BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17875
(107 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B5X8M4|BRCC3_SALSA Lys-63-specific deubiquitinase BRCC36 OS=Salmo salar GN=brcc3 PE=2
SV=1
Length = 260
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 69/107 (64%), Gaps = 3/107 (2%)
Query: 1 MSLDVAYISEDVYFSMFYLALSNDKLEVLSMLIGETKEEKGVKSVHVYTMVIPLRLTSKH 60
M++ ++ D + ALS +K EV+ + IGE + VH+++++I R +
Sbjct: 1 MAVSAVHLESDAFLVCMNHALSTEKEEVMGLCIGEVDTNR---IVHIHSVIILRRSDKRK 57
Query: 61 DRVEASPEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITVWPSDV 107
DRVE SPEQL A TEAE+L+++ R +RV+GW+HSHPHITVWPS V
Sbjct: 58 DRVEISPEQLSSAATEAERLAEMTGRPMRVVGWYHSHPHITVWPSHV 104
>sp|Q4VA72|BRCC3_XENTR Lys-63-specific deubiquitinase BRCC36 OS=Xenopus tropicalis
GN=brcc3 PE=2 SV=1
Length = 261
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 70/107 (65%), Gaps = 3/107 (2%)
Query: 1 MSLDVAYISEDVYFSMFYLALSNDKLEVLSMLIGETKEEKGVKSVHVYTMVIPLRLTSKH 60
M++ +I D + +LS ++ EV+ + IGE +K VH+++++I R +
Sbjct: 1 MAVQAVHIQGDAFLVCVTHSLSTEREEVMGLCIGEVDTQK---VVHIHSVIILRRSDKRK 57
Query: 61 DRVEASPEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITVWPSDV 107
DRVE SPEQL A TEA++L+++ R +RV+GW+HSHPHITVWPS V
Sbjct: 58 DRVEISPEQLSAATTEADRLAEITGRPMRVVGWYHSHPHITVWPSHV 104
>sp|Q66GV6|BRCC3_XENLA Lys-63-specific deubiquitinase BRCC36 OS=Xenopus laevis GN=brcc3
PE=2 SV=1
Length = 261
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 68/107 (63%), Gaps = 3/107 (2%)
Query: 1 MSLDVAYISEDVYFSMFYLALSNDKLEVLSMLIGETKEEKGVKSVHVYTMVIPLRLTSKH 60
M++ +I D + +LS ++ EV+ + IGE +K VH+++++I R +
Sbjct: 1 MAVQAVHIQGDAFLVCVTHSLSTEREEVMGLCIGEVDTQK---LVHIHSVIILRRSDKRK 57
Query: 61 DRVEASPEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITVWPSDV 107
DRVE SPEQL A EA++L+ + R +RV+GW+HSHPHITVWPS V
Sbjct: 58 DRVEISPEQLSAATIEADRLADITGRPMRVVGWYHSHPHITVWPSHV 104
>sp|Q5R9L6|BRCC3_PONAB Lys-63-specific deubiquitinase BRCC36 OS=Pongo abelii GN=BRCC3 PE=2
SV=1
Length = 247
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 69/122 (56%), Gaps = 21/122 (17%)
Query: 7 YISEDVYFSMFYLALSNDKLEVLSMLIGETKEE---------------------KGVKSV 45
++ D + ALS +K EV+ + IGE ++ V+ V
Sbjct: 13 HLESDAFLVCLNHALSTEKEEVMGLCIGELNDDTRSDSKFAYTGTEMRTVAEKVDAVRIV 72
Query: 46 HVYTMVIPLRLTSKHDRVEASPEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITVWPS 105
H+++++I R + DRVE SPEQL A TEAE+L++L R +RV+GW+HSHPHITVWPS
Sbjct: 73 HIHSVIILRRSDKRKDRVEISPEQLSAASTEAERLAELTGRPMRVVGWYHSHPHITVWPS 132
Query: 106 DV 107
V
Sbjct: 133 HV 134
>sp|B0KWU8|BRCC3_CALJA Lys-63-specific deubiquitinase BRCC36 OS=Callithrix jacchus
GN=BRCC3 PE=3 SV=2
Length = 316
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 69/122 (56%), Gaps = 21/122 (17%)
Query: 7 YISEDVYFSMFYLALSNDKLEVLSMLIGETKEE---------------------KGVKSV 45
++ D + ALS +K EV+ + IGE ++ V+ V
Sbjct: 13 HLESDAFLVCLNHALSTEKEEVMGLCIGELNDDTRSDSKFAYTGTEMRTVAEKVDAVRIV 72
Query: 46 HVYTMVIPLRLTSKHDRVEASPEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITVWPS 105
H+++++I R + DRVE SPEQL A TEAE+L++L R +RV+GW+HSHPHITVWPS
Sbjct: 73 HIHSVIILRRSDKRKDRVEISPEQLSAASTEAERLAELTGRPMRVVGWYHSHPHITVWPS 132
Query: 106 DV 107
V
Sbjct: 133 HV 134
>sp|P46736|BRCC3_HUMAN Lys-63-specific deubiquitinase BRCC36 OS=Homo sapiens GN=BRCC3 PE=1
SV=2
Length = 316
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 69/122 (56%), Gaps = 21/122 (17%)
