Query psy17874
Match_columns 144
No_of_seqs 70 out of 72
Neff 3.5
Searched_HMMs 46136
Date Sat Aug 17 01:12:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17874.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17874hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3356|consensus 100.0 1.2E-78 2.6E-83 468.0 10.5 143 1-144 1-143 (147)
2 PF04756 OST3_OST6: OST3 / OST 99.9 6.1E-24 1.3E-28 163.2 -0.9 124 11-138 9-160 (160)
3 KOG2603|consensus 97.3 0.00018 3.9E-09 63.3 2.6 94 37-134 216-313 (331)
4 PF09881 DUF2108: Predicted me 62.7 16 0.00035 26.2 4.2 41 88-132 6-46 (72)
5 PF06679 DUF1180: Protein of u 50.5 23 0.00049 28.6 3.6 30 109-138 88-117 (163)
6 PF09971 DUF2206: Predicted me 47.1 9 0.0002 33.9 1.0 43 29-72 216-260 (367)
7 COG5235 RFA2 Single-stranded D 34.6 21 0.00046 30.8 1.2 36 40-76 9-46 (258)
8 PF13807 GNVR: G-rich domain o 33.9 84 0.0018 21.4 4.0 27 100-126 40-67 (82)
9 PF06522 B12D: NADH-ubiquinone 28.9 77 0.0017 21.9 3.1 22 119-140 9-30 (73)
10 PF11711 Tim54: Inner membrane 28.9 35 0.00076 30.8 1.7 35 10-52 5-39 (382)
11 COG4039 Predicted membrane pro 27.7 33 0.00071 25.4 1.1 39 89-131 7-45 (86)
12 KOG0131|consensus 26.8 39 0.00084 28.5 1.5 31 53-85 123-165 (203)
13 PRK02557 psbE cytochrome b559 26.6 46 0.001 24.4 1.7 41 31-72 25-65 (81)
14 TIGR01332 cyt_b559_alpha cytoc 26.3 45 0.00098 24.4 1.6 41 31-72 24-64 (80)
15 PF04976 DmsC: DMSO reductase 24.8 87 0.0019 26.2 3.3 54 85-140 85-138 (276)
16 PF11346 DUF3149: Protein of u 24.7 1.3E+02 0.0029 19.3 3.4 21 119-140 15-35 (42)
17 PF05191 ADK_lid: Adenylate ki 23.3 57 0.0012 20.0 1.4 23 46-68 7-29 (36)
18 COG3766 Predicted membrane pro 22.7 46 0.001 26.4 1.2 61 80-143 37-101 (133)
19 KOG1558|consensus 22.2 62 0.0013 28.5 2.0 46 81-126 270-318 (327)
20 PF02535 Zip: ZIP Zinc transpo 22.1 76 0.0016 25.6 2.4 47 81-127 265-312 (317)
21 CHL00064 psbE photosystem II p 21.7 56 0.0012 24.1 1.3 41 31-72 25-65 (83)
22 PF13965 SID-1_RNA_chan: dsRNA 21.2 73 0.0016 30.1 2.3 32 81-112 321-368 (570)
No 1
>KOG3356|consensus
Probab=100.00 E-value=1.2e-78 Score=468.01 Aligned_cols=143 Identities=65% Similarity=1.178 Sum_probs=141.8
Q ss_pred CccccccccccccCCCccccCCCccccCchhhhHHHHHhHhhhhccceeeeeeecCCCCCccccCCCCeeeeEEeecccc
Q psy17874 1 METLIGLPFALLQVPNLKLKRPGWFHQPSAMVTFSLVLVSYFLVTGGIIYDVIIEPPSVGSTTDEHGHSRPVAFMPYRVN 80 (144)
Q Consensus 1 me~l~~~pf~~l~~P~lklk~p~wi~~Ps~m~v~aLV~vSYFlitgGiiYdvI~ePP~iG~~~De~G~~rPV~F~~~rvN 80 (144)
||+|+++||++|||||+|||+|+ +++|||||||+|+++||||+|||+|||+|+|||++||+|||+||||||||++||||
T Consensus 1 fhil~~vpf~~lr~prlrlk~ps-f~lps~mtv~alivvsyflv~~g~iydvivepp~igs~~d~~g~~rpv~fla~rvn 79 (147)
T KOG3356|consen 1 FHILRIVPFSFLRPPRLRLKLPS-FTLPSPMTVYALIVVSYFLVTGGIIYDVIVEPPSIGSMTDEHGHQRPVAFLAGRVN 79 (147)
