Query psy17877
Match_columns 1262
No_of_seqs 46 out of 48
Neff 1.4
Searched_HMMs 46136
Date Sat Aug 17 01:17:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17877.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17877hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07271 Cytadhesin_P30: Cytad 97.9 0.00014 3.1E-09 77.3 12.2 9 834-842 88-96 (279)
2 PF07271 Cytadhesin_P30: Cytad 97.5 0.00077 1.7E-08 71.9 12.0 31 994-1025 179-209 (279)
3 PLN03086 PRLI-interacting fact 91.2 1.1 2.5E-05 52.1 10.0 65 113-181 319-388 (567)
4 TIGR00868 hCaCC calcium-activa 66.6 2 4.3E-05 52.1 0.2 86 114-207 98-189 (863)
5 PF04151 PPC: Bacterial pre-pe 61.7 22 0.00047 29.8 5.4 20 47-66 3-22 (70)
6 smart00051 DSL delta serrate l 59.2 7.1 0.00015 34.0 2.2 34 218-252 20-55 (63)
7 PF08434 CLCA_N: Calcium-activ 52.7 11 0.00024 40.8 2.8 132 1-165 1-149 (262)
8 PHA02629 A-type inclusion body 49.1 11 0.00025 33.4 1.8 24 211-234 7-30 (61)
9 PF05616 Neisseria_TspB: Neiss 19.3 3.8E+02 0.0083 32.0 7.9 41 1214-1254 454-496 (502)
10 PF05616 Neisseria_TspB: Neiss 18.4 4.1E+02 0.0088 31.8 7.8 30 1143-1172 436-468 (502)
No 1
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=97.86 E-value=0.00014 Score=77.32 Aligned_cols=9 Identities=33% Similarity=0.770 Sum_probs=4.6
Q ss_pred ccCCCCccc
Q psy17877 834 ASSGLPEYH 842 (1262)
Q Consensus 834 assglpeyh 842 (1262)
+.-|+|-|.
T Consensus 88 l~ig~p~~k 96 (279)
T PF07271_consen 88 LAIGIPIYK 96 (279)
T ss_pred Hhhcchhhh
Confidence 344555554
No 2
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=97.55 E-value=0.00077 Score=71.91 Aligned_cols=31 Identities=26% Similarity=0.494 Sum_probs=12.5
Q ss_pred CCCCCCCcccCCCCCCCCCCCCCCCCCcccCC
Q psy17877 994 NPTFPPVQNFNHTLPPMSNFNPTIPPVQNFNS 1025 (1262)
Q Consensus 994 NPN~PPR~amNPNlPSR~amNPNiPSR~amNP 1025 (1262)
+|+.++|+++|-..+.+..|++++. |+.||+
T Consensus 179 ~p~mt~RPg~~~~~p~~pg~~p~~~-RPG~~~ 209 (279)
T PF07271_consen 179 NPNMTSRPGFNQFTPGMPGMPPNTQ-RPGFTP 209 (279)
T ss_pred CCCCCCCCCCCcCCCCCCCCCCCCC-CCCCCC
Confidence 4444444444333333344433333 444444
No 3
>PLN03086 PRLI-interacting factor K; Provisional
Probab=91.19 E-value=1.1 Score=52.09 Aligned_cols=65 Identities=26% Similarity=0.344 Sum_probs=39.6
Q ss_pred CCCCcceEeeccc-CCCCcCCCCcccccccccCceEEcCCCC----CCccEEEEecCCCCccceEEEEEEeecC
Q psy17877 113 RPSDADFYVSTSV-EKPTYEPDTYDVQSASCGIDVVHIPESF----KRPVHISVYGHPAAETSVYILDVVHREE 181 (1262)
Q Consensus 113 ~~gDADlYVS~s~-~kPtyEpD~Yd~QSaTCG~DvV~IP~sf----kRPV~IgVYGHPs~e~S~y~L~Vv~~e~ 181 (1262)
+.+|.|||||..- ..|+- |.|.+.|..=|..++.|-..= .-=.+|||||-.. .-.|.|.|...+.
