F +++ +S+ + K F+++D DG+ + +L II +
Sbjct: 62 DFNKDGYIDFMEYVAALSLVLKGKVD-QKLRWYFKLYDVDGNGCIDRGELLNIIKAIRAI 120
Query: 134 HHL-SDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQDFAK 177
+ + + D+ D++ DG LS EF ++K +
Sbjct: 121 NRCNEAMTAEEFTNMVFDKIDINGDGELSLEEFMEGVQKDEVLLD 165
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 65.2 bits (159), Expect = 1e-13
Identities = 30/189 (15%), Positives = 65/189 (34%), Gaps = 19/189 (10%)
Query: 1 MGQSESQFTEEELQDYEDLTYFTKKEIL-AHQKFKSLAPEKVGHNKNAKLPMTKILLYPQ 59
MGQ QF+ EE ++ + ++ ++KF P K +
Sbjct: 1 MGQ---QFSWEEAEENGAVGAADAAQLQEWYKKFLEECPSGTLFMHEFKRFFK---VPDN 54
Query: 60 LRVNPFGDRICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLG 119
+ + + F ++ D F +++ +++ K + F+I+D D + +
Sbjct: 55 EEATQYVEAMFRAFDTNGDNTIDFLEYVAALNLVL-RGTLEHKLKWTFKIYDKDRNGCID 113
Query: 120 MTDLKQIIDRLTGTH-----------HLSDNDIQHLIQNILDEADLDDDGALSFAEFELF 168
+L I++ + + ++ I D + DG LS EF
Sbjct: 114 RQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFLLVDENGDGQLSLNEFVEG 173
Query: 169 IEKSQDFAK 177
+ + K
Sbjct: 174 ARRDKWVMK 182
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 55.0 bits (133), Expect = 2e-10
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Query: 78 DGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLS 137
+ +ED L +M+ + + F + ++ L++ L G +S
Sbjct: 17 KMETKYEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITAESLRRNSGIL-GIEGMS 75
Query: 138 DNDIQHLIQNILDEADLDDDGALSFAEF 165
D Q ++ E DLD DGAL+ EF
Sbjct: 76 KEDAQGMV----REGDLDGDGALNQTEF 99
Score = 25.4 bits (56), Expect = 8.1
Identities = 2/21 (9%), Positives = 7/21 (33%)
Query: 145 IQNILDEADLDDDGALSFAEF 165
+++L E + +
Sbjct: 5 EKSMLLETTSTTKMETKYEDM 25
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 55.0 bits (132), Expect = 3e-10
Identities = 18/88 (20%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 84 EDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHH------LS 137
E +++ H F++ D+DG+++L +L I + +S
Sbjct: 51 EHLEGVINKPEAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMS 110
Query: 138 DNDIQHLIQNILDEADLDDDGALSFAEF 165
++++ ++I +L + D ++DG + +AEF
Sbjct: 111 EDELINIIDGVLRDDDKNNDGYIDYAEF 138
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 54.1 bits (131), Expect = 7e-10
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 83 FEDFLDMMSVF-SESAPKPVKAEH---AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSD 138
F+DF+++M + + AFR FD +GD + ++L++ + L G H +
Sbjct: 66 FDDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRALLG-HQVGH 124
Query: 139 NDIQHLIQNILDEADLDDDGALSFAEF 165
DI+ +I + DL+ DG + F EF
Sbjct: 125 RDIEEII----RDVDLNGDGRVDFEEF 147
Score = 38.3 bits (90), Expect = 4e-04
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
AFR FD D D + DL + + G + ++ ++ L Q + +++ G + F +F
Sbjct: 16 AFREFDKDKDGYINCRDLGNCMRTM-G-YMPTEMELIELSQ----QINMNLGGHVDFDDF 69
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 52.2 bits (126), Expect = 4e-09
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 83 FEDFLDMMSVFSESAPKPVKAEH---AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDN 139
FE+FL MM + K E FRIFD + D + + +L +I+ H+++
Sbjct: 75 FEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATG--EHVTEE 132
Query: 140 DIQHLIQNILDEADLDDDGALSFAEF 165
DI+ L+ ++D ++DG + F EF
Sbjct: 133 DIEDLM----KDSDKNNDGRIDFDEF 154
Score = 38.3 bits (90), Expect = 4e-04
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
AF +FD DG + +L ++ L G + + ++ +I+ E D D G + F EF
Sbjct: 25 AFDMFDADGGGDISTKELGTVMRML-G-QNPTKEELDAIIE----EVDEDGSGTIDFEEF 78
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 52.2 bits (126), Expect = 4e-09
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 83 FEDFLDMMSVFSESAPKPVKAEH---AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDN 139
F++FL MM + K E FR+FD + D + + +LK ++ ++++
Sbjct: 74 FDEFLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATG--ETITED 131
Query: 140 DIQHLIQNILDEADLDDDGALSFAEF 165
DI+ L+ + D ++DG + + EF
Sbjct: 132 DIEELM----KDGDKNNDGRIDYDEF 153
Score = 34.5 bits (80), Expect = 0.008
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 106 AFRIFDFDGDD-MLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAE 164
AF IF +D + +L +++ L G + + ++Q +I E D D G + F E
Sbjct: 23 AFDIFVLGAEDGSISTKELGKVMRML-G-QNPTPEELQEMID----EVDEDGSGTVDFDE 76
Query: 165 F 165
F
Sbjct: 77 F 77
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 51.8 bits (125), Expect = 5e-09
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 10/101 (9%)
Query: 78 DGDCTFEDFLDMMSVFSESAPKPVKAE----HAFRIFDFDGDDMLGMTDLKQIIDRLTGT 133
+GD F+ F + + F P + + AFR++D +G+ + +++I+ L
Sbjct: 64 NGDIDFDSFKIIGARFLGEEVNPEQMQQELREAFRLYDKEGNGYISTDVMREILAELD-- 121
Query: 134 HHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQD 174
LS D+ +I DE D D G + F EF + +
Sbjct: 122 ETLSSEDLDAMI----DEIDADGSGTVDFEEFMGVMTGGDE 158
Score = 35.2 bits (82), Expect = 0.005
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Query: 106 AFRIFD-FDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAE 164
AFR F+ +G + + I++ L G + + I+ LI E D +G + F
Sbjct: 18 AFRDFETPEGSGRVSTDQIGIILEVL-G-IQQTKSTIRQLID----EFDPFGNGDIDFDS 71
Query: 165 F 165
F
Sbjct: 72 F 72
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 51.4 bits (124), Expect = 6e-09
Identities = 15/90 (16%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Query: 78 DGDCTFEDFLDMMSVFSESAPKPVKAE--HAFRIFDFDGDDMLGMTDLKQIIDRLTGTHH 135
FE FL M+ +++ + + FR+FD +G+ + +L+ ++ L
Sbjct: 62 SRRVDFETFLPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTL--GEK 119
Query: 136 LSDNDIQHLIQNILDEADLDDDGALSFAEF 165
+++ +++ ++ D +G +++ F
Sbjct: 120 MTEEEVETVL-----AGHEDSNGCINYEAF 144
Score = 35.3 bits (82), Expect = 0.004
Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
AF +FD GD + + ++ R G + ++ ++ ++ N ++D + F F
Sbjct: 15 AFELFDRVGDGKILYSQCGDVM-RALG-QNPTNAEVLKVLGNP--KSDELKSRRVDFETF 70
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 53.4 bits (128), Expect = 7e-09
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 78 DGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLS 137
+G F +FL MM+ + + AFR+FD DG+ + +L+ ++ L G L+
Sbjct: 362 NGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNL-G-EKLT 419
Query: 138 DNDIQHLIQNILDEADLDDDGALSFAEF 165
D ++ +I EAD+D DG +++ EF
Sbjct: 420 DEEVDEMI----READIDGDGQVNYEEF 443
Score = 41.4 bits (97), Expect = 7e-05
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 13/90 (14%)
Query: 83 FEDFLDMMSVFSESAPKPVKAE-------HAFRIFDFDGDDMLGMTDLKQIIDRLTGTHH 135
F++ +++ E + E AF +FD DGD + +L ++ R G +
Sbjct: 287 FKEDGNILGHKLEYNTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVM-RSLG-QN 344
Query: 136 LSDNDIQHLIQNILDEADLDDDGALSFAEF 165
++ ++Q +I E D D +G + F EF
Sbjct: 345 PTEAELQDMIN----EVDADGNGTIDFPEF 370
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 51.4 bits (124), Expect = 7e-09
Identities = 16/93 (17%), Positives = 40/93 (43%), Gaps = 11/93 (11%)
Query: 78 DGDCTFEDFLDMMSVFS---ESAPKPVKAE--HAFRIFDFDGDDMLGMTDLKQIIDRLTG 132
T + ++ V ++ K + AF++FD + + + DL+ ++ L
Sbjct: 55 ASSLTLDQITGLIEVNEKELDATTKAKTEDFVKAFQVFDKESTGKVSVGDLRYMLTGLG- 113
Query: 133 THHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
L+D ++ L+ ++D +G + + +F
Sbjct: 114 -EKLTDAEVDELL----KGVEVDSNGEIDYKKF 141
Score = 36.0 bits (84), Expect = 0.002
Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
F +FD G + L + R G ++ ++ +Q +I ++ L D +L+ +
Sbjct: 9 IFTLFDKKGQGAIAKDSLGDYL-RAIG-YNPTNQLVQDIINA---DSSLRDASSLTLDQI 63
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 52.1 bits (125), Expect = 8e-09
Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 18/98 (18%)
Query: 78 DGDCTFEDFLDMMSVFS----------ESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQII 127
ED+++ VF+ E + + + + + D DGD + + +LK ++
Sbjct: 95 VNGLLREDWVEANRVFAEAERERERRGEPSLIALLSNSYYDVLDDDGDGTVDVDELKTMM 154
Query: 128 DRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
+ ++AD D G L E
Sbjct: 155 KAF----DVPQEAAYTFF----EKADTDKSGKLERTEL 184
Score = 45.2 bits (107), Expect = 3e-06
Identities = 10/65 (15%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 104 EHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHL---IQNILDEADLDDDGAL 160
F FD D D + M ++ DR+ + +D ++ + ++ ++ L
Sbjct: 39 YKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEPVNGL 98
Query: 161 SFAEF 165
++
Sbjct: 99 LREDW 103
Score = 25.9 bits (57), Expect = 8.4
Identities = 14/108 (12%), Positives = 25/108 (23%), Gaps = 13/108 (12%)
Query: 77 HDGDCTFEDFLDMMSVF--------SESAPKPVKAEHAFRIFDFDGDDMLGMTD-----L 123
DG ++ L + F + + L D
Sbjct: 49 SDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEPVNGLLREDWVEANR 108
Query: 124 KQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEK 171
+ I L + D D D DG + E + ++
Sbjct: 109 VFAEAERERERRGEPSLIALLSNSYYDVLDDDGDGTVDVDELKTMMKA 156
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 51.3 bits (123), Expect = 1e-08
Identities = 13/98 (13%), Positives = 28/98 (28%), Gaps = 16/98 (16%)
Query: 78 DGDCTFEDFLDMMSVF----------SESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQII 127
+ + +++ +E + + F I D D + + + + K
Sbjct: 76 GVETDWPAYIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDEWKAYT 135
Query: 128 DRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
S D + D+D+ G L E
Sbjct: 136 KAAG--IIQSSEDCEETF----RVCDIDESGQLDVDEM 167
Score = 29.8 bits (67), Expect = 0.36
Identities = 4/66 (6%), Positives = 15/66 (22%), Gaps = 4/66 (6%)
Query: 104 EHAFRIFDFDGDDMLGMTDLKQIIDRLTGT---HHLSDNDIQHLIQNIL-DEADLDDDGA 159
+H F D + + + + ++ + A +
Sbjct: 19 KHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGGAGMKYGVE 78
Query: 160 LSFAEF 165
+ +
Sbjct: 79 TDWPAY 84
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 50.9 bits (122), Expect = 2e-08
Identities = 14/95 (14%), Positives = 31/95 (32%), Gaps = 12/95 (12%)
Query: 77 HDGDCTFEDFLDMM------SVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRL 130
+ E+ E A +++ + D D D + + + K + +
Sbjct: 72 PGVRISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAFLQAV 131
Query: 131 TGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
L+D+ + D + +G +S EF
Sbjct: 132 G--PDLTDDKAITCF----NTLDFNKNGQISRDEF 160
Score = 44.7 bits (106), Expect = 3e-06
Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 3/65 (4%)
Query: 104 EHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHL---IQNILDEADLDDDGAL 160
+ + D GD + D + I R+ LS + + D+ L +
Sbjct: 17 KTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGLAPGVRI 76
Query: 161 SFAEF 165
S E
Sbjct: 77 SVEEA 81
Score = 26.2 bits (58), Expect = 5.3
Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 9/101 (8%)
Query: 77 HDGDCTFEDFLDMMSVFSESAPKPVKAEHAFR-----IFDFDGDDMLGMTDLKQIIDRLT 131
DG + ED+ + ++ A + R + D G +++ T
Sbjct: 27 GDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGLAPGVRISVEEAAVNAT 86
