Query psy17874
Match_columns 144
No_of_seqs 70 out of 72
Neff 3.5
Searched_HMMs 13730
Date Sat Aug 17 01:13:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17874.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17874hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ak2a2 g.41.2.1 (A:147-176) M 43.8 5.5 0.0004 21.8 1.6 24 45-68 2-25 (30)
2 d2o8ra1 a.7.15.1 (A:4-112) Pol 29.2 13 0.00091 24.3 1.9 32 104-137 20-52 (109)
3 d1e4va2 g.41.2.1 (A:122-156) M 27.4 17 0.0012 20.1 1.9 23 46-68 8-30 (35)
4 d2ak3a2 g.41.2.1 (A:125-161) M 24.0 21 0.0015 20.0 1.9 24 45-68 7-30 (37)
5 d1s3ga2 g.41.2.1 (A:126-160) M 22.0 20 0.0015 19.7 1.6 23 46-68 8-30 (35)
6 d1zina2 g.41.2.1 (A:126-160) M 19.8 25 0.0018 19.3 1.7 23 46-68 8-30 (35)
7 d2axtz1 f.17.5.1 (Z:1-62) Phot 19.7 20 0.0014 22.5 1.3 16 31-46 7-22 (62)
8 d1xdpa1 a.7.15.1 (A:2-106) Pol 19.6 21 0.0015 23.3 1.5 32 104-137 21-53 (105)
9 d1akya2 g.41.2.1 (A:131-168) M 15.2 37 0.0027 18.9 1.7 23 46-68 8-30 (38)
10 d2axte1 f.23.38.1 (E:3-84) Cyt 14.9 19 0.0014 23.7 0.4 48 31-81 23-70 (82)
No 1
>d1ak2a2 g.41.2.1 (A:147-176) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Probab=43.75 E-value=5.5 Score=21.81 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.2
Q ss_pred ccceeeeeeecCCCCCccccCCCC
Q psy17874 45 TGGIIYDVIIEPPSVGSTTDEHGH 68 (144)
Q Consensus 45 tgGiiYdvI~ePP~iG~~~De~G~ 68 (144)
.+|-+|.+.-.||.....-|+.|.
T Consensus 2 ~sG~~Yhv~f~PPk~~g~cD~cg~ 25 (30)
T d1ak2a2 2 QSGRSYHEEFNPPKEPMKDDITGE 25 (30)
T ss_dssp TTCCEEBTTTBCCSSTTBCTTTCC
T ss_pred CCCCCccccccCCCCCCccCCCCC
Confidence 378999999999999999998874
No 2
>d2o8ra1 a.7.15.1 (A:4-112) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]}
Probab=29.16 E-value=13 Score=24.26 Aligned_cols=32 Identities=22% Similarity=0.313 Sum_probs=23.9
Q ss_pred eeCCCCCCchhhHHHHHHHHHHHHH-HHHHHHHHH
Q psy17874 104 LDRTHSPTTPKLNRILLICVGFLCV-IISFLACWV 137 (144)
Q Consensus 104 ld~~n~~n~~k~nr~~~~~~G~~~v-l~sf~~a~v 137 (144)
|+.+.|++.|-+-|.- |+|+.+- |==|||-||
T Consensus 20 L~~a~d~~~PllER~~--Fl~I~ssNLDEFFmVRV 52 (109)
T d2o8ra1 20 LMEAADRTLPVYDRIK--FLSIFSSNLEEFYTVRV 52 (109)
T ss_dssp HHHHHCTTSCHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHH--HHHHHHhhHHHHHHHHH
Confidence 6778899999999999 5555543 336888776
No 3
>d1e4va2 g.41.2.1 (A:122-156) Microbial and mitochondrial ADK, insert "zinc finger" domain {Escherichia coli [TaxId: 562]}
Probab=27.44 E-value=17 Score=20.12 Aligned_cols=23 Identities=35% Similarity=0.681 Sum_probs=20.5
Q ss_pred cceeeeeeecCCCCCccccCCCC
Q psy17874 46 GGIIYDVIIEPPSVGSTTDEHGH 68 (144)
Q Consensus 46 gGiiYdvI~ePP~iG~~~De~G~ 68 (144)
.|-+|.+...||..-..=|..|.
T Consensus 8 cG~~Yh~~~~PPk~~g~CD~cg~ 30 (35)
T d1e4va2 8 SGRVYHVKFNPPKVEGKDDVTGE 30 (35)
T ss_dssp TTEEEETTTBCCSSTTBCTTTCC
T ss_pred cCChhhhccCccccCCcccCCCC
Confidence 68999999999999888888775
No 4
>d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Probab=24.02 E-value=21 Score=19.99 Aligned_cols=24 Identities=25% Similarity=0.544 Sum_probs=21.1
Q ss_pred ccceeeeeeecCCCCCccccCCCC
Q psy17874 45 TGGIIYDVIIEPPSVGSTTDEHGH 68 (144)
Q Consensus 45 tgGiiYdvI~ePP~iG~~~De~G~ 68 (144)
..|-+|.+...||-.-..=|..|.
T Consensus 7 ~cG~~Yh~~~~pPk~~g~CD~cg~ 30 (37)
T d2ak3a2 7 GSGRVYNIEFNPPKTMGIDDLTGE 30 (37)
T ss_dssp TTTEEEETTTBCCSSTTBCTTTCC
T ss_pred CcCChhhhccCCccccCCccCCCC
Confidence 369999999999999999998774
No 5
>d1s3ga2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus globisporus [TaxId: 1459]}
Probab=21.95 E-value=20 Score=19.72 Aligned_cols=23 Identities=30% Similarity=0.673 Sum_probs=20.3
Q ss_pred cceeeeeeecCCCCCccccCCCC
Q psy17874 46 GGIIYDVIIEPPSVGSTTDEHGH 68 (144)
Q Consensus 46 gGiiYdvI~ePP~iG~~~De~G~ 68 (144)
.|-+|++...||.....=|..|.
