Query psy17879
Match_columns 154
No_of_seqs 129 out of 321
Neff 3.5
Searched_HMMs 29240
Date Sat Aug 17 01:20:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17879.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17879hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k6m_S Supervillin; SVHP, HP, 100.0 3.6E-31 1.2E-35 184.5 7.5 67 86-154 1-67 (67)
2 1qzp_A Dematin; villin headpie 100.0 1.1E-30 3.9E-35 182.2 4.5 63 92-154 3-68 (68)
3 1yu8_X Villin; alpha helix, 3- 100.0 4.2E-30 1.4E-34 179.4 6.5 63 92-154 4-67 (67)
4 1ujs_A Actin-binding LIM prote 100.0 8.5E-30 2.9E-34 185.9 4.6 63 92-154 17-82 (88)
5 1und_A Advillin, P92; actin bi 99.8 1E-21 3.5E-26 123.4 3.9 37 118-154 1-37 (37)
6 1wy3_A Villin; structural prot 99.8 1.9E-20 6.4E-25 116.5 4.4 35 120-154 1-35 (35)
7 3go5_A Multidomain protein wit 46.2 11 0.00037 31.3 2.5 23 116-138 242-264 (285)
8 2xzm_M RPS18E; ribosome, trans 38.0 18 0.00061 28.1 2.4 34 109-143 50-85 (155)
9 1v32_A AT5G08430, hypothetical 37.9 3 0.0001 30.2 -1.9 36 111-146 54-89 (101)
10 3j20_O 30S ribosomal protein S 37.4 9.3 0.00032 29.5 0.7 35 109-143 43-78 (148)
11 1uhr_A SWI/SNF related, matrix 36.9 5.8 0.0002 27.9 -0.5 32 111-142 46-77 (93)
12 2p63_A Cell division control p 34.4 20 0.00068 24.0 1.8 28 123-150 29-56 (56)
13 1z4h_A TORI, TOR inhibition pr 32.5 20 0.00067 22.8 1.6 23 117-139 8-30 (66)
14 1v31_A Hypothetical protein RA 31.0 5.1 0.00018 28.1 -1.6 32 111-142 46-77 (93)
15 3lsg_A Two-component response 25.3 40 0.0014 22.2 2.1 16 123-138 88-103 (103)
16 3oou_A LIN2118 protein; protei 22.6 48 0.0016 22.0 2.2 16 123-138 90-105 (108)
17 1t1e_A Kumamolisin; proenzyme, 21.6 57 0.0019 29.1 3.0 30 116-145 68-97 (552)
18 3mn2_A Probable ARAC family tr 21.3 53 0.0018 21.7 2.2 16 123-138 89-104 (108)
19 2k9s_A Arabinose operon regula 21.2 54 0.0018 21.8 2.2 16 123-138 89-104 (107)
20 4hlb_A Uncharacterized protein 21.1 53 0.0018 24.2 2.2 24 130-153 63-86 (115)
21 3mkb_A Hemoglobin subunit alph 20.9 26 0.00088 25.5 0.5 19 14-32 31-50 (140)
No 1
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=99.97 E-value=3.6e-31 Score=184.52 Aligned_cols=67 Identities=37% Similarity=0.547 Sum_probs=62.7
Q ss_pred CCCCCCCCcCCHHHHHhhcCCCCCCCCccccccCCChHHHHHHhCCCHHHHhhChhHHHHHHhHhcCCC
Q psy17879 86 PMSLEPPKIYPYHLLIITNYRLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF 154 (154)
Q Consensus 86 ~l~~~~~k~Ypye~L~~~~~~LP~gVDptklE~YLSDeDF~~VFGMsr~EF~~LP~WKQ~~LKK~~gLF 154 (154)
+|+....++|||++|+. .++|+|||++++|.||||+||++||||+|+||++||+|||+++||++|||
T Consensus 1 ~l~~l~~~~yp~~~L~~--~~lP~gVD~~~lE~yLsdedF~~vFgmsr~eF~~LP~WKq~~lKk~~~LF 67 (67)
