RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17877
(1262 letters)
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 70.5 bits (172), Expect = 4e-12
Identities = 60/279 (21%), Positives = 121/279 (43%), Gaps = 22/279 (7%)
Query: 883 SSTNFPNIPPIQNFPKLSKDLSFDFNPTLPPLQNINLPPSFNPSFPPMSNFYPTLPPMPS 942
+ T + P + + S D + F+P + S + P +
Sbjct: 1482 AGTPYERSPMVDSGFVGSPDAA-AFSPLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYT 1540
Query: 943 FNLTLPPVPSFNPSFPTMSNFNPTLPPMSNFNPTIPPKENFNPTLPPVQNINPTFPPV-Q 1001
+ P + + P+ S +P + P+ P +++PT P +P++ P
Sbjct: 1541 SPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSP---SYSPTSPSYSPTSPSYSPTSP 1597
Query: 1002 NFNHTLPPMSNFNPTIPPVQNFNSTLPPVQNFNPTLPPVENFNPTLPPMSNFNPTIPPKE 1061
+++ T P S +P+ P S P +++PT P +++PT P S +P+ P
Sbjct: 1598 SYSPTSPSYSATSPSYSPTSPSYSPTSP--SYSPTSP---SYSPTSPSYSPTSPSYSPTS 1652
Query: 1062 -NFNPTLPPVQNINPTFPPV-QNFNHTLPPMS----NFNPTLPPVQNFNPTFPP-VKNIN 1114
+++PT P +P++ P +++ T P S +++PT P +P++ P + +
Sbjct: 1653 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1712
Query: 1115 PTFPPVQNFNPTFPPI-QNFNPT----LPPVPNFNPTLP 1148
PT P +P++ P +++PT P P+++PT P
Sbjct: 1713 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1751
Score = 48.5 bits (115), Expect = 1e-05
Identities = 62/287 (21%), Positives = 108/287 (37%), Gaps = 73/287 (25%)
Query: 934 YPTLPPMPSFNLTLPPVPSFNPSFPTMSNFNPTLPPMSNFNPTIPPKENFNPTLPPVQNI 993
Y P + S + P +F+P S P + P
Sbjct: 1486 YERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLLGAASP----YKGVQSPGYTS 1541
Query: 994 NPTFPPVQNFNHTLPPMSNFNPTIPPVQNFNSTLPPVQNFNPTLPPVENFNPTLPPMSNF 1053
+ + T P S +P + + P +++PT P +++PT P ++
Sbjct: 1542 PFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSP---SYSPTSP---SYSPTSP---SY 1592
Query: 1054 NPTIPPKENFNPTLPPVQNINPTFPPVQNFNHTLPPMSNFNPTLPPVQNFNPTFPPVKNI 1113
+PT P +++PT P +P++ P P ++PT P +++PT P
Sbjct: 1593 SPTSP---SYSPTSPSYSATSPSYSPTSPSYSPTSPS--YSPTSP---SYSPTSP----- 1639
Query: 1114 NPTFPPVQNFNPTFPPIQNFNPTLPPVPNFNPTLPPIHINPTFPPKKNFNVISSQQNFDL 1173
+++PT P +++PT P+++PT P +PT P
Sbjct: 1640 --------SYSPTSP---SYSPT---SPSYSPTSP--SYSPTSP---------------- 1667
Query: 1174 SVSSAFPSNSNWLNNMTPTLPSLSLTTPTVFPL-PSRTPTSPPATFT 1219
+ +PT PS S T+P+ P PS +PTSP + T
Sbjct: 1668 --------------SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1700
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 67.0 bits (163), Expect = 3e-11
Identities = 58/313 (18%), Positives = 113/313 (36%), Gaps = 33/313 (10%)
Query: 909 PTLPPLQNINLPPSFNPSFPPMSNFYPTLPPMPSFNLTLPPVPSFNPSFPTMSNFNPTLP 968
+L Y + + +L + F+P + SN +
Sbjct: 1448 ESLVKYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSN-DAMAG 1506
Query: 969 PMSNFNPTIPPKENFNPTLPPVQNINPTFPPVQNFNHTLPPMSNFNPTIPPVQNFNSTLP 1028
+ + + +P F F+PT P ++ T P
Sbjct: 1507 GFTAYGGADYGEATSPFGAYGEAPTSPGFG---------VSSPGFSPTSP---TYSPTSP 1554
Query: 1029 PVQNFNPTLPPVENFNPTLPPMSNFNPT-IPPKENFNPTLPPVQNINPTFPPV-QNFNHT 1086
++PT P +++PT P S +P+ P +++PT P +P++ P +++ T
Sbjct: 1555 ---AYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1608
Query: 1087 LPPMSNFNPTLPPVQ-NFNPTFPPVKNINPTFPPVQNFNPTFPPIQN-FNPTLPPVPNFN 1144
P S +P+ P +++PT P +P++ P +P++ P ++PT P +
Sbjct: 1609 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT---SPSYSPTSPSYSPTSPAYSPTS 1665
Query: 1145 PTLPPIHINPTFPPKKNFNVISSQQNFDLSVSSAFPSNSNWLNNMTPTLPSLSLTTPTVF 1204
P+ P +P++ P +S S P+ S + +PT P S +P
Sbjct: 1666 PSYSP--TSPSYSPTSPSYSPTSPSYSPTS-----PNYSPTSPSYSPTSPGYSPGSPAYS 1718
Query: 1205 PLPSRTPTSPPAT 1217
P +
Sbjct: 1719 PKQDEQKHNENEN 1731
Score = 66.3 bits (161), Expect = 7e-11
Identities = 58/246 (23%), Positives = 98/246 (39%), Gaps = 31/246 (12%)
Query: 920 PPSFNPSFPPMSNFYPTLPPMPSFNLTLPPVPSFNPSFPTMSNFNPTLPPMS-NFNPTIP 978
+ + P + P P F P F+P+ PT S +P P S +++PT P
Sbjct: 1513 GADYGEATSPFGAYGEA-PTSPGFG---VSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSP 1568
Query: 979 PKENFNPTLPPVQNINPTFPPVQNFNH-TLPPMSNFNPTIPPVQNFNSTLPPVQNFNPTL 1037
+++PT P +P++ P T P S +P+ P S P +++PT
Sbjct: 1569 ---SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP--SYSPTS 1623
Query: 1038 PPVENFNPTLPPMSNFNPTIPPKENFNPTLPPVQNINPTFPPVQNFNHTLPPMSNFNPTL 1097
P +++PT P S +P+ P P +PT P P +++PT
Sbjct: 1624 P---SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--SPTSPAYS------PTSPSYSPTS 1672
Query: 1098 PPVQNFNPTFPPVKNINPTFPPVQNFNPTFPPIQNFNPT----LPPVPNFNPTLPPIHIN 1153
P +P++ P P N++PT P +++PT P P ++P N
Sbjct: 1673 PSYSPTSPSYSPTSPSY--SPTSPNYSPTSP---SYSPTSPGYSPGSPAYSPKQDEQKHN 1727
Query: 1154 PTFPPK 1159
+
Sbjct: 1728 ENENSR 1733
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.9 bits (152), Expect = 6e-10
Identities = 92/637 (14%), Positives = 182/637 (28%), Gaps = 167/637 (26%)
Query: 352 TATEEWPYTLPKLTTARPVFNEVGIKKDVPPPGLDWPYTLPELTTPRPVLNGEIVNKVLP 411
T E Y + VF + + D P+ +L+ E ++ ++
Sbjct: 9 FETGEHQYQYKDIL---SVFED-AFVDN-----FDCKDVQDM---PKSILSKEEIDHII- 55
