Query psy17874
Match_columns 144
No_of_seqs 70 out of 72
Neff 3.5
Searched_HMMs 29240
Date Sat Aug 17 01:13:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17874.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17874hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kcu_A Probable formate transp 29.4 33 0.0011 28.2 2.8 71 55-130 11-84 (285)
2 4fc4_A Nitrite transporter NIR 26.2 28 0.00096 28.3 1.8 53 78-130 22-74 (261)
3 3kly_A Putative formate transp 24.6 31 0.0011 28.2 1.8 71 55-130 10-83 (280)
4 3arc_E Cytochrome B559 subunit 15.9 36 0.0012 24.0 0.3 48 31-81 24-71 (83)
5 3arc_Z Photosystem II reaction 11.3 1E+02 0.0034 20.5 1.4 16 31-46 7-22 (62)
6 4a4y_A Protein MXIG; protein b 10.1 1.5E+02 0.0051 22.2 2.2 50 46-111 84-133 (146)
7 4g6v_A Adhesin/hemolysin; tRNA 9.2 1.2E+02 0.0043 23.9 1.5 27 47-84 75-101 (176)
8 3tds_E Formate/nitrite transpo 8.1 1.4E+02 0.0049 24.2 1.5 50 81-130 28-80 (268)
9 2l25_A Uncharacterized protein 7.0 2.5E+02 0.0085 20.3 2.2 33 47-80 104-137 (141)
10 2hly_A AGR_C_4178P, hypothetic 6.5 1.8E+02 0.006 23.6 1.3 25 56-81 181-205 (207)
No 1
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A
Probab=29.36 E-value=33 Score=28.16 Aligned_cols=71 Identities=13% Similarity=0.207 Sum_probs=36.9
Q ss_pred cCCCCCccccCCCCeeeeEEeecccchhhhhHHHHHHHHHHhhcceeEEeeCCCCC---CchhhHHHHHHHHHHHHHHH
Q psy17874 55 EPPSVGSTTDEHGHSRPVAFMPYRVNGQYIMEGLASSFLFSIGGIGFIILDRTHSP---TTPKLNRILLICVGFLCVII 130 (144)
Q Consensus 55 ePP~iG~~~De~G~~rPV~F~~~rvNgQyI~EGLassflFtmGglGfIild~~n~~---n~~k~nr~~~~~~G~~~vl~ 130 (144)
.|+.+-....+.|+.|- .|--.+|.+-|+.+|....+|++-...+.....+ ...|+--.+...+|+++|++
T Consensus 11 ~p~e~~~~~~~~g~~K~-----~~~~~~~~~~~ilAG~~I~~g~~~~~~v~~~~~~~~~g~~~ll~g~~F~vGL~lVvl 84 (285)
T 3kcu_A 11 LPAAMAKVAEEAGVYKA-----TKHPLKTFYLAITAGVFISIAFVFYITATTGTGTMPFGMAKLVGGICFSLGLILCVV 84 (285)
T ss_dssp -----------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSCHHHHHHHHHHHHTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHH
Confidence 45544444455665552 3556899999999999999998865554433322 22356555666778777665
No 2
>4fc4_A Nitrite transporter NIRC; alpha-helical inner membrane protein, ION channel, cytoplasm membrane, transport protein; HET: BOG; 2.40A {Salmonella enterica subsp}
Probab=26.17 E-value=28 Score=28.26 Aligned_cols=53 Identities=15% Similarity=0.107 Sum_probs=38.3
Q ss_pred ccchhhhhHHHHHHHHHHhhcceeEEeeCCCCCCchhhHHHHHHHHHHHHHHH
Q psy17874 78 RVNGQYIMEGLASSFLFSIGGIGFIILDRTHSPTTPKLNRILLICVGFLCVII 130 (144)
Q Consensus 78 rvNgQyI~EGLassflFtmGglGfIild~~n~~n~~k~nr~~~~~~G~~~vl~ 130 (144)
|-..+|.+-|+.+|....+|++-........++..+|+--.+...+|+++|++
T Consensus 22 ~~~~~~~~~~~~AG~~I~~g~~~~~~~~~~~~~~~~~ll~g~~F~vGl~lVvl 74 (261)
T 4fc4_A 22 NNPLGFWVSSAMAGAYVGLGIILIFTLGNLLDPSVRPLVMGATFGIALTLVII 74 (261)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHHHHHH
Confidence 44578999999999999999886555544444555666666666778887765
No 3