Query: 7 YISEDVYFSMFYLALSNDKLEVLSMLIGETKEE---------------------KGVKSV 45
++ D + ALS +K EV+ + IGE ++ V+ V
Sbjct: 13 HLESDAFLVCLNHALSTEKEEVMGLCIGELNDDTRSDSKFAYTGTEMRTVAEKVDAVRIV 72
Query: 46 HVYTMVIPLRLTSKHDRVEASPEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITVWPS 105
H+++++I R + DRVE SPEQL A TEAE+L++L R +RV+GW+HSHPHITVWPS
Sbjct: 73 HIHSVIILRRSDKRKDRVEISPEQLSAASTEAERLAELTGRPMRVVGWYHSHPHITVWPS 132
Query: 106 DV 107
V
Sbjct: 133 HV 134
>sp|B2RYM5|BRCC3_RAT Lys-63-specific deubiquitinase BRCC36 OS=Rattus norvegicus GN=Brcc3
PE=2 SV=1
Length = 291
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 69/122 (56%), Gaps = 21/122 (17%)
Query: 7 YISEDVYFSMFYLALSNDKLEVLSMLIGETKEE---------------------KGVKSV 45
++ D + ALS +K EV+ + IGE ++ ++ V
Sbjct: 13 HLESDAFLVCLNHALSTEKEEVMGLCIGELNDDVRSESKFAHAGSDVCTVPEKVDSIRVV 72
Query: 46 HVYTMVIPLRLTSKHDRVEASPEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITVWPS 105
H+++++I R + DRVE SPEQL A TEAE+L++L R +RV+GW+HSHPHITVWPS
Sbjct: 73 HIHSVIILRRSDKRKDRVEISPEQLSAASTEAERLAELTGRPMRVVGWYHSHPHITVWPS 132
Query: 106 DV 107
V
Sbjct: 133 HV 134
>sp|P46737|BRCC3_MOUSE Lys-63-specific deubiquitinase BRCC36 OS=Mus musculus GN=Brcc3 PE=2
SV=1
Length = 291
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 21/122 (17%)
Query: 7 YISEDVYFSMFYLALSNDKLEVLSMLIGE-------------------TKEEK--GVKSV 45
++ D + ALS +K EV+ + IGE T +EK ++ V
Sbjct: 13 HLESDAFLVCLNHALSTEKEEVMGLCIGELNDDIRSDSKFTYTGTEMRTVQEKMDTIRIV 72
Query: 46 HVYTMVIPLRLTSKHDRVEASPEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITVWPS 105
H+++++I R + DRVE SPEQL A TEAE+L++L R +RV+GW+HSHPHITVWPS
Sbjct: 73 HIHSVIILRRSDKRKDRVEISPEQLSAASTEAERLAELTGRPMRVVGWYHSHPHITVWPS 132
Query: 106 DV 107
V
Sbjct: 133 HV 134
>sp|A5PJP6|BRCC3_BOVIN Lys-63-specific deubiquitinase BRCC36 OS=Bos taurus GN=BRCC3 PE=2
SV=1
Length = 316
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 69/122 (56%), Gaps = 21/122 (17%)
Query: 7 YISEDVYFSMFYLALSNDKLEVLSMLIGETKEE---------------------KGVKSV 45
++ D + ALS +K EV+ + IGE ++ V+ V
Sbjct: 13 HLESDAFLVCLNHALSTEKEEVMGLCIGELNDDLRNDPKFTYTGTEMRTVAEKVDTVRIV 72
Query: 46 HVYTMVIPLRLTSKHDRVEASPEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITVWPS 105
H+++++I R + DRVE SPEQL A TEAE+L++L R +RV+GW+HSHPHITVWPS
Sbjct: 73 HIHSVIILRRSDKRKDRVEISPEQLSAASTEAERLAELTGRPMRVVGWYHSHPHITVWPS 132
Query: 106 DV 107
V
Sbjct: 133 HV 134
>sp|Q7M757|BRC3L_MOUSE Lys-63-specific deubiquitinase BRCC36-like OS=Mus musculus
GN=C6.1al PE=2 SV=1
Length = 291
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 67/127 (52%), Gaps = 21/127 (16%)
Query: 2 SLDVAYISEDVYFSMFYLALSNDKLEVLSMLIGE---------------------TKEEK 40
+ Y+ D + ALS +K EV+ + IG+ K+ +
Sbjct: 8 GVQAVYLESDAFLVCLNHALSTEKEEVMGLCIGQLNDHGRSDSRLAYAGAEMCTVAKKME 67
Query: 41 GVKSVHVYTMVIPLRLTSKHDRVEASPEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHI 100
+ VH+++++I R DRVE SPEQL A EAE+L++ R +RV+GW+HSHPHI
Sbjct: 68 ATRIVHIHSVIILRRSDKTKDRVEISPEQLSAASIEAERLAEQTGRPMRVVGWYHSHPHI 127
Query: 101 TVWPSDV 107
TVWPS V
Sbjct: 128 TVWPSHV 134
>sp|Q6BMQ3|CSN5_DEBHA COP9 signalosome complex subunit 5 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=RRI1 PE=3 SV=2
Length = 469
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 7 YISEDVYFSMFYLALSNDKLEVLSMLIGETKEEKGVKSVHVYTMVIPLRLTSKHDRVEAS 66
YIS M A S +EV+ M+ G K +K+ + V PL + RV A
Sbjct: 64 YISSLALCKMSVHAKSGGAIEVMGMMTG-----KIIKNSIIVMDVYPLPVEGTETRVNAQ 118