Query: 132 GTHHLSDNDIQHLIQNILDEA----DLDDDGALSFAEFELF 168
+ + + + D D DG +S EF+ F
Sbjct: 87 DSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAF 127
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 51.2 bits (122), Expect = 2e-08
Identities = 18/114 (15%), Positives = 38/114 (33%), Gaps = 13/114 (11%)
Query: 67 DRICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKA-----------EHAFRIFDFDGD 115
D + IF + DG D ++++ + E F +D
Sbjct: 151 DAMMKIFDKNKDGRLDLNDLARILALQENFLLQFKMDASSQVERKRDFEKIFAHYDVSRT 210
Query: 116 DMLGMTDLKQIIDRL--TGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFEL 167
L ++ + + +S D+ + +L D++ DG + +E L
Sbjct: 211 GALEGPEVDGFVKDMMELVRPSISGGDLDKFRECLLTHCDMNKDGKIQKSELAL 264
Score = 47.8 bits (113), Expect = 4e-07
Identities = 18/112 (16%), Positives = 37/112 (33%), Gaps = 14/112 (12%)
Query: 78 DGDCT--FEDFLDMMSVFSESAPKPVKAEH----------AFRIFDFDGDDMLGMTDLKQ 125
D E+ +M+ E+ + E +R +D D + +LK
Sbjct: 69 TFDGRLQIEELANMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDADSSGYISAAELKN 128
Query: 126 IIDRLTGTH--HLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQDF 175
+ L H + N + ++ D + DG L + + ++F
Sbjct: 129 FLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLNDLARILALQENF 180
Score = 36.6 bits (84), Expect = 0.003
Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRL----TGTHHLSDNDIQHLIQNILDEADLDDDGALS 161
++ FD D + + +L + ++D +Q + ++ + D DG L
Sbjct: 16 IWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDATFDGRLQ 75
Query: 162 FAEF 165
E
Sbjct: 76 IEEL 79
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 50.3 bits (121), Expect = 2e-08
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 18/89 (20%)
Query: 83 FEDFLDMMSVFSESAPKPVKAEH------AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHL 136
FE+FL MM K + + AFR+FD D + + DL+++ L +L
Sbjct: 83 FEEFLTMM------TAKMGERDSREEILKAFRLFDDDNSGTITIKDLRRVAKELG--ENL 134
Query: 137 SDNDIQHLIQNILDEADLDDDGALSFAEF 165
++ ++Q +I EAD +DD + EF
Sbjct: 135 TEEELQEMI----AEADRNDDNEIDEDEF 159
Score = 38.3 bits (90), Expect = 4e-04
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
AF +FD DG + +LK + L G +I+ +I E D D G + F EF
Sbjct: 33 AFDLFDTDGSGTIDAKELKVAMRAL-G-FEPKKEEIKKMIS----EIDKDGSGTIDFEEF 86
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 50.3 bits (121), Expect = 3e-08
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 11/92 (11%)
Query: 77 HDGDCTFEDFLDMMSVFSESAPKPVKAEH---AFRIFDFDGDDMLGMTDLKQIIDRLTGT 133
G + DFL +K E F+ FD DG+ + + +LK+I R
Sbjct: 106 ASGQIHYTDFLAATIDKQ----TYLKKEVCLIPFKFFDIDGNGKISVEELKRIFGRDDIE 161
Query: 134 HHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
+ L D I ++L E DL+ DG + F EF
Sbjct: 162 NPLIDKA----IDSLLQEVDLNGDGEIDFHEF 189
Score = 36.4 bits (85), Expect = 0.002
Identities = 9/60 (15%), Positives = 23/60 (38%), Gaps = 6/60 (10%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
F D D L ++ + ++ + DI +++ + D + G + + +F
Sbjct: 62 IFIALDVDNSGTLSSQEILDGLKKIG--YQKIPPDIHQVLR----DIDSNASGQIHYTDF 115
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 49.7 bits (119), Expect = 3e-08
Identities = 16/94 (17%), Positives = 28/94 (29%), Gaps = 14/94 (14%)
Query: 78 DGDCTFEDFLDMMSVFSESAPKPVKA------EHAFRIFDFDGDDMLGMTDLKQIIDRLT 131
D T E+F+ P A + D DGD + + D + +
Sbjct: 69 DQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADTARALTAF- 127
Query: 132 GTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
+ ++ + D D DG + E
Sbjct: 128 ---GVPEDLARQAA----AALDTDGDGKVGETEI 154
Score = 42.4 bits (100), Expect = 1e-05
Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 9/73 (12%)
Query: 102 KAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDND---------IQHLIQNILDEA 152
+ F FD DG+ + +D + ++ + L Q + A
Sbjct: 5 RIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIA 64
Query: 153 DLDDDGALSFAEF 165
D D D ++ EF
Sbjct: 65 DRDGDQRITREEF 77
Score = 25.9 bits (57), Expect = 6.5
Identities = 16/110 (14%), Positives = 31/110 (28%), Gaps = 15/110 (13%)
Query: 77 HDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIF--------------DFDGDDMLGMTD 122
+G DF +++ ++ D DGD + +
Sbjct: 17 GNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIADRDGDQRITREE 76
Query: 123 LKQIIDR-LTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEK 171
+ L + + L AD D DGA++ A+ +
Sbjct: 77 FVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADTARALTA 126
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 49.5 bits (119), Expect = 4e-08
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 78 DGDCT--FEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHH 135
+G ++DF +M + + AF++FD D + + +L+++ L
Sbjct: 71 EGRHLMKYDDFYIVMGEKILKRDPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELG--ET 128
Query: 136 LSDNDIQHLIQNILDEADLDDDGALSFAEF 165
L+D +++ +I +E DLD DG ++ EF
Sbjct: 129 LTDEELRAMI----EEFDLDGDGEINENEF 154
Score = 38.7 bits (91), Expect = 3e-04
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
AF +FD + D L +LK + L G L +I LI E D + + + +F
Sbjct: 28 AFSLFDMNNDGFLDYHELKVAMKAL-G-FELPKREILDLID----EYDSEGRHLMKYDDF 81
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 50.6 bits (121), Expect = 6e-08
Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 12/89 (13%)
Query: 77 HDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHL 136
D F +++ + + DFD L +++++++
Sbjct: 236 ESDDVGFSEYVHLGLCLL-------VLRILYAFADFDKSGQLSKEEVQKVLEDA-HIPES 287
Query: 137 SDNDIQHLIQNILDEADLDDDGALSFAEF 165
+ +H D+DD +LS+ EF
Sbjct: 288 ARKKFEHQFS----VVDVDDSKSLSYQEF 312
Score = 42.5 bits (100), Expect = 3e-05
Identities = 13/89 (14%), Positives = 30/89 (33%), Gaps = 14/89 (15%)
Query: 77 HDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHL 136
G ++ + + + FR D + + L + ++ RL
Sbjct: 171 TKGRMSYITLVAVAN-------DLAALVADFRKIDTNSNGTLSRKEFREHFVRL------ 217
Query: 137 SDNDIQHLIQNILDEADLDDDGALSFAEF 165
D + + + AD D+ + F+E+
Sbjct: 218 -GFDKKSVQDALFRYADEDESDDVGFSEY 245
Score = 36.3 bits (84), Expect = 0.003
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 6/60 (10%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
F G DLKQ++ + + + ++ L + D G +S+
Sbjct: 127 LFLSSAVSGSGKFSFQDLKQVLAKYA--DTIPEGPLKKLFV----MVENDTKGRMSYITL 180
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 49.4 bits (118), Expect = 6e-08
Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 15/95 (15%)
Query: 78 DGDCTFEDFLDMMSVF-----SESAPKPVK--AEHAFRIFDFDGDDMLGMTDLKQIIDRL 130
DG T E F+ + S + + + + D + D + + + L
Sbjct: 72 DGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEFAAWLTAL 131
Query: 131 TGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
+S + ++ D + +G LS E
Sbjct: 132 ----GMSKAEAAEAF----NQVDTNGNGELSLDEL 158
Score = 41.7 bits (98), Expect = 3e-05
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 9/73 (12%)
Query: 102 KAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDND---------IQHLIQNILDEA 152
+ + F +DFDG+ L D ++ + L + EA
Sbjct: 8 RLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEA 67
Query: 153 DLDDDGALSFAEF 165
+ DG+L+ +F
Sbjct: 68 GVGSDGSLTEEQF 80
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 49.9 bits (119), Expect = 7e-08
Identities = 21/110 (19%), Positives = 43/110 (39%), Gaps = 8/110 (7%)
Query: 67 DRICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAE-------HAFRIFDFDGDDMLG 119
D + +F S++DG + ++ V K + AF ++D DG+ +
Sbjct: 150 DLMLKLFDSNNDGKLELTEMARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYID 209
Query: 120 MTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFI 169
+L ++ L + + DI ++ + L D G L + L +
Sbjct: 210 ENELDALLKDL-CEKNKQELDINNISTYKKNIMALSDGGKLYRTDLALIL 258
Score = 48.7 bits (116), Expect = 2e-07
Identities = 17/122 (13%), Positives = 36/122 (29%), Gaps = 10/122 (8%)
Query: 78 DGDCTFEDFLDMMSVFSESAPKPVKAEH--------AFRIFDFDGDDMLGMTDLKQIIDR 129
DG + ++ + +R +D D + +LK +
Sbjct: 72 DGKIGIVELAHVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEELKNFLKD 131
Query: 130 L--TGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQDFAKWTSIQREYIQ 187
L + D + +L D ++DG L E + ++F + +
Sbjct: 132 LLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELTEMARLLPVQENFLLKFQGIKMCGK 191
Query: 188 EL 189
E
Sbjct: 192 EF 193
Score = 40.6 bits (95), Expect = 1e-04
Identities = 16/83 (19%), Positives = 32/83 (38%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
+ FD DG L +L+ +I L + ++ ++ +D+ DDG + E
Sbjct: 21 IWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQRDDGKIGIVEL 80
Query: 166 ELFIEKSQDFAKWTSIQREYIQE 188
+ ++F Q+ E
Sbjct: 81 AHVLPTEENFLLLFRCQQLKSCE 103
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 48.6 bits (117), Expect = 7e-08
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 83 FEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQ 142
F DFL +M+ + AF++FD D + +LK++ L +L+D ++Q
Sbjct: 61 FGDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELG--ENLTDEELQ 118
Query: 143 HLIQNILDEADLDDDGALSFAEF 165
+I DEAD D DG +S EF
Sbjct: 119 EMI----DEADRDGDGEVSEQEF 137
Score = 39.0 bits (92), Expect = 2e-04
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
AF +FD DG + + +LK + L G +I+ +I E D + G ++F +F
Sbjct: 11 AFDLFDADGTGTIDVKELKVAMRAL-G-FEPKKEEIKKMIS----EIDKEGTGKMNFGDF 64
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 48.3 bits (116), Expect = 9e-08
Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 6/88 (6%)
Query: 78 DGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLS 137
G F FL M +AF FD + + L++++ + +
Sbjct: 53 PGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMG--DRFT 110
Query: 138 DNDIQHLIQNILDEADLDDDGALSFAEF 165
D ++ + EA +D G ++ EF
Sbjct: 111 DEEVDEMY----REAPIDKKGNFNYVEF 134
Score = 30.2 bits (69), Expect = 0.19
Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 11/70 (15%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
AF + D + D + DL ++ + G + +D ++ ++ + G ++F F
Sbjct: 12 AFNMIDQNRDGFIDKEDLHDMLASM-G-KNPTDEYLEGMMS--------EAPGPINFTMF 61
Query: 166 -ELFIEKSQD 174
+F EK
Sbjct: 62 LTMFGEKLNG 71
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 46.9 bits (112), Expect = 9e-08
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
Query: 83 FEDFLDMMSVFSESAPKPVKAE--HAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDND 140
+ L S+ ++ + E AFR+ D DG+ + +L+ ++ L L+D +
Sbjct: 12 SGENLYFQSLMKDTDSE---EEIREAFRVEDKDGNGYISAAELRHVMTNLG--EKLTDEE 66
Query: 141 IQHLIQNILDEADLDDDGALSFAEF 165
+ +I EAD+D DG +++ EF
Sbjct: 67 VDEMI----READIDGDGQVNYEEF 87
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 47.9 bits (115), Expect = 1e-07
Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 83 FEDFLDMMSVFSESAPKPVKA-EHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDI 141
F + ++ + K AFR D +G+ + +L+Q++ L G L+ +++
Sbjct: 57 LATFKTVYRKPIKTPTEQSKEMLDAFRALDKEGNGTIQEAELRQLLLNL-G-DALTSSEV 114
Query: 142 QHLIQNILDEADLDDDGALSFAEF 165
+ L+ E + DGA+++ F
