RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17875
(107 letters)
>d1oi0a_ c.97.3.1 (A:) Hypothetical protein AF2198 {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 121
Score = 35.4 bits (81), Expect = 3e-04
Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 23/101 (22%)
Query: 7 YISEDVYFSMFYLALSNDKLEVLSMLIGETKEEKGVKSVHVYTMVIPLRLTSKHDRVEAS 66
IS + ++ A S E +++L G +I L S
Sbjct: 5 KISRGLLKTILEAAKSAHPDEFIALLSGSKDVM---------DELIFLPFVSGSVSAVIH 55
Query: 67 PEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITVWPSDV 107
+ L ++V G HSHP + PS+
Sbjct: 56 LDML--------------PIGMKVFGTVHSHPSPSCRPSEE 82
>d2il5a1 d.129.3.5 (A:5-168) Hypothetical protein SA2116
{Staphylococcus aureus [TaxId: 1280]}
Length = 164
Score = 27.2 bits (59), Expect = 0.30
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 63 VEASPEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITVW 103
+ SPE ++EA T+ + L + + R +
Sbjct: 15 YKFSPELVYEAWTKKDLLKQWFMTSARTNKEIEADVKEGGK 55
>d1xfsa_ d.129.3.5 (A:) Hypothetical protein NE0264 {Nitrosomonas
europaea [TaxId: 915]}
Length = 165
Score = 26.7 bits (58), Expect = 0.47
Identities = 8/44 (18%), Positives = 12/44 (27%), Gaps = 10/44 (22%)
Query: 62 RVEASPEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITVWPS 105
+ ++ +TE E L K WF P
Sbjct: 12 ELAVPVNLVWRGLTEPELLKK----------WFVPKPWSISDCR 45
>d1z94a1 d.129.3.5 (A:2-144) Hypothetical protein CV1439
{Chromobacterium violaceum [TaxId: 536]}
Length = 143
Score = 26.3 bits (57), Expect = 0.54
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 60 HDRVEASPEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITVWP 104
H + A PE+++ A + L+K E G+
Sbjct: 7 HRVLSAPPERVYRAFLDPLALAKWLPPE----GFVCKVLEHDARV 47
>d3elia1 d.129.3.5 (A:2-144) Uncharacterized protein SPO3351
{Silicibacter pomeroyi [TaxId: 89184]}
Length = 143
Score = 25.5 bits (55), Expect = 1.0
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 62 RVEASPEQLFEAVTEAEKLSKLY 84
+PE LF V++ KL + +
Sbjct: 8 EFAVAPEALFAWVSDGAKLLQWW 30
>d1x53a1 d.129.3.5 (A:8-139) Activator of 90 kda heat shock
protein ATPase homolog 1, AHSA1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 132
Score = 25.3 bits (55), Expect = 1.2
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 52 IPLRLTSKHDRVEASPEQLFEAVTEAEKLSKLY 84
IP + + SPE+L+ T E +
Sbjct: 1 IPTCKITLKETFLTSPEELYRVFTTQELVQAFT 33
>d1xn6a_ d.129.3.5 (A:) Hypothetical protein BC4709 {Bacillus
cereus [TaxId: 1396]}
Length = 143
Score = 25.5 bits (55), Expect = 1.3
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 62 RVEASPEQLFEAVTEAEKLSKLYNRE---LRVIGWFHSH 97
AS ++++ V+ AE ++ + L V FH
Sbjct: 15 VFNASIQKVWSVVSTAEGIASWFMPNDFVLEVGHEFHVQ 53
>d1xn5a_ d.129.3.5 (A:) Hypothetical protein BH1534 {Bacillus
halodurans [TaxId: 86665]}
Length = 138
Score = 25.2 bits (54), Expect = 1.6
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 62 RVEASPEQLFEAVTEAEKLSK 82
R A E+++EAV+ +E L+
Sbjct: 12 RFNAPIEKVWEAVSTSEGLAF 32
>d2k5ga1 d.129.3.5 (A:1-183) Uncharacterized protein BPP1335
{Bordetella parapertussis [TaxId: 519]}
Length = 183
Score = 25.1 bits (54), Expect = 1.6
Identities = 3/21 (14%), Positives = 12/21 (57%)
Query: 62 RVEASPEQLFEAVTEAEKLSK 82
+ E+++ + +A+K ++
Sbjct: 26 LLPGPIERVWAWLADADKRAR 46
>d2nn5a1 d.129.3.5 (A:1-160) Hypothetical protein EF2215