Query: 67 PEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITVWPSDV 107
E +E + + + SK R+ ++GW+HSHP W S +
Sbjct: 119 AEG-YEYMVQYLENSKQVGRDENIVGWYHSHPGYGCWLSGI 158
>sp|Q59PG6|CSN5_CANAL COP9 signalosome complex subunit 5 OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=RRI1 PE=3 SV=1
Length = 213
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 9/104 (8%)
Query: 3 LDVAYISEDVYFSMFYLALSNDKLEVLSMLIGETKEEKGVKSVHVYTMVIPLRLTSKHDR 62
+ YIS M A + +E++ ML+G+ G + + T +P+ T R
Sbjct: 72 FNKCYISSLALMKMCTHAQTGGSIEIMGMLVGKIS---GHSIIVMDTYRLPVEGTET--R 126
Query: 63 VEASPEQ---LFEAVTEAEKLSKLYNRELRVIGWFHSHPHITVW 103
V A E + E +TE ++LS N E ++GW+H HP W
Sbjct: 127 VNAQNEAYTYMVEYLTERQQLSNGKNEE-NIVGWYHRHPRYGCW 169
>sp|Q8LAZ7|CSN5B_ARATH COP9 signalosome complex subunit 5b OS=Arabidopsis thaliana
GN=CSN5B PE=1 SV=2
Length = 357
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 7 YISEDVYFSMFYLALSNDKLEVLSMLIGETKEEKGVKSVHVYTMVIPLRLTSKHDRVEAS 66
+IS M A S +E++ ++ G+T+ G + + +P+ T RV A
Sbjct: 60 HISALALLKMVVHARSGGTIEIMGLMQGKTE---GDTIIVMDAFALPVEGTET--RVNAQ 114
Query: 67 PEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITVWPSDV 107
+ +E + E + SKL R V+GW+HSHP W S +
Sbjct: 115 SD-AYEYMVEYSQTSKLAGRLENVVGWYHSHPGYGCWLSGI 154
>sp|Q86IJ1|PSDE_DICDI 26S proteasome non-ATPase regulatory subunit 14 OS=Dictyostelium
discoideum GN=psmD14 PE=3 SV=1
Length = 306
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 7/101 (6%)
Query: 7 YISEDVYFSMFYLALSNDKLEVLSMLIGETKEEKGVKSVHVYTMVIPLRLTSKHDRVEAS 66
+IS M A + LEV+ +++GE +E ++ + V+ M P TS VEA
Sbjct: 32 HISSLALLKMLQHARAGVPLEVMGLMLGELIDEYTIRVIDVFAM--PQSGTSV--SVEAI 87
Query: 67 PEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITVWPSDV 107
+ +F+ T+ + K R+ VIGW+HSHP W S V
Sbjct: 88 -DPVFQ--TKMLDMLKQTGRDEIVIGWYHSHPGFGCWLSSV 125
>sp|Q54PF3|CSN5_DICDI COP9 signalosome complex subunit 5 OS=Dictyostelium discoideum
GN=csn5 PE=1 SV=1
Length = 332
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 45/104 (43%), Gaps = 14/104 (13%)
Query: 8 ISEDVYFSMFYLALSNDKLEVLSMLIGETKEEKGVKSVHVYTMVI----PLRLTSKHDRV 63
IS M A S KLEV+ ML+G+ V TM+I L + RV
Sbjct: 56 ISAIALLKMVMHARSGGKLEVMGMLMGK---------VENNTMIIMDSFALPVEGTETRV 106
Query: 64 EASPEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITVWPSDV 107
A E +E + E +L K R +GW+HSHP W S +
Sbjct: 107 NAQVE-AYEYMVEYLELIKQTGRLENALGWYHSHPGYGCWLSGI 149
>sp|Q6FKS1|RPN11_CANGA 26S proteasome regulatory subunit RPN11 OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=RPN11 PE=3 SV=1
Length = 306
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 7/104 (6%)
Query: 4 DVAYISEDVYFSMFYLALSNDKLEVLSMLIGETKEEKGVKSVHVYTMVIPLRLTSKHDRV 63
+ YIS M + +EV+ +++GE +E V V V+ M P T V
Sbjct: 25 ETVYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVNVVDVFAM--PQSGTGVS--V 80
Query: 64 EASPEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITVWPSDV 107
EA + +F+A + K R+ V+GW+HSHP W S V
Sbjct: 81 EAV-DDVFQA--RMMDMLKQTGRDQMVVGWYHSHPGFGCWLSSV 121
>sp|Q7RXX8|CSN5_NEUCR COP9 signalosome complex subunit 5 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=rri-1 PE=1 SV=1
Length = 336
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
Query: 8 ISEDVYFSMFYLALSNDKLEVLSMLIGETKEEKGVKSVHVYTMVIPLRLTSKHDRVEASP 67
IS M A S LEV+ M+ G + S V T L + RV A
Sbjct: 46 ISSVAMIKMVMHARSGGNLEVMGMMQGYIE-----GSTMVITDAYRLPVEGTETRVNAQD 100
