BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17879
(154 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UJS|A Chain A, Solution Structure Of The Villin Headpiece Domain Of Human
Actin-Binding Lim Protein Homologue (Kiaa0843 Protein)
Length = 88
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 46/65 (70%), Gaps = 3/65 (4%)
Query: 93 KIYPYHLLIITNY---RLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKK 149
KIYPY LL++T RLP DVDR LERHLS EF +F T +EF RL W+RN+LKK
Sbjct: 18 KIYPYELLLVTTRGRNRLPKDVDRTRLERHLSQEEFYQVFGMTISEFDRLALWKRNELKK 77
Query: 150 RARLF 154
+ARLF
Sbjct: 78 QARLF 82
>pdb|2L3X|A Chain A, Villin Head Piece Domain Of Human Ablim2
Length = 67
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 45/65 (69%), Gaps = 3/65 (4%)
Query: 93 KIYPYHLLIITN---YRLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKK 149
KIYPY LI+TN +LP DVDR LERHLS EF+ +F + EF RL W+RNDLKK
Sbjct: 3 KIYPYDSLIVTNRIRVKLPKDVDRTRLERHLSPEEFQEVFGMSIEEFDRLALWKRNDLKK 62
Query: 150 RARLF 154
+A LF
Sbjct: 63 KALLF 67
>pdb|1ZV6|A Chain A, Nmr Structure Of The Human Dematin Headpiece S74e Mutant
Length = 68
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 45/65 (69%), Gaps = 3/65 (4%)
Query: 93 KIYPYHLLIITNY---RLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKK 149
+IYPY +L++TN +LPP VDR LERHLS +F +F + EF +L W+RN+LKK
Sbjct: 4 QIYPYEMLVVTNKGRTKLPPGVDRMRLERHLSAEDFSRVFAMSPEEFGKLALWKRNELKK 63
Query: 150 RARLF 154
+A LF
Sbjct: 64 KAELF 68
>pdb|1QZP|A Chain A, Nmr Structure Of The Human Dematin Headpiece Domain
Length = 68
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 45/65 (69%), Gaps = 3/65 (4%)
Query: 93 KIYPYHLLIITNY---RLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKK 149
+IYPY +L++TN +LPP VDR LERHLS +F +F + EF +L W+RN+LKK
Sbjct: 4 QIYPYEMLVVTNKGRTKLPPGVDRMRLERHLSAEDFSRVFAMSPEEFGKLALWKRNELKK 63
Query: 150 RARLF 154
+A LF
Sbjct: 64 KASLF 68
>pdb|1YU8|X Chain X, Crystal Structure Of The R37a Mutant Of Villin Headpiece
Length = 67
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 86 PMSLEPPKIYPYHLLIITNYR-LPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRR 144
P LE +P +L+ T LP VD E HLSD +F+ +F TR+ F LP W++
Sbjct: 1 PTKLE---TFPLDVLVNTAAEDLPRGVDPSAKENHLSDEDFKAVFGMTRSAFANLPLWKQ 57
Query: 145 NDLKKRARLF 154
+LKK LF
Sbjct: 58 QNLKKEKGLF 67
>pdb|1YU5|X Chain X, Crystal Structure Of The Headpiece Domain Of Chicken
Villin
pdb|2RJY|A Chain A, Crystal Structure Of Villin Headpiece, P21 21 21 Space
Group
pdb|2RJX|A Chain A, Crystal Structure Of The Headpiece Domain Of Chicken
Villin, P61 Space Group
pdb|2RJX|B Chain B, Crystal Structure Of The Headpiece Domain Of Chicken
Villin, P61 Space Group
pdb|1QQV|A Chain A, Solution Structure Of The Headpiece Domain Of Chicken
Villin
Length = 67
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 86 PMSLEPPKIYPYHLLIITNYR-LPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRR 144
P LE +P +L+ T LP VD E HLSD +F+ +F TR+ F LP W++
Sbjct: 1 PTKLE---TFPLDVLVNTAAEDLPRGVDPSRKENHLSDEDFKAVFGMTRSAFANLPLWKQ 57
Query: 145 NDLKKRARLF 154
+LKK LF
Sbjct: 58 QNLKKEKGLF 67
>pdb|3NKJ|A Chain A, Crystal Structure Of Hp67 L61g
Length = 67
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 86 PMSLEPPKIYPYHLLIITNYR-LPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRR 144
P LE +P +L+ T LP VD E HLSD +F+ +F TR+ F P W++
Sbjct: 1 PTKLE---TFPLDVLVNTAAEDLPRGVDPSRKENHLSDEDFKAVFGMTRSAFANGPLWKQ 57
Query: 145 NDLKKRARLF 154
+LKK LF
Sbjct: 58 QNLKKEKGLF 67
>pdb|2RJV|A Chain A, Crystal Structure Of The H41y Mutant Of Villin Headpiece,
P 21 21 21 Space Group
pdb|2RJW|A Chain A, The Crystal Structure Of The H41y Mutant Of Villin
Headpiece, P61 Space Group.
