Query psy17877
Match_columns 1262
No_of_seqs 46 out of 48
Neff 1.4
Searched_HMMs 29240
Date Sat Aug 17 01:18:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17877.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17877hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gy5_A Angiopoietin-1 receptor 53.0 4.9 0.00017 42.8 1.8 36 217-254 187-223 (423)
2 3zyj_B Netrin-G1; cell adhesio 49.4 3.5 0.00012 45.0 0.0 35 218-255 386-420 (426)
3 1klo_A Laminin; glycoprotein; 43.2 7 0.00024 36.3 1.0 35 218-252 91-136 (162)
4 2gy5_A Angiopoietin-1 receptor 38.8 13 0.00046 39.4 2.4 33 218-253 279-311 (423)
5 3jqw_A COLH protein, collagena 15.7 2.4E+02 0.0083 25.9 5.8 29 38-66 27-58 (121)
6 1klo_A Laminin; glycoprotein; 12.0 61 0.0021 30.0 0.7 32 219-250 35-78 (162)
7 3h5c_B Vitamin K-dependent pro 11.4 1.4E+02 0.0047 29.2 3.0 30 218-250 29-59 (317)
8 4g9s_B Inhibitor of G-type lys 11.0 7.1E+02 0.024 21.7 7.2 27 38-64 17-45 (111)
9 4aqs_A Laminin subunit beta-1; 10.7 92 0.0032 33.2 1.7 37 218-254 422-467 (525)
10 1lg7_A VSV matrix protein; vir 10.5 25 0.00084 35.5 -2.6 30 146-179 104-133 (182)
No 1
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Probab=53.02 E-value=4.9 Score=42.77 Aligned_cols=36 Identities=39% Similarity=1.013 Sum_probs=29.4
Q ss_pred hhCCCCcccCCCCCccc-cccccCCccccccceeeccCC
Q psy17877 217 AACPVGRWGANCTSKCD-CGEINGNKCHHLTGTCILPST 254 (1262)
Q Consensus 217 ~~~p~g~w~anctskcd-cgeingnkchhltgtcilpst 254 (1262)
..|+.|+||.+|...|. |. ||..|+..+|+|.-+.-
T Consensus 187 c~C~~g~~G~~C~~~C~~C~--~~G~C~~~~g~C~C~~G 223 (423)
T 2gy5_A 187 RRCEAQKWGPECNHLCTACM--NNGVCHEDTGECICPPG 223 (423)
T ss_dssp CSSCTTEESTTSCEECCCCC--TTCEECTTTCCEECCTT
T ss_pred CcCCCCCCCCCCCCCCCCCC--CCCEEECCCCcEeCCCC
Confidence 36999999999999884 65 67789888899987654
No 2
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=49.36 E-value=3.5 Score=45.01 Aligned_cols=35 Identities=31% Similarity=0.589 Sum_probs=0.0
Q ss_pred hCCCCcccCCCCCccccccccCCccccccceeeccCCC
Q psy17877 218 ACPVGRWGANCTSKCDCGEINGNKCHHLTGTCILPSTT 255 (1262)
Q Consensus 218 ~~p~g~w~anctskcdcgeingnkchhltgtcilpstt 255 (1262)
.|+.|++|.+|. +|.|.. |..|+..+|.|.+|-.|
T Consensus 386 ~C~~G~~G~~Ce-~c~C~~--~g~C~~~~Gqc~~~~~~ 420 (426)
T 3zyj_B 386 LCPAAYTGILCE-KLRCEE--AGSCGSDSGQGAPPHGT 420 (426)
T ss_dssp --------------------------------------
T ss_pred cCCCCCcCCCCc-CCCCCC--CCcccCCCCccCCCCCc
Confidence 589999999996 699974 66699999999998754
No 3
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A
Probab=43.24 E-value=7 Score=36.32 Aligned_cols=35 Identities=26% Similarity=0.669 Sum_probs=27.6
Q ss_pred hCCCCcccCCCC-------Ccccccccc----CCccccccceeecc
Q psy17877 218 ACPVGRWGANCT-------SKCDCGEIN----GNKCHHLTGTCILP 252 (1262)
Q Consensus 218 ~~p~g~w~anct-------skcdcgein----gnkchhltgtcilp 252 (1262)
.|+.|+|+..|. ..|+|.... +..|++.+|.|+-.
