RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy17874
         (144 letters)



>gnl|CDD|218246 pfam04756, OST3_OST6, OST3 / OST6 family.  The proteins in this
           family are part of a complex of eight ER proteins that
           transfers core oligosaccharide from dolichol carrier to
           Asn-X-Ser/Thr motifs. This family includes both OST3 and
           OST6, each of which contains four predicted
           transmembrane helices. Disruption of OST3 and OST6 leads
           to a defect in the assembly of the complex. Hence, the
           function of these genes seems to be essential for
           recruiting a fully active complex necessary for
           efficient N-glycosylation.
          Length = 138

 Score =  145 bits (369), Expect = 4e-46
 Identities = 64/138 (46%), Positives = 84/138 (60%), Gaps = 4/138 (2%)

Query: 5   IGLPFA--LLQVPNLKLKRPGWFHQPSAMVTFSLVLVSYFLVTGGIIYDVIIEPPSVGST 62
              PF     +VP+LK+ RP     PS MV   +VL+SYFL+  G IY+VI  PP +G  
Sbjct: 1   QIAPFVADRTKVPDLKIPRPPNISIPSIMVCMLIVLISYFLIISGTIYNVIRGPPFIGKD 60

Query: 63  TDEHGHSRPVAFMPYRVNGQYIMEGLASSFLFSIGGIGFIILDR--THSPTTPKLNRILL 120
            DEHG SRPV FM  R  GQ+ +EGL  SFL+++GG+GFI+LD     S    K NRILL
Sbjct: 61  PDEHGKSRPVVFMHGRSQGQFGIEGLIVSFLYTMGGLGFILLDYVNKKSKKKGKQNRILL 120

Query: 121 ICVGFLCVIISFLACWVF 138
             +G   +++SF A  +F
Sbjct: 121 AAIGLTLIVVSFFAIIIF 138


>gnl|CDD|184949 PRK14987, PRK14987, gluconate operon transcriptional regulator;
           Provisional.
          Length = 331

 Score = 28.8 bits (64), Expect = 0.86
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 4/57 (7%)

Query: 59  VGSTTDEHGHSRPVAFMPYRVNGQYIMEGLASSFLFSIGGIGFIILDRTHSPTTPKL 115
           + S TD HG+   +A   Y+   +   E L S   ++I G+  I+ +RTH+P T K+
Sbjct: 85  IESVTDAHGYQTMLAHYGYKPEME--QERLESMLSWNIDGL--ILTERTHTPRTLKM 137


>gnl|CDD|238104 cd00178, STI, Soybean trypsin inhibitor (Kunitz) family of
          protease inhibitors. Inhibit proteases by binding with
          high affinity to their active sites. Trefoil fold,
          common to interleukins and fibroblast growth factors.
          Length = 172

 Score = 27.7 bits (62), Expect = 1.5
 Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 9/58 (15%)

Query: 39 VSYFLV------TGGIIYDVIIE---PPSVGSTTDEHGHSRPVAFMPYRVNGQYIMEG 87
            Y+++       GG+          P +V  +  E     PV F P       I E 
Sbjct: 14 GRYYILPAIRGGGGGLTLAATGNETCPLTVVQSPSELDRGLPVKFSPPNPKSDVIRES 71


>gnl|CDD|182155 PRK09936, PRK09936, hypothetical protein; Provisional.
          Length = 296

 Score = 27.9 bits (62), Expect = 1.7
 Identities = 9/28 (32%), Positives = 11/28 (39%)

Query: 1  METLIGLPFALLQVPNLKLKRPGWFHQP 28
          M   I +   LL V        G F+QP
Sbjct: 1  MRKFIFVLLTLLLVSPFSQAMKGIFYQP 28


>gnl|CDD|216160 pfam00864, P2X_receptor, ATP P2X receptor. 
          Length = 374

 Score = 27.3 bits (61), Expect = 3.4
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 5/34 (14%)

Query: 111 TTPKLNRILLICVGFLC-----VIISFLACWVFM 139
            TPK   I    VG L      VI+S++  WVF+
Sbjct: 4   ETPKSVVIKSKKVGILNRLIQLVILSYVIGWVFI 37


>gnl|CDD|226624 COG4143, TbpA, ABC-type thiamine transport system, periplasmic
           component [Coenzyme metabolism].
          Length = 336

 Score = 26.2 bits (58), Expect = 6.7
 Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 9/51 (17%)

Query: 9   FALLQVPNLKLKRPGWFHQPSAMVTFSLVLVSYFLVTGGIIYD--VIIEPP 57
           FA   V    +  P  +   +  + +      YF      +YD   +  PP
Sbjct: 102 FAPYGVDASDVPVPEGWKIDTFALPYDY---GYF----AFVYDKTKLKNPP 145


>gnl|CDD|215425 PLN02791, PLN02791, Nudix hydrolase homolog.
          Length = 770

 Score = 26.3 bits (58), Expect = 7.5
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 7/24 (29%)

Query: 73  AFMPYRVNGQYIMEGLASSFLFSI 96
           A++PY VNG+Y         LFSI
Sbjct: 165 AYVPYDVNGEY-------GQLFSI 181


>gnl|CDD|205783 pfam13605, DUF4141, Domain of unknown function (DUF4141).  Based on
           Bacteroides thetaiotaomicron gene BT_4772, a putative
           uncharacterized protein. As seen in gene expression
           experiments
           (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE22
           31), it appears to be upregulated in the presence of
           host or vs when in culture.
          Length = 55

 Score = 24.2 bits (53), Expect = 8.3
 Identities = 7/22 (31%), Positives = 10/22 (45%)

Query: 116 NRILLICVGFLCVIISFLACWV 137
            +I L+C+  L       A WV
Sbjct: 2   KKIFLLCMVCLLCTGQAKAQWV 23


>gnl|CDD|225019 COG2108, COG2108, Uncharacterized conserved protein related to
           pyruvate formate-lyase activating enzyme [General
           function prediction only].
          Length = 353

 Score = 25.8 bits (57), Expect = 8.4
 Identities = 11/56 (19%), Positives = 17/56 (30%)

Query: 16  NLKLKRPGWFHQPSAMVTFSLVLVSYFLVTGGIIYDVIIEPPSVGSTTDEHGHSRP 71
             +LKR                 + Y +V GG + + +IE   V           P
Sbjct: 262 RNRLKRMAKNVAKPYEEITEDGTLVYGIVEGGSLAEELIEELEVEWLYVGGKIEIP 317


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.330    0.146    0.464 

Gapped
Lambda     K      H
   0.267   0.0778    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,644,325
Number of extensions: 716459
Number of successful extensions: 1190
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1180
Number of HSP's successfully gapped: 75
Length of query: 144
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 56
Effective length of database: 7,034,450
Effective search space: 393929200
Effective search space used: 393929200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (24.5 bits)