T 2k6m_S 1 MLAKLCKTIYPLADLLA--RPLPEGVDPLKLEIYLTDEDFEFALDMTRDEYNALPAWKQVNLKKAKGLF 67 (67)
T ss_dssp CCSSCCCCCCCHHHHTT--SCCCSSSBTTBCGGGSCHHHHHHHTSSCHHHHTTSCHHHHHHHHHHHTCC
T ss_pred ChHHHcCCccCHHHHhc--CCCCCCCCchHHHhhCCHHHHHHHHCcCHHHHHHCcHHHHHHHHHHhCCC
Confidence 35666778999999984 58999999999999999999999999999999999999999999999999
No 2
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=99.96 E-value=1.1e-30 Score=182.19 Aligned_cols=63 Identities=51% Similarity=0.954 Sum_probs=59.6
Q ss_pred CCcCCHHHHHhh---cCCCCCCCCccccccCCChHHHHHHhCCCHHHHhhChhHHHHHHhHhcCCC
Q psy17879 92 PKIYPYHLLIIT---NYRLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF 154 (154)
Q Consensus 92 ~k~Ypye~L~~~---~~~LP~gVDptklE~YLSDeDF~~VFGMsr~EF~~LP~WKQ~~LKK~~gLF 154 (154)
.++|||++|+.+ ..++|+|||++++|.||||+||++||||+|+||++||+|||+++||++|||
T Consensus 3 ~~~ypy~~L~~~~~~~~~lP~gVD~~~lE~yLsdedF~~vFgmsr~eF~~LP~WKq~~lKk~~~LF 68 (68)
T 1qzp_A 3 LQIYPYEMLVVTNKGRTKLPPGVDRMRLERHLSAEDFSRVFAMSPEEFGKLALWKRNELKKKASLF 68 (68)
T ss_dssp CCCBCSTTTCCCSCTTCCCCSSCCGGGCGGGBCHHHHHHHSSSCHHHHHHSCHHHHHHHHHHHTCC
T ss_pred CccccHHHHHHhcccccCCCCCCCchHHHhhCCHHHHHHHHCcCHHHHHHChHHHHHHHHHHhcCC
Confidence 478999999843 478999999999999999999999999999999999999999999999999
No 3
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=99.96 E-value=4.2e-30 Score=179.35 Aligned_cols=63 Identities=38% Similarity=0.699 Sum_probs=59.8
Q ss_pred CCcCCHHHHH-hhcCCCCCCCCccccccCCChHHHHHHhCCCHHHHhhChhHHHHHHhHhcCCC
Q psy17879 92 PKIYPYHLLI-ITNYRLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF 154 (154)
Q Consensus 92 ~k~Ypye~L~-~~~~~LP~gVDptklE~YLSDeDF~~VFGMsr~EF~~LP~WKQ~~LKK~~gLF 154 (154)
.++|||++|+ ..+.++|+|||++++|.||||+||++||||+|+||++||+|||+++||++|||
T Consensus 4 ~~~yp~~~L~~~~~~~lP~gVD~~~lE~yLsdedF~~vFgms~~eF~~LP~WKq~~lKk~~~LF 67 (67)
T 1yu8_X 4 LETFPLDVLVNTAAEDLPRGVDPSAKENHLSDEDFKAVFGMTRSAFANLPLWKQQNLKKEKGLF 67 (67)
T ss_dssp CCCCCHHHHHSSCGGGSCTTCCTTCGGGGSCHHHHHHHHSSCHHHHHTSCHHHHHHHHHHTTCC
T ss_pred ccccCHHHHHHhccCCCCcccChHHHHhcCCHHHHHHHHCcCHHHHHHChHHHHHHHHHHhcCC
Confidence 4689999999 44678999999999999999999999999999999999999999999999998
No 4
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=99.96 E-value=8.5e-30 Score=185.85 Aligned_cols=63 Identities=62% Similarity=0.985 Sum_probs=59.6
Q ss_pred CCcCCHHHHHhh---cCCCCCCCCccccccCCChHHHHHHhCCCHHHHhhChhHHHHHHhHhcCCC
Q psy17879 92 PKIYPYHLLIIT---NYRLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF 154 (154)
Q Consensus 92 ~k~Ypye~L~~~---~~~LP~gVDptklE~YLSDeDF~~VFGMsr~EF~~LP~WKQ~~LKK~~gLF 154 (154)