Query: 68 EQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITVWPSDV 107
E E + E +L + NR VIGW+HSHP W S +
Sbjct: 101 E-ANEYMVEYLRLCREENRLENVIGWYHSHPGYGCWLSGI 139
>sp|P43588|RPN11_YEAST 26S proteasome regulatory subunit RPN11 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN11 PE=1 SV=1
Length = 306
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 7/104 (6%)
Query: 4 DVAYISEDVYFSMFYLALSNDKLEVLSMLIGETKEEKGVKSVHVYTMVIPLRLTSKHDRV 63
+ YIS M + +EV+ +++GE ++ V V V+ M P T V
Sbjct: 25 ETVYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVVDVFAM--PQSGTGVS--V 80
Query: 64 EASPEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITVWPSDV 107
EA + +F+A + + K R+ V+GW+HSHP W S V
Sbjct: 81 EA-VDDVFQA--KMMDMLKQTGRDQMVVGWYHSHPGFGCWLSSV 121
>sp|Q9LT08|PSDE_ARATH 26S proteasome non-ATPase regulatory subunit 14 OS=Arabidopsis
thaliana GN=RPN11 PE=2 SV=1
Length = 308
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 7/101 (6%)
Query: 7 YISEDVYFSMFYLALSNDKLEVLSMLIGETKEEKGVKSVHVYTMVIPLRLTSKHDRVEAS 66
YIS M + +EV+ +++GE +E V+ V V+ M P T VEA
Sbjct: 31 YISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAM--PQSGTGV--SVEAV 86
Query: 67 PEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITVWPSDV 107
+ +F+ T + K R V+GW+HSHP W S V
Sbjct: 87 -DHVFQ--TNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGV 124
>sp|Q750E9|RPN11_ASHGO 26S proteasome regulatory subunit RPN11 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=RPN11 PE=3 SV=1
Length = 311
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 7/104 (6%)
Query: 4 DVAYISEDVYFSMFYLALSNDKLEVLSMLIGETKEEKGVKSVHVYTMVIPLRLTSKHDRV 63
+ YIS M + + +EV+ +++G+ +E V V V+ M P T V
Sbjct: 30 ETVYISSLALLKMLKHSRAGVPMEVMGLMLGDFVDEYTVNVVDVFAM--PQSGTGVS--V 85
Query: 64 EASPEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITVWPSDV 107
EA + +F+A + + K R+ V+GW+HSHP W S V
Sbjct: 86 EAV-DDVFQA--KMMDMLKQTGRDQMVVGWYHSHPGFGCWLSSV 126
>sp|Q9FVU9|CSN5A_ARATH COP9 signalosome complex subunit 5a OS=Arabidopsis thaliana
GN=CSN5A PE=1 SV=1
Length = 358
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 8 ISEDVYFSMFYLALSNDKLEVLSMLIGETKEEKGVKSVHVYTMVIPLRLTSKHDRVEASP 67
IS M A S +E++ ++ G+T G + + +P+ T RV A
Sbjct: 61 ISALALLKMVVHARSGGTIEIMGLMQGKTD---GDTIIVMDAFALPVEGTET--RVNAQ- 114
Query: 68 EQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITVWPSDV 107
+ +E + E + +KL R V+GW+HSHP W S +
Sbjct: 115 DDAYEYMVEYSQTNKLAGRLENVVGWYHSHPGYGCWLSGI 154
>sp|Q8SQY3|RPN11_ENCCU 26S proteasome regulatory subunit RPN11 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=RPN11 PE=1 SV=1
Length = 294
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 26 LEVLSMLIGETKEEKGVKSVHVYTMVIPLRLTSKHDRVEASPEQLFEAVTEAEKLSKLYN 85
LEV+ +++GE +E VK V V+ M S + S + +F+ E + K
Sbjct: 41 LEVMGLMLGEFVDEYTVKVVDVFAMP-----QSGTNVTVESVDPIFQ--MEMMSILKATG 93
Query: 86 RELRVIGWFHSHPHITVWPSDV 107
R V+GW+HSHP W S V
Sbjct: 94 RHETVVGWYHSHPGFGCWLSTV 115
>sp|Q9V3H2|PSDE_DROME 26S proteasome non-ATPase regulatory subunit 14 OS=Drosophila
melanogaster GN=Rpn11 PE=1 SV=1
Length = 308
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 11/103 (10%)
Query: 7 YISEDVYFSMFYLALSNDKLEVLSMLIGETKEEKGVKSVHVYTMVIPLRLTSKHDRVEAS 66
YIS M + +EV+ +++GE ++ V+ + V+ M T VEA
Sbjct: 30 YISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVQVIDVFAM----PQTGTGVSVEA- 84
Query: 67 PEQLFEAVTEAEKLS--KLYNRELRVIGWFHSHPHITVWPSDV 107
+ V +A+ L K R V+GW+HSHP W S V
