RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17875
(107 letters)
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated
deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens}
PDB: 3rzu_A
Length = 211
Score = 58.9 bits (142), Expect = 4e-12
Identities = 18/103 (17%), Positives = 33/103 (32%), Gaps = 15/103 (14%)
Query: 7 YISEDVYFSMFYLALSNDK--LEVLSMLIGETKEEKGVKSVHVYTMVIPLRLTSKHDRVE 64
+ + LA +N + +L G+ + + ++IP +
Sbjct: 45 VVPGRLCPQFLQLASANTARGVATCGILCGKLMRNE----FTITHVLIPKQSAGSDY--- 97
Query: 65 ASPEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITVWPSDV 107
E E + L +GW H+HP T + S V
Sbjct: 98 ------CNTENEEELFLIQDQQGLITLGWIHTHPTQTAFLSSV 134
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Salinibacter
ruber dsm 13855}
Length = 153
Score = 53.9 bits (129), Expect = 1e-10
Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 7/100 (7%)
Query: 8 ISEDVYFSMFYLALSNDKLEVLSMLIGETKEEKGVKSVHVYTMVIPLRLTSKHDRVEASP 67
+ D+ + E L+G ++ + ++ R + R E +
Sbjct: 3 TTPDILDQIRVHGADAYPEEGCGFLLGTVTDDGDNRVAALHRAT-NRRSEQRTRRYELTA 61
Query: 68 EQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITVWPSDV 107
+ A A++ + L V+G +HSHP PS
Sbjct: 62 DDYRAADAAAQE------QGLDVVGVYHSHPDHPARPSAT 95
>2znr_A AMSH-like protease; metal binding protein, alternative splicing,
hydrolase, metal-binding, metalloprotease, UBL
conjugation pathway, zinc; 1.20A {Homo sapiens} PDB:
2znv_A
Length = 178
Score = 53.5 bits (128), Expect = 3e-10
Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 15/103 (14%)
Query: 7 YISEDVYFSMFYLALSN--DKLEVLSMLIGETKEEKGVKSVHVYTMVIPLRLTSKHDRVE 64
+ ED+ LA SN +E +L G+ + T VI + ++ D +
Sbjct: 12 VLPEDLCHKFLQLAESNTVRGIETCGILCGKL-----THNEFTITHVIVPKQSAGPDYCD 66
Query: 65 ASPEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITVWPSDV 107
E + +L +GW H+HP T + S V
Sbjct: 67 MENV--------EELFNVQDQHDLLTLGWIHTHPTQTAFLSSV 101
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein
structure initiati northeast structural genomics
consortium; NMR {Desulfitobacterium hafniense}
Length = 146
Score = 48.8 bits (116), Expect = 1e-08
Identities = 20/102 (19%), Positives = 30/102 (29%), Gaps = 12/102 (11%)
Query: 7 YISEDVYFSMFYLALSNDKLEVLSMLIGETKEEKGVKSVHVYTMVIPLR-LTSKHDRVEA 65
+++ M A E +L G + V PL L +
Sbjct: 3 TLTKKQMEEMLAHARQALPNEACGLLGGRRDGDDRWV-----ERVYPLNNLDQSPEHFSM 57
Query: 66 SPEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITVWPSDV 107
P + AV + ++G FHSHP PS
Sbjct: 58 DPREQLTAVKDMR------KNGWVMLGNFHSHPATPARPSAE 93
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34,
JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P
ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Length = 187
Score = 32.3 bits (73), Expect = 0.015
Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 8/83 (9%)
Query: 20 ALSNDKLEVLSMLIGETKEEKGVKSVHVY-TMVIPLRLTSKHDRVEASPEQLFEAVTEAE 78
++ V+ +L+G ++ K + V + +P K D V E
Sbjct: 28 GKVGNQKRVVGVLLGSWQK----KVLDVSNSFAVPFDEDDKDDSVWFLDHDYLE---NMY 80
Query: 79 KLSKLYNRELRVIGWFHSHPHIT 101
+ K N R++GW+H+ P +
Sbjct: 81 GMFKKVNARERIVGWYHTGPKLH 103
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.019
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 61 DRVEASPEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITVWPSD 106
D ++ S E L E + K++ + L ++ W +P T P
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE-NPSNT--PDK 228
Score = 27.3 bits (60), Expect = 1.2
Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 21/103 (20%)
Query: 13 YFSMFYLALSNDKLEVLSMLIG--ETKEEKGVKSVHVYTMVIPLRLTSKHDRVEASPEQL 70
F YL ND + + L+ +T K + + Y R+ +K + S L
