Query psy17875
Match_columns 107
No_of_seqs 144 out of 1046
Neff 8.6
Searched_HMMs 29240
Date Sat Aug 17 01:14:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17875.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17875hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kks_A Uncharacterized protein 99.9 2E-27 6.9E-32 153.7 9.3 91 6-106 2-92 (146)
2 2kcq_A MOV34/MPN/PAD-1 family; 99.9 1.2E-27 4E-32 155.9 6.4 91 6-106 1-94 (153)
3 4b4t_V 26S proteasome regulato 99.9 4.3E-25 1.5E-29 157.5 10.6 98 2-106 23-120 (306)
4 2znr_A AMSH-like protease; met 99.9 4.7E-23 1.6E-27 137.1 6.7 91 2-106 7-100 (178)
5 2o95_A 26S proteasome non-ATPa 99.8 2.2E-20 7.7E-25 124.8 11.1 92 2-101 6-103 (187)
6 1oi0_A AF2198, hypothetical pr 99.8 2.4E-21 8.3E-26 122.0 4.7 78 5-106 3-81 (124)
7 3rzv_A STAM-binding protein; u 99.8 1.8E-20 6.2E-25 127.3 6.8 91 2-106 40-133 (211)
8 4e0q_A COP9 signalosome comple 99.8 8.4E-18 2.9E-22 108.0 11.6 89 2-99 4-97 (141)
9 4b4t_U RPN8, 26S proteasome re 99.5 4.8E-13 1.6E-17 96.5 13.0 91 2-100 4-99 (338)
10 2og4_A PRE-mRNA-splicing facto 98.4 1.3E-07 4.3E-12 65.4 3.4 90 4-106 38-128 (254)
11 2p8r_A PRP8, PRE-mRNA-splicing 98.4 2.6E-07 9E-12 64.5 3.5 88 4-106 39-127 (273)
12 3sbg_A PRE-mRNA-splicing facto 98.1 9.6E-06 3.3E-10 60.9 6.7 86 5-106 350-439 (565)
13 2qlc_A DNA repair protein RADC 96.8 0.01 3.5E-07 36.9 7.6 80 9-106 7-86 (126)
14 2rh2_A Dihydrofolate reductase 57.1 3.9 0.00013 21.2 0.9 12 86-97 22-33 (62)
15 3gyr_A PHS, phenoxazinone synt 45.1 6.5 0.00022 29.6 0.9 9 91-99 167-175 (612)
16 3abg_A Bilirubin oxidase; clea 40.0 8.7 0.0003 28.9 0.9 10 91-100 130-139 (534)
17 2wsd_A Spore coat protein A; o 39.4 9 0.00031 28.5 0.9 10 91-100 149-158 (513)
18 2kvo_A Photosystem II reaction 39.3 58 0.002 19.7 4.3 59 25-85 46-105 (120)
19 3zx1_A Oxidoreductase, putativ 39.0 8.6 0.00029 28.6 0.7 9 91-99 144-152 (481)
20 1hfu_A Laccase 1; oxidoreducta 37.1 9.6 0.00033 28.3 0.7 9 91-99 105-113 (503)
21 3t6v_A Laccase; beta barrel, o 36.6 10 0.00035 28.2 0.8 9 91-99 106-114 (495)
22 2xu9_A Laccase; oxidoreductase 35.8 10 0.00036 27.5 0.7 9 91-99 108-116 (439)
23 3pxl_A Laccase; 4-copper prote 35.6 10 0.00036 28.3 0.7 9 91-99 105-113 (499)
24 1v10_A Laccase; multicopper bl 35.1 11 0.00037 28.2 0.7 9 91-99 126-134 (521)
25 2g23_A PHS, phenoxazinone synt 34.7 12 0.0004 28.8 0.9 10 91-100 167-176 (612)
26 2fhz_A Colicin-E5 immunity pro 34.4 39 0.0013 20.0 2.9 37 61-104 25-65 (109)
27 1zpu_A Iron transport multicop 33.8 12 0.00043 28.0 0.8 9 91-99 101-109 (534)
28 1sdd_A Coagulation factor V; c 33.5 13 0.00044 25.7 0.8 9 91-99 141-149 (306)
29 3aw5_A Multicopper oxidase; be 32.3 12 0.0004 27.5 0.5 9 91-99 99-107 (448)
30 3od3_A Blue copper oxidase CUE 31.9 13 0.00045 27.7 0.7 10 90-99 108-117 (488)
31 2uxt_A Protein SUFI, SUFI; oxi 31.5 13 0.00044 27.2 0.6 10 90-99 110-119 (451)
32 3sqr_A Laccase; multicopper ox 30.1 15 0.00052 28.0 0.8 9 91-99 164-172 (580)
33 1aoz_A Ascorbate oxidase; oxid 30.1 13 0.00045 27.9 0.5 9 91-99 100-108 (552)
34 3kw8_A Laccase, putative coppe 29.8 16 0.00056 24.7 0.9 11 90-100 110-120 (276)
35 2q9o_A Laccase-1; multicopper 29.1 15 0.0005 27.8 0.6 9 91-99 134-142 (559)
36 3tas_A Small laccase, multi-co 28.8 15 0.00053 25.4 0.6 10 91-100 117-126 (313)
37 2bw4_A Copper-containing nitri 28.5 17 0.0006 25.3 0.8 9 91-99 131-139 (340)
38 3t9w_A Small laccase, multi-co 28.2 18 0.00062 24.9 0.9 11 90-100 132-142 (299)
39 1mzy_A Copper-containing nitri 26.8 19 0.00066 25.0 0.8 10 91-100 124-133 (333)
40 2r7e_A Coagulation factor VIII 26.4 22 0.00074 28.0 1.1 11 90-100 155-165 (742)
41 1sdd_B Coagulation factor V; c 26.2 19 0.00065 27.5 0.8 10 90-99 149-158 (647)
42 3gdc_A Multicopper oxidase; be 25.6 21 0.00072 24.4 0.8 9 91-99 128-136 (288)
43 1oe1_A Dissimilatory copper-co 25.4 20 0.00069 24.9 0.7 9 91-99 125-133 (336)
44 3g5w_A Multicopper oxidase typ 24.4 22 0.00076 24.7 0.8 9 91-99 99-107 (318)
45 1kbv_A ANIA, major outer membr 24.3 22 0.00075 24.7 0.7 9 91-99 130-138 (327)
46 1f3t_A ODC, ornithine decarbox 24.2 76 0.0026 22.8 3.6 34 61-101 168-201 (425)
47 2ln3_A De novo designed protei 22.5 1E+02 0.0034 16.6 3.3 21 66-86 37-57 (83)
48 3uws_A Hypothetical protein; c 22.5 96 0.0033 18.6 3.3 32 8-39 84-115 (126)
49 2zwn_A Two-domain type laccase 22.3 26 0.00089 24.5 0.8 9 91-99 100-108 (339)
50 3btn_A Antizyme inhibitor 1; T 21.5 76 0.0026 23.0 3.2 35 60-101 167-201 (448)
51 3m94_A Translation initiation 21.2 80 0.0027 20.4 2.9 29 11-39 94-126 (189)
52 3r79_A Uncharacterized protein 21.1 1.6E+02 0.0055 19.6 4.5 35 61-101 137-171 (244)
53 2oo0_A ODC, ornithine decarbox 20.6 90 0.0031 22.9 3.4 35 60-101 177-211 (471)
54 1l8b_A Eukaryotic translation 20.5 93 0.0032 20.0 3.1 28 11-38 101-132 (190)
No 1
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}
Probab=99.95 E-value=2e-27 Score=153.74 Aligned_cols=91 Identities=21% Similarity=0.239 Sum_probs=78.5
Q ss_pred EEECHHHHHHHHHhhhcCCCeeEEEEeeeeEeCCceEEEEEeeeeeecccCCCCCceEEeCHHHHHHHHHHHHHHHhhcC
Q psy17875 6 AYISEDVYFSMFYLALSNDKLEVLSMLIGETKEEKGVKSVHVYTMVIPLRLTSKHDRVEASPEQLFEAVTEAEKLSKLYN 85 (107)
Q Consensus 6 v~i~~~~~~~i~~ha~~~~p~E~cGlL~G~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (107)
+.|++.++.+|++||+++.|+|+||+|+|+.+.+... |+++++.++...++++|++||+++.++++++++
T Consensus 2 l~i~~~~l~~i~~ha~~~~p~E~cGlL~G~~~~~~~~----v~~~~p~~n~~~~~~~f~~dp~~~~~~~~~~~~------ 71 (146)
T 2kks_A 2 ITLTKKQMEEMLAHARQALPNEACGLLGGRRDGDDRW----VERVYPLNNLDQSPEHFSMDPREQLTAVKDMRK------ 71 (146)
T ss_dssp EEEEHHHHHHHHHHHHHHTTSCEEEEEEEEEETTEEE----EEEEECCCCCSCCSSSCCCCHHHHHHHHHHHHH------
T ss_pred EEECHHHHHHHHHHHHhcCCcceEEEEEEEEcCCCcE----EEEEEECCCcCCCCceEEECHHHHHHHHHHHHH------
Confidence 7899999999999999999999999999998755322 456666656666667899999999999888876
Q ss_pred CCceEEEEEccCCCCCcccCC
Q psy17875 86 RELRVIGWFHSHPHITVWPSD 106 (107)
Q Consensus 86 ~~~~ivG~yHSHP~~~~~pS~ 106 (107)
+|+.+||||||||+++++||.