T Consensus 8 CG~~Yh~~~~pPk~~g~CD~cg~ 30 (35)
T d1s3ga2 8 CGTSYHLLFNPPQVEGKCDKDGG 30 (35)
T ss_dssp TCCEEETTTBCCSBTTBCTTTCC
T ss_pred cCchhccccCCCCCCCccCCCCC
Confidence 58899999999999998888774
No 6
>d1zina2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=19.85 E-value=25 Score=19.34 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=20.4
Q ss_pred cceeeeeeecCCCCCccccCCCC
Q psy17874 46 GGIIYDVIIEPPSVGSTTDEHGH 68 (144)
Q Consensus 46 gGiiYdvI~ePP~iG~~~De~G~ 68 (144)
.|-+|.+...||..-..=|..|.
T Consensus 8 CG~~Yh~~~~pPk~~g~CD~cG~ 30 (35)
T d1zina2 8 CGATYHLIFHPPAKPGVCDKCGG 30 (35)
T ss_dssp TCCEEETTTBCCSSTTBCTTTCC
T ss_pred cCchhccccCCCCCCCcCCCCCC
Confidence 58899999999999888888774
No 7
>d2axtz1 f.17.5.1 (Z:1-62) Photosystem II reaction center protein Z, PsbZ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=19.71 E-value=20 Score=22.54 Aligned_cols=16 Identities=31% Similarity=0.667 Sum_probs=13.2
Q ss_pred hhhHHHHHhHhhhhcc
Q psy17874 31 MVTFSLVLVSYFLVTG 46 (144)
Q Consensus 31 m~v~aLV~vSYFlitg 46 (144)
.+++||+..||-++.|
T Consensus 7 l~v~ALi~~SF~lVVg 22 (62)
T d2axtz1 7 LALAALVILSFVMVIG 22 (62)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhee
Confidence 3688999999998876
No 8
>d1xdpa1 a.7.15.1 (A:2-106) Polyphosphate kinase, PPK {Escherichia coli [TaxId: 562]}
Probab=19.57 E-value=21 Score=23.32 Aligned_cols=32 Identities=16% Similarity=0.364 Sum_probs=23.5
Q ss_pred eeCCCCCCchhhHHHHHHHHHHHH-HHHHHHHHHH
Q psy17874 104 LDRTHSPTTPKLNRILLICVGFLC-VIISFLACWV 137 (144)
Q Consensus 104 ld~~n~~n~~k~nr~~~~~~G~~~-vl~sf~~a~v 137 (144)
|+.+.+++.|-+-|.-| +|+++ -+==|||-||
T Consensus 21 L~~a~~~~~PllERlrF--l~I~ssNLDEFFmVRV 53 (105)
T d1xdpa1 21 LQEAADKSNPLIERMRF--LGIYSNNLDEFYKVRF 53 (105)
T ss_dssp HHHHHCTTSCHHHHHHH--HHHHHHHHHHHHHTHH
T ss_pred HHHHcCCCCCHHHHHHH--HHHHHhhHHHHHHhhH
Confidence 67888999999999994 45443 3446777665
No 9
>d1akya2 g.41.2.1 (A:131-168) Microbial and mitochondrial ADK, insert "zinc finger" domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=15.18 E-value=37 Score=18.89 Aligned_cols=23 Identities=30% Similarity=0.536 Sum_probs=19.8
Q ss_pred cceeeeeeecCCCCCccccCCCC
Q psy17874 46 GGIIYDVIIEPPSVGSTTDEHGH 68 (144)
Q Consensus 46 gGiiYdvI~ePP~iG~~~De~G~ 68 (144)
.|-+|.+.-.||..-..=|..|.
T Consensus 8 cG~~Yh~~~~ppk~~g~CD~cg~ 30 (38)
T d1akya2 8 SGRSYHKIFNPPKEDMKDDVTGE 30 (38)
T ss_dssp TCCEEETTTBCCSSTTBCTTTCC
T ss_pred ccchhhhhccCcCcCCccCCCCC
Confidence 68999999999999888887764
No 10
>d2axte1 f.23.38.1 (E:3-84) Cytochrome b559 subunit alpha, PsbE {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=14.94 E-value=19 Score=23.71 Aligned_cols=48 Identities=23% Similarity=0.427 Sum_probs=32.9
Q ss_pred hhhHHHHHhHhhhhccceeeeeeecCCCCCccccCCCCeeeeEEeecccch
Q psy17874 31 MVTFSLVLVSYFLVTGGIIYDVIIEPPSVGSTTDEHGHSRPVAFMPYRVNG 81 (144)
Q Consensus 31 m~v~aLV~vSYFlitgGiiYdvI~ePP~iG~~~De~G~~rPV~F~~~rvNg 81 (144)
.|+=+|...-+.+|..|..||+-..|-+-.+-+.++ .+-|+ ..-|-|.
T Consensus 23 iTIPslFiaGwlFVstGLAYdvFGtPrPneYft~~r-q~~pl--i~~Rf~~ 70 (82)
T d2axte1 23 ITIPALFIAGWLFVSTGLAYDVFGTPRPDSYYAQEQ-RSIPL--VTDRFEA 70 (82)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHTTCCCTTCSSCSSC-CSCCC--CCCSSSH
T ss_pred ecccHHHHhhhhheecccchhhcCCCCccccccccc-ccCcc--cccccCH
Confidence 455566667777888999999998887766665555 55565 2334444
Done!