Sbjct: 115 EELM----KEVSVSGDGAINYESF 134
Score = 28.6 bits (65), Expect = 0.80
Identities = 11/70 (15%), Positives = 28/70 (40%), Gaps = 10/70 (14%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
F+IFD D D + + +L + R G + ++ ++ + + + A F
Sbjct: 10 CFQIFDKDNDGKVSIEELGSAL-RSLG-KNPTNAELNTIKGQL-------NAKEFDLATF 60
Query: 166 -ELFIEKSQD 174
++ + +
Sbjct: 61 KTVYRKPIKT 70
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 47.9 bits (115), Expect = 1e-07
Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 6/83 (7%)
Query: 83 FEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQ 142
F +FL +M+ + + AF++FD DG+ ++ +L+ ++ L G L+D+++
Sbjct: 65 FPEFLSLMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNL-G-EKLTDDEVD 122
Query: 143 HLIQNILDEADLDDDGALSFAEF 165
+I EAD+D DG +++ EF
Sbjct: 123 EMI----READIDGDGHINYEEF 141
Score = 36.7 bits (86), Expect = 0.001
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
AF +FD DGD + +L ++ L G + ++ ++Q +I E D D +G + F EF
Sbjct: 15 AFALFDKDGDGTITTKELGTVMRSL-G-QNPTEAELQDMIN----EVDADGNGTIDFPEF 68
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 48.4 bits (116), Expect = 1e-07
Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 18/114 (15%)
Query: 78 DGDCTFEDFLDMMSVFSESAPKPVKAEH---AFRIFDFDGDDMLGMTDLKQIIDRLTGTH 134
G + +F+ ++ + E+ AF FD DG + + +++Q
Sbjct: 60 SGTIDYGEFIAATVHLNKLERE----ENLVSAFSYFDKDGSGYITLDEIQQACKDF---- 111
Query: 135 HLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQDFAKWTSIQREYIQE 188
L D I +I E D D+DG + + EF + K + I R +++
Sbjct: 112 GLDDIHIDDMI----KEIDQDNDGQIDYGEFAAMMRKRKG---NGGIGRRTMRK 158
Score = 36.8 bits (86), Expect = 0.001
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
F++ D D + +LK + R+ L +++I+ L+ D AD+D G + + EF
Sbjct: 15 LFKMIDTDNSGTITFDELKDGLKRVG--SELMESEIKDLM----DAADIDKSGTIDYGEF 68
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 48.4 bits (115), Expect = 1e-07
Identities = 11/115 (9%), Positives = 29/115 (25%), Gaps = 16/115 (13%)
Query: 59 QLRVNPFGDRICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHA--------FRIF 110
Q + + + D ++E++L M + F+
Sbjct: 55 QASLEDEWRDLKGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGM 114
Query: 111 DFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
D GD ++ + + + L D+ + + +
Sbjct: 115 DVSGDGIVDLEEFQNYCKNF----QLQCADVPAVY----NVITDGGKVTFDLNRY 161
Score = 36.8 bits (85), Expect = 0.002
Identities = 17/98 (17%), Positives = 38/98 (38%), Gaps = 10/98 (10%)
Query: 102 KAEHAFR-IFDFDGDDMLGMTDLKQIIDRLTGTHHLSDND---------IQHLIQNILDE 151
K + F D + D + D + ++ R + S +D ++ +++
Sbjct: 9 KIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGR 68
Query: 152 ADLDDDGALSFAEFELFIEKSQDFAKWTSIQREYIQEL 189
AD++ D +S+ E+ EK+ K + + Q
Sbjct: 69 ADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNR 106
Score = 26.8 bits (59), Expect = 3.3
Identities = 10/72 (13%), Positives = 19/72 (26%), Gaps = 3/72 (4%)
Query: 62 VNPFGDRICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMT 121
+ S DG E+F + F + + G +
Sbjct: 103 CQNRIPFLFKGMDVSGDGIVDLEEFQNYCKNFQLQ---CADVPAVYNVITDGGKVTFDLN 159
Query: 122 DLKQIIDRLTGT 133
K++ RL +
Sbjct: 160 RYKELYYRLLTS 171
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 48.3 bits (116), Expect = 1e-07
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Query: 78 DGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLS 137
+G F +FL MM+ + + AFR+FD DG+ + +L+ ++ L L+
Sbjct: 61 NGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLG--EKLT 118
Query: 138 DNDIQHLIQNILDEADLDDDGALSFAEF 165
D ++ +I EAD+D DG +++ EF
Sbjct: 119 DEEVDEMI----READIDGDGQVNYEEF 142
Score = 37.5 bits (88), Expect = 8e-04
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
AF +FD DGD + +L ++ L G + ++ ++Q +I E D D +G + F EF
Sbjct: 16 AFSLFDKDGDGTITTKELGTVMRSL-G-QNPTEAELQDMIN----EVDADGNGTIDFPEF 69
Score = 30.2 bits (69), Expect = 0.22
Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 3/41 (7%)
Query: 78 DGDCTFEDFLDMMSVF-SESAPKPVKAE--HAFRIFDFDGD 115
DG +E+F+ MM+ K + R
Sbjct: 134 DGQVNYEEFVQMMTAKGGGGGAAARKEVIRNKIRAIGKMAR 174
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 48.4 bits (116), Expect = 1e-07
Identities = 18/83 (21%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 83 FEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQ 142
+ +F+ + + K + AFR+FD D D + +L I+ +++ D+
Sbjct: 106 YTEFIAAALDRKQLSKKLIYC--AFRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVN 163
Query: 143 HLIQNILDEADLDDDGALSFAEF 165
++ ++ + D ++DG + F EF
Sbjct: 164 R-VKRMIRDVDKNNDGKIDFHEF 185
Score = 34.5 bits (80), Expect = 0.009
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 7/60 (11%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
F + D DG + LK+ +++ + + +LD+ D D G + + EF
Sbjct: 57 TFLVLDEDGKGYITKEQLKKGLEKD-------GLKLPYNFDLLLDQIDSDGSGKIDYTEF 109
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 47.5 bits (114), Expect = 2e-07
Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 15/91 (16%)
Query: 78 DGDCTFEDFLDMMSVFSESAPKPVKAEH---AFRIFDFDGDDMLGMTDLKQIIDRLTGTH 134
G +++F+ ++ + +H AF FD DG + +L+Q +
Sbjct: 77 SGTIDYKEFIAATLHLNKIERE----DHLFAAFTYFDKDGSGYITPDELQQACEEF---- 128
Query: 135 HLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
+ D I+ L+ + D D+DG + + EF
Sbjct: 129 GVEDVRIEELM----RDVDQDNDGRIDYNEF 155
Score = 37.5 bits (88), Expect = 8e-04
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
F + D D + +LK + R+ +L +++I L+Q AD+D+ G + + EF
Sbjct: 32 MFNMIDADKSGQITFEELKAGLKRVG--ANLKESEILDLMQ----AADVDNSGTIDYKEF 85
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 45.7 bits (109), Expect = 2e-07
Identities = 16/60 (26%), Positives = 29/60 (48%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
AF+ D +GD + +L+ + L LS + ++ ++ AD + DG +S EF
Sbjct: 12 AFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKISKEEF 71
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 47.5 bits (113), Expect = 3e-07
Identities = 14/97 (14%), Positives = 28/97 (28%), Gaps = 16/97 (16%)
Query: 77 HDGDCTFEDFLDMMSVFSESAPKP--------VKAEHAFRIFDFDGDDMLGMTDLKQIID 128
D T E++L M + +S K F + D GD+++ + +
Sbjct: 77 EDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYSTVYM 136
Query: 129 RLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
+ +D D ++ F
Sbjct: 137 SY----GIPKSDCDAAF----DTLSDGGKTMVTREIF 165
Score = 38.3 bits (89), Expect = 5e-04
Identities = 11/74 (14%), Positives = 28/74 (37%), Gaps = 10/74 (13%)
Query: 102 KAEHAFR-IFDFDGDDMLGMTDLKQIIDRLTGTHHLSDND---------IQHLIQNILDE 151
K F +D + D ++ D + I ++ H + ++ + +
Sbjct: 13 KILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKY 72
Query: 152 ADLDDDGALSFAEF 165
AD ++D ++ E+
Sbjct: 73 ADENEDEQVTKEEW 86
Score = 27.1 bits (60), Expect = 2.6
Identities = 12/114 (10%), Positives = 27/114 (23%), Gaps = 23/114 (20%)
Query: 77 HDGDCTFEDFLDMMSVFSESAPKPVKAEHA--------------FRIFDFDGDDMLGMTD 122
HDG ++DF + P + + D + D
Sbjct: 26 HDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKYADENED---EQVT 82
Query: 123 LKQIIDRLTGTHHLSDND------IQHLIQNILDEADLDDDGALSFAEFELFIE 170
++ + + + + + D D D + E+
Sbjct: 83 KEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYSTVYM 136
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 47.7 bits (114), Expect = 3e-07
Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 9/98 (9%)
Query: 77 HDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHL 136
+G + +F+ + + + AF+ FD DG + +L ++ G +
Sbjct: 100 RNGYIEYSEFVTVCMDKQLLLSR-ERLLAAFQQFDSDGSGKITNEELGRLF----GVTEV 154
Query: 137 SDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQD 174
D +L E D ++DG + F EF ++K D
Sbjct: 155 DDETWH----QVLQECDKNNDGEVDFEEFVEMMQKICD 188
Score = 36.1 bits (84), Expect = 0.002
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRL-----TGTHHLSDNDIQHLIQNILDEADLDDDGAL 160
FR D +GD L +L + +L L + I+ + +IL D D +G +
Sbjct: 45 IFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHILQSVDFDRNGYI 104
Query: 161 SFAEF 165
++EF
Sbjct: 105 EYSEF 109
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 47.0 bits (112), Expect = 3e-07
Identities = 19/93 (20%), Positives = 29/93 (31%), Gaps = 12/93 (12%)
Query: 77 HDGDCTFEDFLDMMS--VFSESAPKPVKA--EHAFRIFDFDGDDMLGMTDLKQIIDRLTG 132
F++ M V + A V+ FR D + D+ + + L
Sbjct: 66 GGKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGML-- 123
Query: 133 THHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
L D D ++DG LS EF
Sbjct: 124 --GLDKTMAPASF----DAIDTNNDGLLSLEEF 150
Score = 44.3 bits (105), Expect = 3e-06
Identities = 11/93 (11%), Positives = 29/93 (31%), Gaps = 5/93 (5%)
Query: 102 KAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILD-----EADLDD 156
K + F DFD D + D + + +R + + L+ ++ +
Sbjct: 7 KMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVAG 66
Query: 157 DGALSFAEFELFIEKSQDFAKWTSIQREYIQEL 189
+ F +++ + S+ +
Sbjct: 67 GKGIDETTFINSMKEMVKNPEAKSVVEGPLPLF 99
Score = 31.6 bits (72), Expect = 0.082
Identities = 19/104 (18%), Positives = 35/104 (33%), Gaps = 9/104 (8%)
Query: 77 HDGDCTFEDFLDMMSVFSESAP-KPVKAEHAFRIFDFDGDDMLGMTDLKQIIDR---LTG 132
DG T DF M F++ + K A+ D+ L + ID +
Sbjct: 19 KDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVAGGKGIDETTFINS 78
Query: 133 THHLSDND-----IQHLIQNILDEADLDDDGALSFAEFELFIEK 171
+ N ++ + D ++D +S E+ +F
Sbjct: 79 MKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGM 122
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR
{Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 46.7 bits (112), Expect = 3e-07
Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 9/90 (10%)
Query: 78 DGDCTFEDFLDMMSVFSESAPKPVKAE--HAFRIFDFDGDDMLGMTDLKQIIDRLTGTHH 135
+ E FL +++ + E F++FD D M+G+ +L+ ++ L G
Sbjct: 51 PAEVDMEQFLQVLNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSL-G-EK 108
Query: 136 LSDNDIQHLIQNILDEADLDDDGALSFAEF 165
LS+ ++ L+ DG +++ +F
Sbjct: 109 LSNEEMDELL----KGVP-VKDGMVNYHDF 133
Score = 27.9 bits (63), Expect = 1.3
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 10/60 (16%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
AF +FD G + T + ++ R G + + +I E + + +F
Sbjct: 10 AFSLFDRHGTGRIPKTSIGDLL-RACG-QNPTLAEIT--------EIESTLPAEVDMEQF 59
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 47.4 bits (113), Expect = 3e-07
Identities = 20/93 (21%), Positives = 27/93 (29%), Gaps = 16/93 (17%)
Query: 83 FEDFLDMMSVFS----------ESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTG 132
F FLD + E + F IFD DG + + + K
Sbjct: 85 FPQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEWKAYGKISG- 143
Query: 133 THHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
S D + DLD+ G L E
Sbjct: 144 -ISPSQEDCEATF----RHCDLDNAGDLDVDEM 171
Score = 32.8 bits (75), Expect = 0.039
Identities = 9/68 (13%), Positives = 21/68 (30%), Gaps = 10/68 (14%)
Query: 105 HAFRIFDFDGDDMLGMTDLKQIIDRLTGT------HHLSDNDIQHLIQNI-LDEADLDDD 157
H F D +G+ G L +I+ + + + ++