T Consensus 72 ~g~~ivG~~HSHP~~~~~PS~ 92 (146)
T 2kks_A 72 NGWVMLGNFHSHPATPARPSA 92 (146)
T ss_dssp HTCEEEEEEEEESSSCSSCCH
T ss_pred CCCEEEEEEeCCCcCCCCCCH
Confidence 789999999999999999995
No 2
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}
Probab=99.94 E-value=1.2e-27 Score=155.89 Aligned_cols=91 Identities=20% Similarity=0.254 Sum_probs=76.5
Q ss_pred EEECHHHHHHHHHhhhcCCCeeEEEEeeeeEe-CCceEEEEEeeeeeecccC--CCCCceEEeCHHHHHHHHHHHHHHHh
Q psy17875 6 AYISEDVYFSMFYLALSNDKLEVLSMLIGETK-EEKGVKSVHVYTMVIPLRL--TSKHDRVEASPEQLFEAVTEAEKLSK 82 (107)
Q Consensus 6 v~i~~~~~~~i~~ha~~~~p~E~cGlL~G~~~-~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (107)
++|++.++.+|+.||+++.|+|+||+|+|+.+ ++. .. |..+++..+. ..+.++|++||+++.++++++++
T Consensus 1 l~i~~~~l~~i~~ha~~~~p~E~cGlL~G~~~~~~~-~~---v~~~~p~~n~~~~~~~~~f~~dp~~~~~~~~~~~~--- 73 (153)
T 2kcq_A 1 MKTTPDILDQIRVHGADAYPEEGCGFLLGTVTDDGD-NR---VAALHRATNRRSEQRTRRYELTADDYRAADAAAQE--- 73 (153)
T ss_dssp CBCCHHHHHHHHHHHHHHTTSCCCEEEEEEECTTSC-EE---EEEEEESSCCCCCCCSCCSSCCCCSHHHHHHHHHH---
T ss_pred CEeCHHHHHHHHHHHHhcCCcceEEEEEEeeccCCC-eE---EEEEEECCCCCCCCCCcEEEECHHHHHHHHHHHHH---
Confidence 46899999999999999999999999999985 332 22 4555555554 56678999999999999888876
Q ss_pred hcCCCceEEEEEccCCCCCcccCC
Q psy17875 83 LYNRELRVIGWFHSHPHITVWPSD 106 (107)
Q Consensus 83 ~~~~~~~ivG~yHSHP~~~~~pS~ 106 (107)
+++.+||||||||+++|+||.
T Consensus 74 ---~g~~ivG~yHSHP~~~~~PS~ 94 (153)
T 2kcq_A 74 ---QGLDVVGVYHSHPDHPARPSA 94 (153)
T ss_dssp ---HTCEEEEEEEECSSSSSSCCH
T ss_pred ---CCCeEEEEEeCCCCCCCCCCH
Confidence 789999999999999999995
No 3
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.92 E-value=4.3e-25 Score=157.52 Aligned_cols=98 Identities=24% Similarity=0.427 Sum_probs=80.6
Q ss_pred ceeEEEECHHHHHHHHHhhhcCCCeeEEEEeeeeEeCCceEEEEEeeeeeecccCCCCCceEEeCHHHHHHHHHHHHHHH
Q psy17875 2 SLDVAYISEDVYFSMFYLALSNDKLEVLSMLIGETKEEKGVKSVHVYTMVIPLRLTSKHDRVEASPEQLFEAVTEAEKLS 81 (107)
Q Consensus 2 ~~~~v~i~~~~~~~i~~ha~~~~p~E~cGlL~G~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (107)
+.++|+|++.|+.+|++||+++.|.|+||+|+|...++..+. |+++|+.++ .++.++++....++. .+|.+++
T Consensus 23 ~~~~V~is~lallkm~~Ha~~~~~~eV~GlLlG~~~~~~~v~---Vt~~f~~P~-~~~~~~v~~~d~~y~---~~m~~~~ 95 (306)
T 4b4t_V 23 TKETVYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVN---VVDVFAMPQ-SGTGVSVEAVDDVFQ---AKMMDML 95 (306)
T ss_dssp SCCEEEECHHHHHHHHHHTCSCSSSCCEEEEEEEEETTTEEE---EEEEECCCC-EESSSCEECCCHHHH---HHHHHHH
T ss_pred CCCEEEEeHHHHHHHHHHhcCCCCceEEEEEeeEEcCCeEEE---EEEEEeCCc-CCCCCchhcCCHHHH---HHHHHHH
Confidence 357899999999999999999999999999999876665443 789887654 345677775443443 3678889
Q ss_pred hhcCCCceEEEEEccCCCCCcccCC
Q psy17875 82 KLYNRELRVIGWFHSHPHITVWPSD 106 (107)
Q Consensus 82 ~~~~~~~~ivG~yHSHP~~~~~pS~ 106 (107)
++.++++.+||||||||++++|||.
T Consensus 96 ~~v~~~~~vVGWYhShP~~~~~~S~ 120 (306)
T 4b4t_V 96 KQTGRDQMVVGWYHSHPGFGCWLSS 120 (306)
T ss_dssp HHHSCCCCCSEEEEECCSSSCCCCH
T ss_pred HHhCCCcceeeEEecCCCCCCcCCH
Confidence 9999999999999999999999995
No 4
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A
Probab=99.88 E-value=4.7e-23 Score=137.13 Aligned_cols=91 Identities=25% Similarity=0.489 Sum_probs=70.0
Q ss_pred ceeEEEECHHHHHHHHHhhhcCCC--eeEEEEeeeeEeCCceEEEEEeeeeeecccCCCCCceEEe-CHHHHHHHHHHHH
Q psy17875 2 SLDVAYISEDVYFSMFYLALSNDK--LEVLSMLIGETKEEKGVKSVHVYTMVIPLRLTSKHDRVEA-SPEQLFEAVTEAE 78 (107)
Q Consensus 2 ~~~~v~i~~~~~~~i~~ha~~~~p--~E~cGlL~G~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 78 (107)
++++|.|+++++.+|+.||....| .|+||+|+|....+... |+.++++++. ++.+++++ ++++..++ ++
T Consensus 7 ~~~~v~i~~~~l~k~l~hA~~~~~~~~EvcGlL~G~~~~~~~~----V~~v~~~pq~-~t~~~~~~~~~~e~~~~---~~ 78 (178)
T 2znr_A 7 GLRCVVLPEDLCHKFLQLAESNTVRGIETCGILCGKLTHNEFT----ITHVIVPKQS-AGPDYCDMENVEELFNV---QD 78 (178)
T ss_dssp SCCCEEEETTHHHHHHHHHHHHHTTTCCCEEEEEEEEETTEEE----EEEEEECCEE-EETTEEEECCHHHHHHH---HH
T ss_pred CcEEEEECHHHHHHHHHHHHhCCCCCceEEEEEeeEecCCCeE----EEEEEeCCcC-CCCCeeccCCHHHHHHH---HH
Confidence 467899999999999999998755 69999999998755332 5677666554 44566665 45554443 33
Q ss_pred HHHhhcCCCceEEEEEccCCCCCcccCC
Q psy17875 79 KLSKLYNRELRVIGWFHSHPHITVWPSD 106 (107)
Q Consensus 79 ~~~~~~~~~~~ivG~yHSHP~~~~~pS~ 106 (107)
+ +++++||||||||+.+++||.
T Consensus 79 ~------~~l~~vGwyHSHP~~~~~pS~ 100 (178)
T 2znr_A 79 Q------HDLLTLGWIHTHPTQTAFLSS 100 (178)
T ss_dssp H------HTCEEEEEEEECSSSCSCCCH
T ss_pred h------CCCEEEEEEeCCCCCCCCCCH
Confidence 3 789999999999999999995
No 5
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Probab=99.84 E-value=2.2e-20 Score=124.83 Aligned_cols=92 Identities=15% Similarity=0.209 Sum_probs=72.7
Q ss_pred ceeEEEECHHHHHHHHHhhhcC----CCeeEEEEeeeeEeCCceEEEEEeeeeeecccCCCC--CceEEeCHHHHHHHHH
Q psy17875 2 SLDVAYISEDVYFSMFYLALSN----DKLEVLSMLIGETKEEKGVKSVHVYTMVIPLRLTSK--HDRVEASPEQLFEAVT 75 (107)
Q Consensus 2 ~~~~v~i~~~~~~~i~~ha~~~----~p~E~cGlL~G~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 75 (107)
+..+|.|++.++.+|++|+.+. .|.||||+|+|...++ .+ . |+++|+.++.... ...+.+|++ |..