Query: 412 QVEVDVPNSFTTRKSPVDDLIIREIAPIVDAIPSKIPKFEMGITSRTHSPIFNTDIIDKN 471
S + + + ++ + F +++ N
Sbjct: 56 -------------MSKDAVSGTLRLFWTLLSKQEEMVQ------------KFVEEVLRIN 90
Query: 472 LSPIVDSISKIATEHPTTTKTIPYQETTPRPFSGAPSYTPTD-SNPHVIPTEIKTIFK-- 528
++ I + + T Y E R ++ + + S +++
Sbjct: 91 YKFLMSPIKTEQRQ--PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY-LKLRQALLEL 147
Query: 529 -----------GGPTVSEAATTGTSIL-----NGDSIAKSISNN---LNAFAKSDS---- 565
G +G + + + + LN +S
Sbjct: 148 RPAKNVLIDGVLG--------SGKTWVALDVCLSYKVQCKMDFKIFWLN-LKNCNSPETV 198
Query: 566 VTVQATLPTLTMPTLGVSFNFPVISSTPGTKTKVIDKLN--IMTSDLEKSLKSVV----- 618
+ + L P + S+ + +L + + E L +V
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHS--SNIKLRIHSIQAELRRLLKSKPYENCL--LVLLNVQ 254
Query: 619 -SSVMNELN-TSNILPTTTPRNSFYNVINSLDKTNDNARFDDE----LTSRQ-RDIHSKI 671
+ N N + IL TT R V + L D LT + + + K
Sbjct: 255 NAKAWNAFNLSCKILLTT--RFK--QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 672 KNIGEITFPTLPEVRTNEFLNPAALTTSSVPPS-RDKPTSLPPIITDRPLDNPHLPNILT 730
+ P EV T NP L S + S RD + + ++ L I+
Sbjct: 311 LDCRPQDLP--REVLT---TNPRRL--SIIAESIRDGLATWDNW---KHVNCDKLTTIIE 360
Query: 731 HS----TPGESPEPY-----------LPTSTLSSLGNIARDSTPNVIAKEFSSRDKPTSL 775
S P E + + +PT LS + S V+ + SL
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY----SL 416
Query: 776 PPIITDRPLDNPHLPNI-LTYSTPGESPEPHLPTSTLSSLGNIARDLTPNVIAKE----- 829
+ +P+I L E+ E L S + NI + + +
Sbjct: 417 --VEKQPKESTISIPSIYLELKVKLEN-EYALHRSIVDHY-NIPKTFDSDDLIPPYLDQY 472
Query: 830 -FNTIASSGLPEYHVES-----KPTVTP---IDL------IITQSTSPTERQTSSHITST 874
++ I +H+++ + T+ +D I ST+ + +
Sbjct: 473 FYSHIG------HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN---- 522
Query: 875 TLTKVSEYSSTNFPNIPPIQNFPKLSKDLSFDFNPTL 911
TL ++ Y N P + +L + DF P +
Sbjct: 523 TLQQLKFYKPYICDNDP---KYERLVNAI-LDFLPKI 555
Score = 36.0 bits (82), Expect = 0.096
Identities = 23/169 (13%), Positives = 46/169 (27%), Gaps = 32/169 (18%)
Query: 751 GNIARDSTPNVIAKEFSSRDKPTSLPPIITDRPLDNPHLPNILTYSTPGESPEPHLPTST 810
+I + F +D I++ +D +I+ S L +
Sbjct: 19 KDILSVFEDAFV-DNFDCKDVQDMPKSILSKEEID-----HIIMSKDA-VSGTLRLFWTL 71
Query: 811 LSSLGNIARDLTPNVIAKEFNTIASSGLPEYHVESKPTVTPIDLIITQSTSPTERQTSSH 870
LS + + V+ + + S E + Q + T
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSP----IKTEQR-----------QPSMMTRMYIEQR 116
Query: 871 ITSTTLTKVSEYSSTNFPNIPPIQNFPKLSKDLSFDFNPTLPPLQNINL 919
++ N + P KL + L L P +N+ +
Sbjct: 117 --DRLYNDNQVFAKYNVSRLQPYL---KLRQALL-----ELRPAKNVLI 155
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.1 bits (145), Expect = 5e-09
Identities = 77/454 (16%), Positives = 125/454 (27%), Gaps = 130/454 (28%)
Query: 613 SLKSVVSSVMNELNTSNILPT------TTPRNSFYNVINSLDKTNDNARFDD------EL 660
S + + S L ++PT + + F L + + DD EL
Sbjct: 5 STRPLTLSH-GSLEHVLLVPTASFFIASQLQEQF---NKILPEPTEGFAADDEPTTPAEL 60
Query: 661 TSR------QRDIHSKIKNIGEITFPTLPEVRTNEFLNPA---ALTTSSVPPSRDKPTSL 711
+ SK+ ++ L E +L AL + +
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENC-YLEGNDIHALAAKLLQENDTTLVKT 119
Query: 712 PPII---------TDRPLDNPHLPNILTHSTPGE-----------SPEPYLPTSTLSSLG 751
+I RP D + G + + Y L L
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE--ELRDLY 177
Query: 752 NIARDSTPNVIAKEFSSRDKPTSLPPIITDRPLDNPHLP---NILTY-STPGESPEPH-- 805
T +V+ + T L +I NIL + P +P+
Sbjct: 178 Q-----TYHVLVGDLIKFSAET-LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231
Query: 806 ------LPTSTLSSLGNIAR-----DLTPNVIAKEFNTIASSGLPEYHVESKPTVTPIDL 854
P + L + TP E + S+ VT +
Sbjct: 232 LSIPISCPLIGVIQLAHYVVTAKLLGFTP----GELRSYLKGAT----GHSQGLVTA--V 281
Query: 855 IITQSTSPTERQTSSHITSTTLTKVSEYSSTNFPN--IPP--IQNF---------PKLS- 900
I ++ S S T L + +PN +PP +++ P LS
Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI 341
Query: 901 KDLSFD--------FNPTLPPLQNI-----NLPPSFNPSFPPMSNFYPTLPPMPSFNLTL 947
+L+ + N LP + + N + S PP S + NLTL
Sbjct: 342 SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQS--------LYGLNLTL 393
Query: 948 -----PP------VPSFNPSFPTMSN-FNP-TLP 968
P +P F+ SN F P P
Sbjct: 394 RKAKAPSGLDQSRIP-FSERKLKFSNRFLPVASP 426
Score = 55.8 bits (134), Expect = 9e-08
Identities = 102/636 (16%), Positives = 183/636 (28%), Gaps = 255/636 (40%)
Query: 58 PLSLYLTSKNQRDSYLKQSKDLWDHKKGSEQPNPNQPGFPKEKHRSSSWLTVVRDRPSD- 116
P + + + ++ + K P P + GF + D P+
Sbjct: 23 PTASFFIASQLQEQFNKI------------LPEPTE-GFAAD------------DEPTTP 57
Query: 117 ----ADF--YVSTSVEK---PTYEP----------DTY----DVQSASCGIDVVHIPESF 153
F YVS+ VE ++ + Y D+ + + + +
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLV 117
Query: 154 KRPVHISVY-------------GHPAAETSVYILDVVHREEPFDSEI--------NLEYY 192
K I Y +A + V +++ N + Y
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSA-----LFRAVGEGN---AQLVAIFGGQGNTDDY 169
Query: 193 LSEKKNSSQSIYCS-------LVSPHSMQL--LAACP------------VGRWGANCTSK 231
E + +Y + L+ + L L + W N ++
Sbjct: 170 FEE----LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT 225
Query: 232 CD----------CGEINGNKCHHLTGTCILPSTTSTTTETPTPTRIE---TTTLAPNTVA 278