Sbjct: 90 EFENCYLE-GNDIHALAAKLLQENDTTLVKTKELIKNYITA---RIMAKRPFDKKSNSAL 145
Query: 71 FEAVTEAEKLSKLY-------N-----RELRVIGWFHSHPHIT 101
F AV E ++L N ELR + + H +
Sbjct: 146 FRAVGEGN--AQLVAIFGGQGNTDDYFEELRDL-YQTYHVLVG 185
>2leq_A Uncharacterized protein; start domains, structural genomics,
PSI-biology, protein STR initiative; NMR {Cytophaga
hutchinsonii}
Length = 146
Score = 29.7 bits (67), Expect = 0.096
Identities = 6/41 (14%), Positives = 16/41 (39%), Gaps = 10/41 (24%)
Query: 63 VEASPEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITVW 103
+ A E+++EA+ E + + + ++ W
Sbjct: 13 INAPIEKVWEALVNPEIIKE----------YMFGTTVVSDW 43
>1x53_A Activator of 90 kDa heat shock protein ATPase homolog 1; AHA1,
HSP90,DUF704, C-terminal domain, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: d.129.3.5
Length = 145
Score = 29.5 bits (66), Expect = 0.13
Identities = 7/45 (15%), Positives = 14/45 (31%), Gaps = 10/45 (22%)
Query: 60 HDRVEASPEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITVWP 104
+ SPE+L+ T E + + H+ +
Sbjct: 16 KETFLTSPEELYRVFTTQELVQA----------FTHAPATLEADR 50
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination,
archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP:
c.97.3.1 PDB: 1r5x_A
Length = 124
Score = 29.2 bits (65), Expect = 0.16
Identities = 20/102 (19%), Positives = 32/102 (31%), Gaps = 23/102 (22%)
Query: 5 VAYISEDVYFSMFYLALSNDKLEVLSMLIGETKEEKGVKSVHVYTMVIPLRLTSKHDRVE 64
IS + ++ A S E +++L G V +I L S
Sbjct: 3 SMKISRGLLKTILEAAKSAHPDEFIALLSGSKD---------VMDELIFLPFVSGSVSAV 53
Query: 65 ASPEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITVWPSD 106
+ L ++V G HSHP + PS+
Sbjct: 54 IHLDML--------------PIGMKVFGTVHSHPSPSCRPSE 81
>1xn6_A Hypothetical protein BC4709; structural genomics, protein
structure initiative, PSI, NESG target protein BCR68,
alpha + beta; NMR {Bacillus cereus} SCOP: d.129.3.5
Length = 143
Score = 29.0 bits (65), Expect = 0.16
Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 62 RVEASPEQLFEAVTEAEKLSKLY---NRELRVIGWFH 95
AS ++++ V+ AE ++ + + L V FH
Sbjct: 15 VFNASIQKVWSVVSTAEGIASWFMPNDFVLEVGHEFH 51
>1xn5_A BH1534 unknown conserved protein; structural genomics, protein
structure initiative, PSI, BACI halodurans protein
BH1534, alpha + beta; NMR {Bacillus halodurans} SCOP:
d.129.3.5
Length = 146
Score = 27.9 bits (62), Expect = 0.42
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 62 RVEASPEQLFEAVTEAEKLSK 82
R A E+++EAV+ +E L+
Sbjct: 12 RFNAPIEKVWEAVSTSEGLAF 32
>2kew_A Uncharacterized protein YNDB; start domain, resonance
assignments, lipid binding, structural genomics,
unknown FU PSI-2; NMR {Bacillus subtilis subsp} PDB:
2kte_A
Length = 152
Score = 27.8 bits (62), Expect = 0.43
Identities = 9/37 (24%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 62 RVEASPEQLFEAVTEAEKLSKLY---NRELRVIGWFH 95
+EA ++++E V+ +E ++K + + +L+ FH
Sbjct: 17 TLEAPIQKVWETVSTSEGIAKWFMPNDFQLKEGQEFH 53
>2lak_A AHSA1-like protein RHE_CH02687; NESG, structural genomics,
northeast structural genomics CON PSI-biology, structure
genomics, unknown function; NMR {Rhizobium etli}
Length = 160
Score = 28.2 bits (63), Expect = 0.44
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 10/43 (23%)
Query: 62 RVEASPEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITVWP 104
+ A P +F +T+ EK+ + W + + P
Sbjct: 16 HLAAPPAAVFALMTDPEKILR----------WMGTEAEVEPEP 48
>3q63_A MLL2253 protein; structural genomics, PSI-biology, protein
structure initiati alpha-beta protein, unknown,
structure genomics; 2.00A {Mesorhizobium loti}
Length = 151