T Consensus 6 ~~~~V~i~plvllkI~~H~~r~~~~~~~~~V~G~LLG~~~~~-~v-~--V~~~f~lp~~~~~~~~~~~~~d~e-y~~--- 77 (187)
T 2o95_A 6 AVQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKK-VL-D--VSNSFAVPFDEDDKDDSVWFLDHD-YLE--- 77 (187)
T ss_dssp SCSEEEECHHHHHHHHHHHHHHHHTTCCSCCEEEEEEEESSS-EE-E--EEEEEEECEEECSSCTTSEEECHH-HHH---
T ss_pred CCCEEEEchHHHHHHHHHHhhhcccCCCcEEEEEEEEEEcCC-EE-E--EEEEEEeCCcccCCCcchhhcCHH-HHH---
Confidence 4679999999999999999774 8999999999998644 33 3 7888876654322 236789884 544
Q ss_pred HHHHHHhhcCCCceEEEEEccCCCCC
Q psy17875 76 EAEKLSKLYNRELRVIGWFHSHPHIT 101 (107)
Q Consensus 76 ~~~~~~~~~~~~~~ivG~yHSHP~~~ 101 (107)
.+.+++++.++++.+||||||||+..
T Consensus 78 ~m~~~~~~v~~~~~iVGWY~s~~~~s 103 (187)
T 2o95_A 78 NMYGMFKKVNARERIVGWYHTGPKLH 103 (187)
T ss_dssp HHHHHHHTTSSSCEEEEEEECCSSCC
T ss_pred HHHHHHHHhCCCCCEEEEEcCCCcCC
Confidence 56778899999999999999999864
No 6
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A
Probab=99.83 E-value=2.4e-21 Score=122.05 Aligned_cols=78 Identities=19% Similarity=0.256 Sum_probs=54.6
Q ss_pred EEEECHHHHHHHHHhhhcCCCeeEEEEeeeeEeCCceEEEEEeeeeeecccCCCC-CceEEeCHHHHHHHHHHHHHHHhh
Q psy17875 5 VAYISEDVYFSMFYLALSNDKLEVLSMLIGETKEEKGVKSVHVYTMVIPLRLTSK-HDRVEASPEQLFEAVTEAEKLSKL 83 (107)
Q Consensus 5 ~v~i~~~~~~~i~~ha~~~~p~E~cGlL~G~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 83 (107)
++.|++.++.+|++||++++|+|+||+|+|+.+ . |+++++.++...+ ...|.+ ++..
T Consensus 3 ~v~i~~~~l~~i~~ha~~~~P~E~cGlL~g~~~---~-----v~~~~~~p~~~~~~~~~f~~----------~~~~---- 60 (124)
T 1oi0_A 3 SMKISRGLLKTILEAAKSAHPDEFIALLSGSKD---V-----MDELIFLPFVSGSVSAVIHL----------DMLP---- 60 (124)
T ss_dssp SCEECHHHHHHHHHHHHHHTTSCCEEEEEESTT---E-----ECEEEECCCCC---------------------------
T ss_pred EEEEcHHHHHHHHHHHHhcCCCeeEEEEecccC---E-----EEEEEECCCCCCCcCceeee----------eecc----
Confidence 578999999999999999999999999999763 2 2344433322211 112321 1222
Q ss_pred cCCCceEEEEEccCCCCCcccCC
Q psy17875 84 YNRELRVIGWFHSHPHITVWPSD 106 (107)
Q Consensus 84 ~~~~~~ivG~yHSHP~~~~~pS~ 106 (107)
+++++||||||||+++++||.
T Consensus 61 --~~~~ivG~~HSHP~~~~~PS~ 81 (124)
T 1oi0_A 61 --IGMKVFGTVHSHPSPSCRPSE 81 (124)
T ss_dssp --CCCEEEEEEEEESSSCCSCCH
T ss_pred --CCCEEEEEEEECcCCCCccCH
Confidence 679999999999999999995
No 7
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A
Probab=99.82 E-value=1.8e-20 Score=127.28 Aligned_cols=91 Identities=22% Similarity=0.384 Sum_probs=67.9
Q ss_pred ceeEEEECHHHHHHHHHhhhcCC--CeeEEEEeeeeEeCCceEEEEEeeeeeecccCCCCCceEEeC-HHHHHHHHHHHH
Q psy17875 2 SLDVAYISEDVYFSMFYLALSND--KLEVLSMLIGETKEEKGVKSVHVYTMVIPLRLTSKHDRVEAS-PEQLFEAVTEAE 78 (107)
Q Consensus 2 ~~~~v~i~~~~~~~i~~ha~~~~--p~E~cGlL~G~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 78 (107)
++++|.|+++++.+|+.||.... +.|+||+|+|+..++... |+.++.+++. ++++++++. ++++.+++ +
T Consensus 40 ~lr~v~Ipk~ll~kfL~~A~~~tp~~~EvcGlL~Gk~~~~~~~----I~~v~~ppq~-gt~~~v~~~~~~e~~~~~---~ 111 (211)
T 3rzv_A 40 GLRHVVVPGRLCPQFLQLASANTARGVATCGILCGKLMRNEFT----ITHVLIPKQS-AGSDYCNTENEEELFLIQ---D 111 (211)
T ss_dssp TBCCEEEETTHHHHHHHHHHHHHHTTCCCEEEEEEEEETTEEE----EEEEEECCEE-ECSSCEEECCHHHHHHHH---H
T ss_pred ccEEEEECHHHHHHHHHHHHhCCCCCceEEEEEEeEcCCCCEE----EEEEEeCCcc-CCCCceeccChHHHHHHH---h
Confidence 45789999999999999999874 589999999998755322 5666655443 345565554 44444432 2
Q ss_pred HHHhhcCCCceEEEEEccCCCCCcccCC
Q psy17875 79 KLSKLYNRELRVIGWFHSHPHITVWPSD 106 (107)
Q Consensus 79 ~~~~~~~~~~~ivG~yHSHP~~~~~pS~ 106 (107)
. +++++||||||||+.+++||.
T Consensus 112 ~------~~l~~vGWyHSHP~~~~~pS~ 133 (211)
T 3rzv_A 112 Q------QGLITLGWIHTHPTQTAFLSS 133 (211)
T ss_dssp H------HTCEEEEEEEECTTSCSCCCH
T ss_pred h------CCCEEEEEEeCCCCCCCCCCH
Confidence 2 689999999999999999995
No 8
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=99.77 E-value=8.4e-18 Score=108.04 Aligned_cols=89 Identities=15% Similarity=0.166 Sum_probs=69.5
Q ss_pred ceeEEEECHHHHHHHHHhhhcC-----CCeeEEEEeeeeEeCCceEEEEEeeeeeecccCCCCCceEEeCHHHHHHHHHH
Q psy17875 2 SLDVAYISEDVYFSMFYLALSN-----DKLEVLSMLIGETKEEKGVKSVHVYTMVIPLRLTSKHDRVEASPEQLFEAVTE 76 (107)
Q Consensus 2 ~~~~v~i~~~~~~~i~~ha~~~-----~p~E~cGlL~G~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (107)
+..+|.|++.++.+|++|+.+. .+.+++|+|+|...++ .+ . |+++|+.+. ++..+++.+|. +|. ..
T Consensus 4 ~~~~V~ihplvll~I~dH~~R~~~~~g~~~~V~G~LLG~~~~~-~v-e--V~nsF~~p~-~~~~~~~~~d~-~y~---~~ 74 (141)
T 4e0q_A 4 MSVTISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQKGR-NI-E--IMNSFELKT-DVIGDETVINK-DYY---NK 74 (141)
T ss_dssp -CEEEEECHHHHHHHHHHHHCC------CCEEEEEEEEEEETT-EE-E--EEEEEECCE-EEETTEEEECH-HHH---HH
T ss_pred CcEEEEEecHHHHHHHHHHhhhcccCCCCcEEEEEEEEEEeCC-EE-E--EEEEEEecc-cCCCCceeecH-HHH---HH
Confidence 3468999999999999999763 5789999999998643 33 3 789987654 33455778876 444 46
Q ss_pred HHHHHhhcCCCceEEEEEccCCC
Q psy17875 77 AEKLSKLYNRELRVIGWFHSHPH 99 (107)
Q Consensus 77 ~~~~~~~~~~~~~ivG~yHSHP~ 99 (107)
|.+++|+.+.++.+||||||||.
