BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17877
         (1262 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3QY9|A Chain A, The Crystal Structure Of Dihydrodipicolinate Reductase
           From Staphylococcus Aureus
 pdb|3QY9|B Chain B, The Crystal Structure Of Dihydrodipicolinate Reductase
           From Staphylococcus Aureus
 pdb|3QY9|C Chain C, The Crystal Structure Of Dihydrodipicolinate Reductase
           From Staphylococcus Aureus
 pdb|3QY9|D Chain D, The Crystal Structure Of Dihydrodipicolinate Reductase
           From Staphylococcus Aureus
          Length = 243

 Score = 32.7 bits (73), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 29/52 (55%)

Query: 559 AFAKSDSVTVQATLPTLTMPTLGVSFNFPVISSTPGTKTKVIDKLNIMTSDL 610
           A  K   V +  + P L  P L   F+ P++ +T G K K+++KL+ ++ ++
Sbjct: 50  ADVKGADVAIDFSNPNLLFPLLDEDFHLPLVVATTGEKEKLLNKLDELSQNM 101


>pdb|1RH7|A Chain A, Crystal Structure Of Resistin-Like Beta
 pdb|1RH7|B Chain B, Crystal Structure Of Resistin-Like Beta
 pdb|1RH7|C Chain C, Crystal Structure Of Resistin-Like Beta
 pdb|1RH7|D Chain D, Crystal Structure Of Resistin-Like Beta
 pdb|1RH7|E Chain E, Crystal Structure Of Resistin-Like Beta
 pdb|1RH7|F Chain F, Crystal Structure Of Resistin-Like Beta
          Length = 81

 Score = 31.2 bits (69), Expect = 3.8,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 183 FDSEINLEYYLSEKKNSSQSIYCSLVSPHSMQLLAACPVGRWGANCTSKCDCGEI---NG 239
           F+S ++     +  +   ++I C+ V+  S   LA+CP G     C     CG     NG
Sbjct: 3   FESLVDQRIKEALSRQEPKTISCTSVT--SSGRLASCPAGMVVTGCACGYGCGSWDIRNG 60

Query: 240 NKCH 243
           N CH
Sbjct: 61  NTCH 64


>pdb|3OEO|A Chain A, The Crystal Structure E. Coli Spy
 pdb|3OEO|B Chain B, The Crystal Structure E. Coli Spy
 pdb|3OEO|C Chain C, The Crystal Structure E. Coli Spy
 pdb|3OEO|D Chain D, The Crystal Structure E. Coli Spy
          Length = 138

 Score = 30.4 bits (67), Expect = 6.6,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 604 NIMTSD-LEKSLKXXXXXXMNELNTSNILPTTTPRNSFYNVINSLDKTNDNARFDDELTS 662
           +I+TSD  +K         M E   +N+L     +N  YN++    K   NA F+  LT 
Sbjct: 66  DIITSDTFDKVKAEAQIAKMEEQRKANMLAHMETQNKIYNILTPEQKKQFNANFEKRLTE 125

Query: 663 R 663
           R
Sbjct: 126 R 126


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.131    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,728,183
Number of Sequences: 62578
Number of extensions: 1555226
Number of successful extensions: 2689
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2480
Number of HSP's gapped (non-prelim): 155
length of query: 1262
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1152
effective length of database: 8,089,757
effective search space: 9319400064
effective search space used: 9319400064
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)