RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy17874
         (144 letters)



>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
          Length = 90

 Score = 26.3 bits (57), Expect = 1.8
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 3/36 (8%)

Query: 108 HSPTTPKLNRI-LLICVGFLCVIISFLACWVFMRMK 142
           HSPTT  +  I +LI +  L  +I  L CW ++R++
Sbjct: 8   HSPTTGVVTVIVILIAIAALGALI--LGCWCYLRLQ 41


>1r8n_A STI, kunitz trypsin inhibitor; kunitz-type trypsin/kallikrein
          inhibitor, beta-trefoil fold, flamboyant, hydrolase
          inhibitor; 1.75A {Delonix regia} SCOP: b.42.4.1
          Length = 185

 Score = 26.2 bits (57), Expect = 3.7
 Identities = 7/41 (17%), Positives = 9/41 (21%)

Query: 56 PPSVGSTTDEHGHSRPVAFMPYRVNGQYIMEGLASSFLFSI 96
          P S+     +     PV F         I         F  
Sbjct: 45 PMSIIQEQSDLQMGLPVRFSSPEEKQGKIYTDTELEIEFVE 85


>2qea_A Putative general stress protein 26; structural genomics, JOI for
          structural genomics, JCSG, protein structure initiative
          oxidoreductase; 2.46A {Jannaschia SP}
          Length = 160

 Score = 25.3 bits (55), Expect = 6.3
 Identities = 3/23 (13%), Positives = 5/23 (21%)

Query: 62 TTDEHGHSRPVAFMPYRVNGQYI 84
               G   P++          I
Sbjct: 22 GIKGQGRLIPMSPQTDDDAPGAI 44


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 25.8 bits (56), Expect = 6.4
 Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 15/76 (19%)

Query: 56  PPSVGSTTDEHGHSRPVAFMPYRVNGQYIMEGLASSFLFSIGGIGFIILDRTHSPTTPKL 115
           PPS+   + E+    P + M   +        L    +       ++    +H P   ++
Sbjct: 320 PPSILEDSLENNEGVP-SPM-LSI------SNLTQEQVQD-----YVNKTNSHLPAGKQV 366

Query: 116 NRILLICVGFLCVIIS 131
             I L+  G   +++S
Sbjct: 367 E-ISLVN-GAKNLVVS 380


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.330    0.146    0.464 

Gapped
Lambda     K      H
   0.267   0.0537    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,257,706
Number of extensions: 127271
Number of successful extensions: 275
Number of sequences better than 10.0: 1
Number of HSP's gapped: 275
Number of HSP's successfully gapped: 9
Length of query: 144
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 59
Effective length of database: 4,328,508
Effective search space: 255381972
Effective search space used: 255381972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.2 bits)