D C I + H T TP R T + V
Sbjct: 226 PDKDYLLSIPISCPLIGVIQLAHYVVTA------KLLGFTPGELRSYLKGATGHSQGLVT 279
Query: 279 AVTTTTFATSKEPLKPNTE----------------AP-TTLPTIPSVLTKLEDTLDVFNP 321
AV S E + P T+LP PS+L ED+L+
Sbjct: 280 AVAIAE-TDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP--PSIL---EDSLEN--- 330
Query: 322 IQNFDEMSPIIPVRGVSTYTI---------SLPT-----I-----PSN-----PTATEEW 357
N SP++ + ++ + LP I N P
Sbjct: 331 --NEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGP------ 382
Query: 358 PYTLPKLTTARPVFNEVGIKKDVPPPGLD---WPYTLPELTTPRPVLNGEIVNKVLPQVE 414
P +L L ++K P GLD P+ + R + + N+ LP
Sbjct: 383 PQSLYGLNLT--------LRKAKAPSGLDQSRIPF------SERKL---KFSNRFLP--- 422
Query: 415 VDVPNSF-TTRKSPVDDLIIREIAPIVDAIPSKIPKFEMGITSRTHSPIFNT----DI-- 467
V P F + P DLI +++ + +K ++ I P+++T D+
Sbjct: 423 VASP--FHSHLLVPASDLINKDLVKNNVSFNAK----DIQI------PVYDTFDGSDLRV 470
Query: 468 IDKNLSP-IVDSISKIATEHPTTTKTIPYQETTPRPFSGAPSYTPTDSNPHVI---PTEI 523
+ ++S IVD I + ++ TT + T H++ P
Sbjct: 471 LSGSISERIVDCI---------IRLPVKWETTT--------QFKAT----HILDFGPGGA 509
Query: 524 KTIFKGGPTVSEAAT-TGTSILNGDSIAKSISNNLN 558
+ G TG ++ +A ++ N +
Sbjct: 510 SGL---GVLTHRNKDGTGVRVI----VAGTLDINPD 538
Score = 53.1 bits (127), Expect = 6e-07
Identities = 96/575 (16%), Positives = 156/575 (27%), Gaps = 205/575 (35%)
Query: 330 PIIPVRGVSTYTISLPTIPSNPTATEEWPYTLPKLTTARPVFNEVGIKKDVPPP-----G 384
P+ G + + +PT + + + FN K +P P
Sbjct: 8 PLTLSHGSLEHVLLVPT--------ASFFI----ASQLQEQFN-----KILPEPTEGFAA 50
Query: 385 LDWPYTLPELT------TPRPVLNG------EIVNKVLPQVEV------DV-------PN 419
D P T EL V +++N L + E D+
Sbjct: 51 DDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQ 110
Query: 420 SFTTRKSPVDDLI-----IREIA--PIVDAIPSKIPK------------F---------- 450
T +LI R +A P S + + F
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF 170
Query: 451 -EMGITSRTHSPIFNTDIID------KNLSPIVDSISKIAT---------EHPTTTKTIP 494
E+ +T+ D+I L K+ T E+P+ T
Sbjct: 171 EELRDLYQTYHV-LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD 229
Query: 495 YQETTPR--PFSG---APSYTPTDSNPHVIPTEIKTIFKGGPTVSE---------AATTG 540
Y + P P G Y T P E+++ KG S+ +
Sbjct: 230 YLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW 289
Query: 541 TSILNGDSIAKSIS---------------NNLNAFAKSDSVTVQATLPTLTMPTLGVSFN 585
S S+ K+I+ +L DS+ +P+ P L +S
Sbjct: 290 ESFF--VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS---PMLSIS-- 342
Query: 586 FPVISSTPGTKTKVIDKLNI---MTSDLEKSLKS-----VVS----------------SV 621
+ T ++K N +E SL + VVS
Sbjct: 343 ----NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA 398
Query: 622 MNELNTSNI-------------LPTTTPRNSFYNVINSLDKTNDNARFDDELTSRQRDIH 668
+ L+ S I LP +P +S L +D + +L +
Sbjct: 399 PSGLDQSRIPFSERKLKFSNRFLPVASPFHSHL-----LVPASD--LINKDLVKNNVSFN 451
Query: 669 SKIKNIGEITFPTLPEV-RTNEFLNPAALTTSSVPPSRDKPTSLPPIITDRPLDNPHLPN 727
+K +I P V T + + L+ S + I P+
Sbjct: 452 AK-----DIQIP----VYDTFDGSDLRVLSGSISE-------RIVDCIIRLPVKWETTTQ 495
Query: 728 I-LTHST---PGESPEPYLPTSTLSSLGNIARDST 758
TH PG S L L + +D T
Sbjct: 496 FKATHILDFGPGG-------ASGLGVLTHRNKDGT 523
Score = 40.4 bits (94), Expect = 0.005
Identities = 54/239 (22%), Positives = 81/239 (33%), Gaps = 76/239 (31%)
Query: 2 ISSIALPLLCFIGV-------IVGLSAT---DEWYENTGYNKYLLESVPG---------- 41
A+ +L FIGV L + D N G +L S+
Sbjct: 295 SVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML-SISNLTQEQVQDYV 353
Query: 42 -----EVKAGKYFHYSL-NYQG---------PLSLY-LTS---KNQRDSYLKQSKDLWDH 82
+ AGK SL N G P SLY L K + S L QS+ +
Sbjct: 354 NKTNSHLPAGKQVEISLVN--GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE 411
Query: 83 KK--GSEQPNP-NQPGFPKEKHRSSSWLT-----VVRDRPSDADFYVSTSVEKPTYEPDT 134
+K S + P P F H S L + +D + + + ++ P Y DT
Sbjct: 412 RKLKFSNRFLPVASP-F----H--SHLLVPASDLINKDLVKNNVSFNAKDIQIPVY--DT 462
Query: 135 Y---DVQSASCGIDVVHIPESFKRPV-----------HISVYGHPAAETSVYILDVVHR 179
+ D++ S I + + PV HI +G P + + +L HR
Sbjct: 463 FDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG-PGGASGLGVL--THR 518
Score = 35.0 bits (80), Expect = 0.19
Identities = 20/124 (16%), Positives = 32/124 (25%), Gaps = 53/124 (42%)
Query: 1112 NINPTFPPVQNFNPTFPP-----IQNFNPTLPPVPNFNPTLPPIHINPTFPPKKNFNVIS 1166
N + F +++ T+ I+ TL + + F + N++
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIR-----TTLDAEKVFT--QGLNILE 217
Query: 1167 SQQNFDLSVSSAFPSNSNWLNNMTPTLPSLSLTTPTVFPLPSRTP-----TSPPATFTLI 1221
WL N PS TP S P + LI
Sbjct: 218 ------------------WLEN------------------PSNTPDKDYLLSIPISCPLI 241
Query: 1222 STTQ 1225
Q
Sbjct: 242 GVIQ 245
Score = 30.4 bits (68), Expect = 4.9
Identities = 48/295 (16%), Positives = 83/295 (28%), Gaps = 120/295 (40%)
Query: 452 MGITSRTHSPIFNT--DIIDKNLSPIVD-SISKIATEHPTTTKTIPYQETTPRPFSGAPS 508
MG+ S + D + SI I +P TI F G
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNP-VNLTI--------HFGGEKG 1681
Query: 509 ------Y------TPTDSNPHVIPTEIKTIFKGGPTVSEAATTGTSILNGD--------- 547
Y T D + + IFK ++E +T + +