Score = 27.8 bits (62), Expect = 0.50
Identities = 5/21 (23%), Positives = 13/21 (61%)
Query: 62 RVEASPEQLFEAVTEAEKLSK 82
++ PE+L+ A+T+ + +
Sbjct: 16 QISHPPEKLWRALTQPHLIEE 36
>2k5g_A Uncharacterized protein; structural genomiccs, protein structure,
structural genomics, PSI-2, protein structure
initiative; NMR {Bordetella parapertussis} SCOP:
d.129.3.5
Length = 191
Score = 27.7 bits (61), Expect = 0.68
Identities = 5/41 (12%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 62 RVEASPEQLFEAVTEAEKLSK---LYNRELRVIGWFHSHPH 99
+ E+++ + +A+K ++ + F H +
Sbjct: 26 LLPGPIERVWAWLADADKRARWLAGGELPRQPGQTFELHFN 66
>3ni8_A PFC0360W protein; heat shock, malaria, ATPase, structural
genomics consortium, unknown function; 2.50A
{Plasmodium falciparum}
Length = 158
Score = 27.6 bits (61), Expect = 0.70
Identities = 8/40 (20%), Positives = 12/40 (30%), Gaps = 10/40 (25%)
Query: 60 HDRVEASPEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPH 99
+ PE LF A T+A L++
Sbjct: 24 TEEYYVPPEVLFNAFTDAYTLTR----------LSRGSLA 53
>3q6a_A Uncharacterized protein; structural genomics, PSI-biology; 1.80A
{Staphylococcus saprophyticus subsp}
Length = 135
Score = 27.1 bits (60), Expect = 0.73
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 62 RVEASPEQLFEAVTEAEKLSK 82
+V+ E +FEA + EK+
Sbjct: 8 QVDVPRETVFEAFVDPEKIGG 28
>2l8o_A Uncharacterized protein; mixed alpha-beta protein, PSI-biology,
structural genomics, structure initiative; NMR
{Cytophaga hutchinsonii}
Length = 144
Score = 27.2 bits (60), Expect = 0.87
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 10/41 (24%)
Query: 62 RVEASPEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITV 102
V A+ E++++ E + K W + P V
Sbjct: 9 TVYAAIEKVWKYWNEPAHIMK----------WCQASPEWHV 39
>3q64_A MLL3774 protein; structural genomics, PSI-biology, protein
structure initiati northeast structural genomics
consortium, NESG; 1.50A {Mesorhizobium loti}
Length = 162
Score = 26.8 bits (59), Expect = 1.2
Identities = 7/41 (17%), Positives = 13/41 (31%), Gaps = 10/41 (24%)
Query: 62 RVEASPEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITV 102
A P ++F A+ A+ + WF +
Sbjct: 16 LYPAPPSKVFFALGNADAKRR----------WFTDPDNPMP 46
>3pu2_A Uncharacterized protein; SRPBCC superfamily, PSI-biology, NESG,
RHR263, structural GE protein structure initiative; HET:
MSE; 2.61A {Rhodobacter sphaeroides}
Length = 164
Score = 26.7 bits (59), Expect = 1.5
Identities = 9/41 (21%), Positives = 13/41 (31%), Gaps = 10/41 (24%)
Query: 62 RVEASPEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITV 102
A+PEQL+ A+T L W +
Sbjct: 20 HFAATPEQLWAALTSPALLPA----------WLFARGWPMT 50
>3eli_A AHSA1, AHA1 domain protein; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; 2.80A
{Silicibacter pomeroyi} SCOP: d.129.3.5
Length = 152
Score = 26.3 bits (58), Expect = 1.5
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 62 RVEASPEQLFEAVTEAEKLSK 82
+PE LF V++ KL +
Sbjct: 9 EFAVAPEALFAWVSDGAKLLQ 29
>2lcg_A Uncharacterized protein; start domain, structural genomics,
northeast structural GENO consortium, NESG, unknown
function, AHSA1; NMR {Ralstonia metallidurans}
Length = 142
Score = 26.4 bits (58), Expect = 1.6
Identities = 6/41 (14%), Positives = 12/41 (29%), Gaps = 10/41 (24%)
Query: 62 RVEASPEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITV 102
V A +++ A T E + + W +
Sbjct: 8 TVAAPVGKVWRAYTTPEDIKQ----------WNAASDDWHT 38
>1z94_A Conserved hypothetical protein; NESG, CV1439, structural genomics,
PSI structure initiative; 2.10A {Chromobacterium
violaceum} SCOP: d.129.3.5
Length = 147
