RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17879
         (154 letters)



>d1ujsa_ a.14.1.1 (A:) Actin-binding LIM protein homologue KIAA0843
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 88

 Score = 99.5 bits (248), Expect = 8e-29
 Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 3/77 (3%)

Query: 81  PNMSQPMSLEPPKIYPYHLLIITNY---RLPPDVDRKNLERHLSDVEFETLFLCTRAEFY 137
              +    +   KIYPY LL++T     RLP DVDR  LERHLS  EF  +F  T +EF 
Sbjct: 6   SGNAVNWGMREYKIYPYELLLVTTRGRNRLPKDVDRTRLERHLSQEEFYQVFGMTISEFD 65

Query: 138 RLPTWRRNDLKKRARLF 154
           RL  W+RN+LKK+ARLF
Sbjct: 66  RLALWKRNELKKQARLF 82


>d1qzpa_ a.14.1.1 (A:) Dematin {Human (Homo sapiens) [TaxId: 9606]}
          Length = 68

 Score = 96.3 bits (240), Expect = 7e-28
 Identities = 33/65 (50%), Positives = 45/65 (69%), Gaps = 3/65 (4%)

Query: 93  KIYPYHLLIITN---YRLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKK 149
           +IYPY +L++TN    +LPP VDR  LERHLS  +F  +F  +  EF +L  W+RN+LKK
Sbjct: 4   QIYPYEMLVVTNKGRTKLPPGVDRMRLERHLSAEDFSRVFAMSPEEFGKLALWKRNELKK 63

Query: 150 RARLF 154
           +A LF
Sbjct: 64  KASLF 68


>d1yu5x1 a.14.1.1 (X:10-76) Villin {Chicken (Gallus gallus) [TaxId:
           9031]}
          Length = 67

 Score = 91.7 bits (228), Expect = 4e-26
 Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 93  KIYPYHLLIITNYR-LPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKKRA 151
           + +P  +L+ T    LP  VD    E HLSD +F+ +F  TR+ F  LP W++ +LKK  
Sbjct: 5   ETFPLDVLVNTAAEDLPRGVDPSRKENHLSDEDFKAVFGMTRSAFANLPLWKQQNLKKEK 64

Query: 152 RLF 154
            LF
Sbjct: 65  GLF 67


>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
          Length = 36

 Score = 63.1 bits (154), Expect = 3e-15
 Identities = 14/36 (38%), Positives = 23/36 (63%)

Query: 119 HLSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF 154
           +LS+ +F ++F  TR +F  LP W++  +KK   LF
Sbjct: 1   YLSEQDFVSVFGITRGQFAALPGWKQLQMKKEKGLF 36


>d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId:
           9031]}
          Length = 35

 Score = 62.8 bits (153), Expect = 5e-15
 Identities = 16/35 (45%), Positives = 23/35 (65%)

Query: 120 LSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF 154
           LSD +F+ +F  TR+ F  LP W++ +LKK   LF
Sbjct: 1   LSDEDFKAVFGMTRSAFANLPLWKQQNLKKEKGLF 35


>d1yw4a1 c.56.5.7 (A:2-332) Succinylglutamate desuccinylase AstE
           {Chromobacterium violaceum [TaxId: 536]}
          Length = 331

 Score = 25.4 bits (55), Expect = 3.8
 Identities = 10/58 (17%), Positives = 13/58 (22%)

Query: 18  LHPQLTLFSTFTVSNGSIYDLHSNIHPHHHVPNGGAPELPVSSTYAGSLGYAASYSNH 75
           L      F     +    YDLH+ I           P L    T+             
Sbjct: 127 LETLAAEFFAGARARKLHYDLHTAIRGSVFEKFAIYPFLHDGRTHKREQLAWLQRCGI 184


>d2eg6a1 c.1.9.4 (A:4-346) Dihydroorotase {Escherichia coli [TaxId:
           562]}
          Length = 343

 Score = 24.6 bits (52), Expect = 6.6
 Identities = 14/84 (16%), Positives = 23/84 (27%), Gaps = 5/84 (5%)

Query: 35  IYDLHSNIHPHHHVPNGGAPELPVSSTYAGSLGYAASYSNHIQRSLPNMSQPMSLEPPKI 94
                S  H  H   +        ++  A    YA  +      +L +     S+  P+ 
Sbjct: 243 FLGTDSAPHARHRKESSCGCAGCFNAPTALGS-YATVFEEMN--ALQHFEAFCSVNGPQF 299

Query: 95  Y--PYHLLIITNYRLPPDVDRKNL 116
           Y  P +   I   R    V     
Sbjct: 300 YGLPVNDTFIELVREEQQVAESIA 323


>d2q5ba1 b.6.1.1 (A:1-105) Plastocyanin {Cyanobacterium
          (Phormidium laminosum) [TaxId: 32059]}
          Length = 105

 Score = 23.7 bits (50), Expect = 7.1
 Identities = 13/73 (17%), Positives = 22/73 (30%), Gaps = 3/73 (4%)

Query: 26 STFTVSNGSIYDLHSNIHPHHHVPNGGAPELPVSSTYAGSLGYAASYSNHIQRSLPNMSQ 85
          +  TV  G      +N  P H++          S   A  L ++    +  +      S 
Sbjct: 19 ANVTVHPGDTVKWVNNKLPPHNILFDDKQVPGASKELADKLSHSQLMFSPGESYEITFSS 78

Query: 86 PMSLEPPKIYPYH 98
               P   Y Y+
Sbjct: 79 D---FPAGTYTYY 88


>d1j6ra_ d.173.1.2 (A:) Hypothetical protein TM0269 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 197

 Score = 24.0 bits (52), Expect = 7.8
 Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 4/33 (12%)

Query: 100 LIITNYRLPPDVDRKNLERHLSDVEFETLFLCT 132
           L   + RL      +   +HLS  +  T+FL T
Sbjct: 66  LSFDDMRLT----GELATKHLSGSKIITVFLAT 94


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.138    0.426 

Gapped
Lambda     K      H
   0.267   0.0471    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 605,057
Number of extensions: 26531
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 13
Length of query: 154
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 76
Effective length of database: 1,336,656
Effective search space: 101585856
Effective search space used: 101585856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.3 bits)