T ss_pred CceEEEeceeeecCcceeccCCC-ccCCCchHHHHHHHHHHHHhcccEEEEEEecCCCCCcccccCCcCcceEEEecccc
Confidence 68999999999999999999999 79999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHhhcceeEEeeCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy17874 81 GQYIMEGLASSFLFSIGGIGFIILDRTHSPTTPKLNRILLICVGFLCVIISFLACWVFMRMKLP 144 (144)
Q Consensus 81 gQyI~EGLassflFtmGglGfIild~~n~~n~~k~nr~~~~~~G~~~vl~sf~~a~vF~rmklp 144 (144)
||||||||+|||+||+||+|||+||++|+||+||+||++++++|++||++||+|||+|||||+|
T Consensus 80 gqyimeglas~flf~lgglg~imld~a~~~n~~k~~r~~~~~~g~~~vlls~~ma~vfmrmklp 143 (147)
T KOG3356|consen 80 GQYIMEGLASSFLFTLGGLGFIMLDRANAPNIPKLNRFLLLFIGFVCVLLSFFMARVFMRMKLP 143 (147)
T ss_pred ceeeehhhcccceEeecCcEEEEEecccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 9999999999999999999999999999999999999999999999999999999999999998
No 2
>PF04756 OST3_OST6: OST3 / OST6 family; InterPro: IPR021149 During N-linked glycosylation of proteins, oligosaccharide chains are assembled on the carrier molecule dolichyl pyrophosphate in the following order: 2 molecules of N-acetylglucosamine (GlcNAc), 9 molecules of mannose, and 3 molecules of glucose. These 14-residue oligosaccharide cores are then transferred to asparagine residues on nascent polypeptide chains in the endoplasmic reticulum (ER). As proteins progress through the Golgi apparatus, the oligosaccharide cores are modified by trimming and extension to generate a diverse array of glycosylated proteins [, ]. The oligosaccharyl transferase complex (OST complex) 2.4.1.119 from EC transfers 14-sugar branched oligosaccharides from dolichyl pyrophosphate to asparagine residues []. The complex contains nine protein subunits: Ost1p, Ost2p, Ost3p, Ost4p, Ost5p, Ost6p, Stt3p, Swp1p, and Wbp1p, all of which are integral membrane proteins of the ER. The OST complex interacts with the Sec61p pore complex [] involved in protein import into the ER. This entry represents subunits OST3 and OST6. OST3 is homologous to OST6 [], and several lines of evidence indicate that they are alternative members of the OST complex. Disruption of both OST3 and OST6 causes severe underglycosylation of soluble and membrane-bound glycoproteins and a defect in the assembly of the complex. Hence, the function of these genes seems to be essential for recruiting a fully active complex necessary for efficient N-glycosylation []. This entry also includes the magnesium transporter protein 1, also known as OST3 homologue B, which might be involved in N-glycosylation through its association with the oligosaccharyl transferase (OST) complex.; PDB: 3G7Y_A 3G9B_A 3GA4_A.