Sbjct: 85 ----VDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGV 123
>sp|Q4IJM4|CSN5_GIBZE COP9 signalosome complex subunit 5 OS=Gibberella zeae (strain PH-1
/ ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=RRI1 PE=3
SV=1
Length = 340
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
Query: 8 ISEDVYFSMFYLALSNDKLEVLSMLIGETKEEKGVKSVHVYTMVIPLRLTSKHDRVEASP 67
IS M A S LEV+ ++ G T+ + + T L + RV A
Sbjct: 54 ISATALIKMTMHARSGGNLEVMGLMQGYTQGD-----TFIVTDAFRLPVEGTETRVNAQD 108
Query: 68 EQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITVWPSDV 107
E E + E L + R+ V+GW+HSHP W S +
Sbjct: 109 EA-NEYIVEYLDLCRAQGRQENVVGWYHSHPGYGCWLSGI 147
>sp|O35593|PSDE_MOUSE 26S proteasome non-ATPase regulatory subunit 14 OS=Mus musculus
GN=Psmd14 PE=1 SV=2
Length = 310
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 11/103 (10%)
Query: 7 YISEDVYFSMFYLALSNDKLEVLSMLIGETKEEKGVKSVHVYTMVIPLRLTSKHDRVEAS 66
YIS M + +EV+ +++GE ++ V+ + V+ M P T VEA
Sbjct: 32 YISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAM--PQSGTGV--SVEA- 86
Query: 67 PEQLFEAVTEAEKLS--KLYNRELRVIGWFHSHPHITVWPSDV 107
+ V +A+ L K R V+GW+HSHP W S V
Sbjct: 87 ----VDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGV 125
>sp|O00487|PSDE_HUMAN 26S proteasome non-ATPase regulatory subunit 14 OS=Homo sapiens
GN=PSMD14 PE=1 SV=1
Length = 310
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 11/103 (10%)
Query: 7 YISEDVYFSMFYLALSNDKLEVLSMLIGETKEEKGVKSVHVYTMVIPLRLTSKHDRVEAS 66
YIS M + +EV+ +++GE ++ V+ + V+ M P T VEA
Sbjct: 32 YISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAM--PQSGTGV--SVEA- 86
Query: 67 PEQLFEAVTEAEKLS--KLYNRELRVIGWFHSHPHITVWPSDV 107
+ V +A+ L K R V+GW+HSHP W S V
Sbjct: 87 ----VDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGV 125
>sp|O76577|PSDE_CAEEL 26S proteasome non-ATPase regulatory subunit 14 OS=Caenorhabditis
elegans GN=rpn-11 PE=1 SV=1
Length = 312
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 11/106 (10%)
Query: 4 DVAYISEDVYFSMFYLALSNDKLEVLSMLIGETKEEKGVKSVHVYTMVIPLRLTSKHDRV 63
+ YIS M + +EV+ +++GE ++ V + V+ M P T V
Sbjct: 31 ETVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVIDVFAM--PQSGTGV--SV 86
Query: 64 EASPEQLFEAVTEAEKLS--KLYNRELRVIGWFHSHPHITVWPSDV 107
EA + V +A+ L K R V+GW+HSHP W S V
Sbjct: 87 EA-----VDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGV 127
>sp|P41883|YPT5_CAEEL Uncharacterized protein F37A4.5 OS=Caenorhabditis elegans
GN=F37A4.5 PE=3 SV=1
Length = 319
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 8 ISEDVYFSMFYLALSNDKLEVLSMLIGETKEEKGVKSVHVYTMVIPLRLTSKHDRVEASP 67
IS M A S LEV+ +++G+ ++ + V+ M P TS VE S
Sbjct: 31 ISSLALLKMLRHARSGIPLEVMGLMLGDFVDDYTINVTDVFAM--PQSGTSV--TVE-SV 85
Query: 68 EQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITVWPSDV 107
+ +++ T+ L KL R V+GW+HSHP W S V
Sbjct: 86 DPVYQ--TKHMDLLKLVGRTENVVGWYHSHPGFGCWLSSV 123
>sp|Q9XZ58|CSN5_DROME COP9 signalosome complex subunit 5 OS=Drosophila melanogaster
GN=CSN5 PE=1 SV=1
Length = 327
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 14/104 (13%)
Query: 8 ISEDVYFSMFYLALSNDKLEVLSMLIGETKEEKGVKSVHVYTMVI----PLRLTSKHDRV 63
IS M A S LEV+ +++G+ ++ TM++ L + RV
Sbjct: 54 ISALALLKMVMHARSGGTLEVMGLMLGKVEDN---------TMIVMDAFALPVEGTETRV 104
Query: 64 EASPEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITVWPSDV 107
A Q +E +T + +K R +GW+HSHP W S +