.++|||++|+.+ ..++|+|||+++||.||||+||++||||+|+||++||+|||+++||++|||
T Consensus 17 ~~~Ypye~L~~~~~~~~~lP~gVD~tklE~YLSdedF~~vFgMsr~eF~~LP~WKq~~lKK~~gLF 82 (88)
T 1ujs_A 17 YKIYPYELLLVTTRGRNRLPKDVDRTRLERHLSQEEFYQVFGMTISEFDRLALWKRNELKKQARLF 82 (88)
T ss_dssp CCCCCTTTTCCCTTTTCCCCSSCCTTTGGGGSCTTHHHHHHSSCHHHHTTSCHHHHHHHHHHTTCC
T ss_pred cccccHHHHHHhcccccCCCcccCHHHHHhcCCHHHHHHHHCcCHHHHHHChHHHHHHHHHHcCCc
Confidence 589999999853 368999999999999999999999999999999999999999999999999
No 5
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=99.84 E-value=1e-21 Score=123.37 Aligned_cols=37 Identities=38% Similarity=0.695 Sum_probs=35.8
Q ss_pred cCCChHHHHHHhCCCHHHHhhChhHHHHHHhHhcCCC
Q psy17879 118 RHLSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF 154 (154)
Q Consensus 118 ~YLSDeDF~~VFGMsr~EF~~LP~WKQ~~LKK~~gLF 154 (154)
.||||+||++||||+|+||++||+|||+++||++|||
T Consensus 1 ~yLsd~dF~~vFgmsr~eF~~LP~WKq~~lKk~~~LF 37 (37)
T 1und_A 1 XYLSEQDFVSVFGITRGQFAALPGWKQLQMKKEKGLF 37 (37)
T ss_dssp -CCCHHHHHHHHSSCHHHHHHSCHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHCcCHHHHHHChHHHHHHHHHHhcCC
Confidence 4999999999999999999999999999999999998
No 6
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=99.81 E-value=1.9e-20 Score=116.46 Aligned_cols=35 Identities=46% Similarity=0.787 Sum_probs=34.6
Q ss_pred CChHHHHHHhCCCHHHHhhChhHHHHHHhHhcCCC
Q psy17879 120 LSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF 154 (154)
Q Consensus 120 LSDeDF~~VFGMsr~EF~~LP~WKQ~~LKK~~gLF 154 (154)
|||+||++||||+|+||++||+|||+++||++|||
T Consensus 1 Lsd~dF~~vFgmsr~eF~~LP~WKq~~lKk~~~LF 35 (35)
T 1wy3_A 1 LSDEDFKAVFGMTRSAFANLPLWLQQHLKKEKGLF 35 (35)
T ss_dssp CCHHHHHHHHSSCHHHHHHSCHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHCCCHHHHHHCcHHHHHHHHHHhCCC
Confidence 89999999999999999999999999999999998
No 7
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=46.23 E-value=11 Score=31.26 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=19.4
Q ss_pred cccCCChHHHHHHhCCCHHHHhh
Q psy17879 116 LERHLSDVEFETLFLCTRAEFYR 138 (154)
Q Consensus 116 lE~YLSDeDF~~VFGMsr~EF~~ 138 (154)
+-.--++|+..+.|||||..|-+
T Consensus 242 ~~DkS~pe~I~~~f~~SK~~FKr 264 (285)
T 3go5_A 242 LNDKSSPDDIKATFGISKGQFKK 264 (285)
T ss_dssp CCTTSCHHHHHHHHSSCHHHHHH
T ss_pred cCCCCCHHHHHHHhCcCHHHHHH
Confidence 44567899999999999999953
No 8
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=37.96 E-value=18 Score=28.10 Aligned_cols=34 Identities=15% Similarity=0.233 Sum_probs=25.5
Q ss_pred CCCCccccccCCChHHHHHHhCC--CHHHHhhChhHH
Q psy17879 109 PDVDRKNLERHLSDVEFETLFLC--TRAEFYRLPTWR 143 (154)