Probab=99.87 E-value=6.1e-24 Score=163.18 Aligned_cols=124 Identities=38% Similarity=0.675 Sum_probs=5.4
Q ss_pred cccCCCccccCCCccccCchhhhHHHHHhH--------------------------hhhhccceeeeeeecCCCCCcccc
Q psy17874 11 LLQVPNLKLKRPGWFHQPSAMVTFSLVLVS--------------------------YFLVTGGIIYDVIIEPPSVGSTTD 64 (144)
Q Consensus 11 ~l~~P~lklk~p~wi~~Ps~m~v~aLV~vS--------------------------YFlitgGiiYdvI~ePP~iG~~~D 64 (144)
..++|+.++++|++.+.|+.++++++++++ |++.+||..||.|++||.+|...|
T Consensus 9 ~t~i~~~~i~~P~~~~~~~~~i~~~i~~~~~~~~~k~~~~~~~~~r~lw~~~sl~~~~~~~SG~mfn~Ir~~P~~~~~~~ 88 (160)
T PF04756_consen 9 RTGIPIFKIYRPPNYSKPSIFITFFIVFVAVFLYIKRSILPFLRSRFLWAVLSLIIILLSTSGYMFNIIRGPPFIGRDPD 88 (160)
T ss_dssp HHHHHT-------S------------------------------------------------------------------
T ss_pred HcCCCeeEEeCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCC
Confidence 567889999999988999888998888888 999999999999999999866555
Q ss_pred CCCCeeeeEEeecccchhhhhHHHHHHHHHHhhcceeEEeeCCC--CCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy17874 65 EHGHSRPVAFMPYRVNGQYIMEGLASSFLFSIGGIGFIILDRTH--SPTTPKLNRILLICVGFLCVIISFLACWVF 138 (144)
Q Consensus 65 e~G~~rPV~F~~~rvNgQyI~EGLassflFtmGglGfIild~~n--~~n~~k~nr~~~~~~G~~~vl~sf~~a~vF 138 (144)
+ ++++.|++++.|+||++||++.|+++++.|+|+++|++.. .++.+|.+|..++. |+.+++.+|+++++|
T Consensus 89 g---~~~i~f~~g~~~~QfgiE~~iv~~ly~~la~~~i~L~~~~~~~~~~~~~~~~~~~~-~~~~~~~~f~~~~~f 160 (160)
T PF04756_consen 89 G---SRPIYFFSGGSQGQFGIEGQIVSFLYGVLALGFILLIYAAPKKKNSPKQRRILLIS-GLALVIYSFFSYIVF 160 (160)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred C---CCceEEecCCCCcchHHHHHHHHHHHHHHHHHHHHhhhhccccCCcchhhhhHHHH-HHHHHHHHHHHHhhC
Confidence 5 8999999999999999999999999999999999999976 56778888887665 899999999999887
No 3
>KOG2603|consensus
Probab=97.25 E-value=0.00018 Score=63.27 Aligned_cols=94 Identities=20% Similarity=0.384 Sum_probs=69.5
Q ss_pred HHhHhhhhccceeeeeeecCCCCCccccCCCCeeeeEEeecccchhhhhHHHHHHHHHHhhcceeEEeeCCCCC--Cc--
Q psy17874 37 VLVSYFLVTGGIIYDVIIEPPSVGSTTDEHGHSRPVAFMPYRVNGQYIMEGLASSFLFSIGGIGFIILDRTHSP--TT-- 112 (144)
Q Consensus 37 V~vSYFlitgGiiYdvI~ePP~iG~~~De~G~~rPV~F~~~rvNgQyI~EGLassflFtmGglGfIild~~n~~--n~-- 112 (144)
-+.-||..++|.-++.|++||-+ .+|++ ..| +.|....-..|+++|+.+.|++++.=++|++.|+..... ++
T Consensus 216 sl~i~f~~iSG~M~n~IR~~P~~--~~dp~-~~~-~~f~~g~Sq~Qf~aEtfiV~lly~~v~ll~vll~~~~~~~~~~~~ 291 (331)
T KOG2603|consen 216 SLFIVFFMISGQMWNHIRGPPYA--IKDPH-TGK-VVFIHGSSQAQFGAETFIVGLLYGVVSLLMVLLTEAATSSKSIDY 291 (331)
T ss_pred HHhheeeeechhHHHHhcCCcce--eeCCC-CCe-EEEEeCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcchhH
Confidence 34457788999999999999995 67774 233 458888999999999999999999999999997764322 22
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q psy17874 113 PKLNRILLICVGFLCVIISFLA 134 (144)
Q Consensus 113 ~k~nr~~~~~~G~~~vl~sf~~ 134 (144)
+|.+-.+.++++++++.-|+..
