RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17874
         (144 letters)



>d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC
           {Lactococcus lactis [TaxId: 1358]}
          Length = 409

 Score = 26.0 bits (56), Expect = 2.2
 Identities = 7/58 (12%), Positives = 18/58 (31%), Gaps = 10/58 (17%)

Query: 64  DEHGHSRPVAFMPYRVNGQYIMEGLASSFLFSIGGIGFIILDRTHSPTTPKLNRILLI 121
           + +       +      G   +EG++        G   ++    +S       + LL+
Sbjct: 354 NVNSEQILEEYGDESGTG--FLEGIS--------GCILVLSKFEYSINFTYWRQALLL 401


>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB
           {Thermus thermophilus [TaxId: 274]}
          Length = 408

 Score = 24.4 bits (52), Expect = 7.7
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 1   METLIGLPFAL-LQVPNLKLKRPGWFHQPSAMVTFSLVLVSYFLVTGGIIYDVIIEP 56
            +TL+   F L   + N  L+   +  + S +V  S     + L   G + + II P
Sbjct: 352 KKTLVDYGFRLPSALDNRPLRFEEFLERVSQVVFVSATPGPFELAHSGRVVEQIIRP 408


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.146    0.464 

Gapped
Lambda     K      H
   0.267   0.0471    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 557,612
Number of extensions: 24143
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 4
Length of query: 144
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 67
Effective length of database: 1,350,386
Effective search space: 90475862
Effective search space used: 90475862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 49 (23.3 bits)