Score = 25.9 bits (57), Expect = 2.0
Identities = 7/41 (17%), Positives = 14/41 (34%), Gaps = 10/41 (24%)
Query: 62 RVEASPEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITV 102
+ A PE+++ A + L+K W +
Sbjct: 10 VLSAPPERVYRAFLDPLALAK----------WLPPEGFVCK 40
>2il5_A Hypothetical protein; structural genomics, APC23650, PSI-2,
structure initiative; 2.30A {Staphylococcus aureus
subsp} SCOP: d.129.3.5
Length = 171
Score = 26.3 bits (58), Expect = 2.0
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 62 RVEASPEQLFEAVTEAEKLSK 82
+ SPE ++EA T+ + L +
Sbjct: 21 LYKFSPELVYEAWTKKDLLKQ 41
>3rd6_A MLL3558 protein; structural genomics, PSI-biology, northeast
structural genom consortium, NESG, unknown function;
2.80A {Mesorhizobium loti}
Length = 161
Score = 26.0 bits (57), Expect = 2.0
Identities = 7/41 (17%), Positives = 13/41 (31%), Gaps = 10/41 (24%)
Query: 62 RVEASPEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITV 102
SP+++F A + + + W TV
Sbjct: 15 TYPQSPDRVFHAFADKATVRR----------WRVDGDGFTV 45
>1xfs_A NC_840354, conserved hypothetical protein; structural genomics,
protein structure initiative, NESG, ALP protein, PSI;
1.70A {Nitrosomonas europaea} SCOP: d.129.3.5
Length = 178
Score = 26.1 bits (57), Expect = 2.5
Identities = 8/41 (19%), Positives = 12/41 (29%), Gaps = 10/41 (24%)
Query: 62 RVEASPEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITV 102
+ ++ +TE E L K WF P
Sbjct: 17 ELAVPVNLVWRGLTEPELLKK----------WFVPKPWSIS 47
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A
{Caenorhabditis elegans} PDB: 2p87_A
Length = 273
Score = 25.7 bits (56), Expect = 3.4
Identities = 16/83 (19%), Positives = 36/83 (43%), Gaps = 14/83 (16%)
Query: 18 YLALSNDKLEVLSMLIGET-KEEKGVKSVHVYTMVIPLRLTSKHDRVEASPEQLFEAVTE 76
++ +S+ + ++ + G + + VK + +V+ + S H +V P QL +
Sbjct: 51 FITISDLRTQIAGFMYGVSPPDNPQVKEIR--CIVLVPQTGS-HQQVN-LPTQLPDHE-- 104
Query: 77 AEKLSKLYNRELRVIGWFHSHPH 99
R+ +GW H+ P+
Sbjct: 105 -------LLRDFEPLGWMHTQPN 120
>3put_A Hypothetical conserved protein; structural genomics, PSI-biology,
protein structure initiati northeast structural
genomics consortium; 1.83A {Rhizobium etli cfn 42} PDB:
3otl_A*
Length = 166
Score = 25.6 bits (56), Expect = 3.4
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 62 RVEASPEQLFEAVTEAEKLSK 82
R+ A ++F A + E +
Sbjct: 16 RLTAPVARVFRAWSTPESKRQ 36
>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB:
2rog_A
Length = 66
Score = 24.5 bits (54), Expect = 3.7
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 9/39 (23%)
Query: 41 GVKSVHVYTMVIPLRLTSKHDRVE--ASPEQLFEAVTEA 77
GV+ V V L VE A P+ L +AV E
Sbjct: 27 GVEKVEV-------SLEKGEALVEGTADPKALVQAVEEE 58
>2lf2_A Uncharacterized protein; NESG, structural genomics, PSI-biology,
protein structure in northeast structural genomics
consortium; NMR {Cytophaga hutchinsonii}
Length = 175
Score = 25.3 bits (55), Expect = 3.8
Identities = 9/41 (21%), Positives = 13/41 (31%), Gaps = 10/41 (24%)
Query: 62 RVEASPEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITV 102
A ++EA T AE L + W+ P
Sbjct: 23 EFAAVRAIVWEAFTRAEILDQ----------WWAPKPWKAK 53
>2lgh_A Uncharacterized protein; AHSA1, start domain, COG3832, PF08327,
HSP90, heat shock, ST genomics, PSI-biology; NMR
{Aeromonas hydrophila subsp}
Length = 144
Score = 25.2 bits (55), Expect = 4.4
Identities = 3/20 (15%), Positives = 11/20 (55%)
Query: 63 VEASPEQLFEAVTEAEKLSK 82
+E E ++ A + + +++
Sbjct: 9 IEQEIEAVWWAWNDPDCIAR 28
>2l9p_A Uncharacterized protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Staphylococcus epidermidis}
Length = 164