Sbjct: 24 HMFDFLDINGN---GKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGMEYG 80
Query: 158 GALSFAEF 165
++F +F
Sbjct: 81 KEIAFPQF 88
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 48.2 bits (115), Expect = 4e-07
Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 9/105 (8%)
Query: 67 DRICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQI 126
D++ +G + +F+ +++ ++ + E AFR+FD D + T+L I
Sbjct: 385 DQVLDAVDFDKNGYIEYSEFV-TVAMDRKTLLSRERLERAFRMFDSDNSGKISSTELATI 443
Query: 127 IDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEK 171
G + + ++ E D ++DG + F EF+ + K
Sbjct: 444 F----GVSDVDSETWKSVLS----EVDKNNDGEVDFDEFQQMLLK 480
Score = 35.4 bits (82), Expect = 0.008
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 106 AFRIFDFDGDDMLGMTDLKQ-----IIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGAL 160
F D +GD L +L + + + L + ++H + +LD D D +G +
Sbjct: 340 IFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDKNGYI 399
Query: 161 SFAEF 165
++EF
Sbjct: 400 EYSEF 404
Score = 27.7 bits (62), Expect = 2.4
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 120 MTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFE 166
L Q G+ S ++ + L I + D + DG L AE
Sbjct: 313 TQKLAQAALLYMGSKLTSQDETKELTA-IFHKMDKNGDGQLDRAELI 358
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 46.0 bits (110), Expect = 4e-07
Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 14/92 (15%)
Query: 78 DGDCT--FEDFLDMMSVFSESAPKPVKAE--HAFRIFDFDGDDMLGMTDLKQIIDRLTGT 133
DG+ +F K +++ D DGD L ++ +
Sbjct: 48 DGNGEIDQNEFAKFYGSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKHG-- 105
Query: 134 HHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
+ + +AD + DG ++ EF
Sbjct: 106 ----IEKVAEQVM----KADANGDGYITLEEF 129
Score = 38.7 bits (91), Expect = 2e-04
Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
F+ D +GD + ++K + + ++ +Q + + D D +G + EF
Sbjct: 5 LFKEIDVNGDGAVSYEEVKAFVSKKR--AIKNEQLLQLIFK----SIDADGNGEIDQNEF 58
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 46.4 bits (111), Expect = 4e-07
Identities = 15/92 (16%), Positives = 36/92 (39%), Gaps = 10/92 (10%)
Query: 78 DGDCTFEDFLDMMSVFSESAPKPVKAE--HAFRIFDFDGDDMLGMTDLKQIIDRLTGTHH 135
+ E+ L + S E AF+ FD +G ++ +++ ++ L G
Sbjct: 60 EKAYKLEEILPIYEEMSSKDTGTAADEFMEAFKTFDREGQGLISSAEIRNVLKML-G-ER 117
Query: 136 LSDNDIQHLIQNILDEADL--DDDGALSFAEF 165
++++ + D+ D DG + + +
Sbjct: 118 ITEDQCNDIF----TFCDIREDIDGNIKYEDL 145
Score = 28.3 bits (64), Expect = 1.1
Identities = 9/62 (14%), Positives = 19/62 (30%), Gaps = 9/62 (14%)
Query: 106 AFRIFDF--DGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFA 163
F +FDF D + + ++ R G + ++ + + A
Sbjct: 14 VFDLFDFWDGRDGDVDAAKVGDLL-RCLG-MNPTEAQVHQHG-----GTKKMGEKAYKLE 66
Query: 164 EF 165
E
Sbjct: 67 EI 68
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 47.8 bits (114), Expect = 5e-07
Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 9/108 (8%)
Query: 67 DRICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQI 126
D I +G + +F+ + + + + AF +FD D + +L +
Sbjct: 402 DNILKEVDFDKNGYIEYSEFI-SVCMDKQILFSEERLRRAFNLFDTDKSGKITKEELANL 460
Query: 127 IDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQD 174
G +S+ ++ EAD + D + F EF + K D
Sbjct: 461 F----GLTSISEKTWNDVLG----EADQNKDNMIDFDEFVSMMHKICD 500
Score = 36.2 bits (84), Expect = 0.004
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRL--TGTHHLSDNDIQHLIQNILDEADLDDDGALSFA 163
F+ D +GD L +L + + L +++ + NIL E D D +G + ++
Sbjct: 360 IFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDKNGYIEYS 419
Query: 164 EF 165
EF
Sbjct: 420 EF 421
Score = 28.5 bits (64), Expect = 1.2
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 1/70 (1%)
Query: 120 MTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQDFAKWT 179
L Q G+ + + + L I + D + DG L E ++F
Sbjct: 333 SQKLAQAAILFIGSKLTTLEERKELTD-IFKKLDKNGDGQLDKKELIEGYNVLRNFKNEL 391
Query: 180 SIQREYIQEL 189
+ +E+
Sbjct: 392 GELKNVEEEV 401
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 47.4 bits (113), Expect = 7e-07
Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 9/105 (8%)
Query: 67 DRICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQI 126
D I +G + +F+ +++ +S K E AF+ FD DG+ + + +L +
Sbjct: 393 DAILGAADFDRNGYIDYSEFV-TVAMDRKSLLSKDKLESAFQKFDQDGNGKISVDELASV 451
Query: 127 IDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEK 171
G HL + ++ D ++DG + F EF I+K
Sbjct: 452 F----GLDHLESKTWK----EMISGIDSNNDGDVDFEEFCKMIQK 488
Score = 36.2 bits (84), Expect = 0.005
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRL--TGTHHLSDNDIQHLIQNILDEADLDDDGALSFA 163
FR D +GD L +L +L I+ + IL AD D +G + ++
Sbjct: 351 IFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRNGYIDYS 410
Query: 164 EF 165
EF
Sbjct: 411 EF 412
Score = 28.1 bits (63), Expect = 2.1
Identities = 12/70 (17%), Positives = 18/70 (25%), Gaps = 1/70 (1%)
Query: 120 MTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQDFAKWT 179
L Q + S + + L I D + DG L E K
Sbjct: 324 SQKLAQAALLYMASKLTSQEETKELTD-IFRHIDKNGDGQLDRQELIDGYSKLSGEEVAV 382
Query: 180 SIQREYIQEL 189
+ E+
Sbjct: 383 FDLPQIESEV 392
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 46.0 bits (110), Expect = 7e-07
Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 6/88 (6%)
Query: 78 DGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLS 137
G F FL M + A AF++ D DG + + L++++ +
Sbjct: 72 SGPINFTVFLTMFGEKLKGADPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTGG--GRFT 129
Query: 138 DNDIQHLIQNILDEADLDDDGALSFAEF 165
+I+++ D G + +
Sbjct: 130 PEEIKNMW----AAFPPDVAGNVDYKNI 153
Score = 31.8 bits (73), Expect = 0.063
Identities = 14/70 (20%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
AF + D + D ++ DL++ + G ++ + ++ +I+ + G ++F F
Sbjct: 30 AFTVIDQNADGIIDKDDLRETFAAM-GRLNVKNEELDAMIK--------EASGPINFTVF 80
Query: 166 -ELFIEKSQD 174
+F EK +
Sbjct: 81 LTMFGEKLKG 90
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 44.9 bits (107), Expect = 7e-07
Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 8/89 (8%)
Query: 78 DGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGT-HHL 136
+G + F ++ + + SA K F+ D D + +LK ++ L
Sbjct: 22 EGSFNHKKFFALVGLKAMSANDVKKV---FKAIDADASGFIEEEELKFVLKSFAADGRDL 78
Query: 137 SDNDIQHLIQNILDEADLDDDGALSFAEF 165
+D + + L AD D DG + EF
Sbjct: 79 TDAETK----AFLKAADKDGDGKIGIDEF 103
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 45.6 bits (109), Expect = 8e-07
Identities = 20/98 (20%), Positives = 41/98 (41%), Gaps = 9/98 (9%)
Query: 78 DGDCTFEDFLDMMSVF-SESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHL 136
G F FL + S + P+ AF +FD DG + LK +++ + +
Sbjct: 62 PGQLNFTAFLTLFGEKVSGTDPEDALRN-AFSMFDEDGQGFIPEDYLKDLLENM--GDNF 118
Query: 137 SDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQD 174
S +I+++ +A L + ++ + K++D
Sbjct: 119 SKEEIKNVW----KDAPL-KNKQFNYNKMVDIKGKAED 151
Score = 31.0 bits (71), Expect = 0.11
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
AF + D D D +GM DLK + L G D+++ +++ G L+F F
Sbjct: 21 AFTMIDQDRDGFIGMEDLKDMFSSL-G-RVPPDDELNAMLKEC--------PGQLNFTAF 70
Query: 166 -ELFIEKSQD 174
LF EK
Sbjct: 71 LTLFGEKVSG 80
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 43.7 bits (104), Expect = 1e-06
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
AF++FD +GD ++ + K I+ ++ G L+D +++ + EAD D +G + EF
Sbjct: 13 AFKVFDANGDGVIDFDEFKFIMQKV-GEEPLTDAEVEEAM----KEADEDGNGVIDIPEF 67
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 45.8 bits (109), Expect = 1e-06
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 9/89 (10%)
Query: 78 DGDCTFEDFLDMMSVF-SESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHL 136
G F FL + + + + V AF +FD +GD LK+ + G
Sbjct: 103 PGPINFTMFLTIFGDRIAGTDEEDVIVN-AFNLFD-EGDGKCKEETLKRSLTTW-G-EKF 158
Query: 137 SDNDIQHLIQNILDEADLDDDGALSFAEF 165
S +++ + EA +D +G + +F
Sbjct: 159 SQDEVDQAL----SEAPIDGNGLIDIKKF 183
Score = 30.7 bits (70), Expect = 0.16
Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 11/70 (15%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
AF++ D D D + D++ D L G ++ ++ ++ + G ++F F
Sbjct: 62 AFQLIDQDKDGFISKNDIRATFDSL-G-RLCTEQELDSMVA--------EAPGPINFTMF 111
Query: 166 -ELFIEKSQD 174
+F ++
Sbjct: 112 LTIFGDRIAG 121
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 44.2 bits (105), Expect = 1e-06
Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 8/84 (9%)
Query: 83 FEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLT-GTHHLSDNDI 141
+ F M+ + +SA K F I D D + +L I+ + LS +
Sbjct: 26 HKKFFQMVGLKKKSADDVKKV---FHILDKDKSGFIEEDELGSILKGFSSDARDLSAKET 82
Query: 142 QHLIQNILDEADLDDDGALSFAEF 165
+ L+ D D DG + EF
Sbjct: 83 KTLMA----AGDKDGDGKIGVEEF 102
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 46.6 bits (111), Expect = 1e-06
Identities = 18/108 (16%), Positives = 45/108 (41%), Gaps = 7/108 (6%)
Query: 67 DRICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQI 126
D + + G + +F+ ++ + E AF++FD DG + +L ++
Sbjct: 384 DSLMPLLDMDGSGSIEYSEFI-ASAIDRTILLSRERMERAFKMFDKDGSGKISTKELFKL 442
Query: 127 IDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQD 174
+ + +++ +I+++ D + DG + F EF ++
Sbjct: 443 FSQ--ADSSIQMEELE----SIIEQVDNNKDGEVDFNEFVEMLQNFVR 484
Score = 33.1 bits (76), Expect = 0.047
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDND--------IQHLIQNILDEADLDDD 157
FR D + D ML +L + + N I+ I +++ D+D
Sbjct: 336 IFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLLDMDGS 395
Query: 158 GALSFAEF 165
G++ ++EF
Sbjct: 396 GSIEYSEF 403
Score = 27.0 bits (60), Expect = 4.2
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 120 MTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFE 166
L Q + + ++ + L + I + D ++DG L E
Sbjct: 309 EKKLAQAALLYMASKLTTLDETKQLTE-IFRKLDTNNDGMLDRDELV 354
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 45.8 bits (109), Expect = 1e-06
Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 13/93 (13%)
Query: 73 FSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTG 132
+ +H G+ TF++F D+ FR D GD L +++ + G
Sbjct: 72 YDKNHSGEITFDEFKDLHHFILS-------MREGFRKRDSSGDGRLDSNEVRAALLSS-G 123
Query: 133 THHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
+ +S+ Q L+ + D G+L F ++
Sbjct: 124 -YQVSEQTFQALM----RKFDRQRRGSLGFDDY 151
Score = 35.0 bits (81), Expect = 0.007
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 6/60 (10%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
FR D DG + + +L + S + L+ D + G ++F EF
Sbjct: 32 WFRAVDTDGSGAISVPELNAALSSAG--VPFSLATTEKLL----HMYDKNHSGEITFDEF 85
Score = 28.4 bits (64), Expect = 1.2
Identities = 6/49 (12%), Positives = 15/49 (30%), Gaps = 7/49 (14%)
Query: 67 DRICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGD 115
+ F G F+D++++ + F +D +
Sbjct: 132 QALMRKFDRQRRGSLGFDDYVELSIFVCR-------VRNVFAFYDRERT 173
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: a.39.1.5
Length = 67
Score = 42.9 bits (102), Expect = 2e-06
Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
F FD + D L + + +++ + + + DI +E D+D +G L+ EF
Sbjct: 6 VFEKFDKNKDGKLSLDEFREVALAFS--PYFTQEDIVKFF----EEIDVDGNGELNADEF 59
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 44.5 bits (106), Expect = 2e-06
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 11/92 (11%)
Query: 78 DGDCTFEDFLDMMSVFSESAPKPVKAE--HAFRIFDFDGDDMLGMTDLKQIIDRLTGTHH 135
+ FE+FL + A+ AF+ FD +G + +L+ ++ L G
Sbjct: 60 EKSLPFEEFLPAYEGLMDCEQGT-FADYMEAFKTFDREGQGFISGAELRHVLTAL-G-ER 116
Query: 136 LSDNDIQHLIQNILDEADL--DDDGALSFAEF 165
LSD D+ +I DL D +G + + +F
Sbjct: 117 LSDEDVDEII----KLTDLQEDLEGNVKYEDF 144
Score = 27.9 bits (63), Expect = 1.4
Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 9/62 (14%)
Query: 106 AFRIFDF--DGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFA 163
F +FDF D + L + R G + + D+ + + +L F
Sbjct: 14 VFELFDFWDGRDGAVDAFKLGDVC-RCLG-INPRNEDVFAVG-----GTHKMGEKSLPFE 66
Query: 164 EF 165
EF
Sbjct: 67 EF 68
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 44.1 bits (105), Expect = 3e-06
Identities = 17/90 (18%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 78 DGDCTFEDFLDMMSVFSESAPKPVKAE--HAFRIFDFDGDDMLGMTDLKQIIDRLTGTHH 135
TFE+FL M+ + + + + R+FD +G+ + +L+ ++ L G
Sbjct: 60 AAAITFEEFLPMLQAAANNKDQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATL-G-EK 117
Query: 136 LSDNDIQHLIQNILDEADLDDDGALSFAEF 165
+++ +++ L+ + D +G +++ F
Sbjct: 118 MTEEEVEELM----KGQE-DSNGCINYEAF 142
Score = 33.3 bits (77), Expect = 0.019
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
AF +FD GD + + + I R G + ++ +I ++ N + + A++F EF
Sbjct: 13 AFLLFDRTGDAKITASQVGDIA-RALG-QNPTNAEINKILGNP--SKEEMNAAAITFEEF 68
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 43.3 bits (103), Expect = 3e-06
Identities = 17/99 (17%), Positives = 37/99 (37%), Gaps = 14/99 (14%)
Query: 78 DGDCTFEDFLDMMSVFSESAPKPVKAEH---AFRIFDFDGDDMLGMTDLKQIIDRLTGT- 133
G ++ F ++ + ++ F I D D + +LK ++ +
Sbjct: 21 PGTFDYKRFFHLVGLKGKTD------AQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHG 74
Query: 134 HHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKS 172
L+D + + +L D D DG + EF + ++
Sbjct: 75 RDLNDTETK----ALLAAGDSDHDGKIGADEFAKMVAQA 109
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 44.1 bits (105), Expect = 3e-06
Identities = 13/89 (14%), Positives = 31/89 (34%), Gaps = 8/89 (8%)
Query: 77 HDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHL 136
+ + T+E +L+ +S+ + F FD + L + +K I+ L
Sbjct: 60 YGDNLTYEQYLEYLSICVHDKDNVEELIKMFAHFDNNCTGYLTKSQMKNILTTW--GDAL 117
Query: 137 SDNDIQHLIQNILDEADLDDDGALSFAEF 165
+D + + + + + F
Sbjct: 118 TDQEAIDALN------AFSSEDNIDYKLF 140
Score = 26.4 bits (59), Expect = 3.7
Identities = 5/60 (8%), Positives = 17/60 (28%), Gaps = 10/60 (16%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
+ + + + +L G S D + + + L++ ++
Sbjct: 20 RIYFNEKSSGGKISIDNASYNARKL-G-LAPSSIDEKKIKE--------LYGDNLTYEQY 69
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 42.9 bits (102), Expect = 4e-06
Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 8/89 (8%)
Query: 78 DGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLT-GTHHL 136
++F + + S+S VK AF + D D + +LK + + L
Sbjct: 21 ADSFKHKEFFAKVGLASKS-LDDVKK--AFYVIDQDKSGFIEEDELKLFLQNFSPSARAL 77
Query: 137 SDNDIQHLIQNILDEADLDDDGALSFAEF 165
+D + + + + D D DG + EF
Sbjct: 78 TDAETKAFLA----DGDKDGDGMIGVDEF 102
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 43.6 bits (104), Expect = 4e-06
Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 7/83 (8%)
Query: 83 FEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQ 142
F +FL MM + AFR FD +G + L+ + L L ++
Sbjct: 61 FPEFLSMMGRRMKQTTSEDILRQAFRTFDPEGTGYIPKAALQDALLNL--GDRLKPHEFA 118
Query: 143 HLIQNILDEADLDDDGALSFAEF 165
+ + + G + + F
Sbjct: 119 EFL----GITET-EKGQIRYDNF 136
Score = 37.8 bits (89), Expect = 4e-04
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
AF +FD + + L+ ++ + G + + EAD +G + F EF
Sbjct: 11 AFELFDSERTGFITKEGLQTVLKQF-G-VRVEPAAFNEMFN----EADATGNGKIQFPEF 64
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 41.7 bits (99), Expect = 5e-06
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
AFR FD DGD + + +L++ + L L ++ +I EAD+D DG +++ EF
Sbjct: 11 AFRAFDQDGDGHITVDELRRAMAGLG--QPLPQEELDAMI----READVDQDGRVNYEEF 64
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 43.2 bits (103), Expect = 6e-06
Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 83 FEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQ 142
F +FL +MS + + AF++FD +GD ++ +LK ++ + L+D ++
Sbjct: 66 FSEFLALMSRQLKCNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSI--GEKLTDAEVD 123
Query: 143 HLIQNILDEADLDDDGALSFAEF 165
++ E D G ++ +F
Sbjct: 124 EML----REVS-DGSGEINIKQF 141
Score = 35.9 bits (84), Expect = 0.002
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
AF +FD D + ++L ++ L G S+ ++ L+ E D+D + A+ F+EF
Sbjct: 16 AFALFDKDNSGSISASELATVMRSL-G-LSPSEAEVADLMN----EIDVDGNHAIEFSEF 69
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 42.3 bits (100), Expect = 7e-06
Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 8/89 (8%)
Query: 78 DGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRL-TGTHHL 136
+ F S+ + VK FR D D L +LK + + + L
Sbjct: 21 PDTFEPQKFFQTSG-LSKMSASQVKD--IFRFIDNDQSGYLDGDELKYFLQKFQSDAREL 77
Query: 137 SDNDIQHLIQNILDEADLDDDGALSFAEF 165
++++ + L+ D AD D DG + EF
Sbjct: 78 TESETKSLM----DAADNDGDGKIGADEF 102
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 42.2 bits (100), Expect = 8e-06
Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 8/89 (8%)
Query: 78 DGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLT-GTHHL 136
++ F + + ++SA KA F + D D + +LK + + G L
Sbjct: 22 ADSFNYKAFFAKVGLTAKSADDIKKA---FFVIDQDKSGFIEEDELKLFLQVFSAGARAL 78
Query: 137 SDNDIQHLIQNILDEADLDDDGALSFAEF 165
+D + + ++ D D DGA+ E+
Sbjct: 79 TDAETKAFLK----AGDSDGDGAIGVDEW 103
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 41.4 bits (98), Expect = 9e-06
Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 6/60 (10%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
AF++FD D + + ++L+ ++ L L+D +++ +I+ EADLD DG +++ EF
Sbjct: 14 AFKVFDKDQNGYISASELRHVMINLG--EKLTDEEVEQMIK----EADLDGDGQVNYEEF 67
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 41.7 bits (98), Expect = 1e-05
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 6/60 (10%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
F FD + + + + I +R L+D L +E ++ G L + +F
Sbjct: 29 EFENFDTMKTNTISREEFRAICNRRVQ--ILTDEQFDRLW----NEMPVNAKGRLKYPDF 82
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 42.5 bits (101), Expect = 1e-05
Identities = 17/89 (19%), Positives = 37/89 (41%), Gaps = 9/89 (10%)
Query: 78 DGDCTFEDFLDMMSVF-SESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHL 136
G F FL + S S + + AF +FD L + +K +++ + G +
Sbjct: 64 PGPLNFTMFLSIFSDKLSGTDSEETIRN-AFAMFDEQETKKLNIEYIKDLLENM-G-DNF 120
Query: 137 SDNDIQHLIQNILDEADLDDDGALSFAEF 165
+ ++++ EA + + G + +F
Sbjct: 121 NKDEMRMTF----KEAPV-EGGKFDYVKF 144
Score = 31.7 bits (73), Expect = 0.077
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
AF + D D D + D+K I ++L G D ++ +++ + G L+F F
Sbjct: 23 AFSMIDVDRDGFVSKEDIKAISEQL-G-RAPDDKELTAMLK--------EAPGPLNFTMF 72
Query: 166 -ELFIEKSQD 174
+F +K
Sbjct: 73 LSIFSDKLSG 82
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 43.3 bits (102), Expect = 1e-05
Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 6/97 (6%)
Query: 77 HDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHL 136
+ G F +FL+ + + F D G+ ++ + K+ + +L
Sbjct: 107 NKGSEDFVEFLEFR-LMLCYIYDFFELTVMFDEIDASGNMLVDEEEFKRAVPKL-EAWGA 164
Query: 137 SDNDIQHLIQNILDEADLDDDGALSFAEFELFIEKSQ 173
D L + E D + G+++F EF + +
Sbjct: 165 KVEDPAALFK----ELDKNGTGSVTFDEFAAWASAVK 197
Score = 37.2 bits (86), Expect = 0.001
Identities = 10/65 (15%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEA-----DLDDDGAL 160
F+ FD + L ++ + + ++ + + D++ L++ G+
Sbjct: 53 LFKKFDKNETGKLCYDEVYSGCLEVLK-LDEFTSRVRDITKRAFDKSRTLGSKLENKGSE 111
Query: 161 SFAEF 165
F EF
Sbjct: 112 DFVEF 116
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 41.1 bits (97), Expect = 2e-05
Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 8/89 (8%)
Query: 78 DGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRL-TGTHHL 136
++ F + + S++ + K F I D D + +L+ + + L
Sbjct: 22 ADSFNYKSFFSTVGLSSKTPDQIKKV---FGILDQDKSGFIEEEELQLFLKNFSSSARVL 78
Query: 137 SDNDIQHLIQNILDEADLDDDGALSFAEF 165
+ + + + D D DG + EF
Sbjct: 79 TSAETKAFLA----AGDTDGDGKIGVEEF 103
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 41.8 bits (99), Expect = 2e-05
Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 17/107 (15%)
Query: 63 NPFGDRICH----IFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDML 118
PF +F + F +F + + ++ FR +D D M+
Sbjct: 39 TPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYIT-------DWQNVFRTYDRDNSGMI 91
Query: 119 GMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
+LKQ + G + LSD LI+ + D G ++F +F
Sbjct: 92 DKNELKQALSGF-G-YRLSDQFHDILIR----KFDRQGRGQIAFDDF 132
Score = 37.2 bits (87), Expect = 0.001
Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
F+ D D ++ T+L+Q + + ++ +I D ++ ++F+EF
Sbjct: 12 VFQRVDKDRSGVISDTELQQALSNG-TWTPFNPVTVRSII----SMFDRENKAGVNFSEF 66
Score = 26.8 bits (60), Expect = 3.4
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 7/53 (13%)
Query: 63 NPFGDRICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGD 115
+ F D + F G F+DF+ V + FR +D D D
Sbjct: 109 DQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQ-------RLTDIFRRYDTDQD 154
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 2e-05
Identities = 41/237 (17%), Positives = 70/237 (29%), Gaps = 76/237 (32%)
Query: 1 MGQSESQFTEEELQDYEDLTYFTKKEILA---HQKFKSLAPEKVGHNKNAKLPMTKILLY 57
+ T +E+ K +L + + L E + N P ++
Sbjct: 291 LDHHSMTLTPDEV-----------KSLLLKYLDCRPQDLPREVLTTN-----PRRLSIIA 334
Query: 58 PQLRVNP---------FGDRICHIFSSSHDG--DCTFEDFLDMMSVFSESAPKPVKAEHA 106
+R D++ I SS + + D +SVF SA P
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP---TIL 391
Query: 107 FRIFDFDG---DDMLGMTDL-------KQIIDRLTGTHHL-------SDNDIQ-H--LIQ 146
+ FD D M+ + L KQ + + +N+ H ++
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
Query: 147 --NILDEADLDD------DGA--------LSFAE----FELFIEKSQDFAKWTSIQR 183
NI D DD D L E LF DF ++ +++
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF-RF--LEQ 505
Score = 26.7 bits (58), Expect = 5.8
Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 24/105 (22%)
Query: 105 HAFRIFDFDGDDM-LGMTDLKQI-IDRLTGTHHLSDNDIQHLIQNILDEADLD------D 156
H DF+ + D+ + D + D+Q + ++IL + ++D D
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFEDAFV--DNFDCKDVQDMPKSILSKEEIDHIIMSKD 59
Query: 157 DGALSFAEFELFIEKS----QDFAK----------WTSIQREYIQ 187
+ + F + K Q F + + I+ E Q
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ 104