T Consensus 75 m~~~~k~v~~~e~iVGWY~s~~~ 97 (141)
T 4e0q_A 75 KEQQYKQVFSDLDFIGWYTTGDN 97 (141)
T ss_dssp HHHHHHHHSTTCEEEEEEEEEC-
T ss_pred HHHHHHHhCCCccEEEEEeCCCC
Confidence 78899999999999999999986
No 9
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.50 E-value=4.8e-13 Score=96.48 Aligned_cols=91 Identities=15% Similarity=0.229 Sum_probs=68.1
Q ss_pred ceeEEEECHHHHHHHHHhhhc---CCCeeEEEEeeeeEeCCceEEEEEeeeeeecccCC--CCCceEEeCHHHHHHHHHH
Q psy17875 2 SLDVAYISEDVYFSMFYLALS---NDKLEVLSMLIGETKEEKGVKSVHVYTMVIPLRLT--SKHDRVEASPEQLFEAVTE 76 (107)
Q Consensus 2 ~~~~v~i~~~~~~~i~~ha~~---~~p~E~cGlL~G~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 76 (107)
+.++|.|.|.++.+|++|..+ ..+.+++|.|+|..++ .. +. |+++|+.+..+ ...+-..+|. +|. +.
T Consensus 4 ~~~~V~vhPlVll~I~dH~~R~~~~~~~rViG~LLG~~~~-~~-ve--V~nsF~~p~~e~~~~~~~~~~D~-~y~---~~ 75 (338)
T 4b4t_U 4 QHEKVTIAPLVLLSALDHYERTQTKENKRCVGVILGDANS-ST-IR--VTNSFALPFEEDEKNSDVWFLDH-NYI---EN 75 (338)
T ss_dssp CCSEEEECHHHHHHHHHHHHHHTTTCCSCCEEEEEEEECS-SE-EE--EEEEEECCEEECSSSTTCEEECH-HHH---HH
T ss_pred CCCEEEEecHHHHHHHHHHHHhhcCCCCeEEEEEEeEEcC-CE-EE--EEEEEEeccccCCCCCccccccH-HHH---HH
Confidence 447999999999999999754 4567899999998754 33 33 78998654322 1223455665 444 46
Q ss_pred HHHHHhhcCCCceEEEEEccCCCC
Q psy17875 77 AEKLSKLYNRELRVIGWFHSHPHI 100 (107)
Q Consensus 77 ~~~~~~~~~~~~~ivG~yHSHP~~ 100 (107)
|.+++|+.+.++.+||||||+|..
T Consensus 76 m~~~~kkV~~~e~iVGWY~tg~~~ 99 (338)
T 4b4t_U 76 MNEMCKKINAKEKLIGWYHSGPKL 99 (338)
T ss_dssp HHHHHHHHCCSCEEEEEEECCSSC
T ss_pred HHHHHhhcCccCCEEEEEecCCCC
Confidence 788999999999999999999864
No 10
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae}
Probab=98.43 E-value=1.3e-07 Score=65.45 Aligned_cols=90 Identities=14% Similarity=0.274 Sum_probs=60.1
Q ss_pred eEEEECHHHHHHHHHhhhcCCCeeEEEEeeeeEeCC-ceEEEEEeeeeeecccCCCCCceEEeCHHHHHHHHHHHHHHHh
Q psy17875 4 DVAYISEDVYFSMFYLALSNDKLEVLSMLIGETKEE-KGVKSVHVYTMVIPLRLTSKHDRVEASPEQLFEAVTEAEKLSK 82 (107)
Q Consensus 4 ~~v~i~~~~~~~i~~ha~~~~p~E~cGlL~G~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (107)
.++.|+++++.+.+..|... .++||+|.|....+ ..+.. |+-++.+++ .++.+.+++..+. ... +..+
T Consensus 38 ~t~vlPknLlkkFi~IAD~~--Tq~cG~LyG~~~~d~~~v~e--I~~ivippQ-~gt~~s~~~~~~~-p~~--~~~~--- 106 (254)
T 2og4_A 38 NVYVLPKNLLKKFIEISDVK--IQVAAFIYGMSAKDHPKVKE--IKTVVLVPQ-LGHVGSVQISNIP-DIG--DLPD--- 106 (254)
T ss_dssp CEEEEEHHHHHHHHHTSCSS--SCCEEEEEEEECSSCTTEEE--EEEEECCCE-EEETTEEEECCCC-CCT--TSTT---
T ss_pred cEEEcCHHHHHHHHHHhhcc--ceEEEEEEccCCCCCCCeEE--EEEEEECCc-cCCCceEECCCcC-ccc--cchh---
Confidence 47899999999999887653 58999999998533 22333 443333333 3456778775311 000 1111
Q ss_pred hcCCCceEEEEEccCCCCCcccCC
Q psy17875 83 LYNRELRVIGWFHSHPHITVWPSD 106 (107)
Q Consensus 83 ~~~~~~~ivG~yHSHP~~~~~pS~ 106 (107)
-.+++.+||.|+||+..++.|.
T Consensus 107 --l~dLe~LGWIHTqptq~~fLSs 128 (254)
T 2og4_A 107 --TEGLELLGWIHTQTEELKFMAA 128 (254)
T ss_dssp --CTTCEEEEEEEEESSCCSSCCH
T ss_pred --hcCCEecceEeeCCCCCcccCH
Confidence 1679999999999999999885
No 11
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A
Probab=98.35 E-value=2.6e-07 Score=64.46 Aligned_cols=88 Identities=16% Similarity=0.327 Sum_probs=59.5
Q ss_pred eEEEECHHHHHHHHHhhhcCCCeeEEEEeeeeEeCC-ceEEEEEeeeeeecccCCCCCceEEeCHHHHHHHHHHHHHHHh
Q psy17875 4 DVAYISEDVYFSMFYLALSNDKLEVLSMLIGETKEE-KGVKSVHVYTMVIPLRLTSKHDRVEASPEQLFEAVTEAEKLSK 82 (107)
Q Consensus 4 ~~v~i~~~~~~~i~~ha~~~~p~E~cGlL~G~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (107)
.++.|+++++.+.+.-|.. ..++||+|.|....+ ..+.. |.-++.+++ .++.+.+++..+. -.. +++
T Consensus 39 ~t~vlPknllkkFi~IADl--rTq~~G~LyG~s~~d~~~vke--I~~ivipPQ-~gt~~sv~~~~~~-p~~-----~~l- 106 (273)
T 2p8r_A 39 YTYILPKNILKKFITISDL--RTQIAGFMYGVSPPDNPQVKE--IRCIVLVPQ-TGSHQQVNLPTQL-PDH-----ELL- 106 (273)
T ss_dssp CEEEEEHHHHHHHHHTSCS--SSCCEEEEEEECCTTCTTEEE--EEEEECCSB-EECSSCEECCSSC-CCC-----TTT-
T ss_pred cEEEecHHHHHHHHHHhhc--cceEEEEEeccCCCCCCCeEE--EEEEEECCc-cCCCceEECCCcC-cch-----hhh-
Confidence 4788999999999987664 358999999998533 23333 343333333 3566778875311 000 111
Q ss_pred hcCCCceEEEEEccCCCCCcccCC
Q psy17875 83 LYNRELRVIGWFHSHPHITVWPSD 106 (107)
Q Consensus 83 ~~~~~~~ivG~yHSHP~~~~~pS~ 106 (107)
.+++.+||.|+||+..++.|.
T Consensus 107 ---~dLe~LGWIHTqp~e~~~LSs 127 (273)
T 2p8r_A 107 ---RDFEPLGWMHTQPNELPQLSP 127 (273)
T ss_dssp ---TTSEEEEEEEEESSCCSSCCH
T ss_pred ---ccccccceEeeCCCCCCCcCH
Confidence 579999999999999999885
No 12
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae}
Probab=98.06 E-value=9.6e-06 Score=60.89 Aligned_cols=86 Identities=17% Similarity=0.348 Sum_probs=58.9
Q ss_pred EEEECHHHHHHHHHhhhcCCCeeEEEEeeeeEeCCc-eEEEEEeeeeeecccCCCCCceEEeC--HHH-HHHHHHHHHHH
Q psy17875 5 VAYISEDVYFSMFYLALSNDKLEVLSMLIGETKEEK-GVKSVHVYTMVIPLRLTSKHDRVEAS--PEQ-LFEAVTEAEKL 80 (107)
Q Consensus 5 ~v~i~~~~~~~i~~ha~~~~p~E~cGlL~G~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~ 80 (107)
++.|+++++.+.+.-|-. ..++||+|.|..-.+. .+.. |.-+..+++ .++.+.+++. |+. ....