Sbjct: 105 NAQA-QAYEYMTAYMEAAKEVGRMEHAVGWYHSHPGYGCWLSGI 147
>sp|P41878|RPN11_SCHPO 26S proteasome regulatory subunit rpn11 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpn11 PE=1 SV=2
Length = 308
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Query: 4 DVAYISEDVYFSMFYLALSNDKLEVLSMLIGETKEEKGVKSVHVYTMVIPLRLTSKHDRV 63
+ YIS M +EV+ +++GE ++ V+ V V+ M P T V
Sbjct: 28 ECVYISSLALLKMLRHGRHGTPMEVMGLMLGEFVDDFTVRVVDVFAM--PQSGTGV--SV 83
Query: 64 EASPEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITVWPSDV 107
EA + +F+ + K R V+GW+HSHP W S V
Sbjct: 84 EAV-DPVFQ--KNMMDMLKQTGRPEMVVGWYHSHPGFGCWLSSV 124
>sp|Q6C703|CSN5_YARLI COP9 signalosome complex subunit 5 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=RRI1 PE=3 SV=1
Length = 354
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
Query: 8 ISEDVYFSMFYLALSNDKLEVLSMLIGETKEEKGVKSVHVYTMVIPLRLTSKHDRVEASP 67
+S M A S +EV+ M+ G K + + V PL + RV A
Sbjct: 58 VSSIALVKMAMHARSGGAIEVMGMMTG-----KILPNTFVVMDCYPLPVEGTETRVNAQQ 112
Query: 68 EQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITVWPSDV 107
E + V + L + RE ++GW+HSHP W S +
Sbjct: 113 EGIEFMVEYLQGLKDVGRRE-NIVGWYHSHPGYGCWLSGI 151
>sp|Q6CRJ8|CSN5_KLULA COP9 signalosome complex subunit 5 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=RRI1 PE=3 SV=1
Length = 373
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 16 MFYLALSNDKLEVLSMLIGETKEEKGVKSVHVYTMVIPLRLTSKHDRVEASPEQLFEAVT 75
M A+ +EV+ ML+G T + V Y++ P++ T RV A E +E +
Sbjct: 76 MLSHAVDGGDIEVMGMLVGYTSNDMIVVK-DCYSL--PVQGTET--RVNAHMES-YEYMV 129
Query: 76 EAEKLSKLYNRELRVIGWFHSHPHITVWPSDV 107
+ L +E +++GW+HSHP W S++
Sbjct: 130 QY--LDAFVTKEDKIVGWYHSHPGYGCWLSNI 159
>sp|Q3TV65|MPND_MOUSE MPN domain-containing protein OS=Mus musculus GN=Mpnd PE=2 SV=2
Length = 487
Score = 36.6 bits (83), Expect = 0.045, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 73 AVTEAEKLSKLYNRELRVIGWFHSHPHITVWPS 105
A E E L+ R L ++GW+HSHPH PS
Sbjct: 313 ATVEEEIYQVLFLRGLSLVGWYHSHPHSPAVPS 345
>sp|Q75E19|CSN5_ASHGO COP9 signalosome complex subunit 5 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RRI1
PE=3 SV=1
Length = 420
Score = 35.8 bits (81), Expect = 0.080, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 14/91 (15%)
Query: 20 ALSNDKLEVLSMLIGETKEEKGVKSVHVYTMVIP---LRLTSKHDRVEASPEQLFEAVTE 76
A +EVL ML+G ++E + V Y + + R+ ++ + E + + L AV E
Sbjct: 87 AFDGGDMEVLGMLLGYVQDEM-IVVVDSYRLPVEGTETRVNAQMESYEYTVQYLETAVPE 145
Query: 77 AEKLSKLYNRELRVIGWFHSHPHITVWPSDV 107
L ++GW+HSHP W S +
Sbjct: 146 G----------LAIVGWYHSHPGYGCWLSGI 166
>sp|P91001|CSN5_CAEEL COP9 signalosome complex subunit 5 OS=Caenorhabditis elegans
GN=csn-5 PE=1 SV=1
Length = 368
Score = 35.8 bits (81), Expect = 0.084, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 6/100 (6%)
Query: 8 ISEDVYFSMFYLALSNDKLEVLSMLIGETKEEKGVKSVHVYTMVIPLRLTSKHDRVEASP 67
IS M A LE++ +L G + V L + RV A
Sbjct: 58 ISAIALLKMTMHAKRGGNLEIMGLLQGRIDANS-----FIILDVFALPVEGTETRVNAQA 112
Query: 68 EQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITVWPSDV 107
Q +E +T ++ R+ +V+GW+HSHP W S +
Sbjct: 113 -QAYEYMTVYSEMCDTEGRKEKVVGWYHSHPGYGCWLSGI 151
>sp|O94454|CSN5_SCHPO COP9 signalosome complex subunit 5 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=csn5 PE=1 SV=1
Length = 299
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 26 LEVLSMLIGETKEEKGVKSVHVYTMVIPLRLTSKHDRVEASPEQLFEAVTEAEKLSKLYN 85
LEV+ + G+ + G + + + +P+ T RV A E+ E + L K