pdb|2RJW|B Chain B, The Crystal Structure Of The H41y Mutant Of Villin
Headpiece, P61 Space Group
Length = 67
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 86 PMSLEPPKIYPYHLLIITNYR-LPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRR 144
P LE +P +L+ T LP VD E +LSD +F+ +F TR+ F LP W++
Sbjct: 1 PTKLE---TFPLDVLVNTAAEDLPRGVDPSRKENYLSDEDFKAVFGMTRSAFANLPLWKQ 57
Query: 145 NDLKKRARLF 154
+LKK LF
Sbjct: 58 QNLKKEKGLF 67
>pdb|3MYC|A Chain A, Crystal Structure Of Hp67 H41f - P212121
pdb|3MYA|A Chain A, Crystal Structure Of Hp67 H41f - P61
pdb|3MYA|B Chain B, Crystal Structure Of Hp67 H41f - P61
Length = 67
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 86 PMSLEPPKIYPYHLLIITNYR-LPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRR 144
P LE +P +L+ T LP VD E LSD +F+ +F TR+ F LP W++
Sbjct: 1 PTKLE---TFPLDVLVNTAAEDLPRGVDPSRKENFLSDEDFKAVFGMTRSAFANLPLWKQ 57
Query: 145 NDLKKRARLF 154
+LKK LF
Sbjct: 58 QNLKKEKGLF 67
>pdb|1YU7|X Chain X, Crystal Structure Of The W64y Mutant Of Villin Headpiece
Length = 67
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 86 PMSLEPPKIYPYHLLIITNYR-LPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRR 144
P LE +P +L+ T LP VD E HLSD +F+ +F TR+ F LP +++
Sbjct: 1 PTKLE---TFPLDVLVNTAAEDLPRGVDPSRKENHLSDEDFKAVFGMTRSAFANLPLYKQ 57
Query: 145 NDLKKRARLF 154
+LKK LF
Sbjct: 58 QNLKKEKGLF 67
>pdb|3MYE|X Chain X, Crystal Structure Of Hp67 L61gl
Length = 68
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 86 PMSLEPPKIYPYHLLIITNYR-LPPDVDRKNLERHLSDVEFETLFLCTRAEFYR-LPTWR 143
P LE +P +L+ T LP VD E HLSD +F+ +F TR+ F LP W+
Sbjct: 1 PTKLE---TFPLDVLVNTAAEDLPRGVDPSRKENHLSDEDFKAVFGMTRSAFANGLPLWK 57
Query: 144 RNDLKKRARLF 154
+ +LKK LF
Sbjct: 58 QQNLKKEKGLF 68
>pdb|2K6M|S Chain S, Solution Structure Of Human Supervillin Headpiece
pdb|2K6N|A Chain A, Solution Structure Of Human Supervillin Headpiece,
Minimized Average
Length = 67
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 107 LPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF 154
LP VD LE +L+D +FE TR E+ LP W++ +LKK LF
Sbjct: 20 LPEGVDPLKLEIYLTDEDFEFALDMTRDEYNALPAWKQVNLKKAKGLF 67
>pdb|2PPZ|A Chain A, Nmr Solution Structure Of The Villin Headpiece Mutant G34l
Length = 36
Score = 38.1 bits (87), Expect = 0.002, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 120 LSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF 154
LSD +F+ +F TR+ F LP W++ +LKK LF
Sbjct: 2 LSDEDFKAVFGMTRSAFANLPLWKQQNLKKEKLLF 36
>pdb|1VII|A Chain A, Thermostable Subdomain From Chicken Villin Headpiece, Nmr,
Minimized Average Structure
Length = 36
Score = 38.1 bits (87), Expect = 0.002, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 120 LSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF 154
LSD +F+ +F TR+ F LP W++ +LKK LF
Sbjct: 2 LSDEDFKAVFGMTRSAFANLPLWKQQNLKKEKGLF 36
>pdb|1YRF|A Chain A, Chicken Villin Subdomain Hp-35, N68h, Ph6.7
pdb|1YRI|A Chain A, Chicken Villin Subdomain Hp-35, N68h, Ph6.4
Length = 35
Score = 37.0 bits (84), Expect = 0.004, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 120 LSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF 154
LSD +F+ +F TR+ F LP W++ LKK LF
Sbjct: 1 LSDEDFKAVFGMTRSAFANLPLWKQQHLKKEKGLF 35
>pdb|1WY3|A Chain A, Chicken Villin Subdomain Hp-35, K65(Nle), N68h, Ph7.0
pdb|1WY4|A Chain A, Chicken Villin Subdomain Hp-35, K65(nle), N68h, Ph5.1
Length = 35
Score = 35.4 bits (80), Expect = 0.012, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 120 LSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF 154
LSD +F+ +F TR+ F LP W + LKK LF
Sbjct: 1 LSDEDFKAVFGMTRSAFANLPLWXQQHLKKEKGLF 35