Score = 24.9 bits (54), Expect = 5.1
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 62 RVEASPEQLFEAVTEAEKLSK 82
A ++F+A T+ E +
Sbjct: 15 TFSAPINKVFDAYTKRELFEQ 35
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P
N-terminal) domain, unknown function; 2.50A {Drosophila
melanogaster}
Length = 141
Score = 24.8 bits (54), Expect = 5.2
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 85 NRELRVIGWFHSHPHIT 101
+L IGW+ + + T
Sbjct: 83 FSDLDFIGWYTTGDNPT 99
>3uid_A Putative uncharacterized protein; SRPBCC superfamily, beta
sandwich, function, structural genomics, TB structural
genomics conso TBSGC; 1.57A {Mycobacterium smegmatis}
Length = 168
Score = 24.9 bits (54), Expect = 5.8
Identities = 3/21 (14%), Positives = 9/21 (42%)
Query: 62 RVEASPEQLFEAVTEAEKLSK 82
A ++++ + +L K
Sbjct: 20 EFAAPVTRIWQIYADPRQLEK 40
>2ldk_A Uncharacterized protein; structural genomics, northeast structural
genomics consortiu PSI-biology, protein structure
initiative; NMR {Arthrobacter aurescens}
Length = 172
Score = 24.9 bits (54), Expect = 5.9
Identities = 3/41 (7%), Positives = 12/41 (29%), Gaps = 10/41 (24%)
Query: 62 RVEASPEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITV 102
+A ++++ + +L + W+
Sbjct: 19 EFDADVKRVWAIWEDPRQLER----------WWGPPTWPAT 49
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding,
metal selectivity, ferredoxin fold, ATP-binding,
hydrolase; NMR {Arabidopsis thaliana}
Length = 95
Score = 24.0 bits (52), Expect = 7.2
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 41 GVKSVHVYTMVIPLRLTSKHDRVEASPEQLFEAVTEA 77
GVK V +V + HD + SP Q+ +A+ EA
Sbjct: 43 GVKEYSV--IVPSRTVIVVHDSLLISPFQIAKALNEA 77
>1xuv_A Hypothetical protein MM0500; alpha-beta protein, northeast
structural genomics consortium, NESG, structural
genomics; 2.10A {Methanosarcina mazei GO1} SCOP:
d.129.3.5
Length = 178
Score = 24.6 bits (53), Expect = 7.3
Identities = 5/21 (23%), Positives = 12/21 (57%)
Query: 62 RVEASPEQLFEAVTEAEKLSK 82
+A E +F+A T+ + ++
Sbjct: 29 EFDAPRELVFKAFTDPDLYTQ 49
>1zxf_A CALC; SELF-sacrificing resistance protein, structural genomics,
PSI, protein structure initiative; NMR {Micromonospora
echinospora} SCOP: d.129.3.5 PDB: 2gkc_A* 2gkd_A
2l65_A*
Length = 155
Score = 24.6 bits (53), Expect = 7.5
Identities = 4/15 (26%), Positives = 7/15 (46%)
Query: 62 RVEASPEQLFEAVTE 76
V+A + F+ E
Sbjct: 11 TVKADRKTAFKTFLE 25
>2xu9_A Laccase; oxidoreductase, multicopper oxidases; 1.50A {Thermus
thermophilus} PDB: 2xuw_A 2xvb_A 2yae_A 2yaf_A 2yah_A
2yam_A 2yao_A 2yap_A 2yaq_A 2yar_A 4ai7_A
Length = 439
Score = 24.4 bits (53), Expect = 8.9
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 93 WFHSHPHITVWP 104
W+H H H V P
Sbjct: 110 WYHPHLHGRVAP 121
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.34A {Sinorhizobium meliloti}
Length = 387
Score = 24.4 bits (53), Expect = 9.9
Identities = 3/23 (13%), Positives = 10/23 (43%)
Query: 63 VEASPEQLFEAVTEAEKLSKLYN 85
V + + +A+ + S+ +
Sbjct: 365 VTITVPAVRDAILALDAFSRSIH 387
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.384
Gapped
Lambda K H
0.267 0.0608 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,603,551
Number of extensions: 80550
Number of successful extensions: 263
Number of sequences better than 10.0: 1
Number of HSP's gapped: 261
Number of HSP's successfully gapped: 59
Length of query: 107
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 35
Effective length of database: 4,691,481
Effective search space: 164201835
Effective search space used: 164201835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.7 bits)