T Consensus 292 ~k~~~l~~~~i~~~~vFfs~~l 313 (331)
T KOG2603|consen 292 QKRKMLLIAGLSCVAVFFSVLL 313 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3555555555555555555554
No 4
>PF09881 DUF2108: Predicted membrane protein (DUF2108); InterPro: IPR019213 This entry is found in various hypothetical archaeal proteins, has no known function.
Probab=62.66 E-value=16 Score=26.17 Aligned_cols=41 Identities=32% Similarity=0.417 Sum_probs=33.9
Q ss_pred HHHHHHHHhhcceeEEeeCCCCCCchhhHHHHHHHHHHHHHHHHH
Q psy17874 88 LASSFLFSIGGIGFIILDRTHSPTTPKLNRILLICVGFLCVIISF 132 (144)
Q Consensus 88 LassflFtmGglGfIild~~n~~n~~k~nr~~~~~~G~~~vl~sf 132 (144)
+.|.++..+||+|-+...+. ..|+--+.++..|+.+.++|+
T Consensus 6 li~~~~~iiG~ig~i~~~~p----~~KlIm~~ll~~G~i~~Iva~ 46 (72)
T PF09881_consen 6 LISAACAIIGAIGAILHRDP----IDKLIMFALLEAGIIGFIVAF 46 (72)
T ss_pred HHHHHHHHHhhheeeeecCc----hHHHHHHHHHHccHHHHHHHh
Confidence 67899999999998886543 459999999999999888765
No 5
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=50.52 E-value=23 Score=28.56 Aligned_cols=30 Identities=33% Similarity=0.629 Sum_probs=26.0
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy17874 109 SPTTPKLNRILLICVGFLCVIISFLACWVF 138 (144)
Q Consensus 109 ~~n~~k~nr~~~~~~G~~~vl~sf~~a~vF 138 (144)
.+|.|-+.|.++.++|+.+.++.||.-|+|
T Consensus 88 ~~d~~~l~R~~~Vl~g~s~l~i~yfvir~~ 117 (163)
T PF06679_consen 88 SPDSPMLKRALYVLVGLSALAILYFVIRTF 117 (163)
T ss_pred cCCccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 356677899999999999999999998876
No 6
>PF09971 DUF2206: Predicted membrane protein (DUF2206); InterPro: IPR018701 This family of predicted membrane proteins from archaea has no known function.
Probab=47.10 E-value=9 Score=33.94 Aligned_cols=43 Identities=26% Similarity=0.597 Sum_probs=30.6
Q ss_pred chhhhHHHHHhHhhhhccceeeeeeecCCCCCccccCCCC--eeee
Q psy17874 29 SAMVTFSLVLVSYFLVTGGIIYDVIIEPPSVGSTTDEHGH--SRPV 72 (144)
Q Consensus 29 s~m~v~aLV~vSYFlitgGiiYdvI~ePP~iG~~~De~G~--~rPV 72 (144)
.+.-++++.++.++|..+|.+|.+..+||.- ..-|.++. .+|+
T Consensus 216 ~~~ki~~ifl~v~lLfnsG~i~~i~~d~p~s-~~L~~~~~~~~~~~ 260 (367)
T PF09971_consen 216 NSFKILSIFLAVFLLFNSGFIYEIFGDPPTS-ISLDKNSDKNSYPY 260 (367)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHhcCCCCc-eeeccCccccccee
Confidence 3345667778889999999999999887763 44444433 3776
No 7
>COG5235 RFA2 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [DNA replication, recombination, and repair]
Probab=34.60 E-value=21 Score=30.84 Aligned_cols=36 Identities=28% Similarity=0.453 Sum_probs=24.3
Q ss_pred HhhhhccceeeeeeecCCCCCccccCC--CCeeeeEEee
Q psy17874 40 SYFLVTGGIIYDVIIEPPSVGSTTDEH--GHSRPVAFMP 76 (144)
Q Consensus 40 SYFlitgGiiYdvI~ePP~iG~~~De~--G~~rPV~F~~ 76 (144)
|||.||+|-++|--..||. +-..... ..-|||.+=+
T Consensus 9 ~~~~it~g~~~~~~s~p~~-drseg~~~vntLrpvTIKQ 46 (258)
T COG5235 9 SLFFITRGQIFGTGSPPPM-DRSEGGYIVNTLRPVTIKQ 46 (258)
T ss_pred heeeeeccceecCCCCCCC-CccccCceeeeeeeeEHHH
Confidence 8999999999999855554 4322222 4678886543
No 8
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=33.85 E-value=84 Score=21.43 Aligned_cols=27 Identities=26% Similarity=0.561 Sum_probs=15.5
Q ss_pred eeEEeeCCCCCCch-hhHHHHHHHHHHH
Q psy17874 100 GFIILDRTHSPTTP-KLNRILLICVGFL 126 (144)