>pdb|3TRV|A Chain A, Crystal Structure Of Quasiracemic Villin Headpiece
Subdomain Containing (F5phe17) Substitution
Length = 35
Score = 33.9 bits (76), Expect = 0.035, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 120 LSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF 154
LSD +F+ +F TR+ LP W++ LKK LF
Sbjct: 1 LSDEDFKAVFGMTRSAXANLPLWKQQHLKKEKGLF 35
>pdb|1UND|A Chain A, Solution Structure Of The Human Advillin C-Terminal
Headpiece Subdomain
Length = 37
Score = 33.9 bits (76), Expect = 0.041, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 119 HLSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF 154
+LS+ +F ++F TR +F LP W++ +KK LF
Sbjct: 2 YLSEQDFVSVFGITRGQFAALPGWKQLQMKKEKGLF 37
>pdb|2F4K|A Chain A, Chicken Villin Subdomain Hp-35, K65(Nle), N68h, K70(Nle),
Ph9
Length = 35
Score = 33.1 bits (74), Expect = 0.057, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 120 LSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF 154
LSD +F+ +F TR+ F LP W + L K LF
Sbjct: 1 LSDEDFKAVFGMTRSAFANLPLWXQQHLXKEKGLF 35
>pdb|2JM0|A Chain A, Solution Structure Of Chicken Villin Headpiece Subdomain
Containing A Fluorinated Side Chain In The Core
Length = 35
Score = 33.1 bits (74), Expect = 0.063, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 120 LSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF 154
LSD +F + TR+ F LP WR+ +L++ LF
Sbjct: 1 LSDEDFRAVXGMTRSAFANLPLWRQQNLRRERGLF 35
>pdb|3TRW|A Chain A, Crystal Structure Of Racemic Villin Headpiece Subdomain
Crystallized In Space Group P-1
pdb|3TRW|D Chain D, Crystal Structure Of Racemic Villin Headpiece Subdomain
Crystallized In Space Group P-1
Length = 35
Score = 31.6 bits (70), Expect = 0.21, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 120 LSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF 154
LSD +F+ +F TR+ F LP ++ LKK LF
Sbjct: 1 LSDEDFKAVFGMTRSAFANLPLAKQQHLKKEKGLF 35
>pdb|3TJW|B Chain B, Crystal Structure Of Quasiracemic Villin Headpiece
Subdomain Containing (F5phe10) Substitution
Length = 34
Score = 31.2 bits (69), Expect = 0.22, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 120 LSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARL 153
LSD +F+ + TR+ F LP W++ LKK L
Sbjct: 1 LSDEDFKAVXGMTRSAFANLPLWKQQHLKKEKGL 34
>pdb|1UNC|A Chain A, Solution Structure Of The Human Villin C-Terminal
Headpiece Subdomain
Length = 36
Score = 29.6 bits (65), Expect = 0.67, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 120 LSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF 154
LS +F F T A F LP W++ +LKK LF
Sbjct: 2 LSIEDFTQAFGMTPAAFSALPRWKQQNLKKEKGLF 36
>pdb|3IDE|A Chain A, Structure Of Ipnv Subviral Particle
pdb|3IDE|B Chain B, Structure Of Ipnv Subviral Particle
pdb|3IDE|C Chain C, Structure Of Ipnv Subviral Particle
pdb|3IDE|D Chain D, Structure Of Ipnv Subviral Particle
pdb|3IDE|E Chain E, Structure Of Ipnv Subviral Particle
Length = 442
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 10/101 (9%)
Query: 64 GSLGYAASYSNHIQRSLPNMSQPMSLEP-PKIYPYHLLII---TNYRLPPDVDR-KNLER 118
G++G A+ + ++P + +P++L K+ P +L + +NY L P+ + KN+
Sbjct: 327 GTMGPASVSFSSGNGNVPGVLRPITLVAYEKMTPLSILTVAGVSNYELIPNPELLKNMVT 386
Query: 119 HLS-----DVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF 154
+ + + L R E WR + K+R R+F
Sbjct: 387 RYGKYDPEGLNYAKMILSHREELDIRTVWRTEEYKERTRVF 427
>pdb|3AHH|A Chain A, H142a Mutant Of Phosphoketolase From Bifidobacterium Breve
Complexed With Acetyl Thiamine Diphosphate
Length = 845
Score = 27.7 bits (60), Expect = 3.1, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 48 VPNGGAPELPVSSTYAGSLGYAASYSNHIQRSLPNMSQP 86
+P+ APE P S G LGYA S++ + P++ P