Q Consensus 109 ~gVDptklE~YLSDeDF~~VFGM--sr~EF~~LP~WK 143 (154)
.|||+.++=..|||+|.+++=.. ...+ +.+|.|=
T Consensus 50 ~gid~~~r~~~Lt~~ei~~l~~~i~~p~~-~~iP~w~ 85 (155)
T 2xzm_M 50 LKIDPNARAGLLTEDQCNKITDLIADPEA-HGIPTWL 85 (155)
T ss_dssp TTCCSSSCSSCSCHHHHHHHHHHHHSHHH-HCCCGGG
T ss_pred cCCCcccccccCCHHHHHHHHHHHhCccc-cCCCHHH
Confidence 58999999999999999887432 2222 2688883
No 9
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=37.88 E-value=3 Score=30.16 Aligned_cols=36 Identities=14% Similarity=0.105 Sum_probs=30.1
Q ss_pred CCccccccCCChHHHHHHhCCCHHHHhhChhHHHHH
Q psy17879 111 VDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRND 146 (154)
Q Consensus 111 VDptklE~YLSDeDF~~VFGMsr~EF~~LP~WKQ~~ 146 (154)
-||.++..-+.|+-+++|||..+-.|..||+.=..-
T Consensus 54 Qdp~~Kr~I~cD~kLk~lFg~~~v~~~~m~klL~~H 89 (101)
T 1v32_A 54 LDPSNKKKVVCDKRLVLLFGTRTIFRMKVYDLLEKH 89 (101)
T ss_dssp BCSSCTTEEECCSHHHHHTCCSEEETTHHHHHHHHH
T ss_pred cCcccCCeeeccHHHHHHHCCCcccHHHHHHHHHHH
Confidence 388889999999999999999988888888764443
No 10
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=37.39 E-value=9.3 Score=29.50 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=25.7
Q ss_pred CCCCccccccCCChHHHHHHhCCCHHHH-hhChhHH
Q psy17879 109 PDVDRKNLERHLSDVEFETLFLCTRAEF-YRLPTWR 143 (154)
Q Consensus 109 ~gVDptklE~YLSDeDF~~VFGMsr~EF-~~LP~WK 143 (154)
.|||+.++=..|||+|.+++=..=...+ +++|.|=
T Consensus 43 ~gid~~~r~g~Lt~~ei~~i~~~i~~~~~~~iP~w~ 78 (148)
T 3j20_O 43 AGLDPFMKAGYLTDEQVKKIEEILADPVAHGIPRWA 78 (148)
T ss_dssp HTCCSSSCTTBCCHHHHHHHHHHHHCHHHHCCCTTT
T ss_pred hCCCCCceeccCCHHHHHHHHHHHhcccccCCChhh
Confidence 4899999999999999998754311111 3588885
No 11
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1
Probab=36.86 E-value=5.8 Score=27.92 Aligned_cols=32 Identities=25% Similarity=0.363 Sum_probs=27.4
Q ss_pred CCccccccCCChHHHHHHhCCCHHHHhhChhH
Q psy17879 111 VDRKNLERHLSDVEFETLFLCTRAEFYRLPTW 142 (154)
Q Consensus 111 VDptklE~YLSDeDF~~VFGMsr~EF~~LP~W 142 (154)
.||.++..-+.|+-+++|||..+-.|..|++-
T Consensus 46 qdp~~k~~I~cD~~Lk~lfg~~~v~~~~~~kl 77 (93)
T 1uhr_A 46 QDPHEREFVLCDKYLQQIFESQRMKFSEIPQR 77 (93)
T ss_dssp BCSSCSSEECCCTTHHHHTCCSSEEGGGSHHH
T ss_pred CCccccceeechHHHHHHhCCCcccHHHHHHH
Confidence 47788889999999999999988888887753
No 12
>2p63_A Cell division control protein 4; ubiquitination, helix bundle, SCF complex, cell cycle; 2.67A {Saccharomyces cerevisiae}
Probab=34.41 E-value=20 Score=23.98 Aligned_cols=28 Identities=25% Similarity=0.339 Sum_probs=23.4
Q ss_pred HHHHHHhCCCHHHHhhChhHHHHHHhHh
Q psy17879 123 VEFETLFLCTRAEFYRLPTWRRNDLKKR 150 (154)
Q Consensus 123 eDF~~VFGMsr~EF~~LP~WKQ~~LKK~ 150 (154)