Q Consensus 100 GfIild~~n~~n~~-k~nr~~~~~~G~~ 126 (144)
.+-++|.+..|+.| +-+|.+.+.+|++
T Consensus 40 ~~~ivd~A~~P~~P~~P~~~lil~l~~~ 67 (82)
T PF13807_consen 40 NVRIVDPAIVPDKPVSPKRALILALGLF 67 (82)
T ss_pred CceeccccccCCCCCCCcHHHHHHHHHH
Confidence 45678888777644 3344444444443
No 9
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=28.88 E-value=77 Score=21.86 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy17874 119 LLICVGFLCVIISFLACWVFMR 140 (144)
Q Consensus 119 ~~~~~G~~~vl~sf~~a~vF~r 140 (144)
|+.++|++++..+|+++|..++
T Consensus 9 L~~~vg~a~~~a~~~~~r~l~~ 30 (73)
T PF06522_consen 9 LFVIVGVAVGGATFYLYRLLLT 30 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHhc
Confidence 4568999999999999996643
No 10
>PF11711 Tim54: Inner membrane protein import complex subunit Tim54; InterPro: IPR021056 Mitochondrial function depends on the import of hundreds of different proteins synthesised in the cytosol. Protein import is a multi-step pathway which includes the binding of precursor proteins to surface receptors, translocation of the precursor across one or both mitochondrial membranes, and folding and assembly of the imported protein inside the mitochondrion. Most precursor proteins carry amino-terminal targeting signals, called pre-sequences, and are imported into mitochondria via import complexes located in both the outer and the inner membrane (IM). The IM complex, TIM, is made up of at least two proteins which mediate translocation of proteins into the matrix by removing their signal peptide and another pair of proteins, Tim54 and Tim22, that insert the polytopic proteins, that carry internal targeting information, into the inner membrane [].
Probab=28.87 E-value=35 Score=30.81 Aligned_cols=35 Identities=37% Similarity=0.561 Sum_probs=21.3
Q ss_pred ccccCCCccccCCCccccCchhhhHHHHHhHhhhhccceeeee
Q psy17874 10 ALLQVPNLKLKRPGWFHQPSAMVTFSLVLVSYFLVTGGIIYDV 52 (144)
Q Consensus 10 ~~l~~P~lklk~p~wi~~Ps~m~v~aLV~vSYFlitgGiiYdv 52 (144)
..+-.|++|.|+|+ =++ |+. --|+.| ++||++||-
T Consensus 5 r~mGiP~~~~kLPS-RNW---mIF-~tV~~s---~~~~i~YDr 39 (382)
T PF11711_consen 5 RMMGIPNIRPKLPS-RNW---MIF-WTVTGS---ITGAIIYDR 39 (382)
T ss_pred HhcCCCcccccCCC-CCe---eeh-hhHhhh---hhheeEecH
Confidence 44567888666666 222 343 334443 579999994
No 11
>COG4039 Predicted membrane protein [Function unknown]
Probab=27.74 E-value=33 Score=25.39 Aligned_cols=39 Identities=31% Similarity=0.530 Sum_probs=28.6
Q ss_pred HHHHHHHhhcceeEEeeCCCCCCchhhHHHHHHHHHHHHHHHH
Q psy17874 89 ASSFLFSIGGIGFIILDRTHSPTTPKLNRILLICVGFLCVIIS 131 (144)
Q Consensus 89 assflFtmGglGfIild~~n~~n~~k~nr~~~~~~G~~~vl~s 131 (144)
.|+.--.+||.|.|+..+- ..|.--+.++=+|++|++.|
T Consensus 7 ~s~t~cilG~ig~iL~~~P----l~Kiim~aLl~~Gmi~~iaa 45 (86)
T COG4039 7 TSGTACILGGIGTILHRDP----LNKIIMIALLEIGMICAIAA 45 (86)
T ss_pred ccceeeeecceeEEEecCc----HHHHHHHHHHhcchhhhhhh
Confidence 3444567899998886543 44777788888999988765
No 12
>KOG0131|consensus
Probab=26.77 E-value=39 Score=28.51 Aligned_cols=31 Identities=35% Similarity=0.845 Sum_probs=23.2
Q ss_pred eecCCCCCccccC-CCCeeeeEEeecc-----------cchhhhh
Q psy17874 53 IIEPPSVGSTTDE-HGHSRPVAFMPYR-----------VNGQYIM 85 (144)
Q Consensus 53 I~ePP~iG~~~De-~G~~rPV~F~~~r-----------vNgQyI~ 85 (144)
+..||.+ +.|+ +|+.++-+|.-|+ +||||+.