T Consensus 350 tyVlPkNLLkKFI~IADl--rTQicGyLyG~sp~dn~nVkE--I~cIVipPQ-~Gt~~sv~lp~lp~he~~~~------- 417 (565)
T 3sbg_A 350 VYVLPKNLLKKFIEISDV--KIQVAAFIYGMSAKDHPKVKE--IKTVVLVPQ-LGHVGSVQISNIPDIGDLPD------- 417 (565)
T ss_dssp EEEEEHHHHHHHHHHSCS--SSCCEEEEEEEEETTEEEEEE--EEEEECCCE-EECSSCEEECCCCCCTTSTT-------
T ss_pred EEEccHHHHHHHHHHhhc--cceeEEEEecCCCCCCCCeEE--EEEEEECCc-cCCCceEECCCCCccccccc-------
Confidence 688999999999876553 4589999999987552 3443 444333333 3566778775 311 0000
Q ss_pred HhhcCCCceEEEEEccCCCCCcccCC
Q psy17875 81 SKLYNRELRVIGWFHSHPHITVWPSD 106 (107)
Q Consensus 81 ~~~~~~~~~ivG~yHSHP~~~~~pS~ 106 (107)
-.+++.+||.|+||...++.|+
T Consensus 418 ----l~dLe~LGWIHTqp~et~fLSs 439 (565)
T 3sbg_A 418 ----TEGLELLGWIHTQTEELKFMAA 439 (565)
T ss_dssp ----CTTCEEEEEEEEESSCCSSCCH
T ss_pred ----cccCEecceeeecCCcccccCH
Confidence 1579999999999999999885
No 13
>2qlc_A DNA repair protein RADC homolog; MCSG, structural genomics, PSI-2, structure initiative; HET: DNA; 2.30A {Chlorobium tepidum tls}
Probab=96.75 E-value=0.01 Score=36.86 Aligned_cols=80 Identities=19% Similarity=0.230 Sum_probs=49.9
Q ss_pred CHHHHHHHHHhhhcCCCeeEEEEeeeeEeCCceEEEEEeeeeeecccCCCCCceEEeCHHHHHHHHHHHHHHHhhcCCCc
Q psy17875 9 SEDVYFSMFYLALSNDKLEVLSMLIGETKEEKGVKSVHVYTMVIPLRLTSKHDRVEASPEQLFEAVTEAEKLSKLYNREL 88 (107)
Q Consensus 9 ~~~~~~~i~~ha~~~~p~E~cGlL~G~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (107)
++..+.+.+....+..+.|...+|. .+...++.. ...+ ..++-+....+|.++++ .|.+ .+.
T Consensus 7 s~~~v~~~l~~~l~~~~~E~f~vl~--Ld~~n~li~--~~~l-----~~Gt~~~~~v~pRei~~---~Al~------~~A 68 (126)
T 2qlc_A 7 GARDVFEYMKGRIPDETKEHLFVLF--LSTKNQILR--HETI-----TIGTLTASLIHPREIFK---AAIR------ESA 68 (126)
T ss_dssp SHHHHHHHHTTCCSCTTSCEEEEEE--ECTTCBEEE--EEEE-----EESSCCGGGCCHHHHHH---HHHH------TTC
T ss_pred CHHHHHHHHHHHhCcCCCeEEEEEE--EcCCCCEEE--EEEe-----cCCCCCcEeecHHHHHH---HHHH------cCC
Confidence 4555556666556677888866664 222223432 1222 12445566678887654 4444 567
Q ss_pred eEEEEEccCCCCCcccCC
Q psy17875 89 RVIGWFHSHPHITVWPSD 106 (107)
Q Consensus 89 ~ivG~yHSHP~~~~~pS~ 106 (107)
.-|...|.||.+.+.||.
T Consensus 69 ~~vIl~HNHPSG~~~PS~ 86 (126)
T 2qlc_A 69 HSIILVHNHPSGDVQPSN 86 (126)
T ss_dssp SEEEEEEECSSSCCSCCH
T ss_pred cEEEEEecCCCCCCCCCH
Confidence 788899999999999994
No 14
>2rh2_A Dihydrofolate reductase type 2; folate metabolism, plasmid-encoded R67 DHFR, TMP-resistant DHFR, antibiotic resistance, methotrexate resistance; 0.96A {Escherichia coli} SCOP: b.34.4.1 PDB: 1vif_A* 1vie_A 2gqv_A 2rk1_A* 2rk2_A* 3sfm_A 2p4t_A*
Probab=57.11 E-value=3.9 Score=21.19 Aligned_cols=12 Identities=17% Similarity=0.853 Sum_probs=8.9
Q ss_pred CCceEEEEEccC
Q psy17875 86 RELRVIGWFHSH 97 (107)
Q Consensus 86 ~~~~ivG~yHSH 97 (107)
.+.+|||||-+.
T Consensus 22 wqg~ivgwyct~ 33 (62)
T 2rh2_A 22 WQGQIVGWYCTN 33 (62)
T ss_dssp CEEEEEEEECCS
T ss_pred ccceEeEEEEcc
Confidence 347899999643
No 15
>3gyr_A PHS, phenoxazinone synthase; metalloprotein, laccase, multicopper oxidase, hexamer, oxidoreductase, antibiotic biosynthesis; 2.30A {Streptomyces antibioticus}
Probab=45.09 E-value=6.5 Score=29.60 Aligned_cols=9 Identities=33% Similarity=0.921 Sum_probs=7.0
Q ss_pred EEEEccCCC
Q psy17875 91 IGWFHSHPH 99 (107)
Q Consensus 91 vG~yHSHP~ 99 (107)
.=|||||..
T Consensus 167 T~WYHsH~~ 175 (612)
T 3gyr_A 167 QWWYHDHAM 175 (612)
T ss_dssp EEEEEECCT
T ss_pred eEEEeeCCC
Confidence 349999974
No 16
>3abg_A Bilirubin oxidase; cleavage on PAIR of basic residues, glyco metal-binding, oxidoreductase; HET: NAG BMA NDG; 2.30A {Myrothecium verrucaria} PDB: 2xll_A*
Probab=39.96 E-value=8.7 Score=28.91 Aligned_cols=10 Identities=30% Similarity=0.786 Sum_probs=8.2
Q ss_pred EEEEccCCCC
Q psy17875 91 IGWFHSHPHI 100 (107)
Q Consensus 91 vG~yHSHP~~ 100 (107)
.-|||||...
T Consensus 130 T~WYH~H~~~ 139 (534)
T 3abg_A 130 TLWYHDHAMH 139 (534)
T ss_dssp EEEEEECCTT
T ss_pred eEEEecCccc
Confidence 6799999864
No 17
>2wsd_A Spore coat protein A; oxidoreductase, multi-copper oxidase, sporulation, COTA- LAC copper centre; 1.60A {Bacillus subtilis} PDB: 1gsk_A 1hkp_A 1hkz_A 1hl0_A 1hl1_A 1of0_A* 1ogr_A 1uvw_A* 1w6l_A 1w6w_A 1w8e_A 2bhf_A 2x87_A 2x88_A* 4a67_A 4akq_A 4a68_A* 4akp_A* 4a66_A 4ako_A
Probab=39.37 E-value=9 Score=28.55 Aligned_cols=10 Identities=40% Similarity=0.986 Sum_probs=8.0
Q ss_pred EEEEccCCCC
Q psy17875 91 IGWFHSHPHI 100 (107)
Q Consensus 91 vG~yHSHP~~ 100 (107)
.=|||||...
T Consensus 149 T~wYH~H~~~ 158 (513)
T 2wsd_A 149 ILWYHDHAMA 158 (513)
T ss_dssp EEEEEECCTT
T ss_pred ceEECCCCCC
Confidence 5799999853
No 18
>2kvo_A Photosystem II reaction center PSB28 protein; membrane, photosynthesis, thylakoid, structural genom 2, protein structure initiative; NMR {Synechocystis SP}
Probab=39.33 E-value=58 Score=19.74 Aligned_cols=59 Identities=15% Similarity=0.057 Sum_probs=32.1
Q ss_pred CeeEEEEeeeeEeCCceEEEEEeeeeeecccCCCCCceEEe-CHHHHHHHHHHHHHHHhhcC
Q psy17875 25 KLEVLSMLIGETKEEKGVKSVHVYTMVIPLRLTSKHDRVEA-SPEQLFEAVTEAEKLSKLYN 85 (107)
Q Consensus 25 p~E~cGlL~G~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 85 (107)
..++.|+.+ .++++.+...++..-|.+-....-+..|.| ++++|.+-++-|++|.+.-|
T Consensus 46 ~~~itgm~L--iDeEGei~t~~v~aKFvnGkp~~iEa~y~m~s~~~WdRFMRFMeRYA~~Ng 105 (120)
T 2kvo_A 46 TDDITGMYL--IDDEGEIITREVKGKFINGRPTAIEATVILNSQPEWDRFMRFMERYGAENG 105 (120)
T ss_dssp GGGCCCEEE--ECSSCEEEECCEEEEEETTEEEEEEEEEEECSSHHHHHHHHHHHHHHHHCC
T ss_pred cCcceeEEE--EccCccEEEEecceEEECCceeEEEEEEEECCHHHHHHHHHHHHHHHHhcC
Confidence 356777766 333333332112222322111112235666 57899999999999887744
No 19
>3zx1_A Oxidoreductase, putative; laccase, metallo-oxidase, cuprous oxidase; 1.95A {Campylobacter jejuni subsp}
Probab=39.04 E-value=8.6 Score=28.63 Aligned_cols=9 Identities=56% Similarity=1.505 Sum_probs=7.5
Q ss_pred EEEEccCCC
Q psy17875 91 IGWFHSHPH 99 (107)
Q Consensus 91 vG~yHSHP~ 99 (107)
.-|||||..