T Consensus 91 ~C~~Gy~g~~~~~~~~~~C~~C~C~~~Gs~~~~~~Cd~~tG~C~C~ 136 (162)
T 1klo_A 91 RCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQCQCL 136 (162)
T ss_dssp EECTTEEECTTCSSGGGSEEECCCCTTTBGGGCCCCCTTTCCCCBC
T ss_pred cCchhhcCCccccCCCCCCeeccCCCCCccCCCCCCCCCCCEeECC
Confidence 389999999988 678897542 23899999999754
No 4
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Probab=38.83 E-value=13 Score=39.42 Aligned_cols=33 Identities=36% Similarity=1.093 Sum_probs=25.8
Q ss_pred hCCCCcccCCCCCccccccccCCccccccceeeccC
Q psy17877 218 ACPVGRWGANCTSKCDCGEINGNKCHHLTGTCILPS 253 (1262)
Q Consensus 218 ~~p~g~w~anctskcdcgeingnkchhltgtcilps 253 (1262)
.|+.|+||.+|...|.|. ||..|+...| |.-+.
T Consensus 279 ~C~~G~~G~~C~~~C~C~--ngg~C~~~~~-C~C~~ 311 (423)
T 2gy5_A 279 ACHPGFYGPDCKLRCSCN--NGEMCDRFQG-CLCSP 311 (423)
T ss_dssp CCCTTBCSBTTCCBCCCT--TCCEEETTTE-EECCT
T ss_pred ccCCCCcCCcccccccCC--CCCEecCCCc-eECCC
Confidence 588899999898888886 5778888776 77654
No 5
>3jqw_A COLH protein, collagenase; beta-barrel, dual calcium site, cell adhesion; 2.00A {Clostridium histolyticum} SCOP: b.23.2.0 PDB: 3jqx_A
Probab=15.74 E-value=2.4e+02 Score=25.88 Aligned_cols=29 Identities=17% Similarity=0.439 Sum_probs=25.2
Q ss_pred eecceecCcc---eeEEEecccccEEEEEeec
Q psy17877 38 SVPGEVKAGK---YFHYSLNYQGPLSLYLTSK 66 (1262)
Q Consensus 38 sV~GeV~AGn---Y~yy~Ln~~G~lsL~L~S~ 66 (1262)
.|.|.+.... |++|.+...|.|.|.|.+.
T Consensus 27 ~v~G~l~~~dd~D~y~F~V~~~g~v~I~l~~~ 58 (121)
T 3jqw_A 27 PVSGTIENTSDQDYFYFDVITPGEVKIDINKL 58 (121)
T ss_dssp CEEEEECSTTCCEEEEEEESSCEEEEEEEEEC
T ss_pred EEEEEeCCcCCeeEEEEEeCCCCeEEEEEEec
Confidence 4888888654 8999999999999999987
No 6
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A
Probab=12.01 E-value=61 Score=30.04 Aligned_cols=32 Identities=31% Similarity=0.814 Sum_probs=22.0
Q ss_pred CCCCcccCCCC--------Ccccccccc----CCccccccceee
Q psy17877 219 CPVGRWGANCT--------SKCDCGEIN----GNKCHHLTGTCI 250 (1262)
Q Consensus 219 ~p~g~w~anct--------skcdcgein----gnkchhltgtci 250 (1262)
|+.|+|+..|. ..|+|..-. ...|++.+|.|+
T Consensus 35 C~~g~~g~~~~~~~~~~~C~~C~C~~~~~~~~~~~C~~~tG~C~ 78 (162)
T 1klo_A 35 CDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECL 78 (162)
T ss_dssp ECTTEEEETTCTTSSCEEEEECCSTTCBCTTCSCCBCTTTCCBC
T ss_pred CCCCCcCCcccccCCCCCCeeCcCCCCCCcccCCcccCCCCccc
Confidence 77777776554 467885321 137999999997
No 7
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}
Probab=11.36 E-value=1.4e+02 Score=29.17 Aligned_cols=30 Identities=33% Similarity=0.859 Sum_probs=21.3