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 40.3 bits (95), Expect = 3e-05
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 83 FEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRL-TGTHHLSDNDI 141
+ F + + +S +K FRI D D + +LK + R +G L+ ++
Sbjct: 26 PKKFFQISGMSKKS-SSQLKE--IFRILDNDQSGFIEEDELKYFLQRFESGARVLTASET 82
Query: 142 QHLIQNILDEADLDDDGALSFAEF 165
+ + AD D DG + EF
Sbjct: 83 KTFLA----AADHDGDGKIGAEEF 102
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 39.8 bits (94), Expect = 4e-05
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
F++ D D + +LK + R+ L +++I+ L+ AD+D G + + EF
Sbjct: 28 LFKMIDTDNSGTITFDELKDGLKRVG--SELMESEIKDLMD----AADIDKSGTIDYGEF 81
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 40.7 bits (95), Expect = 5e-05
Identities = 16/92 (17%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 84 EDFLDMMSVFSESAPKPVKA-EHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQ 142
+ D E P ++A + + FD +G+ + + LK+++++L G + +++
Sbjct: 30 QFLDDPKYSNDEDLPSKLEAFKVKYMEFDLNGNGDIDIMSLKRMLEKL-G-VPKTHLELK 87
Query: 143 HLIQNILDEADLDDDGALSFAEFELFIEKSQD 174
LI+ E + S+++F + +
Sbjct: 88 RLIR----EVSSGSEETFSYSDFLRMMLGKRS 115
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping,
EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB:
1h4b_A
Length = 86
Score = 38.8 bits (91), Expect = 7e-05
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
F+ FD +GD + ++L + L ++ ++++ ++ E D D DG +SF EF
Sbjct: 16 IFKRFDTNGDGKISSSELGDALKTL---GSVTPDEVRRMMA----EIDTDGDGFISFDEF 68
Query: 166 ELFIEKSQDFAK 177
F ++ K
Sbjct: 69 TDFARANRGLVK 80
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 38.5 bits (90), Expect = 1e-04
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 8/60 (13%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
F D + L + + + L + D + + D D DGA++F EF
Sbjct: 32 VFAACDANRSGRLEREEFRALCTEL----RVRPADAEAVF----QRLDADRDGAITFQEF 83
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 40.0 bits (94), Expect = 1e-04
Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 18/97 (18%)
Query: 77 HDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHL 136
G+ T+ +F+ + +KA AF D D D + +D+ ++ L
Sbjct: 86 DRGNITYTEFMAGCYRWKNIESTFLKA--AFNKIDKDEDGYISKSDIVSLV----HDKVL 139
Query: 137 SDNDIQHLIQNILDEADLDDDGAL--------SFAEF 165
+ND I N G SF EF
Sbjct: 140 DNND----IDNFFLSVHSIKKGIPREHIINKISFQEF 172
Score = 35.0 bits (81), Expect = 0.005
Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
F D + + L ++ ++ + + DI ++Q D++D G +++ EF
Sbjct: 44 LFYKLDTNHNGSLSHREIYTVLASV----GIKKWDINRILQ----ALDINDRGNITYTEF 95
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 38.5 bits (90), Expect = 2e-04
Identities = 11/60 (18%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
+ FD +G+ + + LK+++++L + +++ LI E S+ +F
Sbjct: 37 KYMEFDLNGNGDIDIMSLKRMLEKLG--VPKTHLELKKLIG----EVSSGSGETFSYPDF 90
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 37.9 bits (89), Expect = 2e-04
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
AF +FD + + +LK + L + +I L+ E D + +G + F +F
Sbjct: 12 AFDLFDTNKTGSIDYHELKVAMRALG--FDVKKPEILELMN----EYDREGNGYIGFDDF 65
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 39.6 bits (93), Expect = 2e-04
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
FR D DG L + +Q + +L G L + + + + + D + G L EF
Sbjct: 42 FFRQLDRDGSRSLDADEFRQGLAKL-G-LVLDQAEAEGVCR----KWDRNGSGTLDLEEF 95
Score = 38.5 bits (90), Expect = 5e-04
Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 9/94 (9%)
Query: 78 DGDCTFEDFLDMMSVFSESAPKPVKAEH---AFRIFDFDGDDMLGMTDLKQIID-RLTGT 133
G E+FL + + AF D GD ++ + DL+ + R
Sbjct: 87 SGTLDLEEFLRALR----PPMSQAREAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPK 142
Query: 134 HHLSDNDIQHLIQNILDEADLDD-DGALSFAEFE 166
+ +++ LD D + DG ++ AEF+
Sbjct: 143 VRSGEWTEDEVLRRFLDNFDSSEKDGQVTLAEFQ 176
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 37.6 bits (88), Expect = 2e-04
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
AF +FD DG + +L ++ L G + + ++ +I+ E D D G + F EF
Sbjct: 25 AFDMFDADGGGDISTKELGTVMRML-G-QNPTKEELDAIIE----EVDEDGSGTIDFEEF 78
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 37.2 bits (87), Expect = 3e-04
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 105 HAFRIFDFDGDDM--LGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSF 162
AF +F D + +LK ++ L + + + +I+ E D + DG +SF
Sbjct: 9 GAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIE----EVDKNGDGEVSF 64
Query: 163 AEFELFIEK 171
EF + ++K
Sbjct: 65 EEFLVMMKK 73
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 36.8 bits (86), Expect = 4e-04
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
F+ FD +GD + +++L + L S +++Q ++ E D D DG + F EF
Sbjct: 8 IFKRFDTNGDGKISLSELTDALRTL---GSTSADEVQRMMA----EIDTDGDGFIDFNEF 60
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 36.5 bits (85), Expect = 5e-04
Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
AF++FD D D+ L +L ++ L + + I +++ + D D+ G F
Sbjct: 19 AFQLFDKDNDNKLTAEELGTVMRALG--ANPTKQKISEIVK----DYDKDNSGKFDQETF 72
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 37.1 bits (86), Expect = 6e-04
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 8/59 (13%)
Query: 107 FRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
F D L + I+ + L + I + +D+D DG L+ EF
Sbjct: 20 FNSHDKTMSGHLTGPQARTILMQS----SLPQAQLAS----IWNLSDIDQDGKLTAEEF 70
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 36.0 bits (84), Expect = 6e-04
Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Query: 104 EHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFA 163
E F+ D +GD + ++K + + ++ +Q + + D D +G +
Sbjct: 3 EALFKEIDVNGDGAVSYEEVKAFVSKKR--AIKNEQLLQLIFK----SIDADGNGEIDQN 56
Query: 164 EFELFIEKSQ 173
EF F Q
Sbjct: 57 EFAKFYGSIQ 66
Score = 27.1 bits (61), Expect = 0.75
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 144 LIQNILDEADLDDDGALSFAEFELFIEK 171
+ + + E D++ DGA+S+ E + F+ K
Sbjct: 1 MAEALFKEIDVNGDGAVSYEEVKAFVSK 28
Score = 25.6 bits (57), Expect = 2.7
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 77 HDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGD 115
DG ++E+ +S + + F+ D DG+
Sbjct: 13 GDGAVSYEEVKAFVSKKRAIKNEQ-LLQLIFKSIDADGN 50
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 36.7 bits (85), Expect = 8e-04
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 8/59 (13%)
Query: 107 FRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
FR D + + K + LS ++ + I + +D D DGAL+ EF
Sbjct: 28 FRSLQPDPSSFISGSVAKNFFTKS----KLSIPELSY----IWELSDADCDGALTLPEF 78
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 36.2 bits (84), Expect = 0.001
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 8/59 (13%)
Query: 107 FRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
F D D D + ++++I + L + H I D D G LS +F
Sbjct: 16 FLKTDKDMDGFVSGLEVREIFLKT----GLPSTLLAH----IWSLCDTKDCGKLSKDQF 66
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis complex;
NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 35.9 bits (83), Expect = 0.001
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 8/59 (13%)
Query: 107 FRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
F+ D + + + K+ + L ++ H I + +D D DGAL+ EF
Sbjct: 15 FKTIQPDLNGFIPGSAAKEFFTKS----KLPILELSH----IWELSDFDKDGALTLDEF 65
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 35.3 bits (81), Expect = 0.002
Identities = 10/77 (12%), Positives = 30/77 (38%), Gaps = 10/77 (12%)
Query: 107 FRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDN----------DIQHLIQNILDEADLDD 156
F + D + D +L +L+ + + + N + + ++++ D +
Sbjct: 26 FILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVDTNQ 85
Query: 157 DGALSFAEFELFIEKSQ 173
D ++ EF ++ +
Sbjct: 86 DRLVTLEEFLASTQRKE 102
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 36.9 bits (86), Expect = 0.003
Identities = 8/62 (12%), Positives = 13/62 (20%), Gaps = 9/62 (14%)
Query: 104 EHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFA 163
+ D + + Q +D I Q+ DG
Sbjct: 385 LNPHIHLMGDESACIAYIRITQYLD---------AGGIPRTAQSEETRVWHRRDGKWQIV 435
Query: 164 EF 165
F
Sbjct: 436 HF 437
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 35.4 bits (82), Expect = 0.004
Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 19/107 (17%)
Query: 63 NPFGDRICH----IFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDML 118
+PF C + H G F F ++ + + F D DG +
Sbjct: 35 SPFSLETCRIMIAMLDRDHTGKMGFNAFKELWA-------ALNAWKENFMTVDQDGSGTV 87
Query: 119 GMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
+L+Q I + G + LS + +++ +G + F ++
Sbjct: 88 EHHELRQAIGLM-G-YRLSPQTLTTIVKRY------SKNGRIFFDDY 126
Score = 26.2 bits (58), Expect = 5.8
Identities = 10/73 (13%), Positives = 21/73 (28%), Gaps = 9/73 (12%)
Query: 107 FRIFD--FDGDDMLGMTDLKQIIDRLT---GTHHLSDNDIQHLIQNILDEADLDDDGALS 161
+ F D + +L++ + + S + +I D D G +
Sbjct: 3 YTYFSAVAGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIA----MLDRDHTGKMG 58
Query: 162 FAEFELFIEKSQD 174
F F+
Sbjct: 59 FNAFKELWAALNA 71
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 35.5 bits (82), Expect = 0.005
Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 6/60 (10%)
Query: 106 AFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
F D D L + +L G LS ++ D D +G +SF EF
Sbjct: 56 WFMGVDRDRSGTLEINELMMGQFP--GGIRLSPQTALRMM----RIFDTDFNGHISFYEF 109
Score = 33.6 bits (77), Expect = 0.025
Identities = 12/106 (11%), Positives = 29/106 (27%), Gaps = 18/106 (16%)
Query: 64 PFGDRICH----IFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLG 119
+ IF + +G +F +F+ M A + F + L
Sbjct: 83 RLSPQTALRMMRIFDTDFNGHISFYEFMAMYKFME-------LAYNLFVMNARARSGTLE 135
Query: 120 MTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
++ + +L G +++ +L +
Sbjct: 136 PHEILPALQQL-G-FYINQR-----TSLLLHRLFARGMAFCDLNCW 174
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 34.4 bits (79), Expect = 0.008
Identities = 9/62 (14%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 104 EHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFA 163
+ + FD + + + + LK+++++L + +++ +I E +S+
Sbjct: 53 KEKYMEFDLNNEGEIDLMSLKRMMEKLG--VPKTHLEMKKMIS----EVTGGVSDTISYR 106
Query: 164 EF 165
+F
Sbjct: 107 DF 108
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II,
calcium/phospholipid binding protein,
calcium-phospholipid protein complex; 2.25A {Homo
sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Length = 96
Score = 33.6 bits (77), Expect = 0.008
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 112 FDGDD-MLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFI 169
F GD L DL+ ++++ + D + I+ + D DG + F F I
Sbjct: 18 FAGDKGYLTKEDLRVLMEKEFPGFLENQKD-PLAVDKIMKDLDQCRDGKVGFQSFFSLI 75
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 34.7 bits (80), Expect = 0.009
Identities = 16/106 (15%), Positives = 34/106 (32%), Gaps = 19/106 (17%)