Sbjct: 1682 KRIRENYSAMIFETIVDGK-----LKTEKIFKE---INEHST--SYTFRSEKGLLSATQF 1731
Query: 548 --------SIA-------KSISNNLNAFA------------KSDSVTVQATLPTL----- 575
A K + FA +D +++++ + +
Sbjct: 1732 TQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGM 1791
Query: 576 ----TMP--TLGVSFNFPVISSTPGTKTKVIDKLNIMTSDLEKSLKSVVSSVMNELNTSN 629
+P LG S N+ +I+ PG +++L+ VV V T
Sbjct: 1792 TMQVAVPRDELGRS-NYGMIAINPGRVAASFS---------QEALQYVVERVGKR--TGW 1839
Query: 630 ILPTTTPRNSFYN------VI----NSLDKTNDNARFDDELTSRQRDIHSKIKNI 674
++ N YN V +LD +T+ I K++ I
Sbjct: 1840 LV---EIVN--YNVENQQYVAAGDLRALDT----------VTNVLNFI--KLQKI 1877
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 47.1 bits (111), Expect = 4e-05
Identities = 39/235 (16%), Positives = 55/235 (23%), Gaps = 10/235 (4%)
Query: 994 NPTFPPVQNFNHTLPPMSNFNPTIPPVQNFNSTLPPVQNFNPTLPPVENFNPTLPPMSNF 1053
QN P P P S +P + P
Sbjct: 11 QAQLQYGQNATPLQQPAQFMPPQDPAAAGM-SYGQMGMPPQGAVPSMGQQQFLTPAQEQL 69
Query: 1054 NPTIPPKENFNPTLPPVQNINPTFPPVQNFNHTLPPMSNFNPTLPPVQNFNPTFPPVKNI 1113
+ I T P V + P + T Q P
Sbjct: 70 HQQIDQ-----ATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQP 124
Query: 1114 NPTFPPVQNFNPTFPPIQNFNPTLPPVPNFNPTLPPIHINPTFPPKKNFNVISSQQNFDL 1173
+ PI PP+ + PP+ I P + +S
Sbjct: 125 SAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIRS 184
Query: 1174 SVSSAFPSNSNWLNNMTPTLPSLSLTTPTVFPLPSRTPTSPPATFTLISTTQRDR 1228
++ +A P NS+ L LP L L P LI +R R
Sbjct: 185 TL-NAVPKNSSLLKKS--KLP-FGLVIRPYQHLYDDIDPPPLNEDGLIVRCRRCR 235
Score = 45.2 bits (106), Expect = 1e-04
Identities = 27/194 (13%), Positives = 52/194 (26%), Gaps = 13/194 (6%)
Query: 930 MSNFYPTLPPMPSFNLTLPPVPSFNPSFPTMSNFNPTLPPMSNFNPTIPPKENFNPTLPP 989
MS+ + P P P+ M +P MS +PP +P
Sbjct: 1 MSHHKKRVYPQAQLQYGQNATPLQQPA-QFMPPQDPAAAGMSYGQMGMPP----QGAVPS 55
Query: 990 VQNINPTFPPVQNFNHTLPPMSNFNPTIPPVQNFNSTLPPVQNFNPTLPPVENFNPTLPP 1049
+ P + + + + + + + P+ + N + P P
Sbjct: 56 MGQQQFLTPAQEQLHQQIDQAT------TSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPL 109
Query: 1050 MSNFNPTIPPKENFNPTLPPVQNINPTFP-PVQNFNHTLPPMSNFNPTLPP-VQNFNPTF 1107
P P P+ PP+++ PP V
Sbjct: 110 QQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERML 169
Query: 1108 PPVKNINPTFPPVQ 1121
P + N + ++
Sbjct: 170 VPSELSNASPDYIR 183
Score = 45.2 bits (106), Expect = 2e-04
Identities = 25/178 (14%), Positives = 46/178 (25%), Gaps = 7/178 (3%)
Query: 964 NPTLPPMSNFNPTIPPKENFNPTLPPVQNINPTFPPVQNFNHTLPPMSNFNPTIPPVQNF 1023
L N P P + P P ++ + P M P +
Sbjct: 11 QAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAV-PSMGQQQFLTPAQEQL 69
Query: 1024 NSTLPPVQNFNPTLPPVENFNPTLPPMSNFNPTIPPKENFNPTLPPVQNINPTFPPVQNF 1083
+ + + + P + P + P +P T Q P
Sbjct: 70 HQQIDQATTSMNDMHL--HNVPLVDPNAYMQPQVPV---QMGTPLQQQQQPMAAPAYGQP 124
Query: 1084 NHTLPPMSNFNPTLPPVQNFNPTFPPVKNINPTFPP-VQNFNPTFPPIQNFNPTLPPV 1140
+ + L P+ PP+ ++ PP V P + N + +
Sbjct: 125 SAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYI 182
Score = 41.3 bits (96), Expect = 0.002
Identities = 23/182 (12%), Positives = 45/182 (24%), Gaps = 3/182 (1%)
Query: 891 PPIQNFPKLSKDLSFDFNPTLPPLQNINLPPSFNPSFPPMSNFYPTLPPMPSFNLTLPPV 950
+ +P+ + P P Q +PP + P ++
Sbjct: 4 HKKRVYPQAQLQYGQNATPLQQPAQF--MPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQF 61
Query: 951 PSFNPSFPTMSNFNPTLPPMSNFNPTIPPKENFNPTLPPVQNINPTFPPVQNFNHTLPPM 1010
+ T +P + P V T Q P
Sbjct: 62 LTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAY 121
Query: 1011 SNFNPTIPPVQNFNSTLPPVQNFNPTLPPVENFNPTLPPMS-NFNPTIPPKENFNPTLPP 1069
+ + + L P+ PP+ + PP+ + P E N +
Sbjct: 122 GQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDY 181
Query: 1070 VQ 1071
++
Sbjct: 182 IR 183
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 43.5 bits (102), Expect = 3e-04
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 2/35 (5%)
Query: 218 ACPVGRWGANCTSKCDCGE--INGNKCHHLTGTCI 250
AC + +G C +C E + C C
Sbjct: 232 ACELHTFGRTCKERCSGQEGCKSYVFCLPDPYGCS 266
Score = 42.8 bits (100), Expect = 6e-04
Identities = 12/32 (37%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 219 CPVGRWGANCTSKCDCGEINGNKCHHLTGTCI 250
C +WG C C N CH TG CI
Sbjct: 189 CEAQKWGPECNHLCTACM-NNGVCHEDTGECI 219
Score = 37.4 bits (86), Expect = 0.032
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 218 ACPVGRWGANCTSKCDCGEINGNKCHHLTG-TC 249
AC G +G +C +C C NG C G C
Sbjct: 279 ACHPGFYGPDCKLRCSCN--NGEMCDRFQGCLC 309
Score = 29.7 bits (66), Expect = 6.9
Identities = 10/67 (14%), Positives = 16/67 (23%), Gaps = 14/67 (20%)
Query: 219 CPVGRWGANCTSKCD-------CGEINGNKCHHLTGTCI-------LPSTTSTTTETPTP 264
C G G C + + + + I LP+ T P
Sbjct: 309 CSPGWQGLQCEREGIPRMTPKIVDLPDHIEVNSGKFNPICKASGWPLPTNEEMTLVKPDG 368
Query: 265 TRIETTT 271
T +
Sbjct: 369 TVLHPKD 375
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG
MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3
b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A*
2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*
Length = 559