T Consensus 123 l~~~P~i--~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~ 165 (203)
T KOG0131|consen 123 LISPPKI--MRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLC 165 (203)
T ss_pred cccCCcc--cccccCCCCCCCeEEechhHHHHHHHHHHhccchhc
Confidence 4588885 7786 5899998888775 6777764
No 13
>PRK02557 psbE cytochrome b559 subunit alpha; Provisional
Probab=26.65 E-value=46 Score=24.45 Aligned_cols=41 Identities=20% Similarity=0.404 Sum_probs=29.6
Q ss_pred hhhHHHHHhHhhhhccceeeeeeecCCCCCccccCCCCeeee
Q psy17874 31 MVTFSLVLVSYFLVTGGIIYDVIIEPPSVGSTTDEHGHSRPV 72 (144)
Q Consensus 31 m~v~aLV~vSYFlitgGiiYdvI~ePP~iG~~~De~G~~rPV 72 (144)
.|+=+|...-+.+|..|..||+-..|-+-.+-+.++ .+-|+
T Consensus 25 ITIPsLFiaGwLFVstGLAYdvFGtPrpneYft~~r-q~~pl 65 (81)
T PRK02557 25 ITIPALFIAGWLFVSTGLAYDAFGTPRPDEYFTQSR-SKAPI 65 (81)
T ss_pred echhHHHhhhhheeecCceeeccCCCCccccccccc-ccCcc
Confidence 344466666777888999999998887765655554 56665
No 14
>TIGR01332 cyt_b559_alpha cytochrome b559, alpha subunit. Sequences scoring between trusted and noise cutoffs are fragments.
Probab=26.32 E-value=45 Score=24.44 Aligned_cols=41 Identities=20% Similarity=0.376 Sum_probs=29.5
Q ss_pred hhhHHHHHhHhhhhccceeeeeeecCCCCCccccCCCCeeee
Q psy17874 31 MVTFSLVLVSYFLVTGGIIYDVIIEPPSVGSTTDEHGHSRPV 72 (144)
Q Consensus 31 m~v~aLV~vSYFlitgGiiYdvI~ePP~iG~~~De~G~~rPV 72 (144)
.|+=+|...-+.+|..|..||+-..|-+-.+-+.++ .+-|+
T Consensus 24 ITIPsLFiaGwLFVstGLAYdvFGtPrpneYft~~r-q~~pl 64 (80)
T TIGR01332 24 ITIPMLFIAGWLFVSTGLAYDAFGTPRPNEYFTQTR-QELPL 64 (80)
T ss_pred echhHHHhhhhheeecCcceeccCCCCccccccccc-ccCcc
Confidence 344466666777788999999998887765655554 56665
No 15
>PF04976 DmsC: DMSO reductase anchor subunit (DmsC); InterPro: IPR007059 The terminal electron transfer enzyme dimethyl sulphoxide reductase of Escherichia coli is a heterotrimeric enzyme composed of a membrane extrinsic catalytic dimer (DmsAB) and a membrane intrinsic polytopic anchor subunit (DmsC) []. This family represents DmsC.; GO: 0019645 anaerobic electron transport chain, 0016021 integral to membrane
Probab=24.77 E-value=87 Score=26.19 Aligned_cols=54 Identities=15% Similarity=0.309 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHhhcceeEEeeCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17874 85 MEGLASSFLFSIGGIGFIILDRTHSPTTPKLNRILLICVGFLCVIISFLACWVFMR 140 (144)
Q Consensus 85 ~EGLassflFtmGglGfIild~~n~~n~~k~nr~~~~~~G~~~vl~sf~~a~vF~r 140 (144)
=|.+.++..|.++++-.......+ ..+++++.+....+...++.-|.|+++...