T Consensus 319 ~~~~~dlfvS~~~~~~p~~--~~h~~ss~~~~~k~l~~~~~~~~l~~~~~~i~v~~~~~--~~~~~l~~~~~~~ 388 (567)
T PLN03086 319 SGGDTDLYVSKHPLVFPTR--HQHEWSSHDMGSKVLILKSKDASLSSGTYSIGVYGFKG--TTKYQVSVSVQDN 388 (567)
T ss_pred CCCceEEEEcccccccccc--cccccccCccccceeEecCCCcccccceEEEEEeccCC--ceeEEEEEEeecc
Confidence 5679999999721 12333 455555555566665553211 2334689999877 4589998765433
No 4
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=66.65 E-value=2 Score=52.15 Aligned_cols=86 Identities=26% Similarity=0.371 Sum_probs=56.5
Q ss_pred CCCcceEeecccCCCCcCCCCcccccccccC--ceEEcCCCCCCccEEEEecCCC----CccceEEEEEEeecCCCCccc
Q psy17877 114 PSDADFYVSTSVEKPTYEPDTYDVQSASCGI--DVVHIPESFKRPVHISVYGHPA----AETSVYILDVVHREEPFDSEI 187 (1262)
Q Consensus 114 ~gDADlYVS~s~~kPtyEpD~Yd~QSaTCG~--DvV~IP~sfkRPV~IgVYGHPs----~e~S~y~L~Vv~~e~PFd~eI 187 (1262)
-..||+-|.... |-|+-+-|..|-..||. |.+|+...|-..=.+..||-+. ||-..|+--|+ +|.-+|.
T Consensus 98 ~~~Adv~v~~~~--~~~~d~pyt~q~~~Cg~~g~~i~~tp~~l~~~~~~~~g~~~r~~VheWah~R~Gvf-dEy~~~~-- 172 (863)
T TIGR00868 98 YKNADVIVAEPN--LPHGDDPYTLQYGNCGEKGEYIHFTPDFLLGKKLLIYGPRGRVFVHEWAHLRWGVF-DEYNNDQ-- 172 (863)
T ss_pred ccccCEEECCCC--CCCCCCcceeccCCCCCCCceEEEChHHhcCCcccccCcccchhhhhhhhhhcccc-cccccCC--
Confidence 456999998654 67887889999999997 8999998887666678888653 34444554443 2222222
Q ss_pred ccceeccccccCcceeeccc
Q psy17877 188 NLEYYLSEKKNSSQSIYCSL 207 (1262)
Q Consensus 188 NlEyy~SEKkns~~si~csl 207 (1262)
.||.+++++..- .-||.
T Consensus 173 --~fy~~~~~~~~~-t~cs~ 189 (863)
T TIGR00868 173 --PFYLSRNKKIEA-TRCSA 189 (863)
T ss_pred --cceecCCCCEEe-eeccc
Confidence 267665554332 34664
No 5
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=61.68 E-value=22 Score=29.76 Aligned_cols=20 Identities=20% Similarity=0.575 Sum_probs=16.8
Q ss_pred ceeEEEecccccEEEEEeec
Q psy17877 47 KYFHYSLNYQGPLSLYLTSK 66 (1262)
Q Consensus 47 nY~yy~Ln~~G~lsL~L~S~ 66 (1262)
.|+.|.+...|.|.|.|...
T Consensus 3 D~y~f~v~ag~~l~i~l~~~ 22 (70)
T PF04151_consen 3 DYYSFTVPAGGTLTIDLSGG 22 (70)
T ss_dssp EEEEEEESTTEEEEEEECET
T ss_pred EEEEEEEcCCCEEEEEEcCC
Confidence 37888899999999988776
No 6
>smart00051 DSL delta serrate ligand.