T Consensus 144 T~WYH~H~~ 152 (481)
T 3zx1_A 144 TYWYHPHPH 152 (481)
T ss_dssp EEEEECCCT
T ss_pred eEEEeecCC
Confidence 679999974
No 20
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A {Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1a65_A*
Probab=37.08 E-value=9.6 Score=28.33 Aligned_cols=9 Identities=44% Similarity=0.833 Sum_probs=7.6
Q ss_pred EEEEccCCC
Q psy17875 91 IGWFHSHPH 99 (107)
Q Consensus 91 vG~yHSHP~ 99 (107)
.=|||||..
T Consensus 105 T~wYH~H~~ 113 (503)
T 1hfu_A 105 TFWYHSHFG 113 (503)
T ss_dssp EEEEEECST
T ss_pred cEEEEecch
Confidence 579999985
No 21
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Probab=36.62 E-value=10 Score=28.24 Aligned_cols=9 Identities=44% Similarity=0.973 Sum_probs=7.5
Q ss_pred EEEEccCCC
Q psy17875 91 IGWFHSHPH 99 (107)
Q Consensus 91 vG~yHSHP~ 99 (107)
.-|||||..
T Consensus 106 T~wYHsH~~ 114 (495)
T 3t6v_A 106 TYWYHSHLT 114 (495)
T ss_dssp EEEEEECST
T ss_pred eeeeeccch
Confidence 569999985
No 22
>2xu9_A Laccase; oxidoreductase, multicopper oxidases; 1.50A {Thermus thermophilus} PDB: 2xuw_A 2xvb_A 2yae_A 2yaf_A 2yah_A 2yam_A 2yao_A 2yap_A 2yaq_A 2yar_A 4ai7_A
Probab=35.76 E-value=10 Score=27.54 Aligned_cols=9 Identities=44% Similarity=1.095 Sum_probs=7.5
Q ss_pred EEEEccCCC
Q psy17875 91 IGWFHSHPH 99 (107)
Q Consensus 91 vG~yHSHP~ 99 (107)
.=|||||..
T Consensus 108 T~wYH~H~~ 116 (439)
T 2xu9_A 108 TFWYHPHLH 116 (439)
T ss_dssp EEEEECCCT
T ss_pred ceEeccCCC
Confidence 579999975
No 23
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2 Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB: 3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A* 2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A* 4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*
Probab=35.62 E-value=10 Score=28.28 Aligned_cols=9 Identities=44% Similarity=0.933 Sum_probs=7.5
Q ss_pred EEEEccCCC
Q psy17875 91 IGWFHSHPH 99 (107)
Q Consensus 91 vG~yHSHP~ 99 (107)
.-|||||..
T Consensus 105 T~wYHsH~~ 113 (499)
T 3pxl_A 105 TFWYHSHLS 113 (499)
T ss_dssp EEEEEECST
T ss_pred eeeeeccch
Confidence 569999985
No 24
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3
Probab=35.05 E-value=11 Score=28.21 Aligned_cols=9 Identities=44% Similarity=0.977 Sum_probs=7.6
Q ss_pred EEEEccCCC
Q psy17875 91 IGWFHSHPH 99 (107)
Q Consensus 91 vG~yHSHP~ 99 (107)
.-|||||..
T Consensus 126 T~wYH~H~~ 134 (521)
T 1v10_A 126 TYWYHSHLS 134 (521)
T ss_dssp EEEEEECST
T ss_pred cEEEEeccC
Confidence 579999985
No 25
>2g23_A PHS, phenoxazinone synthase; copper, metalloprotein, laccase, multicopper oxidase, hexamer; 2.30A {Streptomyces antibioticus} PDB: 3gyr_A
Probab=34.70 E-value=12 Score=28.84 Aligned_cols=10 Identities=30% Similarity=0.736 Sum_probs=8.2
Q ss_pred EEEEccCCCC
Q psy17875 91 IGWFHSHPHI 100 (107)
Q Consensus 91 vG~yHSHP~~ 100 (107)
.-|||||...
T Consensus 167 T~wYH~H~~~ 176 (612)
T 2g23_A 167 QWWYHDHAMN 176 (612)
T ss_dssp EEEEEECCTT
T ss_pred eEEEecccCC
Confidence 5799999864
No 26
>2fhz_A Colicin-E5 immunity protein; protein-protein complex, inhibition of ribonuclease, immune system, hydrolase; 1.15A {Escherichia coli} SCOP: d.311.1.1 PDB: 2dfx_I
Probab=34.37 E-value=39 Score=19.99 Aligned_cols=37 Identities=24% Similarity=0.443 Sum_probs=24.3
Q ss_pred ceEEeCHHHHHHHHHHHHHHHhhcCCCceEE----EEEccCCCCCccc
Q psy17875 61 DRVEASPEQLFEAVTEAEKLSKLYNRELRVI----GWFHSHPHITVWP 104 (107)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv----G~yHSHP~~~~~p 104 (107)
....++|..-+++.+++-+ +++-|- |+||. |++.|..
T Consensus 25 ~~MkLs~kAAieVC~eAtk------r~l~I~rIEGGiW~~-pGFear~ 65 (109)
T 2fhz_A 25 ASMKLSPKAAIEVCNEAAK------KGLWILGIDGGHWLN-PGFRIDS 65 (109)
T ss_dssp TTCCBCHHHHHHHHHHHHH------HTCCEEEEEEEEECS-SCEEECG
T ss_pred eEEEECcHHHHHHHHHHHh------cCceEEEEecceecC-CCccccc
Confidence 3455778777777666655 666554 78886 8776653
No 27
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Probab=33.77 E-value=12 Score=28.02 Aligned_cols=9 Identities=44% Similarity=1.088 Sum_probs=7.4
Q ss_pred EEEEccCCC
Q psy17875 91 IGWFHSHPH 99 (107)
Q Consensus 91 vG~yHSHP~ 99 (107)
.=|||||..
T Consensus 101 T~wYH~H~~ 109 (534)
T 1zpu_A 101 TYWYHSHTD 109 (534)
T ss_dssp EEEEECCSS
T ss_pred eEEEEEcCc
Confidence 469999975
No 28
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3
Probab=33.46 E-value=13 Score=25.68 Aligned_cols=9 Identities=11% Similarity=-0.053 Sum_probs=7.2
Q ss_pred EEEEccCCC
Q psy17875 91 IGWFHSHPH 99 (107)
Q Consensus 91 vG~yHSHP~ 99 (107)
.=|||||.+
T Consensus 141 T~wYHsH~~ 149 (306)
T 1sdd_A 141 THIYYSYVN 149 (306)
T ss_dssp EEEEECCSS
T ss_pred EEEEeccCC
Confidence 569999965
No 29
>3aw5_A Multicopper oxidase; beta barrel, oxidoreductase; 2.00A {Pyrobaculum aerophilum}
Probab=32.31 E-value=12 Score=27.50 Aligned_cols=9 Identities=44% Similarity=0.955 Sum_probs=7.1
Q ss_pred EEEEccCCC
Q psy17875 91 IGWFHSHPH 99 (107)
Q Consensus 91 vG~yHSHP~ 99 (107)
.-|||||+.
T Consensus 99 T~wYH~H~~ 107 (448)
T 3aw5_A 99 TYLYHPHPH 107 (448)
T ss_dssp EEEEEECCT
T ss_pred ceEeccCCC
Confidence 579999953
No 30
>3od3_A Blue copper oxidase CUEO; multicopper oxidase, Cu(I) oxidase, oxidoreductase; 1.10A {Escherichia coli} PDB: 1n68_A 2fqd_A* 2fqe_A* 2fqf_A* 2fqg_A* 3nsd_A 1kv7_A 3pau_A 3pav_A 3nsf_A 1pf3_A 3qqx_A 3nsc_A 3nt0_A 3uad_A 3uaa_A 3uac_A 3uab_A 3uae_A 3nsy_A ...
Probab=31.94 E-value=13 Score=27.73 Aligned_cols=10 Identities=50% Similarity=1.228 Sum_probs=8.0
Q ss_pred EEEEEccCCC
Q psy17875 90 VIGWFHSHPH 99 (107)
Q Consensus 90 ivG~yHSHP~ 99 (107)
=.-|||||..
T Consensus 108 GT~wYH~H~~ 117 (488)
T 3od3_A 108 ATCWFHPHQH 117 (488)
T ss_dssp EEEEEECCCT
T ss_pred eeEEEEecCC
Confidence 4679999974
No 31
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like, FTS mutant suppressor; 1.90A {Escherichia coli} PDB: 2uxv_A
Probab=31.48 E-value=13 Score=27.22 Aligned_cols=10 Identities=20% Similarity=0.723 Sum_probs=7.8
Q ss_pred EEEEEccCCC
Q psy17875 90 VIGWFHSHPH 99 (107)
Q Consensus 90 ivG~yHSHP~ 99 (107)
=.=|||||..