Sbjct: 55 LEVMGYVQGKVE---GASLIILDSFALPVEGTET--RVNAH-EEAQEYSVQYHTLCKSVY 108
Query: 86 RELRVIGWFHSHPHITVWPSDV 107
R VIGW+HSHP+ W S V
Sbjct: 109 RHENVIGWYHSHPNYGCWLSGV 130
>sp|Q8N594|MPND_HUMAN MPN domain-containing protein OS=Homo sapiens GN=MPND PE=1 SV=1
Length = 471
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 83 LYNRELRVIGWFHSHPHITVWPS 105
L+ R L ++GW+HSHPH PS
Sbjct: 337 LFLRGLSLVGWYHSHPHSPALPS 359
>sp|Q6PC30|CSN5_DANRE COP9 signalosome complex subunit 5 OS=Danio rerio GN=cops5 PE=2
SV=1
Length = 334
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 20 ALSNDKLEVLSMLIGETKEEKGVKSVHVYTMVIPLRLT-SKHDRVEASPEQLFEAVTEAE 78
A S LEV+ +++G+ G + + + +P+ T ++ + A+ E + + A+
Sbjct: 67 ARSGGNLEVMGLMLGKVD---GETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAK 123
Query: 79 KLSKLYNRELRVIGWFHSHPHITVWPSDV 107
++ +L N IGW+HSHP W S +
Sbjct: 124 QVGRLEN----AIGWYHSHPGYGCWLSGI 148
>sp|Q6P635|CSN5_XENTR COP9 signalosome complex subunit 5 OS=Xenopus tropicalis GN=cops5
PE=2 SV=1
Length = 334
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 20 ALSNDKLEVLSMLIGETKEEKGVKSVHVYTMVIPLRLT-SKHDRVEASPEQLFEAVTEAE 78
A S LEV+ +++G+ G + + + +P+ T ++ + A+ E + + A+
Sbjct: 69 ARSGGNLEVMGLMLGKVD---GETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAK 125
Query: 79 KLSKLYNRELRVIGWFHSHPHITVWPSDV 107
++ +L N IGW+HSHP W S +
Sbjct: 126 QVGRLEN----AIGWYHSHPGYGCWLSGI 150
>sp|Q6GLM9|CSN5_XENLA COP9 signalosome complex subunit 5 OS=Xenopus laevis GN=cops5 PE=2
SV=1
Length = 332
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 20 ALSNDKLEVLSMLIGETKEEKGVKSVHVYTMVIPLRLT-SKHDRVEASPEQLFEAVTEAE 78
A S LEV+ +++G+ G + + + +P+ T ++ + A+ E + + A+
Sbjct: 67 ARSGGNLEVMGLMLGKVD---GETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAK 123
Query: 79 KLSKLYNRELRVIGWFHSHPHITVWPSDV 107
++ +L N IGW+HSHP W S +
Sbjct: 124 QVGRLEN----AIGWYHSHPGYGCWLSGI 148
>sp|Q4P804|CSN5_USTMA COP9 signalosome complex subunit 5 OS=Ustilago maydis (strain 521 /
FGSC 9021) GN=RRI1 PE=3 SV=1
Length = 406
Score = 33.5 bits (75), Expect = 0.40, Method: Composition-based stats.
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 8 ISEDVYFSMFYLALSNDKLEVLSMLIGETKEEKGVKSVHVY-TMVIPLRLTSKHDRVEAS 66
IS M A S E++ ++ G+ E ++++V + +P+ T RV A
Sbjct: 63 ISAVALIKMVMHARSGGIYEIMGLMQGKIDVEN--RTLYVMDSFALPVEGTET--RVNAQ 118
Query: 67 PEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITVWPSDV 107
E +E + + SK R V+GW+HSHP W S +
Sbjct: 119 NEA-YEYMVQYLDHSKEVGRLENVVGWYHSHPGYGCWLSGI 158
>sp|Q08CH3|MPND_DANRE MPN domain-containing protein OS=Danio rerio GN=mpnd PE=2 SV=1
Length = 458
Score = 33.1 bits (74), Expect = 0.50, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 76 EAEKLSKLYNRELRVIGWFHSHPHITVWPS 105
E E L+ R L ++GW+HSHP PS
Sbjct: 287 EEEICQNLFMRGLSLVGWYHSHPRGPALPS 316
>sp|Q5PNU3|AMSH3_ARATH AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana GN=AMSH3
PE=1 SV=2
Length = 507
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 15/91 (16%)
Query: 19 LALSNDK--LEVLSMLIGETKEEKGVKSVHVYTMVIPLRLTSKHDRVEASPEQLFEAVTE 76
LA SN + LE +L G K + H+ T++IP + ++ + E++FE
Sbjct: 346 LARSNTERNLETCGVLAGSLKN----RVFHITTLIIPKQESTSDSCQTLNEEEIFEV--- 398
Query: 77 AEKLSKLYNRELRVIGWFHSHPHITVWPSDV 107
++LS L +GW H+HP T + S V
Sbjct: 399 QDRLS------LFPLGWIHTHPTQTCFMSSV 423
>sp|Q6NKP9|AMSH2_ARATH AMSH-like ubiquitin thioesterase 2 OS=Arabidopsis thaliana GN=AMSH2
PE=2 SV=1
Length = 223