Probab=59.20 E-value=7.1 Score=34.01 Aligned_cols=34 Identities=18% Similarity=0.445 Sum_probs=28.4
Q ss_pred hCCCCcccCCCCCcccccc--ccCCccccccceeecc
Q psy17877 218 ACPVGRWGANCTSKCDCGE--INGNKCHHLTGTCILP 252 (1262)
Q Consensus 218 ~~p~g~w~anctskcdcge--ingnkchhltgtcilp 252 (1262)
.|+.+++|++|...|+|.. .++-.|+. .|.|+-.
T Consensus 20 ~C~~~~yG~~C~~~C~~~~d~~~~~~Cd~-~G~~~C~ 55 (63)
T smart00051 20 TCDENYYGEGCNKFCRPRDDFFGHYTCDE-NGNKGCL 55 (63)
T ss_pred eCCCCCcCCccCCEeCcCccccCCccCCc-CCCEecC
Confidence 5889999999999999863 67888987 6988754
No 7
>PF08434 CLCA_N: Calcium-activated chloride channel; InterPro: IPR013642 The CLCA family of calcium-activated chloride channels has been identified in many epithelial and endothelial cell types as well as in smooth muscle cells [] and has four or five putative transmembrane regions. Additionally to their role as chloride channels some CLCA proteins function as adhesion molecules and may also have roles as tumour suppressors []. The domain described here is found at the N terminus of CLCAs.
Probab=52.70 E-value=11 Score=40.77 Aligned_cols=132 Identities=25% Similarity=0.435 Sum_probs=77.7
Q ss_pred CcccchhHHHHHHHHHhcccccchhhhhcccceeeeeeecceecCcceeEEEecccccEE-----------EEEeecccc
Q psy17877 1 MISSIALPLLCFIGVIVGLSATDEWYENTGYNKYLLESVPGEVKAGKYFHYSLNYQGPLS-----------LYLTSKNQR 69 (1262)
Q Consensus 1 miss~~lpll~~~g~~~gLSa~~e~y~n~g~~k~lL~sV~GeV~AGnY~yy~Ln~~G~ls-----------L~L~S~nqr 69 (1262)
|-+...+-|+|++-+..|.++..-.+.|-||+.+++--=++.-. +..|. -+|-..-.+
T Consensus 1 ~~~~~~~~~~l~l~l~~~~~~s~v~L~nnGYe~vvIAI~p~VpE-----------d~~lI~~Ik~m~t~AS~~Lf~AT~~ 69 (262)
T PF08434_consen 1 MGSFKSLVLLLVLHLLSGASTSLVKLNNNGYEDVVIAINPSVPE-----------DEKLIDNIKDMFTEASQYLFNATKK 69 (262)
T ss_pred CchhhhhHHHHHHHHhccccccEEEecCCCcccEEEEECCCCCc-----------cHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34444555555555555656666788899999888765444221 11110 011112223
Q ss_pred hhhhhccccc----ccccCCCCCCCCCCCCCCcccccccccceeccCCCCCcceEeecccCCCCcCCCCcccccccccC-
Q psy17877 70 DSYLKQSKDL----WDHKKGSEQPNPNQPGFPKEKHRSSSWLTVVRDRPSDADFYVSTSVEKPTYEPDTYDVQSASCGI- 144 (1262)
Q Consensus 70 dsylkqskdl----wdhkkgseqpnpnqpgfpkekhrssswl~v~~~~~gDADlYVS~s~~kPtyEpD~Yd~QSaTCG~- 144 (1262)
..|+|.-+=| |..+- .+- ......-..||+-|... +|-+.-+-|.+|..-||.