T Consensus 110 GT~wYH~H~~ 119 (451)
T 2uxt_A 110 ATLWYHANTP 119 (451)
T ss_dssp EEEEEEECCT
T ss_pred cceEEecCCC
Confidence 3579999974
No 32
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET: NAG BMA MAN; 1.67A {Botrytis aclada}
Probab=30.12 E-value=15 Score=28.02 Aligned_cols=9 Identities=44% Similarity=1.029 Sum_probs=7.3
Q ss_pred EEEEccCCC
Q psy17875 91 IGWFHSHPH 99 (107)
Q Consensus 91 vG~yHSHP~ 99 (107)
.-|||||..
T Consensus 164 T~WYHsH~~ 172 (580)
T 3sqr_A 164 TTWYHSHFS 172 (580)
T ss_dssp EEEEEECST
T ss_pred ceEEeeccc
Confidence 469999974
No 33
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A*
Probab=30.10 E-value=13 Score=27.88 Aligned_cols=9 Identities=22% Similarity=0.431 Sum_probs=7.4
Q ss_pred EEEEccCCC
Q psy17875 91 IGWFHSHPH 99 (107)
Q Consensus 91 vG~yHSHP~ 99 (107)
.=|||||..
T Consensus 100 T~wYHsH~~ 108 (552)
T 1aoz_A 100 TFFYHGHLG 108 (552)
T ss_dssp EEEEEECST
T ss_pred EEEEEECch
Confidence 579999974
No 34
>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*
Probab=29.79 E-value=16 Score=24.74 Aligned_cols=11 Identities=18% Similarity=0.018 Sum_probs=8.2
Q ss_pred EEEEEccCCCC
Q psy17875 90 VIGWFHSHPHI 100 (107)
Q Consensus 90 ivG~yHSHP~~ 100 (107)
-.=|||||...
T Consensus 110 gt~~YH~h~~~ 120 (276)
T 3kw8_A 110 GYWHYHDHVVG 120 (276)
T ss_dssp EEEEEECSSSS
T ss_pred EEEEEecCccc
Confidence 45679999864
No 35
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A* 2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*
Probab=29.06 E-value=15 Score=27.76 Aligned_cols=9 Identities=44% Similarity=1.084 Sum_probs=7.5
Q ss_pred EEEEccCCC
Q psy17875 91 IGWFHSHPH 99 (107)
Q Consensus 91 vG~yHSHP~ 99 (107)
.-|||||..
T Consensus 134 T~wYH~H~~ 142 (559)
T 2q9o_A 134 TSWYHSHFS 142 (559)
T ss_dssp EEEEEECST
T ss_pred EEEEEEccc
Confidence 589999974
No 36
>3tas_A Small laccase, multi-copper oxidase; two-domain laccase, oxidoreductase, secreted; HET: PG4; 2.30A {Streptomyces viridosporus} PDB: 3tbb_A 3tbc_A*
Probab=28.76 E-value=15 Score=25.41 Aligned_cols=10 Identities=20% Similarity=0.129 Sum_probs=7.2
Q ss_pred EEEEccCCCC
Q psy17875 91 IGWFHSHPHI 100 (107)
Q Consensus 91 vG~yHSHP~~ 100 (107)
.=|||||...
T Consensus 117 t~~YH~h~~~ 126 (313)
T 3tas_A 117 YWHYHDHVVG 126 (313)
T ss_dssp EEEEECSSSS
T ss_pred EEEEeecCcc
Confidence 3489999753
No 37
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=28.49 E-value=17 Score=25.26 Aligned_cols=9 Identities=22% Similarity=0.508 Sum_probs=7.3
Q ss_pred EEEEccCCC
Q psy17875 91 IGWFHSHPH 99 (107)
Q Consensus 91 vG~yHSHP~ 99 (107)
.-|||+|..
T Consensus 131 t~wyH~h~~ 139 (340)
T 2bw4_A 131 VFVYHCAPE 139 (340)
T ss_dssp EEEEECCCT
T ss_pred EEEEEcCCC
Confidence 469999975
No 38
>3t9w_A Small laccase, multi-copper oxidase; two-domain copper oxidase, Cu-binding, oxidoreducta; 1.50A {Amycolatopsis SP}
Probab=28.21 E-value=18 Score=24.92 Aligned_cols=11 Identities=18% Similarity=0.102 Sum_probs=7.9
Q ss_pred EEEEEccCCCC
Q psy17875 90 VIGWFHSHPHI 100 (107)
Q Consensus 90 ivG~yHSHP~~ 100 (107)
-.=|||||...
T Consensus 132 gt~~YH~H~~~ 142 (299)
T 3t9w_A 132 GYWHYHDHAMG 142 (299)
T ss_dssp EEEEEECSSSS
T ss_pred eeEEEecCCcc
Confidence 34589999754
No 39
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=26.83 E-value=19 Score=24.99 Aligned_cols=10 Identities=20% Similarity=0.119 Sum_probs=7.8
Q ss_pred EEEEccCCCC
Q psy17875 91 IGWFHSHPHI 100 (107)
Q Consensus 91 vG~yHSHP~~ 100 (107)
.-|||+|+..
T Consensus 124 t~~yH~h~~~ 133 (333)
T 1mzy_A 124 AFVYHCAPGG 133 (333)
T ss_dssp EEEEECCCST
T ss_pred EEEEeecCCc
Confidence 4699999863
No 40
>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_A*
Probab=26.40 E-value=22 Score=27.99 Aligned_cols=11 Identities=18% Similarity=0.205 Sum_probs=8.5
Q ss_pred EEEEEccCCCC
Q psy17875 90 VIGWFHSHPHI 100 (107)
Q Consensus 90 ivG~yHSHP~~ 100 (107)
-.-|||||...
T Consensus 155 GT~wYHsH~~~ 165 (742)
T 2r7e_A 155 LTYSYLSHVDL 165 (742)
T ss_dssp CCEEECCCSCS
T ss_pred EEEEEccCCCh
Confidence 35799999864
No 41
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=26.24 E-value=19 Score=27.53 Aligned_cols=10 Identities=10% Similarity=-0.220 Sum_probs=8.2
Q ss_pred EEEEEccCCC
Q psy17875 90 VIGWFHSHPH 99 (107)
Q Consensus 90 ivG~yHSHP~ 99 (107)
..=|||||.+
T Consensus 149 ~T~wYHsH~~ 158 (647)
T 1sdd_B 149 RAWAYYSAVN 158 (647)
T ss_dssp EEEEEECCSS
T ss_pred eEEEEccCCC
Confidence 4679999985
No 42
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=25.57 E-value=21 Score=24.36 Aligned_cols=9 Identities=22% Similarity=0.523 Sum_probs=7.4
Q ss_pred EEEEccCCC
Q psy17875 91 IGWFHSHPH 99 (107)
Q Consensus 91 vG~yHSHP~ 99 (107)
.=|||+|..
T Consensus 128 t~~yH~H~~ 136 (288)
T 3gdc_A 128 THLYHCHQS 136 (288)
T ss_dssp EEEEECCCS
T ss_pred cEEEEecCc
Confidence 469999986
No 43
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=25.38 E-value=20 Score=24.87 Aligned_cols=9 Identities=22% Similarity=0.371 Sum_probs=7.3
Q ss_pred EEEEccCCC
Q psy17875 91 IGWFHSHPH 99 (107)
Q Consensus 91 vG~yHSHP~ 99 (107)
.=|||+|..
T Consensus 125 t~~yH~h~~ 133 (336)
T 1oe1_A 125 TFVYHCAPE 133 (336)
T ss_dssp EEEEECCCT
T ss_pred EEEEecCCC
Confidence 569999975
No 44
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=24.41 E-value=22 Score=24.70 Aligned_cols=9 Identities=33% Similarity=0.988 Sum_probs=7.3
Q ss_pred EEEEccCCC
Q psy17875 91 IGWFHSHPH 99 (107)
Q Consensus 91 vG~yHSHP~ 99 (107)
.=|||||..
T Consensus 99 t~wYH~H~~ 107 (318)
T 3g5w_A 99 TMWYHCHVN 107 (318)
T ss_dssp EEEEECCSS
T ss_pred EEEEEccCC
Confidence 569999975
No 45
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=24.28 E-value=22 Score=24.75 Aligned_cols=9 Identities=11% Similarity=0.180 Sum_probs=7.0
Q ss_pred EEEEccCCC
Q psy17875 91 IGWFHSHPH 99 (107)
Q Consensus 91 vG~yHSHP~ 99 (107)
.=|||+|+.
T Consensus 130 t~wyH~h~~ 138 (327)
T 1kbv_A 130 LYIYHCAVA 138 (327)
T ss_dssp EEEEECCCS
T ss_pred EEEEEeCCC
Confidence 368999975
No 46
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A*
Probab=24.21 E-value=76 Score=22.78 Aligned_cols=34 Identities=18% Similarity=0.048 Sum_probs=21.4
Q ss_pred ceEEeCHHHHHHHHHHHHHHHhhcCCCceEEEEEccCCCCC
Q psy17875 61 DRVEASPEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHIT 101 (107)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~yHSHP~~~ 101 (107)
.+|=++++++.+..+.+. + .+++++|+ |+|....