>3kly_A Putative formate transporter 1; membrane protein, channel, structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Vibrio cholerae} PDB: 3klz_A*
Probab=24.65 E-value=31 Score=28.20 Aligned_cols=71 Identities=14% Similarity=0.255 Sum_probs=38.8
Q ss_pred cCCCCCccccCCCCeeeeEEeecccchhhhhHHHHHHHHHHhhcceeEEeeCCCCCC---chhhHHHHHHHHHHHHHHH
Q psy17874 55 EPPSVGSTTDEHGHSRPVAFMPYRVNGQYIMEGLASSFLFSIGGIGFIILDRTHSPT---TPKLNRILLICVGFLCVII 130 (144)
Q Consensus 55 ePP~iG~~~De~G~~rPV~F~~~rvNgQyI~EGLassflFtmGglGfIild~~n~~n---~~k~nr~~~~~~G~~~vl~ 130 (144)
.|+.+-....+.|+.| +.|--.+|.+-++.+|....+|++-.........+. ..|+--.+...+|+++|++
T Consensus 10 ~P~e~~~~~~~~g~~K-----~~~~~~~~~~~~~~AG~~I~~g~~~~~~v~~~~~~~~~g~~~ll~g~~F~vGL~lVvl 83 (280)
T 3kly_A 10 LPPQMAERAAITGEGK-----AKKAAYKSFLLAISAGIQIGIAFVFYTVVTTGAHDMPYGVTKLLGGLAFSLGLILVVI 83 (280)
T ss_dssp ------------CTHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 4555544555666666 235668999999999999999988655544333222 2255555556677776654
No 4
>3arc_E Cytochrome B559 subunit alpha; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1izl_E* 3kzi_E* 3bz1_E* 1s5l_E* 1w5c_E* 2axt_E* 3bz2_E* 3prq_E* 3prr_E* 3a0b_E* 3a0h_E*
Probab=15.89 E-value=36 Score=24.04 Aligned_cols=48 Identities=23% Similarity=0.427 Sum_probs=33.5
Q ss_pred hhhHHHHHhHhhhhccceeeeeeecCCCCCccccCCCCeeeeEEeecccch
Q psy17874 31 MVTFSLVLVSYFLVTGGIIYDVIIEPPSVGSTTDEHGHSRPVAFMPYRVNG 81 (144)
Q Consensus 31 m~v~aLV~vSYFlitgGiiYdvI~ePP~iG~~~De~G~~rPV~F~~~rvNg 81 (144)
.|+=+|-..-+.+|..|..||+-..|-+-.+.+.++ ++-|+ ..-|-|.
T Consensus 24 ITIPslFiaGwLFVstGLaYdvFGtPrpneYft~~r-q~~pl--v~dRf~~ 71 (83)
T 3arc_E 24 ITIPALFIAGWLFVSTGLAYDVFGTPRPDSYYAQEQ-RSIPL--VTDRFEA 71 (83)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHTCCCTTSSSCTTC-CSCCC--CCCSTTH
T ss_pred eccchHHHhhhhhhccCcceeccCCCCccccccccc-ccCcc--eecccCH
Confidence 455566666777888999999998888766666555 66665 3345444
No 5
>3arc_Z Photosystem II reaction center protein Z; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_Z* 3a0b_Z* 3a0h_Z* 2axt_Z* 3bz1_Z* 3bz2_Z* 3kzi_Z* 3prq_Z* 3prr_Z*
Probab=11.30 E-value=1e+02 Score=20.55 Aligned_cols=16 Identities=31% Similarity=0.667 Sum_probs=13.3
Q ss_pred hhhHHHHHhHhhhhcc
Q psy17874 31 MVTFSLVLVSYFLVTG 46 (144)
Q Consensus 31 m~v~aLV~vSYFlitg 46 (144)
..+++|+..|+-++.|
T Consensus 7 l~v~aLi~~Sf~LVVg 22 (62)
T 3arc_Z 7 LALAALVILSFVMVIG 22 (62)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhe
Confidence 3688999999999876
No 6
>4a4y_A Protein MXIG; protein binding, FHA domain; 1.57A {Shigella flexneri} PDB: 2xxs_A
Probab=10.09 E-value=1.5e+02 Score=22.24 Aligned_cols=50 Identities=28% Similarity=0.484 Sum_probs=33.4
Q ss_pred cceeeeeeecCCCCCccccCCCCeeeeEEeecccchhhhhHHHHHHHHHHhhcceeEEeeCCCCCC
Q psy17874 46 GGIIYDVIIEPPSVGSTTDEHGHSRPVAFMPYRVNGQYIMEGLASSFLFSIGGIGFIILDRTHSPT 111 (144)
Q Consensus 46 gGiiYdvI~ePP~iG~~~De~G~~rPV~F~~~rvNgQyI~EGLassflFtmGglGfIild~~n~~n 111 (144)
-||||-.| .---+.+..||+|+|- .+|.||-- |---|++|=+.+...++.