Score = 38.9 bits (91), Expect = 0.011
Identities = 25/170 (14%), Positives = 43/170 (25%), Gaps = 28/170 (16%)
Query: 964 NPTLPPMSNFNPTIPPKENFNPTLPPVQNIN-PTFPPVQNFNHTLPPMSNFNPTIPPVQN 1022
P P P + + + PV + P V+ ++TLP + T V
Sbjct: 315 APGGLPTDEGTPPVDHQCLDTLDVRPVVPRSVPVNSFVKRPDNTLPVALDLTGTPLFVWK 374
Query: 1023 FNSTLPPVQNFNPTLPPVENFNPTLPPMSNFNPTIPPKENFNPTLPPVQNINPTFPPVQN 1082
N + V P + + N + P N + I +
Sbjct: 375 VNGSDINVDWGKPIIDYILTGNTSYPVSDN------IVQVDAVDQWTYWLIENDPEGPFS 428
Query: 1083 FNH--------------------TLPPMSNFNPTLPPVQNFNPTFPPVKN 1112
H F+P + N PP ++
Sbjct: 429 LPHPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLA-RLNGDNPPRRD 477
Score = 38.5 bits (90), Expect = 0.015
Identities = 21/161 (13%), Positives = 42/161 (26%), Gaps = 37/161 (22%)
Query: 1035 PTLPPVENFNPTLPPMSNFNPTIPPKENFNPTLPPVQNINPTFPPVQNFNHTLPPMSNF- 1093
PT + + P +P N + N P + + ++
Sbjct: 320 PTDEGTPPVDHQCLDTLDVRPVVPRSVPVNSFVKRPDNTLPVALDLTGTPLFVWKVNGSD 379
Query: 1094 ------NPTLPPVQNFNPTFPPVKNINPTFPPVQNFNPTFPPIQNFNPTLPPVP------ 1141
P + + N ++P NI T+ I+N +P
Sbjct: 380 INVDWGKPIIDYILTGNTSYPVSDNIVQVDA---VDQWTYWLIENDPEGPFSLPHPMHLH 436
Query: 1142 ---------------------NFNPTLPPIHINPTFPPKKN 1161
F+P + +N PP+++
Sbjct: 437 GHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRRD 477
Score = 34.3 bits (79), Expect = 0.27
Identities = 18/102 (17%), Positives = 30/102 (29%), Gaps = 1/102 (0%)
Query: 1044 NPTLPPMSNFNPTIPPKENFNPTLPPVQNIN-PTFPPVQNFNHTLPPMSNFNPTLPPVQN 1102
P P P + + + PV + P V+ ++TLP + T V
Sbjct: 315 APGGLPTDEGTPPVDHQCLDTLDVRPVVPRSVPVNSFVKRPDNTLPVALDLTGTPLFVWK 374
Query: 1103 FNPTFPPVKNINPTFPPVQNFNPTFPPIQNFNPTLPPVPNFN 1144
N + V P + N ++P N
Sbjct: 375 VNGSDINVDWGKPIIDYILTGNTSYPVSDNIVQVDAVDQWTY 416
Score = 32.3 bits (74), Expect = 1.1
Identities = 15/128 (11%), Positives = 28/128 (21%), Gaps = 13/128 (10%)
Query: 930 MSNFYPTLPPMPSFNLTL------PPVPSFNPSFPTMSNFNPTLPPMSNFNPTIPPKENF 983
F S N P P+ + + P +P
Sbjct: 289 NVTFGGQAACGGSLNPHPAAIFHYAGAPGGLPTDEGTPPVDHQCLDTLDVRPVVPRSVPV 348
Query: 984 NPTLPPVQNINPTFPPVQNFNHTLPPMSNF-------NPTIPPVQNFNSTLPPVQNFNPT 1036
N + N P + + ++ P I + N++ P N
Sbjct: 349 NSFVKRPDNTLPVALDLTGTPLFVWKVNGSDINVDWGKPIIDYILTGNTSYPVSDNIVQV 408
Query: 1037 LPPVENFN 1044
+
Sbjct: 409 DAVDQWTY 416
Score = 32.3 bits (74), Expect = 1.1
Identities = 25/167 (14%), Positives = 42/167 (25%), Gaps = 22/167 (13%)
Query: 924 NPSFPPMSNFYPTLPPMPSFNLTLPP-VPSFNPSFPTMSNFNPTLPPMSNFNPTIPPKEN 982
P P P + L + P VP P + + TLP + T
Sbjct: 315 APGGLPTDEGTPPVDHQCLDTLDVRPVVPRSVPVNSFVKRPDNTLPVALDLTGTPLFVWK 374
Query: 983 FNPTLPPVQNINPTFPPVQNFNHTLPPMSNFNPTIPPVQNFNSTLPPVQNFNPTLPPV-- 1040
N + V P + N + P N + T ++N +
Sbjct: 375 VNGSDINVDWGKPIIDYILTGNTSYPVSDN---IVQVDAVDQWTYWLIENDPEGPFSLPH 431
Query: 1041 ---------------ENFNPTLPPMSNFNPTIPPKENFNPTLPPVQN 1072
+ F+P + N PP ++
Sbjct: 432 PMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLA-RLNGDNPPRRD 477
Score = 30.4 bits (69), Expect = 4.4
Identities = 14/108 (12%), Positives = 29/108 (26%), Gaps = 1/108 (0%)
Query: 1064 NPTLPPVQNINPTFPPVQNFNHTLPPMSNFN-PTLPPVQNFNPTFPPVKNINPTFPPVQN 1122
P P P + P+ + P V+ + T P ++ T V
Sbjct: 315 APGGLPTDEGTPPVDHQCLDTLDVRPVVPRSVPVNSFVKRPDNTLPVALDLTGTPLFVWK 374
Query: 1123 FNPTFPPIQNFNPTLPPVPNFNPTLPPIHINPTFPPKKNFNVISSQQN 1170
N + + P + + N + P + + +
Sbjct: 375 VNGSDINVDWGKPIIDYILTGNTSYPVSDNIVQVDAVDQWTYWLIEND 422
>1rh7_A Relmbeta, resistin-like beta; hormone, glucose uptake,
resistin/FIZZ family, structural genomics, PSI, protein
structure initiative; HET: P6G; 3.11A {Mus musculus}
SCOP: g.77.1.1
Length = 81
Score = 34.0 bits (77), Expect = 0.032
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 182 PFDSEINLEYYLSEKKNSSQSIYCSLVSPHSMQLLAACPVGRWGANCTSKCDCGE---IN 238
F+S ++ + + ++I C+ V+ S LA+CP G C CG N
Sbjct: 2 SFESLVDQRIKEALSRQEPKTISCTSVT--SSGRLASCPAGMVVTGCACGYGCGSWDIRN 59
Query: 239 GNKCH 243
GN CH
Sbjct: 60 GNTCH 64
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 37.4 bits (86), Expect = 0.033
Identities = 5/32 (15%), Positives = 9/32 (28%), Gaps = 2/32 (6%)
Query: 219 CPVGRWGANCTSKCDCGEINGNKCHHLTGTCI 250
C + + +C G G C+
Sbjct: 473 CSEEDYRPSQQDECSPR--EGQPVCSQRGECL 502
Score = 32.8 bits (74), Expect = 0.94
Identities = 8/41 (19%), Positives = 12/41 (29%), Gaps = 9/41 (21%)
Query: 219 CPVGRWGANCTSKCDCGE-----INGNKCHH----LTGTCI 250
C +G C+C + G C G C+
Sbjct: 508 CHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSCGDCL 548
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET: NAG
BMA MAN; 1.67A {Botrytis aclada}
Length = 580
Score = 36.7 bits (85), Expect = 0.048
Identities = 25/163 (15%), Positives = 42/163 (25%), Gaps = 29/163 (17%)
Query: 964 NPTLPPMSNFNPTIPPKENFNPTLPPVQNINPTFPPVQNFNHTLPPMSNFNPTIPPVQNF 1023
+ P P ++ +L P ++ + + + + F TI
Sbjct: 353 SIANPTSVGTTPRGTCEDEPVASLVPHLALDVGGYSLVDEQVSSAFTNYFTWTINSS--- 409
Query: 1024 NSTLPPVQNFNPTLPPVENFNPTLPPMSNFNPTIPPKENFNPTLPPVQNINPTFPPVQNF 1083
S L +PT + N P +N + N N