T Consensus 70 R~yf~~V~ILiP~tW~~~~----------~y~----------~~~~es~~~Adv~V~~~--~~~~~d~PyT~q~g~CGe~ 127 (262)
T PF08434_consen 70 RAYFKNVTILIPKTWSDKP----------EYS----------RAKTESYETADVRVASP--NPKYGDEPYTLQYGGCGEP 127 (262)
T ss_pred ceeeeeeEEEeccccCCCc----------ccc----------ccchhhhcCCCEEEeCC--CCCCCCCCceecCCCCCCC
Confidence 3444444433 33221 111 11112246799999874 566777899999999997
Q ss_pred -ceEEcCCCCCCccEEEEecCC
Q psy17877 145 -DVVHIPESFKRPVHISVYGHP 165 (1262)
Q Consensus 145 -DvV~IP~sfkRPV~IgVYGHP 165 (1262)
+.+|+...|-+---...||-+
T Consensus 128 G~yIhltp~fl~~~~~~~yG~~ 149 (262)
T PF08434_consen 128 GEYIHLTPDFLLGDNLSQYGPR 149 (262)
T ss_pred CeeEEechhhhcCCchhhcCCc
Confidence 689999988776655778854
No 8
>PHA02629 A-type inclusion body protein; Provisional
Probab=49.11 E-value=11 Score=33.43 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.4
Q ss_pred hHHHHHhhCCCCcccCCCCCcccc
Q psy17877 211 HSMQLLAACPVGRWGANCTSKCDC 234 (1262)
Q Consensus 211 ~~~~~l~~~p~g~w~anctskcdc 234 (1262)
...++||.|-+|--|..|+|.||-
T Consensus 7 dle~klrd~gng~~gngc~s~c~f 30 (61)
T PHA02629 7 DLEKKLRDGGNGNGGNGCTSSCEF 30 (61)
T ss_pred HHHHHHHccCCCCCCCCccchhHh
Confidence 456899999999999999999985
No 9
>PF05616 Neisseria_TspB: Neisseria meningitidis TspB protein; InterPro: IPR008708 This family consists mainly of Neisseria meningitidis TspB virulence factor proteins.
Probab=19.30 E-value=3.8e+02 Score=31.99 Aligned_cols=41 Identities=24% Similarity=0.343 Sum_probs=22.9
Q ss_pred CCceEEEeecchhh--hhhhhhhhhccccchhhhhHhhhhhhh
Q psy17877 1214 PPATFTLISTTQRD--RQVEKSQESQRHTLTSLAVIGSLFFRF 1254 (1262)
Q Consensus 1214 ppatftlisttqrd--rqveksqesqrhtltslavigslffrf 1254 (1262)
.|-+|.+...+..= ...=.-.+.-|--+..+|.|++.|+-|
T Consensus 454 aPktF~V~G~~~sFSYqPlCdfA~kiRPlVI~laii~AaFivf 496 (502)
T PF05616_consen 454 APKTFSVFGRQYSFSYQPLCDFAEKIRPLVIALAIIMAAFIVF 496 (502)
T ss_pred CCcEEEEcceEEEEehhHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 46678877433221 111122345677777788887776644
No 10
>PF05616 Neisseria_TspB: Neisseria meningitidis TspB protein; InterPro: IPR008708 This family consists mainly of Neisseria meningitidis TspB virulence factor proteins.
Probab=18.40 E-value=4.1e+02 Score=31.78 Aligned_cols=30 Identities=40% Similarity=0.562 Sum_probs=16.0
Q ss_pred CCCCCCCcccCCC---CCCCCCccccccccccc
Q psy17877 1143 FNPTLPPIHINPT---FPPKKNFNVISSQQNFD 1172 (1262)
Q Consensus 1143 mNPnlppihinpt---fppkknfnvissqqnfd 1172 (1262)
.+=++-|.+|-++ -|.-|-|.|...|..|.
T Consensus 436 ~~~tfsp~nif~~sGvCPaPktF~V~G~~~sFS 468 (502)
T PF05616_consen 436 DNVTFSPDNIFPTSGVCPAPKTFSVFGRQYSFS 468 (502)
T ss_pred cccccccccccCCCCCCCCCcEEEEcceEEEEe
Confidence 3334444444332 46667787776555553
Done!