T Consensus 168 ~RfG~~~~~~~~~~~~~~----~--~~l~~~Gl-~~H~gs~ 201 (425)
T 1f3t_A 168 VKFGAKVEDCRFILEQAK----K--LNIDVTGV-SFHVGSG 201 (425)
T ss_dssp CCSCBCHHHHHHHHHHHH----H--TTCEEEEE-ECCCCSC
T ss_pred CcCCCCHHHHHHHHHHHH----h--CCCeEEEE-EEeCCCC
Confidence 466677776655443333 2 46889997 7787653
No 47
>2ln3_A De novo designed protein OR135; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=22.53 E-value=1e+02 Score=16.57 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=16.3
Q ss_pred CHHHHHHHHHHHHHHHhhcCC
Q psy17875 66 SPEQLFEAVTEAEKLSKLYNR 86 (107)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~ 86 (107)
|..++.+-.++|+++.|++|-
T Consensus 37 ddkeieeferdmedlakktgv 57 (83)
T 2ln3_A 37 DDKEIEEFERDMEDLAKKTGV 57 (83)
T ss_dssp CHHHHHHHHHHHHHHHHHHTC
T ss_pred ChHHHHHHHhHHHHHHHhhch
Confidence 355677777899999999874
No 48
>3uws_A Hypothetical protein; clostripain family protein, peptidase_C11, structural genomi center for structural genomics, JCSG; HET: MSE; 1.70A {Parabacteroides merdae}
Probab=22.47 E-value=96 Score=18.59 Aligned_cols=32 Identities=13% Similarity=0.068 Sum_probs=27.3
Q ss_pred ECHHHHHHHHHhhhcCCCeeEEEEeeeeEeCC
Q psy17875 8 ISEDVYFSMFYLALSNDKLEVLSMLIGETKEE 39 (107)
Q Consensus 8 i~~~~~~~i~~ha~~~~p~E~cGlL~G~~~~~ 39 (107)
-++..+..++.-+.+.+|.+--||++|.-+.+
T Consensus 84 ~d~~~l~~~l~~~~~~~PA~~y~LIlw~HG~G 115 (126)
T 3uws_A 84 ADPDVMRSVIGEVVSQYPADSYGLVLWSHGTA 115 (126)
T ss_dssp TSHHHHHHHHHHHHHHSCEEEEEEEEESCBCT
T ss_pred CCHHHHHHHHHHHHHhCCccceEEEEEeCCCc
Confidence 36788999999999999999999999876543
No 49
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}
Probab=22.25 E-value=26 Score=24.51 Aligned_cols=9 Identities=33% Similarity=0.955 Sum_probs=7.2
Q ss_pred EEEEccCCC
Q psy17875 91 IGWFHSHPH 99 (107)
Q Consensus 91 vG~yHSHP~ 99 (107)
.=|||||..
T Consensus 100 t~wyH~H~~ 108 (339)
T 2zwn_A 100 TLWYHCHVN 108 (339)
T ss_dssp EEEEECCSS
T ss_pred EEEEEecCC
Confidence 469999975
No 50
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus}
Probab=21.48 E-value=76 Score=23.05 Aligned_cols=35 Identities=11% Similarity=0.111 Sum_probs=21.6
Q ss_pred CceEEeCHHHHHHHHHHHHHHHhhcCCCceEEEEEccCCCCC
Q psy17875 60 HDRVEASPEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHIT 101 (107)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~yHSHP~~~ 101 (107)
..+|=++++++.++.+.+. + .+++++|+ |+|....
T Consensus 167 ~~RfG~~~~~~~~~~~~~~----~--~~l~~~Gl-~~H~gs~ 201 (448)
T 3btn_A 167 NMKFGTTLKNCRHLLECAK----E--LDVQIIGV-KFHVSSA 201 (448)
T ss_dssp -CCCCBCHHHHHHHHHHHH----H--HTCEEEEE-ECCCCTT
T ss_pred CCcCCCCHHHHHHHHHHHH----h--CCCCEEEE-EEECCCC
Confidence 3567777776655443333 2 26889997 7887654
No 51
>3m94_A Translation initiation factor 4E; EIF4E, berkeley structural genomics center, BSGC; HET: M7M; 2.05A {Ascaris suum} SCOP: d.86.1.0 PDB: 3m93_A*
Probab=21.23 E-value=80 Score=20.43 Aligned_cols=29 Identities=0% Similarity=0.166 Sum_probs=17.5
Q ss_pred HHHHHHHHhhhcC----CCeeEEEEeeeeEeCC
Q psy17875 11 DVYFSMFYLALSN----DKLEVLSMLIGETKEE 39 (107)
Q Consensus 11 ~~~~~i~~ha~~~----~p~E~cGlL~G~~~~~ 39 (107)
..+..++..+..+ ...|+||+.+......
T Consensus 94 ~~W~~lll~~IGe~f~~~~~~IcGvvvsvR~~~ 126 (189)
T 3m94_A 94 HYWLELLMAIIGEQFEDNGEYICGAVVNVRQKG 126 (189)
T ss_dssp HHHHHHHHHHHTTCSGGGGGGEEEEEEECCSSC
T ss_pred HHHHHHHHHHhCCcccccCCcCceEEEEEecCC
Confidence 4445555444432 3579999998766433
No 52
>3r79_A Uncharacterized protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium, TIM barrel; HET: PLP; 1.90A {Agrobacterium tumefaciens}
Probab=21.11 E-value=1.6e+02 Score=19.63 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=21.5
Q ss_pred ceEEeCHHHHHHHHHHHHHHHhhcCCCceEEEEEccCCCCC
Q psy17875 61 DRVEASPEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHIT 101 (107)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~yHSHP~~~ 101 (107)
.++=+.|+++.+..+.+.+ -.++++.|++ ||+...
T Consensus 137 ~R~Gv~~ee~~~l~~~i~~-----l~~L~l~Glm-Th~a~~ 171 (244)
T 3r79_A 137 QKAGIDPRETVAFVAFCRD-----ELKLPVEGLM-CIPPAE 171 (244)
T ss_dssp TSCSBCHHHHHHHHHHHHH-----TSCCCCCEEE-CCCCTT
T ss_pred CCCCCCHHHHHHHHHHHHc-----CCCCEEEEEE-ecCCCC
Confidence 4555667776655433333 2568999998 586543
No 53
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens}
Probab=20.58 E-value=90 Score=22.89 Aligned_cols=35 Identities=14% Similarity=0.070 Sum_probs=22.1
Q ss_pred CceEEeCHHHHHHHHHHHHHHHhhcCCCceEEEEEccCCCCC
Q psy17875 60 HDRVEASPEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHIT 101 (107)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~yHSHP~~~ 101 (107)
..+|=++++++.++.+.+.+ .+++++|+ |+|....
T Consensus 177 ~~RfG~~~~~~~~~~~~~~~------~~l~l~Gl-h~H~gs~ 211 (471)
T 2oo0_A 177 SVKFGATLRTSRLLLERAKE------LNIDVVGV-SFHVGSG 211 (471)
T ss_dssp TTTSCBCHHHHHHHHHHHHH------TTCEEEEE-EECCCBS
T ss_pred CCCCCCCHHHHHHHHHHHHh------CCCcEEEE-EEeCCCC
Confidence 35677777766555433333 36889997 7786643
No 54
>1l8b_A Eukaryotic translation initiation factor 4E; eukaryotic initiation factor 4E, EIF4E, CAP, 7-METHYLGPPPG, RNA binding protein; HET: MGP; 1.80A {Mus musculus} SCOP: d.86.1.1 PDB: 1ej4_A* 1ejh_A* 1ej1_A* 1wkw_A* 3am7_A*
Probab=20.52 E-value=93 Score=20.03 Aligned_cols=28 Identities=4% Similarity=0.142 Sum_probs=16.4
Q ss_pred HHHHHHHHhhhc----CCCeeEEEEeeeeEeC
Q psy17875 11 DVYFSMFYLALS----NDKLEVLSMLIGETKE 38 (107)
Q Consensus 11 ~~~~~i~~ha~~----~~p~E~cGlL~G~~~~ 38 (107)
..++.++..+.. ....|+||+.+-....
T Consensus 101 ~~W~~lll~~IGe~f~~~~d~IcGvvvsvR~~ 132 (190)
T 1l8b_A 101 RFWLETLLCLIGESFDDYSDDVCGAVVNVRAK 132 (190)
T ss_dssp HHHHHHHHHHHTTTTGGGGGGEEEEEEEECSS
T ss_pred HHHHHHHHHHhhcccccCCCceeeEEEEeecC
Confidence 444555544432 2246899999865543
Done!