Sbjct: 410 -SLLLDWS--SPTTLKIFNNETIFPT--EYNVVALEQTNANEE---WVVYVIEDLTGFGI 461
Query: 1084 NHTLPPM--------------SNFNPTLPPVQNFNPTFPPVKN 1112
H P+ FN P FN PP ++
Sbjct: 462 WH---PIHLHGHDFFIVAQETDVFNSDESPA-KFNLVNPPRRD 500
Score = 35.1 bits (81), Expect = 0.18
Identities = 19/145 (13%), Positives = 37/145 (25%), Gaps = 20/145 (13%)
Query: 1035 PTLPPVENFNPTLPPMSNFNPTIPPKENFNPTLPPVQNINPTFPPVQNFNHTLPPMSNFN 1094
++ P+++ P + + + T N + + +
Sbjct: 358 TSVGTTPRGTCEDEPVASLVPHLALDVGGYSLVDEQVSSAFTNYFTWTINSSSLLLDWSS 417
Query: 1095 PTLPPVQNFNPTFPPVKNINPTFPPVQNFNPTFPPIQNFNPTLPPVP------------- 1141
PT + N FP N N N + + T +
Sbjct: 418 PTTLKIFNNETIFPT--EYNVVALEQTNANEEWVVYVIEDLTGFGIWHPIHLHGHDFFIV 475
Query: 1142 -----NFNPTLPPIHINPTFPPKKN 1161
FN P N PP+++
Sbjct: 476 AQETDVFNSDESPAKFNLVNPPRRD 500
Score = 34.7 bits (80), Expect = 0.24
Identities = 23/149 (15%), Positives = 39/149 (26%), Gaps = 16/149 (10%)
Query: 924 NPSFPPMSNFYPTLPPMPSFNLT-LPPVPSFNPSFPTMSNFNPTLPPMSNFNPTIPPKEN 982
+ P S + L P + + ++ + + + F TI
Sbjct: 352 SSIANPTSVGTTPRGTCEDEPVASLVPHLALDVGGYSLVDEQVSSAFTNYFTWTINSSSL 411
Query: 983 FNPTLPPVQ----NINPTFPPVQNFNHTLPPMSNFNPTIPPVQNFNSTLPPVQ------- 1031
P N FP +N +N N + T +
Sbjct: 412 LLDWSSPTTLKIFNNETIFPT--EYNVVALEQTNANEEWVVYVIEDLTGFGIWHPIHLHG 469
Query: 1032 -NFNPTLPPVENFNPTLPPMSNFNPTIPP 1059
+F + FN P + FN PP
Sbjct: 470 HDFFIVAQETDVFNSDESP-AKFNLVNPP 497
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 35.1 bits (80), Expect = 0.13
Identities = 20/122 (16%), Positives = 33/122 (27%), Gaps = 5/122 (4%)
Query: 1039 PVENFNPTLPPMSNFNPTIPPKENFNPTLPPVQNINPTFPPVQNFNHTLPPMSNFNPTLP 1098
+ + + + IP T + PPV + PP P
Sbjct: 5 HHHHHHSSGLVPRGSHMVIPSAS---VTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNP 61
Query: 1099 PVQNFNPTFPPVKNINPTFPPVQNFNPTFPPIQNFNPTLPPV--PNFNPTLPPIHINPTF 1156
P + PT P + P + P P P +P ++ +P
Sbjct: 62 PDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVP 121
Query: 1157 PP 1158
P
Sbjct: 122 EP 123
Score = 33.2 bits (75), Expect = 0.54
Identities = 17/121 (14%), Positives = 35/121 (28%), Gaps = 3/121 (2%)
Query: 989 PVQNINPTFPPVQNFNHTLPPMSNFNPTIPPVQNFNSTLPPVQNFNPTLPPVENFNPTLP 1048
+ + + + + +P S T + PPV +P PP P
Sbjct: 5 HHHHHHSSGLVPRGSHMVIPSAS---VTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNP 61
Query: 1049 PMSNFNPTIPPKENFNPTLPPVQNINPTFPPVQNFNHTLPPMSNFNPTLPPVQNFNPTFP 1108
P + ++ + PT P ++ P + P + ++ P
Sbjct: 62 PDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVP 121
Query: 1109 P 1109
Sbjct: 122 E 122
Score = 32.4 bits (73), Expect = 1.0
Identities = 16/92 (17%), Positives = 27/92 (29%), Gaps = 2/92 (2%)
Query: 920 PPSFNPSFPPMSNFYPTLPPMPSFNL--TLPPVPSFNPSFPTMSNFNPTLPPMSNFNPTI 977
P M ++ S L PPV +P+ P PP + ++
Sbjct: 11 SSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSV 70
Query: 978 PPKENFNPTLPPVQNINPTFPPVQNFNHTLPP 1009
+ PT P ++ P + P
Sbjct: 71 LQRILRGPTGPGTTSLAPAVRYGRQPGPEAPA 102
Score = 32.0 bits (72), Expect = 1.4
Identities = 21/143 (14%), Positives = 36/143 (25%), Gaps = 18/143 (12%)
Query: 1009 PMSNFNPTIPPVQNFNSTLPPVQNFNPTLPPVENFNPTLPPMSNFNPTIPPKENFNPTLP 1068
+ + + + + +P T + PP++ +P PP P P
Sbjct: 5 HHHHHHSSGLVPRGSHMVIPSAS---VTSAASDFLAALHPPVTVPDPAPPP-----PPAP 56
Query: 1069 PVQNINPTFPPVQNFNHTLPPMSNFNPTLPPVQNFNPTFPPVKNINPTFPPVQNFNPTFP 1128
PP ++ PT P + P P + P
Sbjct: 57 A-----AGNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRY-----GRQPGPEAPASAPP 106
Query: 1129 PIQNFNPTLPPVPNFNPTLPPIH 1151
P L P P +
Sbjct: 107 AAGRAVPGLYHHPVPEPDPVRVE 129
Score = 31.7 bits (71), Expect = 2.0
Identities = 18/137 (13%), Positives = 29/137 (21%), Gaps = 9/137 (6%)
Query: 935 PTLPPMPSFNLTLPPVPSFNPSFPTMSNFNPTLPPMSNFNPTIPPKENFNPTLPPVQNIN 994
S +P + T PP +P PP
Sbjct: 5 HHHHHHSS--GLVPRGSHMVIPSAS-----VTSAASDFLAALHPPVTVPDPAPPPPPAPA 57
Query: 995 PTFPPVQNFNHTLPPMSNFNPTIPPVQNFNSTLPPVQNFNPTLPPVENFNPTLPPMSNFN 1054
PP ++ PT P + + + P P ++
Sbjct: 58 AGNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYH 117
Query: 1055 PTIPPKENFNPTLPPVQ 1071
P E + V
Sbjct: 118 H--PVPEPDPVRVEEVS 132
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 34.3 bits (78), Expect = 0.30
Identities = 10/37 (27%), Positives = 12/37 (32%), Gaps = 6/37 (16%)
Query: 219 CPVGRWGANCTSK----CDCGEI--NGNKCHHLTGTC 249
C WG + CDC N C +G C
Sbjct: 476 CLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQC 512
Score = 33.5 bits (76), Expect = 0.55
Identities = 10/41 (24%), Positives = 13/41 (31%), Gaps = 9/41 (21%)
Query: 219 CPVGRWGANCT-----SKCDCGEI----NGNKCHHLTGTCI 250
C G + + C C + GN C TG C
Sbjct: 423 CKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYCY 463
Score = 31.6 bits (71), Expect = 2.0
Identities = 6/32 (18%), Positives = 8/32 (25%), Gaps = 2/32 (6%)
Query: 218 ACPVGRWGANCTSKCDCGEINGNKCHHLTGTC 249
C G+ CD + G C
Sbjct: 380 PCTCDPAGSENGGICDGY--TDFSVGLIAGQC 409
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL
biogenesis/degradation, cell cycle, P transferase; HET:
GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A*
2vg4_A
Length = 284
Score = 33.7 bits (78), Expect = 0.33
Identities = 15/61 (24%), Positives = 20/61 (32%), Gaps = 6/61 (9%)
Query: 909 PTLPPLQNINLPPSFNPSFPPMSNFYPTLPPMPSFNLTLPPVPSFNPSFPTMSNFNPTLP 968
P LPP P P+FP S + P +P+ P P + S
Sbjct: 2 PQLPP------APDDYPTFPDTSTWPVVFPELPAAPYGGPCRPPQHTSKAAAPRIPADRL 55
Query: 969 P 969
P
Sbjct: 56 P 56
Score = 33.3 bits (77), Expect = 0.47
Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 17/65 (26%)
Query: 1095 PTLPPVQNFNPTFPPVKNINPTFPPVQNFNPTFPPIQNFNPTLPPVPNFNPTLPPIHINP 1154
P LPP + PTFP T+P V P LP P P PP H +
Sbjct: 2 PQLPPAPDDYPTFPD----TSTWPVVF-------------PELPAAPYGGPCRPPQHTSK 44
Query: 1155 TFPPK 1159
P+
Sbjct: 45 AAAPR 49
Score = 31.8 bits (73), Expect = 1.5
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 934 YPTLPPMPSFNLTLPPVPSFNPSFPTMSNFNPTLPPMSNFNPTIPPKENFNPTLPP 989
+P LPP P T P ++ FP + P P P + P +P
Sbjct: 1 FPQLPPAPDDYPTFPDTSTWPVVFPEL----PAAPYGGPCRPPQHTSKAAAPRIPA 52
Score = 31.0 bits (71), Expect = 2.5
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Query: 925 PSFPPMSNFYPTLPPMPSFNLTLPPVPSFNPSFPTMSNFNPTLPPMSNFNPTIPP 979
P PP + YPT P ++ + P +P+ P P P IP
Sbjct: 2 PQLPPAPDDYPTFPDTSTWPVVFPELPAAPYGGPC----RPPQHTSKAAAPRIPA 52
Score = 29.5 bits (67), Expect = 7.1
Identities = 14/47 (29%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
Query: 965 PTLPPMSNFNPTIPPKENF---NPTLPPVQNINPTFPPVQNFNHTLP 1008
P LPP + PT P + P LP P PP P
Sbjct: 2 PQLPPAPDDYPTFPDTSTWPVVFPELPAAPYGGPCRPPQHTSKAAAP 48
Score = 29.5 bits (67), Expect = 7.1
Identities = 14/47 (29%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
Query: 1045 PTLPPMSNFNPTIPPKENF---NPTLPPVQNINPTFPPVQNFNHTLP 1088
P LPP + PT P + P LP P PP P
Sbjct: 2 PQLPPAPDDYPTFPDTSTWPVVFPELPAAPYGGPCRPPQHTSKAAAP 48
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo
sapiens} PDB: 3odo_A
Length = 377
Score = 33.7 bits (77), Expect = 0.41
Identities = 12/66 (18%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 612 KSLKSVVSSVMNELNTSNILPTTTPRNSFYNVINSLDKTNDNARFDDELTSRQRDIHSKI 671
+ L+ + + P +N F + ++ L + + + F D L R+++ I
Sbjct: 44 RMLRVLHDLFFQPMAECLFFPLEELQNIFPS-LDELIEVH--SLFLDRLMKRRQESGYLI 100
Query: 672 KNIGEI 677
+ IG++
Sbjct: 101 EEIGDV 106
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 32.8 bits (74), Expect = 0.88
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 218 ACPVGRWGANCTSKCDCGEINGNKCHHLTGTCILPST 254
G +G NC++ C +++ N TC +
Sbjct: 611 KFEKGPFGKNCSAACPGLQLSNNPVKG--RTCKERDS 645
Score = 30.8 bits (69), Expect = 3.9
Identities = 9/42 (21%), Positives = 13/42 (30%), Gaps = 10/42 (23%)
Query: 219 CPVGRWGANCTSKCD----------CGEINGNKCHHLTGTCI 250
C G G NC + C + N + G C+
Sbjct: 450 CDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCV 491
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 31.6 bits (72), Expect = 0.95
Identities = 6/33 (18%), Positives = 9/33 (27%), Gaps = 1/33 (3%)
Query: 219 CPVGRWGANCTSKCDCGE-INGNKCHHLTGTCI 250
C +G C C + G+ G
Sbjct: 21 CDDYYYGFGCNKFCRPRDDFFGHYACDQNGNKT 53
>3kfu_G Glutamyl-tRNA(Gln) amidotransferase subunit C; ASPRS, gatcab,
ATP-binding, aminoacyl-tRNA synthetase, ligas
nucleotide-binding, protein biosynthesis, ligase-RNA
comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Length = 92
Score = 29.8 bits (68), Expect = 1.3
Identities = 4/36 (11%), Positives = 12/36 (33%), Gaps = 2/36 (5%)
Query: 601 DKLNIMTSDLEKSLKSVVSSVMNELNTSNILPTTTP 636
++ ++ DL++ L V + +
Sbjct: 25 EEEALLLQDLKRILDFV--DALPRVEEGGAEEALGR 58
>3ip4_C Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein
complex, ligase, ATP-binding, nucleotide-bindi protein
biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB:
2df4_C 2dqn_C* 2g5h_C 2g5i_C* 2f2a_C
Length = 100
Score = 29.8 bits (68), Expect = 1.4
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 601 DKLNIMTSDLEKSLKSVVSSVMNELNTSNILPTTTP 636
++ M + LE L + +T + PT
Sbjct: 23 EETEEMANTLESILDFA--KQNDSADTEGVEPTYHV 56
>3h0l_C Glutamyl-tRNA(Gln) amidotransferase subunit C; multi protein
complex, ligase, protein biosynthesis; HET: ADP; 2.30A
{Aquifex aeolicus} PDB: 3h0m_C 3h0r_C*
Length = 94
Score = 29.8 bits (68), Expect = 1.4
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 601 DKLNIMTSDLEKSLKSVVSSVMNELNTSNILPTTTP 636
+++ + L L + + EL+T N+ P
Sbjct: 21 EEIEVFQKQLSDILDFI--DQLKELDTENVEPYIQE 54
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 30.9 bits (70), Expect = 2.0
Identities = 5/52 (9%), Positives = 10/52 (19%), Gaps = 8/52 (15%)
Query: 219 CPVGRWGANCTSKCDCGEING---NKCHHLTGTCILPSTTSTTTETPTPTRI 267
G + + + + + T TRI
Sbjct: 144 SSSG----EAPDSITWKPYDAADLDPTEN-PFDLLDFNQTQPERGDNNLTRI 190
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_A
Length = 231
Score = 30.8 bits (69), Expect = 2.6
Identities = 16/114 (14%), Positives = 28/114 (24%), Gaps = 1/114 (0%)
Query: 888 PNIPPIQNFPKLSKDLSFDFNPTLPPLQNINLPPSFNPSFPPMSNFYPTLPPMPSFNLTL 947