{Enterococcus faecalis [TaxId: 1351]}
Length = 160
Score = 25.1 bits (54), Expect = 1.8
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 62 RVEASPEQLFEAVTEAEKLSK 82
+ ASP+ ++ +TE +KL +
Sbjct: 19 AISASPQTIWRYLTETDKLKQ 39
>d1xuva_ d.129.3.5 (A:) Hypothetical protein MM0500 {Methanosarcina
mazei [TaxId: 2209]}
Length = 163
Score = 24.8 bits (53), Expect = 2.0
Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 10/44 (22%)
Query: 62 RVEASPEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITVWPS 105
+A E +F+A T+ + ++ W T
Sbjct: 19 EFDAPRELVFKAFTDPDLYTQ----------WIGPRGFTTALKI 52
>d1acca_ f.11.1.1 (A:) Anthrax protective antigen {Anthrax bacillus
(Bacillus anthracis) [TaxId: 1392]}
Length = 722
Score = 24.5 bits (53), Expect = 3.6
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 18 YLALSNDKLEVLSMLIGETKEEKGVKSV 45
L + D ++LS I E ++ +G+K V
Sbjct: 615 LLNIDKDIRKILSGYIVEIEDTEGLKEV 642
>d2hc5a1 d.352.1.1 (A:1-109) Hypothetical protein YvyC {Bacillus
subtilis [TaxId: 1423]}
Length = 109
Score = 23.2 bits (50), Expect = 5.4
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 64 EASPEQLFEAVTEAEKLSKLYNRELR 89
+ S L E V E KL + L+
Sbjct: 34 QVSYTNLAEMVGEMNKLLEPSQVHLK 59
>d1t23a_ d.247.1.1 (A:) Chromosomal protein MC1 {Archaeon
Methanosarcina thermophila [TaxId: 2210]}
Length = 93
Score = 22.9 bits (49), Expect = 6.8
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 39 EKGVKSVHVYTMVIPLRLTSKHDRVEASPEQLFEAVTEAEKLSKL 83
E+G K VHV+ D + P + E +++ + K
Sbjct: 49 ERGTKKVHVFKAWK-----EIVDAPKNRPAWMPEKISKP-FVKKE 87
>d2clyc1 f.45.1.1 (C:5-70) ATPase subunit F6 {Cow (Bos taurus)
[TaxId: 9913]}
Length = 66
Score = 22.3 bits (48), Expect = 8.1
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 63 VEASPEQLFEAVTEAEKLSKLYN 85
V+A PE + E KL ++Y
Sbjct: 26 VDAGPEYQQDLDRELFKLKQMYG 48
>d1b5ta_ c.1.23.1 (A:) Methylenetetrahydrofolate reductase
{Escherichia coli [TaxId: 562]}
Length = 275
Score = 23.2 bits (49), Expect = 9.3
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 39 EKGVKSVHVYTM 50
+GVK H YT+
Sbjct: 246 REGVKDFHFYTL 257
>d2psoa1 d.129.3.2 (A:908-1104) Star-related lipid transfer protein
13 {Human (Homo sapiens) [TaxId: 9606]}
Length = 197
Score = 23.1 bits (49), Expect = 9.7
Identities = 11/54 (20%), Positives = 18/54 (33%)
Query: 53 PLRLTSKHDRVEASPEQLFEAVTEAEKLSKLYNRELRVIGWFHSHPHITVWPSD 106
PL+L VEA P + V L + +V+ I + +
Sbjct: 42 PLKLWKASVEVEAPPSVVLNRVLRERHLWDEDFVQWKVVETLDRQTEIYQYVLN 95
>d1tifa_ d.15.8.1 (A:) Translation initiation factor IF3,
N-terminal domain {Bacillus stearothermophilus [TaxId:
1422]}
Length = 76
Score = 22.4 bits (48), Expect = 9.9
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 31 MLIGETKEEKGVKSVHVYTMVIPLRLTSKHDRVEASPEQ 69
LI + ++ G+KS + + D V +P
Sbjct: 15 RLIDQNGDQLGIKSKQE---ALEIAARRNLDLVLVAPNA 50
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.384
Gapped
Lambda K H
0.267 0.0646 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 380,811
Number of extensions: 14244
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 29
Length of query: 107
Length of database: 2,407,596
Length adjustment: 67
Effective length of query: 40
Effective length of database: 1,487,686
Effective search space: 59507440
Effective search space used: 59507440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.1 bits)