T Consensus 85 rEi~~~~~f~~~~~l~~l~~~~~~--~~~~~~~~~~~~a~~~Gl~~v~~~~~iY~~ 138 (276)
T PF04976_consen 85 REILFAGLFFALAGLYWLLAWLFK--LSPALRKLLGWLAALAGLVFVFCMAMIYAS 138 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 399999988888877544332222 224666666566667777788888888763
No 16
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=24.67 E-value=1.3e+02 Score=19.32 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy17874 119 LLICVGFLCVIISFLACWVFMR 140 (144)
Q Consensus 119 ~~~~~G~~~vl~sf~~a~vF~r 140 (144)
+++.|.+.+++.+|+. |.|.|
T Consensus 15 Sl~vI~~~igm~~~~~-~~F~~ 35 (42)
T PF11346_consen 15 SLIVIVFTIGMGVFFI-RYFIR 35 (42)
T ss_pred HHHHHHHHHHHHHHHH-HHHHH
Confidence 3456677767777777 77776
No 17
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=23.29 E-value=57 Score=19.98 Aligned_cols=23 Identities=35% Similarity=0.638 Sum_probs=18.2
Q ss_pred cceeeeeeecCCCCCccccCCCC
Q psy17874 46 GGIIYDVIIEPPSVGSTTDEHGH 68 (144)
Q Consensus 46 gGiiYdvI~ePP~iG~~~De~G~ 68 (144)
-|-+|++...||.....=|..|.
T Consensus 7 Cg~~Yh~~~~pP~~~~~Cd~cg~ 29 (36)
T PF05191_consen 7 CGRIYHIEFNPPKVEGVCDNCGG 29 (36)
T ss_dssp TTEEEETTTB--SSTTBCTTTTE
T ss_pred CCCccccccCCCCCCCccCCCCC
Confidence 58999999999999888887764
No 18
>COG3766 Predicted membrane protein [Function unknown]
Probab=22.73 E-value=46 Score=26.43 Aligned_cols=61 Identities=23% Similarity=0.389 Sum_probs=42.7
Q ss_pred chhhhhHHHHHHHHHHhhcc-eeEE-e--eCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy17874 80 NGQYIMEGLASSFLFSIGGI-GFII-L--DRTHSPTTPKLNRILLICVGFLCVIISFLACWVFMRMKL 143 (144)
Q Consensus 80 NgQyI~EGLassflFtmGgl-GfIi-l--d~~n~~n~~k~nr~~~~~~G~~~vl~sf~~a~vF~rmkl 143 (144)
|.|-|=||=.+..+=+-|.+ |+.+ + .-+++.+.|..- .-..+|++.-+++|++.|..|. |+
T Consensus 37 e~elIk~GN~AaAlA~~G~llG~~~plassi~~s~sl~~~~--~Wg~~~~vvqLl~f~i~~~l~p-~l 101 (133)
T COG3766 37 EWELIKEGNTAAALALGGALLGYVIPLASSISHSVSLPDYL--AWGAIALVVQLLVFFIVRLLMP-DL 101 (133)
T ss_pred HHHHHHccCHHHHHHhcchHHhhHHHHHHHHHhccchHHHH--HHHHHHHHHHHHHHHHHHHHcC-cc
Confidence 57788899888888888776 7766 1 223333444433 3458899988999999888775 44
No 19
>KOG1558|consensus
Probab=22.16 E-value=62 Score=28.53 Aligned_cols=46 Identities=13% Similarity=0.293 Sum_probs=35.0
Q ss_pred hhhhhHHHHHHHHHHhhcceeEEeeCCCCCCc---hhhHHHHHHHHHHH
Q psy17874 81 GQYIMEGLASSFLFSIGGIGFIILDRTHSPTT---PKLNRILLICVGFL 126 (144)
Q Consensus 81 gQyI~EGLassflFtmGglGfIild~~n~~n~---~k~nr~~~~~~G~~ 126 (144)
.|.+.||+++|.+.=|+-+-++.-|..|++-. ..+..++.+++|+.