=-|+-|=+|+|.|-..|-.--++|||++
T Consensus 29 LiF~Lvs~m~RseLSDl~TlikDNLKRD 56 (56)
T 2p63_A 29 LLFRLVANMDRSELSDLGTLIKDNLKRD 56 (56)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhhccC
Confidence 3456667899999999999999999974
No 13
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=32.48 E-value=20 Score=22.78 Aligned_cols=23 Identities=4% Similarity=-0.198 Sum_probs=20.7
Q ss_pred ccCCChHHHHHHhCCCHHHHhhC
Q psy17879 117 ERHLSDVEFETLFLCTRAEFYRL 139 (154)
Q Consensus 117 E~YLSDeDF~~VFGMsr~EF~~L 139 (154)
+.+|+-.|..+.+|++|.-++++
T Consensus 8 ~~~l~~~eva~~lgvsrstiy~~ 30 (66)
T 1z4h_A 8 DSLVDLKFIMADTGFGKTFIYDR 30 (66)
T ss_dssp SSEECHHHHHHHHSSCHHHHHHH
T ss_pred ccccCHHHHHHHHCcCHHHHHHH
Confidence 46899999999999999999875
No 14
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=31.03 E-value=5.1 Score=28.12 Aligned_cols=32 Identities=9% Similarity=0.098 Sum_probs=26.8
Q ss_pred CCccccccCCChHHHHHHhCCCHHHHhhChhH
Q psy17879 111 VDRKNLERHLSDVEFETLFLCTRAEFYRLPTW 142 (154)
Q Consensus 111 VDptklE~YLSDeDF~~VFGMsr~EF~~LP~W 142 (154)
.||.++..-+.|+-+++|||..+-.|..|++-
T Consensus 46 qdp~~k~~I~cD~~L~~lfg~~~v~~~~~~kl 77 (93)
T 1v31_A 46 QNPNDPSFFNCDAALQKVFGEEKLKFTMVSQK 77 (93)
T ss_dssp BCSSCSSEEECCSHHHHHSCSSEEETTTTHHH
T ss_pred cCcccCceeehhHHHHHHhCCCcccHHHHHHH
Confidence 47777888999999999999988777777753
No 15
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=25.30 E-value=40 Score=22.21 Aligned_cols=16 Identities=13% Similarity=0.387 Sum_probs=12.5
Q ss_pred HHHHHHhCCCHHHHhh
Q psy17879 123 VEFETLFLCTRAEFYR 138 (154)
Q Consensus 123 eDF~~VFGMsr~EF~~ 138 (154)
..|++.|||+..+|.+
T Consensus 88 r~Fk~~~G~tP~~yRk 103 (103)
T 3lsg_A 88 TKFKKYYQITPKQYRE 103 (103)
T ss_dssp HHHHHHHSSCHHHHTC
T ss_pred HHHHHHHCcCHHHHhC
Confidence 4577888999999853
No 16
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=22.62 E-value=48 Score=22.04 Aligned_cols=16 Identities=13% Similarity=0.090 Sum_probs=13.1
Q ss_pred HHHHHHhCCCHHHHhh
Q psy17879 123 VEFETLFLCTRAEFYR 138 (154)
Q Consensus 123 eDF~~VFGMsr~EF~~ 138 (154)
..|++.|||+..+|.+
T Consensus 90 r~Fk~~~G~tP~~yR~ 105 (108)
T 3oou_A 90 RQFKKHTGETPNRYRK 105 (108)
T ss_dssp HHHHHHHSSCHHHHHH
T ss_pred HHHHHHhCcCHHHHHH
Confidence 4678889999999864
No 17
>1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A
Probab=21.58 E-value=57 Score=29.08 Aligned_cols=30 Identities=13% Similarity=0.210 Sum_probs=27.2
Q ss_pred cccCCChHHHHHHhCCCHHHHhhChhHHHH
Q psy17879 116 LERHLSDVEFETLFLCTRAEFYRLPTWRRN 145 (154)
Q Consensus 116 lE~YLSDeDF~~VFGMsr~EF~~LP~WKQ~ 145 (154)
-.+|||.+||.+.|+-+.++..+.-.|=+.