Query: 64 PFGDRICHI----FSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLG 119
PF C + G F +F ++ + F FD D +
Sbjct: 69 PFNLETCRLMVSMLDRDMSGTMGFNEFKELWA-------VLNGWRQHFISFDTDRSGTVD 121
Query: 120 MTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
+L++ + G LS + + + +G ++F ++
Sbjct: 122 PQELQKAL-TTMG-FRLSPQAVNSIAKRY------STNGKITFDDY 159
Score = 27.4 bits (61), Expect = 2.2
Identities = 11/75 (14%), Positives = 24/75 (32%), Gaps = 9/75 (12%)
Query: 96 SAPKPVKAEHAFRIF--DFDGDDMLGMTDLKQIIDRLT---GTHHLSDNDIQHLIQNILD 150
A + + F D + +L++ + + G + + ++
Sbjct: 25 PAFPGQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMV----S 80
Query: 151 EADLDDDGALSFAEF 165
D D G + F EF
Sbjct: 81 MLDRDMSGTMGFNEF 95
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO,
EF-hand calcium binding proteins, S100 proteins, protein
dynamics, binding protein; 2.10A {Homo sapiens} PDB:
2l0u_A 2l0v_A 2l50_A 2l51_A
Length = 100
Score = 32.5 bits (74), Expect = 0.019
Identities = 11/65 (16%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 105 HAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAE 164
+ + + + + ++++ + H LSD + ++ D + DG +SF E
Sbjct: 18 YKYVSKYSLVKNKISKSSFREMLQKELN-HMLSDTGNRKAADKLIQNLDANHDGRISFDE 76
Query: 165 FELFI 169
+ I
Sbjct: 77 YWTLI 81
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15,
EPS15; EH domain, EF-hand, solution structure, S100
protein; NMR {Mus musculus} SCOP: a.39.1.6
Length = 99
Score = 32.1 bits (73), Expect = 0.031
Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 8/62 (12%)
Query: 104 EHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFA 163
E +R + + D + + L D + I D AD D G LS
Sbjct: 14 EKYYRQVEAGNTGRVLALDAAAFLKKS----GLPDLILGK----IWDLADTDGKGVLSKQ 65
Query: 164 EF 165
EF
Sbjct: 66 EF 67
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB:
1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 32.4 bits (74), Expect = 0.051
Identities = 23/112 (20%), Positives = 42/112 (37%), Gaps = 18/112 (16%)
Query: 58 PQLRVNPFGDRICH----IFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFD 113
P L+ + FG C + S G FE+F + + K + ++ FD D
Sbjct: 37 PDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWN-------NIKKWQAIYKQFDVD 89
Query: 114 GDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
+G ++L + HL+++ +I D+ G + F F
Sbjct: 90 RSGTIGSSELPGAFEAA--GFHLNEHLYSMII-----RRYSDEGGNMDFDNF 134
Score = 27.8 bits (62), Expect = 1.5
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 112 FDGDDM-LGMTDLKQIIDRLTGTHHLSDNDIQHL--IQNILDEADLDDDGALSFAEF 165
GDDM + T+L I++++ H D + ++++ D D G L F EF
Sbjct: 13 LAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEF 69
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB:
1irj_A*
Length = 113
Score = 31.0 bits (70), Expect = 0.077
Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 113 DGD-DMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEK 171
G D L + K+++ + +N + +I++I+++ D + D LSF EF + + +
Sbjct: 25 LGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIEHIMEDLDTNADKQLSFEEFIMLMAR 84
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100
proteins, EF-; 1.94A {Homo sapiens}
Length = 104
Score = 30.6 bits (69), Expect = 0.10
Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 113 DGD-DMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFI 169
+GD L ++LK+++ R L + Q ++ D + D + F E+ +F+
Sbjct: 26 EGDKFKLNKSELKELLTRELP-SWLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFL 82
>2lky_A Uncharacterized protein; infectious disease, tuberculosis, DUF
proteins, ssgcid, STRU genomics; NMR {Mycobacterium
smegmatis str}
Length = 112
Score = 30.6 bits (69), Expect = 0.12
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 122 DLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDD 157
++K I + L H DI LI + DE ++D
Sbjct: 45 EIKAIAEDLEKRAHFDHIDIGVLITQMTDEMPREED 80
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.12
Identities = 33/213 (15%), Positives = 60/213 (28%), Gaps = 78/213 (36%)
Query: 2 GQSESQFTEEELQD-YEDLTYFTKKEIL---AHQKFKSLAPEKVGHNKN----------- 46
GQ + EEL+D Y+ TY L + + L + K
Sbjct: 162 GQGNTDDYFEELRDLYQ--TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 47 ---AKLPMTKILLY-----P-----QL-------RV---NP--FGDRIC----------- 70
+ P LL P QL ++ P +
Sbjct: 220 ENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT 279
Query: 71 -HIFSSSHDGDCTFEDFLD----MMSV-FS------ESAPKPVKAEHAFRIFDFDGDD-- 116
+ + ++E F ++V F E+ P + +
Sbjct: 280 AVAIAETD----SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP 335
Query: 117 --MLGMTDL--KQIIDRLTGT-HHLSDNDIQHL 144
ML +++L +Q+ D + T HL + +
Sbjct: 336 SPMLSISNLTQEQVQDYVNKTNSHLPAG--KQV 366
Score = 28.5 bits (63), Expect = 1.6
Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 16/115 (13%)
Query: 86 FLDMMSVFSESAPKPVKA-----EHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDND 140
FL +S S P V F+ + L D+ + +L + +
Sbjct: 64 FLGYVS--SLVEPSKVGQFDQVLNLCLTEFE---NCYLEGNDIHALAAKLLQENDTTLVK 118
Query: 141 IQHLIQNILDEADLDDDGALSFAEFELFIEKSQDFAKWTSI---Q---REYIQEL 189
+ LI+N + + + LF + A+ +I Q +Y +EL
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL 173
Score = 26.2 bits (57), Expect = 9.8
Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 8/62 (12%)
Query: 76 SHDGDCTFEDFLDM---MSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTG 132
G + E +D + V E+ + KA H I DF G+ L TG
Sbjct: 470 VLSGSIS-ERIVDCIIRLPVKWETTTQ-FKATH---ILDFGPGGASGLGVLTHRNKDGTG 524
Query: 133 TH 134
Sbjct: 525 VR 526
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 31.2 bits (71), Expect = 0.12
Identities = 15/106 (14%), Positives = 33/106 (31%), Gaps = 19/106 (17%)
Query: 64 PFGDRICH----IFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLG 119
PF C + G F +F ++ + F FD D +
Sbjct: 38 PFNLETCRLMVSMLDRDMSGTMGFNEFKELWA-------VLNGWRQHFISFDSDRSGTVD 90
Query: 120 MTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
+L++ + G L+ + + + G ++F ++
Sbjct: 91 PQELQKAL-TTMG-FRLNPQTVNSIAK------RYSTSGKITFDDY 128
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding
protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A
Length = 113
Score = 30.3 bits (68), Expect = 0.13
Identities = 15/91 (16%), Positives = 32/91 (35%), Gaps = 2/91 (2%)
Query: 79 GDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSD 138
G M ++ V H + + L ++LK+++ R L
Sbjct: 3 GSHHHHHHGSMACPLEKALDVMVSTFHKYSGKE-GDKFKLNKSELKELLTRELP-SFLGK 60
Query: 139 NDIQHLIQNILDEADLDDDGALSFAEFELFI 169
+ Q ++ D + D + F E+ +F+
Sbjct: 61 RTDEAAFQKLMSNLDSNRDNEVDFQEYCVFL 91
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 31.4 bits (70), Expect = 0.17
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 6/65 (9%)
Query: 107 FRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFE 166
R D + D+ + +LK + L + D + + + D +L E E
Sbjct: 17 LRKADKNKDNKMNFKELKDFLKELN--IQVDDGYARKIFRE----CDHSQTDSLEDEEIE 70
Query: 167 LFIEK 171
F +
Sbjct: 71 TFYKM 75
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP:
a.39.1.1
Length = 78
Score = 29.2 bits (66), Expect = 0.17
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 113 DGD-DMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEK 171
+GD + L +LKQ+I L + ++ E D + DG +SF EF++ ++K
Sbjct: 20 EGDPNQLSKEELKQLIQAEFP-SLLKG---PRTLDDLFQELDKNGDGEVSFEEFQVLVKK 75
>2kvc_A Putative uncharacterized protein; structural genomics, seattle
structural genomi for infectious disease, ssgcid,
unknown function; NMR {Mycobacterium tuberculosis}
Length = 103
Score = 29.8 bits (67), Expect = 0.20
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 122 DLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDD 157
++K + + L DI +I + DE +D
Sbjct: 43 EVKAVANELMRLGDFDQIDIGVVITHFTDELPSPED 78
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural
genomics, PSI-B protein structure initiative, NEW YORK
structural genomics consortium; 1.54A {Homo sapiens}
PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Length = 93
Score = 29.4 bits (66), Expect = 0.21
Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 113 DGD-DMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFI 169
+GD L ++LK+++ R L + Q ++ D + D + F E+ +F+
Sbjct: 23 EGDKFKLNKSELKELLTRELP-SFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFL 79
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response, metal
binding PR; 1.73A {Homo sapiens} PDB: 1odb_A* 2wc8_A
2wcf_A 2wce_A 1e8a_A 1gqm_A
Length = 95
Score = 29.4 bits (66), Expect = 0.25
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 113 DGD-DMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFI 169
G D L +LKQ++ + + D + +I I D + D + F EF +
Sbjct: 25 KGHFDTLSKGELKQLLTKELANTIKNIKD-KAVIDEIFQGLDANQDEQVDFQEFISLV 81
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type
four-helix bundle, metal binding protein; NMR {Rattus
norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A
2l0p_A 2jpt_A
Length = 93
Score = 29.0 bits (65), Expect = 0.28
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 113 DGD-DMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEK 171
+GD L +LK ++ L + I+ E D + DG + F EF + +
Sbjct: 22 EGDKYKLSKKELKDLLQTELS-SFLDVQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor
supressor, CAL binding protein; 1.30A {Homo sapiens}
PDB: 2rgi_A 4duq_A
Length = 98
Score = 29.0 bits (65), Expect = 0.30
Identities = 10/58 (17%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 113 DGD-DMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFI 169
+GD L ++K+++ + + D + ++ ++ D + D + F E+ +F+
Sbjct: 24 EGDKFKLSKGEMKELLHKELPSFVGEKVD-EEGLKKLMGSLDENSDQQVDFQEYAVFL 80
>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100
protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2 PDB:
2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A
Length = 100
Score = 29.0 bits (65), Expect = 0.36
Identities = 9/56 (16%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 115 DDMLGMTDLKQIIDR-LTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFI 169
DD + L ++ D + + ++ ++ D ++D + F+EF +
Sbjct: 23 DDKIDKPSLLTMMKENFPNFLSACDKKGTNYLADVFEKKDKNEDKKIDFSEFLSLL 78
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100
family, EF-hand protein, complex (ligand/annexin),
ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2
PDB: 1nsh_A
Length = 99
Score = 29.0 bits (65), Expect = 0.37
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 113 DGD-DMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFIEK 171
DG+ + T+ ++ + ++ ++ + DLD DG L F EF I
Sbjct: 26 DGNNTKISKTEFLIFMNTELA-AFTQNQKDPGVLDRMMKKLDLDSDGQLDFQEFLNLIGG 84
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding
protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A
1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X*
3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A*
3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Length = 92
Score = 28.6 bits (64), Expect = 0.39