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 11/69 (15%)
Query: 39 EKGVKSVHVYTMVIPLRLTSKHDRVEASPEQLFEAVTEAEKLSKLYNRELRVIGWFHSHP 98
E+G+ +V T++IP + ++ + +A+ E E S REL +GW H+HP
Sbjct: 82 ERGI--FYVTTLIIPKQESTSNS---------CQAMNEVEVFSIQNERELYPVGWIHTHP 130
Query: 99 HITVWPSDV 107
+ S V
Sbjct: 131 SQGCFMSSV 139
>sp|A0JMR6|MYSM1_XENLA Histone H2A deubiquitinase MYSM1 OS=Xenopus laevis GN=mysm1 PE=2
SV=1
Length = 818
Score = 32.3 bits (72), Expect = 0.79, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 27 EVLSMLIGETKEEKGVKSVHVYTMVIPLRLTSKHDRVEASPEQLFEAVTEAEKLSKLYNR 86
EV+ +L G E + V + V P S + E P V++ + L +R
Sbjct: 568 EVIGLLGGRYTESESVVEI---CAVEPCNSLSTGLQCEMDP------VSQTQASEALASR 618
Query: 87 ELRVIGWFHSHPHITVWPS 105
VIGW+HSHP PS
Sbjct: 619 GYSVIGWYHSHPAFDPNPS 637
>sp|Q12468|CSN5_YEAST COP9 signalosome complex subunit 5 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RRI1 PE=1 SV=2
Length = 440
Score = 32.3 bits (72), Expect = 0.87, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 87 ELRVIGWFHSHPHITVWPSDV 107
+L V+GWFHSHP W S++
Sbjct: 156 KLNVVGWFHSHPGYDCWLSNI 176
>sp|A6ZXB7|CSN5_YEAS7 COP9 signalosome complex subunit 5 OS=Saccharomyces cerevisiae
(strain YJM789) GN=RRI1 PE=3 SV=2
Length = 440
Score = 32.3 bits (72), Expect = 0.87, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 87 ELRVIGWFHSHPHITVWPSDV 107
+L V+GWFHSHP W S++
Sbjct: 156 KLNVVGWFHSHPGYDCWLSNI 176
>sp|B3LH96|CSN5_YEAS1 COP9 signalosome complex subunit 5 OS=Saccharomyces cerevisiae
(strain RM11-1a) GN=RRI1 PE=3 SV=2
Length = 440
Score = 32.3 bits (72), Expect = 0.87, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 87 ELRVIGWFHSHPHITVWPSDV 107
+L V+GWFHSHP W S++
Sbjct: 156 KLNVVGWFHSHPGYDCWLSNI 176
>sp|Q8VYB5|AMSH1_ARATH AMSH-like ubiquitin thioesterase 1 OS=Arabidopsis thaliana GN=AMSH1
PE=2 SV=1
Length = 507
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 15/103 (14%)
Query: 7 YISEDVYFSMFYLALSNDK--LEVLSMLIGETKEEKGVKSVHVYTMVIPLRLTSKHDRVE 64
+I+ + + LA SN K LE +L G K K ++ ++IP + S D +
Sbjct: 334 HIATSMMDTFMRLAKSNTKKNLETCGILAGSLKNRK----FYITALIIP-KQESTSDSCQ 388
Query: 65 ASPEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITVWPSDV 107
A+ E+ V + + L L GW H+HP + + S +
Sbjct: 389 ATNEEEIFEVQDKQSLFPL--------GWIHTHPTQSCFMSSI 423
>sp|O35864|CSN5_MOUSE COP9 signalosome complex subunit 5 OS=Mus musculus GN=Cops5 PE=1
SV=3
Length = 334
Score = 32.3 bits (72), Expect = 0.97, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 8/101 (7%)
Query: 8 ISEDVYFSMFYLALSNDKLEVLSMLIGETKEEKGVKSVHVYTMVIPLRLT-SKHDRVEAS 66
IS M A S LEV+ +++G+ G + + + +P+ T ++ + A+
Sbjct: 57 ISALALLKMVMHARSGGNLEVMGLMLGKVD---GETMIIMDSFALPVEGTETRVNAQAAA 113
Query: 67 PEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITVWPSDV 107
E + + A+++ +L N IGW+HSHP W S +
Sbjct: 114 YEYMAAYIENAKQVGRLEN----AIGWYHSHPGYGCWLSGI 150
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,946,566
Number of Sequences: 539616
Number of extensions: 1172616
Number of successful extensions: 3675
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 3601
Number of HSP's gapped (non-prelim): 69
length of query: 107
length of database: 191,569,459
effective HSP length: 75
effective length of query: 32
effective length of database: 151,098,259
effective search space: 4835144288
effective search space used: 4835144288
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)