Sbjct: 159 IPSAFAPETPGSIHEGGELGYALSHAYGAVMNNPSLFVP 197
>pdb|2O1X|A Chain A, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|B Chain B, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|C Chain C, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|D Chain D, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
Length = 629
Score = 26.9 bits (58), Expect = 4.1, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 23 TLFSTFTVSNGSIYDLHSNIHPHHHVPNGGAPELPVSSTYAGSLG----YAASYSNHIQR 78
T T + GS S +HPH ++ G A E+ V++ +L A YS +QR
Sbjct: 342 TFVVTPAMREGSGLVEFSRVHPHRYLDVGIAEEVAVTTAAGMALQGMRPVVAIYSTFLQR 401
Query: 79 SLPNMSQPMSLE 90
+ + +++E
Sbjct: 402 AYDQVLHDVAIE 413
>pdb|3AHJ|A Chain A, H553a Mutant Of Phosphoketolase From Bifidobacterium Breve
Length = 845
Score = 26.6 bits (57), Expect = 5.7, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 48 VPNGGAPELPVSSTYAGSLGYAASYSNHIQRSLPNMSQP 86
+P+ APE P S G LGYA S++ + P++ P
Sbjct: 159 IPSHFAPETPGSIHEGGELGYALSHAYGAVMNNPSLFVP 197
>pdb|3AHI|A Chain A, H320a Mutant Of Phosphoketolase From Bifidobacterium Breve
Complexed With Acetyl Thiamine Diphosphate
Length = 845
Score = 26.6 bits (57), Expect = 5.7, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 48 VPNGGAPELPVSSTYAGSLGYAASYSNHIQRSLPNMSQP 86
+P+ APE P S G LGYA S++ + P++ P
Sbjct: 159 IPSHFAPETPGSIHEGGELGYALSHAYGAVMNNPSLFVP 197
>pdb|3AHG|A Chain A, H64a Mutant Of Phosphoketolase From Bifidobacterium Breve
Complexed With A Tricyclic Ring Form Of Thiamine
Diphosphate
Length = 845
Score = 26.6 bits (57), Expect = 5.7, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 48 VPNGGAPELPVSSTYAGSLGYAASYSNHIQRSLPNMSQP 86
+P+ APE P S G LGYA S++ + P++ P
Sbjct: 159 IPSHFAPETPGSIHEGGELGYALSHAYGAVMNNPSLFVP 197
>pdb|3AHC|A Chain A, Resting Form Of Phosphoketolase From Bifidobacterium Breve
pdb|3AHD|A Chain A, Phosphoketolase From Bifidobacterium Breve Complexed With
2-Acetyl- Thiamine Diphosphate
pdb|3AHE|A Chain A, Phosphoketolase From Bifidobacterium Breve Complexed With
Dihydroxyethyl Thiamine Diphosphate
pdb|3AHF|A Chain A, Phosphoketolase From Bifidobacterium Breve Complexed With
Inorganic Phosphate
Length = 845
Score = 26.6 bits (57), Expect = 5.7, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 48 VPNGGAPELPVSSTYAGSLGYAASYSNHIQRSLPNMSQP 86
+P+ APE P S G LGYA S++ + P++ P
Sbjct: 159 IPSHFAPETPGSIHEGGELGYALSHAYGAVMNNPSLFVP 197
>pdb|3AI7|A Chain A, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|B Chain B, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|C Chain C, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|D Chain D, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|E Chain E, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|F Chain F, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|G Chain G, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|H Chain H, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
Length = 831
Score = 26.2 bits (56), Expect = 7.6, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 48 VPNGGAPELPVSSTYAGSLGYAASYS 73
+P+ APE P S G LGYA S++
Sbjct: 139 IPSHFAPETPGSIHEGGELGYALSHA 164
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,117,163
Number of Sequences: 62578
Number of extensions: 216553
Number of successful extensions: 603
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 566
Number of HSP's gapped (non-prelim): 37
length of query: 154
length of database: 14,973,337
effective HSP length: 90
effective length of query: 64
effective length of database: 9,341,317
effective search space: 597844288
effective search space used: 597844288
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)