T Consensus 84 dgiiylti-skdnicqfsdekgeqi-------dinsqfns--------feydgisfhlknmredks 133 (146)
T 4a4y_A 84 DGIIYLTI-SKDNICQFSDEKGEQI-------DINSQFNS--------FEYDGISFHLKNMREDKS 133 (146)
T ss_dssp CEEEEEEE-CTTCCEEEECTTSCEE-------CCCSSSSE--------EEETTEEEEEEECCCCCS
T ss_pred CcEEEEEE-ecCcceecccccCcEe-------eccccccc--------eeecceEeehhccccccc
Confidence 69999888 5556789999999875 45677631 233456666655555443
No 7
>4g6v_A Adhesin/hemolysin; tRNAse, toxin, immunity; 2.64A {Burkholderia pseudomallei 1026A}
Probab=9.17 E-value=1.2e+02 Score=23.90 Aligned_cols=27 Identities=30% Similarity=0.493 Sum_probs=17.8
Q ss_pred ceeeeeeecCCCCCccccCCCCeeeeEEeecccchhhh
Q psy17874 47 GIIYDVIIEPPSVGSTTDEHGHSRPVAFMPYRVNGQYI 84 (144)
Q Consensus 47 GiiYdvI~ePP~iG~~~De~G~~rPV~F~~~rvNgQyI 84 (144)
-.=||+.+-|.+ +...|++ |++|||+.
T Consensus 75 ~~GYdVEqlP~~-~~~knPD----------y~ING~vf 101 (176)
T 4g6v_A 75 NKGYDVVQNPEV-LGPKNPD----------YTINGQVF 101 (176)
T ss_dssp TTTCEEEESCCC-SSSCCCS----------EEETTEEE
T ss_pred hcCcceeeCCcc-CCCCCCC----------ceECCEEE
Confidence 345899988876 5566665 56666653
No 8
>3tds_E Formate/nitrite transporter; membrane protein; HET: PG4 BOG; 1.98A {Clostridium difficile} PDB: 3tdo_A* 3tdr_A* 3te0_A* 3tdx_A* 3te2_A* 3te1_A* 3tdp_A*
Probab=8.08 E-value=1.4e+02 Score=24.16 Aligned_cols=50 Identities=14% Similarity=0.214 Sum_probs=35.9
Q ss_pred hhhhhHHHHHHHHHHhhcceeEEeeC---CCCCCchhhHHHHHHHHHHHHHHH
Q psy17874 81 GQYIMEGLASSFLFSIGGIGFIILDR---THSPTTPKLNRILLICVGFLCVII 130 (144)
Q Consensus 81 gQyI~EGLassflFtmGglGfIild~---~n~~n~~k~nr~~~~~~G~~~vl~ 130 (144)
.+|.+-++.+|....+|++-...... .+++...|+--.+...+|+++|++
T Consensus 28 ~~~~~~~~~AG~~I~~g~~~~~~v~~~~~~~~~g~~~ll~g~~F~~Gl~lVvl 80 (268)
T 3tds_E 28 VKYLVSSAFAGLYVGIGILLIFTIGGLLTDAGSPMTKIVMGLSFAIALSLVIM 80 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999874443211 124556677777777788887776
No 9
>2l25_A Uncharacterized protein; JCSG, structural genomics, PSI-biology, protein structure in joint center for structural genomics; NMR {Bordetella bronchiseptica}
Probab=6.97 E-value=2.5e+02 Score=20.29 Aligned_cols=33 Identities=27% Similarity=0.456 Sum_probs=22.9
Q ss_pred ceeeeeeecCCCCCcc-ccCCCCeeeeEEeecccc
Q psy17874 47 GIIYDVIIEPPSVGST-TDEHGHSRPVAFMPYRVN 80 (144)
Q Consensus 47 GiiYdvI~ePP~iG~~-~De~G~~rPV~F~~~rvN 80 (144)
|=.-+.+.++|+++.- +|+...+.||. ..||.+
T Consensus 104 ~~~~v~v~~~p~v~~~~~~~~~~~~pVs-i~yra~ 137 (141)
T 2l25_A 104 GGLAVRVRTPISNGQPTTGDADHTVPIS-LGYDVQ 137 (141)
T ss_dssp SSSEEECCSCCBCCCCCCCSSEEEEEEE-EEEEEC
T ss_pred CCEEEEEcCCCccCCCcCCCCeEEEEEE-EEEEec
Confidence 3334667799999875 55666999995 456654
No 10
>2hly_A AGR_C_4178P, hypothetical protein ATU2299; ATC2257, MCSG, structural genomics, PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens str} SCOP: d.3.1.19
Probab=6.52 E-value=1.8e+02 Score=23.57 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=19.2
Q ss_pred CCCCCccccCCCCeeeeEEeecccch
Q psy17874 56 PPSVGSTTDEHGHSRPVAFMPYRVNG 81 (144)
Q Consensus 56 PP~iG~~~De~G~~rPV~F~~~rvNg 81 (144)
||++ +++|++|..++|....--++|
T Consensus 181 ~~si-~~~~~~g~~~~i~L~~~~i~G 205 (207)
T 2hly_A 181 AASL-SVTDRDGKARTVPLTGEMLTG 205 (207)
T ss_dssp CSEE-EEECTTSCEEEEECCCCCCCC
T ss_pred CCcE-EeecCCCCeeEeeccCCcccC
Confidence 5666 889999999999876655555
Done!