T Consensus 68 ygk~Lt~~e~~~~f~ps~~~v~~V~~wL~~ 97 (552)
T 1t1e_A 68 ARVHLEREAFAASHGASLDDFAEIRKFAEA 97 (552)
T ss_dssp SCCCCCHHHHHHHHSCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 457999999999999999999999999664
No 18
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=21.33 E-value=53 Score=21.75 Aligned_cols=16 Identities=13% Similarity=0.247 Sum_probs=12.9
Q ss_pred HHHHHHhCCCHHHHhh
Q psy17879 123 VEFETLFLCTRAEFYR 138 (154)
Q Consensus 123 eDF~~VFGMsr~EF~~ 138 (154)
..|++.|||+..+|.+
T Consensus 89 r~Fk~~~G~tP~~yr~ 104 (108)
T 3mn2_A 89 RDYRDMFGEKPSETLQ 104 (108)
T ss_dssp HHHHHHHSSCHHHHHH
T ss_pred HHHHHHHCcChHHHHH
Confidence 3678889999999854
No 19
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=21.18 E-value=54 Score=21.76 Aligned_cols=16 Identities=19% Similarity=0.141 Sum_probs=13.2
Q ss_pred HHHHHHhCCCHHHHhh
Q psy17879 123 VEFETLFLCTRAEFYR 138 (154)
Q Consensus 123 eDF~~VFGMsr~EF~~ 138 (154)
..|++.|||+..+|.+
T Consensus 89 r~Fk~~~G~tP~~yr~ 104 (107)
T 2k9s_A 89 RVFKKCTGASPSEFRA 104 (107)
T ss_dssp HHHHHHHSSCHHHHHH
T ss_pred HHHHHHHCcCHHHHHh
Confidence 3688899999999864
No 20
>4hlb_A Uncharacterized protein; alpha-lytic protease prodomain-like fold, structural genomic center for structural genomics, JCSG; 1.80A {Desulfovibrio piger}
Probab=21.09 E-value=53 Score=24.16 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=20.3
Q ss_pred CCCHHHHhhChhHHHHHHhHhcCC
Q psy17879 130 LCTRAEFYRLPTWRRNDLKKRARL 153 (154)
Q Consensus 130 GMsr~EF~~LP~WKQ~~LKK~~gL 153 (154)
+|+|.||.++..-.-.+||.+.|.
T Consensus 63 kmtraefsaiasrsirelkerfgf 86 (115)
T 4hlb_A 63 KMTRAEFSAIASRSIRELKERFGF 86 (115)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhHHHHHHHHHHHHHHHHHHhCC
Confidence 699999999988888888887763
No 21
>3mkb_A Hemoglobin subunit alpha; oxygen affinity, shortfin MAK storage, oxygen transport; HET: HEM; 1.90A {Isurus oxyrinchus} SCOP: a.1.1.2 PDB: 1gcv_A* 1gcw_A*
Probab=20.88 E-value=26 Score=25.50 Aligned_cols=19 Identities=32% Similarity=0.460 Sum_probs=15.3
Q ss_pred cccccCCcc-cccccccccC
Q psy17879 14 SLFNLHPQL-TLFSTFTVSN 32 (154)
Q Consensus 14 ~~~~~~~~~-~~~~~~~~s~ 32 (154)
.+|..||+. +.|+.+|++.
T Consensus 31 rlF~~~P~~k~~F~~~~~~~ 50 (140)
T 3mkb_A 31 RLFATHPGAKSYFDYADYSA 50 (140)
T ss_dssp HHHHHCGGGGGGCCCSCCST
T ss_pred HHHHHChHHHhhCccccCCC
Confidence 478999987 7788888775
Done!