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 113 DGD-DMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFI 169
+GD L ++LK++I+ H L + Q ++ +++ D + DG F EF F+
Sbjct: 22 EGDKHKLKKSELKELINNELS-HFLEEIKEQEVVDKVMETLDSNGDGECDFQEFMAFV 78
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2,
protein structure initiative, northeast structural
genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Length = 121
Score = 29.0 bits (65), Expect = 0.40
Identities = 9/60 (15%), Positives = 18/60 (30%), Gaps = 10/60 (16%)
Query: 108 RIFD--FDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
+ F + + + L + I AD+++DG + EF
Sbjct: 37 QQFHSLKPISGFITGDQARNFFFQS----GLPQPVLAQ----IWALADMNNDGRMDQVEF 88
>3myd_A Flagellar biosynthesis protein FLHA; flagellar export, type III
secretion, cytoplasmic FRAG protein transport; 2.40A
{Helicobacter pylori}
Length = 365
Score = 29.7 bits (67), Expect = 0.54
Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 98 PKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTH--------HLSDNDIQHLIQNIL 149
P V A H + +D + ++K +++RL + + I+ ++Q +L
Sbjct: 152 PSTVIATHTSELVKKYAEDFITKDEVKSLLERLAKDYPTIVEESKKIPTGAIRSVLQALL 211
Query: 150 DE 151
E
Sbjct: 212 HE 213
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1ozo_A
Length = 95
Score = 28.2 bits (63), Expect = 0.54
Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 113 DGD-DMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFI 169
+G L +LK ++++ L + + +L + D + D + F+EF +F+
Sbjct: 22 EGSTQTLTKGELKVLMEKELP-GFLQSGKDKDAVDKLLKDLDANGDAQVDFSEFIVFV 78
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein,
EF-hand, calcium regulation, oligomer neuronal
development, spine2; 2.03A {Danio rerio}
Length = 99
Score = 28.3 bits (63), Expect = 0.55
Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 113 DGD-DMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFI 169
+GD L +LK++++ L L++ I+++ D + D + F EF + +
Sbjct: 23 EGDKYKLSKGELKELLNAELT-DFLMSQKDPMLVEKIMNDLDSNKDNEVDFNEFVVLV 79
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH
domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A
1f8h_A 1ff1_A
Length = 106
Score = 28.2 bits (63), Expect = 0.66
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 9/59 (15%)
Query: 107 FRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
F + L +K ++ L + + + + +D+D DG L EF
Sbjct: 21 FDSLS-PVNGFLSGDKVKPVLLN----SKLPVDILGR----VWELSDIDHDGMLDRDEF 70
>1nub_A Basement membrane protein BM-40; extracellular module,
glycoprotein, anti-adhesive protein, C binding,
site-directed mutagenesis; HET: NAG; 2.80A {Homo
sapiens} SCOP: a.39.1.3 g.3.11.3 g.68.1.1 PDB: 2v53_A*
1bmo_A*
Length = 229
Score = 29.2 bits (64), Expect = 0.70
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 9/60 (15%)
Query: 107 FRIFDFDG-DDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
F D D L T+L + L ++H + DLD+D ++ E+
Sbjct: 161 FGQLDQHPIDGYLSHTELAPLRAPL--------IPMEHCTTRFFETCDLDNDKYIALDEW 212
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding
protein; 1.45A {Homo sapiens} PDB: 3nsi_A 1kso_A 3nsk_A
3nsl_A
Length = 101
Score = 27.9 bits (62), Expect = 0.93
Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 113 DGD-DMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFI 169
GD L +LK+++ + T ++ + + D + D + F E+ +
Sbjct: 23 CGDKYKLCQAELKELLQKELATWTPTEFR-ECDYNKFMSVLDTNKDCEVDFVEYVRSL 79
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo
sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Length = 139
Score = 28.0 bits (62), Expect = 1.0
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 9/59 (15%)
Query: 107 FRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEF 165
F + + + K+ + + L + + I AD+D DG L EF
Sbjct: 57 FYTLS-PVNGKITGANAKKEMVKS----KLPNTVLGK----IWKLADVDKDGLLDDEEF 106
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein;
2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A
2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Length = 106
Score = 27.5 bits (61), Expect = 1.3
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 142 QHLIQNILDEADLDDDGALSFAEFELFI 169
+ + D++ D L F E+ I
Sbjct: 61 VGSLDEKMKSLDVNQDSELKFNEYWRLI 88
>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic
subunit alpha isoform; protein-protein complex, heat
repeat, signaling protein; HET: OKA; 2.60A {Homo
sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C*
3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C*
2nyl_C*
Length = 309
Score = 27.9 bits (63), Expect = 1.7
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 115 DDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQ 146
D+ + +L Q I++L LS++ ++ L +
Sbjct: 2 DEKVFTKELDQWIEQLNECKQLSESQVKSLCE 33
>2x49_A INVA, invasion protein INVA; protein transport, transport,
pathogenesis; 1.50A {Salmonella enterica subsp} PDB:
2x4a_A* 3lw9_A
Length = 333
Score = 27.7 bits (62), Expect = 2.0
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 9/45 (20%)
Query: 116 DMLGMTDLKQIIDRLTGTH---------HLSDNDIQHLIQNILDE 151
+ G+ + K ++D+L H + I ++Q +L E
Sbjct: 143 EYFGIQETKHMLDQLEAKFPDLLKEVLRHATVQRISEVLQRLLSE 187
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium,
polymorphism, structural genomics, spine2, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
2kay_A
Length = 92
Score = 26.6 bits (59), Expect = 2.3
Identities = 6/28 (21%), Positives = 15/28 (53%)
Query: 142 QHLIQNILDEADLDDDGALSFAEFELFI 169
+ I +++ D + D + F E+ +F+
Sbjct: 49 ESSIDDLMKSLDKNSDQEIDFKEYSVFL 76
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 27.6 bits (60), Expect = 3.1
Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 11/100 (11%)
Query: 67 DRICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQI 126
RI I + G TF+ F+D MS + + +F+I + + + +L+
Sbjct: 764 ARIMSIVDPNRMGVVTFQAFIDFMSRETADTDTADQVMASFKILA-GDKNYITVDELR-- 820
Query: 127 IDRLTGTHHLSDNDIQHLIQNILDEADLD-DDGALSFAEF 165
L + ++ I + D GAL + F
Sbjct: 821 -------RELPPDQAEYCIARMAPYNGRDAVPGALDYMSF 853
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell
membrane, hydrolase, MEMB protease, thiol protease,
phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A
1df0_A 1u5i_A 1kfu_L 1kfx_L
Length = 714
Score = 27.5 bits (60), Expect = 3.6
Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 6/118 (5%)
Query: 71 HIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDM-LGMTDLKQIIDR 129
+FS T +D ++ E+ + + G+D + +L+ I+ R
Sbjct: 500 RVFSEKKADYQTVDDEIEANIEEIEANEEDIGDGFRRLFAQLAGEDAEISAFELQTILRR 559
Query: 130 LTGTHHLSDNDI--QHLIQNILDEADLDDDGALSFAEFELFIEKSQDFAKWTSIQREY 185
+ +D + ++D D D G L EF + K Q K+ I RE
Sbjct: 560 VLAKREDIKSDGFSIETCKIMVDMLDEDGSGKLGLKEFYILWTKIQ---KYQKIYREI 614
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB:
1mr8_A
Length = 93
Score = 25.9 bits (57), Expect = 3.9
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 145 IQNILDEADLDDDGALSFAEFELFIEK 171
E D++ DGA++F EF + + K
Sbjct: 51 ADVWFKELDINTDGAVNFQEFLILVIK 77
>3qr9_A Anthranilate phosphoribosyltransferase; anthranilic acids, M
tryptophan, magnesium binding, phosphoribosyl
pyrophosphate transferase; 1.87A {Mycobacterium
tuberculosis} PDB: 1zvw_A* 2bpq_A
Length = 377
Score = 26.8 bits (60), Expect = 4.5
Identities = 7/37 (18%), Positives = 13/37 (35%)
Query: 114 GDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILD 150
+ + QI+ RLT L+ + I+
Sbjct: 17 KAEAASVPSWPQILGRLTDNRDLARGQAAWAMDQIMT 53
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free,
signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A
2cnp_A 2jtt_A
Length = 90
Score = 25.5 bits (56), Expect = 4.5
Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 113 DGD-DMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQNILDEADLDDDGALSFAEFELFI 169
+GD L +LK++I + I ++++ D + D ++F E+ F+
Sbjct: 23 EGDKHTLSKKELKELIQKELTIGSKLQ---DAEIARLMEDLDRNKDQEVNFQEYVTFL 77
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor,
transferase-transferase inhibitor CO; HET: ANP; 1.30A
{Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A*
3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A
3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A*
3owj_A* 3owk_A* ...
Length = 330
Score = 26.5 bits (59), Expect = 5.2
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 6/29 (20%)
Query: 121 TDLKQIIDRLTGTHHLSDNDIQHLIQNIL 149
TD KQ+ LT D DI+ + IL
Sbjct: 118 TDFKQLYQTLT------DYDIRFYMYEIL 140
>3v1h_A 1-phosphatidylinositol phosphodiesterase; PI-cation, TIM barrel,
phospholipase, lyase; HET: INS; 1.90A {Staphylococcus
aureus subsp} PDB: 3v18_A 3v16_A*
Length = 306
Score = 26.6 bits (58), Expect = 5.2
Identities = 6/43 (13%), Positives = 12/43 (27%)
Query: 57 YPQLRVNPFGDRICHIFSSSHDGDCTFEDFLDMMSVFSESAPK 99
+ +R D + + FLD + + P
Sbjct: 61 FFDIRGRASADNMISVHHGMVYLHHELGKFLDDAKYYLSAYPN 103
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH,
membrane fusion, trafficking, transmembrane, membrane
protein; 3.20A {Pyrococcus horikoshii}
Length = 188
Score = 26.0 bits (58), Expect = 7.0
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 9/41 (21%)
Query: 117 MLGMTDLKQIIDRLTGTHHLSD-----NDIQHLIQNILDEA 152
+ T L+ +I G HL + + + +Q I+DEA
Sbjct: 60 QISQTTLRSVI----GQAHLDELLSERDKLNMQLQRIIDEA 96
>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase,
immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3
Length = 521
Score = 26.3 bits (58), Expect = 7.8
Identities = 8/53 (15%), Positives = 18/53 (33%)
Query: 94 SESAPKPVKAEHAFRIFDFDGDDMLGMTDLKQIIDRLTGTHHLSDNDIQHLIQ 146
++ K V + R+ + D G + + L L ++ +I
Sbjct: 14 TDRVVKAVPFPPSHRLTAKEVFDNDGKPRVDILKAHLMKEGRLEESVALRIIT 66
>1out_B Hemoglobin I; heme, oxygen transport, respiratory protein,
erythrocyte; HET: HEM; 2.30A {Oncorhynchus mykiss} SCOP:
a.1.1.2 PDB: 1ouu_B*
Length = 146
Score = 25.6 bits (55), Expect = 8.8
Identities = 9/77 (11%), Positives = 22/77 (28%)
Query: 59 QLRVNPFGDRICHIFSSSHDGDCTFEDFLDMMSVFSESAPKPVKAEHAFRIFDFDGDDML 118
++ ++ G + + +S + P A H + +
Sbjct: 17 KVNIDEIGPLALARVLIVYPWTQRYFGSFGNVSTPAAIMGNPKVAAHGKVVCGALDKAVK 76
Query: 119 GMTDLKQIIDRLTGTHH 135
M ++ L+ TH
Sbjct: 77 NMGNILATYKSLSETHA 93
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 26.3 bits (57), Expect = 8.8
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 148 ILDEADLDDDGALSFAEF 165
I +D+D DG L EF
Sbjct: 496 IWKLSDVDRDGMLDDEEF 513
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.399
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,017,284
Number of extensions: 180659
Number of successful extensions: 1279
Number of sequences better than 10.0: 1
Number of HSP's gapped: 937
Number of HSP's successfully gapped: 285
Length of query: 189
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 101
Effective length of database: 4,244,745
Effective search space: 428719245
Effective search space used: 428719245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.5 bits)