RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17877
         (1262 letters)



>d1rh7a_ g.77.1.1 (A:) Resistin-like beta (FIZZ2) {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 81

 Score = 31.7 bits (72), Expect = 0.075
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 9/67 (13%)

Query: 182 PFDSEINLEYYLSEKKNS--SQSIYCSLVSPHSMQLLAACPVGR--WGANCTSKCDCGEI 237
            F+S ++    + E  +    ++I C+ V+  S   LA+CP G    G  C   C   +I
Sbjct: 2   SFESLVDQR--IKEALSRQEPKTISCTSVT--SSGRLASCPAGMVVTGCACGYGCGSWDI 57

Query: 238 -NGNKCH 243
            NGN CH
Sbjct: 58  RNGNTCH 64


>d2vk9a1 c.68.1.22 (A:2-541) Alpha-toxin {Clostridium novyi [TaxId:
           1542]}
          Length = 540

 Score = 31.4 bits (71), Expect = 0.86
 Identities = 13/55 (23%), Positives = 21/55 (38%)

Query: 517 HVIPTEIKTIFKGGPTVSEAATTGTSILNGDSIAKSISNNLNAFAKSDSVTVQAT 571
              P    T+F  GP +  +AT  T     ++     S N   F  S+++    T
Sbjct: 462 GFKPEVNSTVFFSGPNIYSSATCDTYHFIKNTFDMLSSQNQEIFEASNNLYFSKT 516


>d1txda1 a.87.1.1 (A:766-999) Rho guanine nucleotide exchange factor
           12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]}
          Length = 234

 Score = 29.0 bits (64), Expect = 2.9
 Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 2/91 (2%)

Query: 612 KSLKSVVSSVMNELNTSNILPTTTPRNSFYNVINSLDKTNDNARFDDELTSRQRDIHSKI 671
           ++LK +       ++   IL  +  R  F N+ + L         +     R+R+  S I
Sbjct: 39  RTLKVLDQVFYQRVSREGILSPSELRKIFSNLEDILQLHIGL--NEQMKAVRKRNETSVI 96

Query: 672 KNIGEITFPTLPEVRTNEFLNPAALTTSSVP 702
             IGE            +  + AA   S+ P
Sbjct: 97  DQIGEDLLTWFSGPGEEKLKHAAATFCSNQP 127


>d2gm6a1 b.82.1.19 (A:11-202) Cysteine dioxygenase type I {Ralstonia
           eutropha [TaxId: 106590]}
          Length = 192

 Score = 28.8 bits (64), Expect = 3.1
 Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 3/53 (5%)

Query: 136 DVQSASCGIDVVHI---PESFKRPVHISVYGHPAAETSVYILDVVHREEPFDS 185
            V++ S  +  +H        +  + I VYG         +       +PF S
Sbjct: 125 HVEAVSPTVGDIHRVHNAYDDRVSISIHVYGANIGGVRRSVYTEAGERKPFIS 177


>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 273

 Score = 28.0 bits (62), Expect = 7.6
 Identities = 15/78 (19%), Positives = 23/78 (29%), Gaps = 4/78 (5%)

Query: 857 TQSTSPTERQTSSHITSTTLTKVSEYSSTNFPNIPPIQNFPKLSKDLSFDFNPTLPPLQN 916
              TS  E        S  +    +    N  +  PI     +   L+  + PT  P   
Sbjct: 83  AAFTSKLEGMFKDMELSKDIMVHFKQHMQNQSDSGPIDLTVNI---LTMGYWPTYTP-ME 138

Query: 917 INLPPSFNPSFPPMSNFY 934
           ++L P           FY
Sbjct: 139 VHLTPEMIKLQEVFKAFY 156


>d1lg7a_ d.213.1.1 (A:) VSV matrix protein {Vesicular stomatitis
           virus, VSV [TaxId: 11276]}
          Length = 170

 Score = 27.1 bits (60), Expect = 8.3
 Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 148 HIPESFKRPVHISVY-GHPAAETSVYILDVVHREEPFDSEINLEYYLSEKKNS 199
           ++PE F+RP +I +Y G      ++Y  + +          N   +   ++ +
Sbjct: 96  NVPEHFRRPFNIGLYKGTVELTMTIYDDESLEAAPMIWDHFNSSKFSDFREKA 148


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.132    0.396 

Gapped
Lambda     K      H
   0.267   0.0603    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,728,022
Number of extensions: 236138
Number of successful extensions: 494
Number of sequences better than 10.0: 1
Number of HSP's gapped: 491
Number of HSP's successfully gapped: 20
Length of query: 1262
Length of database: 2,407,596
Length adjustment: 96
Effective length of query: 1166
Effective length of database: 1,089,516
Effective search space: 1270375656
Effective search space used: 1270375656
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.4 bits)