T Consensus 270 ~~gvL~alAaGtliY~~lvElla~ef~~~~~~~~~~~i~~~i~~~~G~a 318 (327)
T KOG1558|consen 270 TSGVLEALAAGTLIYVALVELLAAEFANPKMQSLKLQILKLIALLLGFA 318 (327)
T ss_pred HHHHHHHHhhhHhHHHHHHHHhHHHhcCchhhhHHHHHHHHHHHHHhHH
Confidence 68999999999999999999999999886521 23444445556665
No 20
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=22.06 E-value=76 Score=25.65 Aligned_cols=47 Identities=15% Similarity=0.217 Sum_probs=32.4
Q ss_pred hhhhhHHHHHHHHHHhhcceeEEeeCCCCCC-chhhHHHHHHHHHHHH
Q psy17874 81 GQYIMEGLASSFLFSIGGIGFIILDRTHSPT-TPKLNRILLICVGFLC 127 (144)
Q Consensus 81 gQyI~EGLassflFtmGglGfIild~~n~~n-~~k~nr~~~~~~G~~~ 127 (144)
.+-++.++++|.+.-++-.-++--+..+.++ ..++.+++.+++|++.
T Consensus 265 ~~~~~~a~aaG~~lyv~~~ell~~~~~~~~~~~~~~~~~~~~~~G~~~ 312 (317)
T PF02535_consen 265 VSGILLAFAAGTFLYVAFVELLPEEFHNKHSRKSRLLKFLGFLIGFLL 312 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Confidence 4668899999998888876655444444432 4567777777788774
No 21
>CHL00064 psbE photosystem II protein V
Probab=21.72 E-value=56 Score=24.13 Aligned_cols=41 Identities=24% Similarity=0.450 Sum_probs=29.3
Q ss_pred hhhHHHHHhHhhhhccceeeeeeecCCCCCccccCCCCeeee
Q psy17874 31 MVTFSLVLVSYFLVTGGIIYDVIIEPPSVGSTTDEHGHSRPV 72 (144)
Q Consensus 31 m~v~aLV~vSYFlitgGiiYdvI~ePP~iG~~~De~G~~rPV 72 (144)
.|+=+|...-+.+|..|..||+-..|-+-.+-+.++ ++-|+
T Consensus 25 ITIPslFiaGwLFVstGLAYdvFGtPrpneYft~~r-q~ipl 65 (83)
T CHL00064 25 ITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR-QEIPL 65 (83)
T ss_pred echhHHHhhchheeecCcceeccCCCCccccccccc-ccCcc
Confidence 344456666677788999999998888765655555 66666
No 22
>PF13965 SID-1_RNA_chan: dsRNA-gated channel SID-1
Probab=21.18 E-value=73 Score=30.10 Aligned_cols=32 Identities=31% Similarity=0.594 Sum_probs=25.9
Q ss_pred hhhhhHHHHH----------------HHHHHhhcceeEEeeCCCCCCc
Q psy17874 81 GQYIMEGLAS----------------SFLFSIGGIGFIILDRTHSPTT 112 (144)
Q Consensus 81 gQyI~EGLas----------------sflFtmGglGfIild~~n~~n~ 112 (144)
---++||+.| +||+.++++.++-+-+...|.+
T Consensus 321 ~~li~egi~sa~yh~CPn~~~fqfdt~fmyvi~~L~~lkiyq~RH~di 368 (570)
T PF13965_consen 321 LALIMEGILSACYHICPNRSNFQFDTSFMYVIAGLCMLKIYQKRHPDI 368 (570)
T ss_pred HHHHHHHHHHHHhhcCcCchhhHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 3456899986 7899999999999888777665
Done!