+P Q L+ + P+ + + ++ P
Sbjct: 116 AGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGP 175
Query: 948 PPVPSFNPSFPTMSNFNPTLPPMSNFNPTIPPKENFNPTLPPVQNINPTFPPVQ 1001
PP P + P P P P P P + P P ++
Sbjct: 176 PP-PMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMR 228
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc;
HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Length = 534
Score = 30.7 bits (70), Expect = 3.4
Identities = 19/131 (14%), Positives = 36/131 (27%), Gaps = 11/131 (8%)
Query: 998 PPVQNFNHTLPPMSNFNPTIPPVQNFNSTLPPVQNFNPTLPPVENFNPTLPPMSNFN--- 1054
+NF IP N+T V N LP + + +F
Sbjct: 245 DTDKNFAIMQKFDDTMLDVIPSDLQLNATSYMVYNKTAALPTQNYVDSIDNFLDDFYLQP 304
Query: 1055 ---PTIPPKENFNPTLPPVQNINPTFPPVQNFNHTLPPMSNFNPTLPPVQNFNPTFPPVK 1111
I + + T+ V + FN+ + P +P + +
Sbjct: 305 YEKEAIYGEPDHVITVDVVMDNLKNGVNYAFFNNI----TYTAPKVPTLMTVL-SSGDQA 359
Query: 1112 NINPTFPPVQN 1122
N + + +
Sbjct: 360 NNSEIYGSNTH 370
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 30.6 bits (69), Expect = 3.4
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 219 CPVGRWGANCTSKCDCGEINGNKCHH 244
C G G +C + + I HH
Sbjct: 297 CQEGWHGRHCNKRYEASLIGTKHHHH 322
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 4.5
Identities = 6/34 (17%), Positives = 16/34 (47%), Gaps = 9/34 (26%)
Query: 309 LTKLEDTLDVFNPIQNFDEMSPIIPVRGVSTYTI 342
L KL+ +L ++ + +P + ++ T+
Sbjct: 22 LKKLQASLKLYAD-----DSAPALAIKA----TM 46
>3mem_A Putative signal transduction protein; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI-2; HET: MSE; 2.25A {Marinobacter
aquaeolei}
Length = 457
Score = 30.0 bits (67), Expect = 5.3
Identities = 7/83 (8%), Positives = 20/83 (24%), Gaps = 2/83 (2%)
Query: 250 ILPSTTSTTTETPTPTRIETTTLAPNTVAAVTTTTFATSKEPLKPNTEAPTTLPTIPSVL 309
+ T + + + ++ E LP +P
Sbjct: 132 LTAKAARHDFAVDTANISVNLDNHAADRDQLHSAIKRFTGLRIQQRLEDTLELPPLPETA 191
Query: 310 TKLEDTLDVFNPIQNFDEMSPII 332
++ NP ++ ++
Sbjct: 192 QRIIHLRV--NPNAVMGDLVDVV 212
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA
replication, MCM complex, AAA+ Pro ATP-binding,
DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Length = 595
Score = 29.9 bits (68), Expect = 5.6
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 907 FNPTLPPLQNINLPPS 922
+ P NINLPP+
Sbjct: 448 YISERPVSDNINLPPT 463
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo
sapiens} PDB: 3odx_A
Length = 536
Score = 30.0 bits (67), Expect = 6.3
Identities = 11/66 (16%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 612 KSLKSVVSSVMNELNTSNILPTTTPRNSFYNVINSLDKTNDNARFDDELTSRQRDIHSKI 671
+ L+ + + P +N F ++ ++ ++ F D L R+++ I
Sbjct: 197 RMLRVLHDLFFQPMAECLFFPLEELQNIFPSLDELIEV---HSLFLDRLMKRRQESGYLI 253
Query: 672 KNIGEI 677
+ IG++
Sbjct: 254 EEIGDV 259
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase
family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A
{Hypocrea jecorina} PDB: 2vn7_A*
Length = 599
Score = 29.8 bits (66), Expect = 7.3
Identities = 17/116 (14%), Positives = 30/116 (25%)
Query: 1110 VKNINPTFPPVQNFNPTFPPIQNFNPTLPPVPNFNPTLPPIHINPTFPPKKNFNVISSQQ 1169
K + + F+ + +F +
Sbjct: 393 AKYVPADGSLAEQFDRNSGTPLSALHLTWSYASFLTATARRAGIVPPSWANSSASTIPST 452
Query: 1170 NFDLSVSSAFPSNSNWLNNMTPTLPSLSLTTPTVFPLPSRTPTSPPATFTLISTTQ 1225
SV ++ + + T + PLP TPTS TF + +TQ
Sbjct: 453 CSGASVVGSYSRPTATSFPPSQTPKPGVPSGTPYTPLPCATPTSVAVTFHELVSTQ 508
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme,
monooxygenase, macrolide, filipi metal-binding; HET: HEM;
2.30A {Streptomyces avermitilis}
Length = 408
Score = 29.5 bits (67), Expect = 8.7
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 1189 MTPTLPSLSLTTPTVFPLPSRTPTSPPATF 1218
MT T L+ + FP P PP +
Sbjct: 1 MTETEIRLTGSPAPSFPQDRTCPYQPPKAY 30
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A
{Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB:
1aso_A* 1asp_A* 1asq_A*
Length = 552
Score = 29.2 bits (66), Expect = 9.4
Identities = 11/116 (9%), Positives = 24/116 (20%), Gaps = 3/116 (2%)
Query: 948 PPVPSFNPSFPTMSNFNPTLPPMSNFNPTIPPKENFNPTLPPVQNINPTFPPVQNFNHTL 1007
P ++ + + P + + I +
Sbjct: 302 SVSKLPTSPPPQTPAWDDFDRSKNFTYRITAAMGSPKPPVKFNRRIFLLNTQNVINGYVK 361
Query: 1008 PPMSN---FNPTIPPVQNFNSTLPPVQNFNPTLPPVENFNPTLPPMSNFNPTIPPK 1060
+++ P P + L + NP P +N I
Sbjct: 362 WAINDVSLALPPTPYLGAMKYNLLHAFDQNPPPEVFPEDYDIDTPPTNEKTRIGNG 417
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.132 0.396
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 18,858,449
Number of extensions: 1136454
Number of successful extensions: 2275
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2067
Number of HSP's successfully gapped: 129
Length of query: 1262
Length of database: 6,701,793
Length adjustment: 105
Effective length of query: 1157
Effective length of database: 3,770,088
Effective search space: 4361991816
Effective search space used: 4361991816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.5 bits)