Q ss_pred hCCCCcccCCCC-CccccccccCCccccccceee
Q psy17877 218 ACPVGRWGANCT-SKCDCGEINGNKCHHLTGTCI 250 (1262)
Q Consensus 218 ~~p~g~w~anct-skcdcgeingnkchhltgtci 250 (1262)
.|+.|+.|.+|. ..-.|..-..+.|+| +|+
T Consensus 29 ~C~~g~~g~~C~~~~~eC~~~~~~~C~~---~C~ 59 (317)
T 3h5c_B 29 TCSPGYEGSNCELAKNECHPERTDGCQH---FCL 59 (317)
T ss_dssp CCSSSCCSSSSCCCSSSCCTTCTTSCSS---EEE
T ss_pred ECCCCCcCCccccCcccCCCCCCCCCcC---ccc
Confidence 489999999997 555565433367887 676
No 8
>4g9s_B Inhibitor of G-type lysozyme, goose-type lysozyme; hydrolase inhibitor, hydrolase-hydrolase inhibitor; HET: FLC; 0.95A {Escherichia coli} PDB: 4dy3_A* 4dxz_A* 4dy5_A
Probab=10.99 E-value=7.1e+02 Score=21.72 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=19.1
Q ss_pred eecceecCcceeEEEeccc--ccEEEEEe
Q psy17877 38 SVPGEVKAGKYFHYSLNYQ--GPLSLYLT 64 (1262)
Q Consensus 38 sV~GeV~AGnY~yy~Ln~~--G~lsL~L~ 64 (1262)
.|.|.|+++.|-.|.|.-. -.|++.|.
T Consensus 17 ~v~G~I~g~~~~~Y~~~a~aGQ~l~v~l~ 45 (111)
T 4g9s_B 17 QYSGEIKGYDYDTYTFYAKKGQKVHVSIS 45 (111)
T ss_dssp EEEEEEETTCCEEEEEEECTTCEEEEEES
T ss_pred EEEEEEeCCCceEEEEEecCCCEEEEEEe
Confidence 5789999999999987643 24445443
No 9
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}
Probab=10.69 E-value=92 Score=33.19 Aligned_cols=37 Identities=27% Similarity=0.633 Sum_probs=26.0
Q ss_pred hCCCCcccCCCCCc-----ccccc----ccCCccccccceeeccCC
Q psy17877 218 ACPVGRWGANCTSK-----CDCGE----INGNKCHHLTGTCILPST 254 (1262)
Q Consensus 218 ~~p~g~w~anctsk-----cdcge----ingnkchhltgtcilpst 254 (1262)
.|+.|+||.+|... |.|.. .++..|+..+|.|+-+..
T Consensus 422 ~C~~Gy~G~~c~~~~~C~~C~C~~~gtc~~~~~Cd~~tg~C~C~~g 467 (525)
T 4aqs_A 422 VCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRL 467 (525)
T ss_dssp EECTTEECCCTTSTTSSEECCCCTTTBCCSSCCBCTTTCCBCBCTT
T ss_pred CCCCCCcCCCCCCCCCCccCCCCCCceecCCCcccCCCCEEECCCC
Confidence 48888888887643 44432 357789999999986543
No 10
>1lg7_A VSV matrix protein; virus matrix, viral protein; 1.96A {Vesicular stomatitis virus} SCOP: d.213.1.1
Probab=10.48 E-value=25 Score=35.53 Aligned_cols=30 Identities=27% Similarity=0.645 Sum_probs=21.4
Q ss_pred eEEcCCCCCCccEEEEecCCCCccceEEEEEEee
Q psy17877 146 VVHIPESFKRPVHISVYGHPAAETSVYILDVVHR 179 (1262)
Q Consensus 146 vV~IP~sfkRPV~IgVYGHPs~e~S~y~L~Vv~~ 179 (1262)
..++||+|.||++||.|- .+-...|.|...
T Consensus 104 m~~v~E~Frrp~~i~~yk----Gtv~l~i~l~d~ 133 (182)
T 1lg7_A 104 MLNVPEHFRRPFNIGLYK----GTVELTMTIYDD 133 (182)
T ss_dssp CCSCCEEEEEEEECSSCE----EEEEEEEEEEEC
T ss_pred ccccchhccceeeccccc----cEEEEEEEEEcc
Confidence 356899999999999883 244555666544
Done!