Query psy17880
Match_columns 120
No_of_seqs 182 out of 1302
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 16:31:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17880.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17880hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xqn_T Testin, TESS; metal-bin 100.0 9.8E-36 3.4E-40 187.6 8.9 119 2-120 2-125 (126)
2 2xjy_A Rhombotin-2; oncoprotei 100.0 6.4E-35 2.2E-39 185.0 8.9 118 2-119 1-126 (131)
3 1rut_X Flinc4, fusion protein 100.0 8.8E-33 3E-37 184.8 9.8 119 2-120 4-130 (188)
4 1b8t_A Protein (CRP1); LIM dom 100.0 1.2E-32 4E-37 184.7 7.9 118 3-120 7-174 (192)
5 2rgt_A Fusion of LIM/homeobox 100.0 8.6E-32 2.9E-36 177.3 7.2 116 2-118 5-125 (169)
6 2jtn_A LIM domain-binding prot 100.0 3.3E-31 1.1E-35 176.3 7.2 115 3-118 60-179 (182)
7 2cup_A Skeletal muscle LIM-pro 100.0 1.2E-29 4.2E-34 154.1 6.7 94 2-95 4-101 (101)
8 1m3v_A FLIN4, fusion of the LI 99.9 9.9E-27 3.4E-31 145.7 4.9 106 2-120 4-114 (122)
9 1j2o_A FLIN2, fusion of rhombo 99.9 8.7E-24 3E-28 130.9 6.0 100 2-119 2-105 (114)
10 2ehe_A Four and A half LIM dom 99.9 3.6E-23 1.2E-27 121.1 2.5 73 48-120 1-75 (82)
11 2cuq_A Four and A half LIM dom 99.9 2.8E-23 9.6E-28 121.0 0.1 73 48-120 1-73 (80)
12 1x3h_A Leupaxin; paxillin fami 99.8 3.6E-23 1.2E-27 120.5 -0.5 72 48-119 1-72 (80)
13 2egq_A FHL1 protein; LIM domai 99.8 1E-22 3.6E-27 117.7 1.1 71 48-118 1-76 (77)
14 1x63_A Skeletal muscle LIM-pro 99.8 1.5E-22 5.2E-27 118.4 1.0 73 48-120 1-75 (82)
15 2dlo_A Thyroid receptor-intera 99.8 2.7E-22 9.1E-27 117.1 0.7 72 48-120 2-74 (81)
16 1x6a_A LIMK-2, LIM domain kina 99.8 5.8E-22 2E-26 115.7 -1.3 72 48-119 1-74 (81)
17 1iml_A CRIP, cysteine rich int 99.8 4.1E-20 1.4E-24 106.5 5.9 70 4-73 1-72 (76)
18 1v6g_A Actin binding LIM prote 99.8 1.2E-20 4.1E-25 110.1 2.2 71 49-119 2-73 (81)
19 2cur_A Skeletal muscle LIM-pro 99.8 2.2E-19 7.6E-24 101.6 6.1 66 2-67 4-69 (69)
20 2d8z_A Four and A half LIM dom 99.8 3.1E-19 1.1E-23 101.2 5.9 66 2-67 4-69 (70)
21 2dar_A PDZ and LIM domain prot 99.8 6E-19 2E-23 104.8 6.5 66 2-67 24-89 (90)
22 1x68_A FHL5 protein; four-and- 99.8 1.9E-19 6.5E-24 103.8 4.0 68 2-69 4-75 (76)
23 1x68_A FHL5 protein; four-and- 99.8 6.1E-19 2.1E-23 101.6 5.9 62 59-120 2-67 (76)
24 1a7i_A QCRP2 (LIM1); LIM domai 99.8 2.7E-19 9.1E-24 104.3 4.3 70 3-72 7-77 (81)
25 1x3h_A Leupaxin; paxillin fami 99.8 1E-18 3.5E-23 101.5 6.3 66 2-67 14-79 (80)
26 1wyh_A SLIM 2, skeletal muscle 99.8 9.6E-19 3.3E-23 99.7 5.7 66 2-67 4-71 (72)
27 1nyp_A Pinch protein; LIM doma 99.8 7.3E-19 2.5E-23 98.6 4.8 63 2-64 4-66 (66)
28 1x4k_A Skeletal muscle LIM-pro 99.8 1.5E-18 5.1E-23 98.9 6.2 66 2-67 4-71 (72)
29 2cu8_A Cysteine-rich protein 2 99.8 1.5E-18 5E-23 100.0 5.8 66 2-67 8-75 (76)
30 2dlo_A Thyroid receptor-intera 99.7 2.3E-18 7.9E-23 100.3 5.9 66 2-67 14-80 (81)
31 2cuq_A Four and A half LIM dom 99.7 2.4E-18 8.3E-23 99.9 5.7 65 3-67 15-79 (80)
32 2dj7_A Actin-binding LIM prote 99.7 2.3E-18 8E-23 100.2 5.6 64 3-67 15-79 (80)
33 2d8x_A Protein pinch; LIM doma 99.7 6.5E-18 2.2E-22 95.7 6.2 63 3-65 5-67 (70)
34 1nyp_A Pinch protein; LIM doma 99.7 2.5E-19 8.5E-24 100.6 0.2 61 60-120 3-63 (66)
35 1g47_A Pinch protein; LIM doma 99.7 3.1E-18 1E-22 98.7 4.8 65 2-66 10-76 (77)
36 1x4l_A Skeletal muscle LIM-pro 99.7 2.8E-18 9.5E-23 97.8 4.5 63 3-65 5-71 (72)
37 1x64_A Alpha-actinin-2 associa 99.7 6.9E-18 2.4E-22 99.9 5.4 64 3-66 25-88 (89)
38 1wig_A KIAA1808 protein; LIM d 99.7 1.1E-18 3.9E-23 99.8 1.7 60 60-119 3-63 (73)
39 1x62_A C-terminal LIM domain p 99.7 3.5E-18 1.2E-22 99.1 3.7 64 3-66 15-78 (79)
40 1x4k_A Skeletal muscle LIM-pro 99.7 2.4E-18 8.2E-23 98.0 2.5 61 60-120 3-65 (72)
41 2ehe_A Four and A half LIM dom 99.7 2.7E-18 9.3E-23 100.2 2.5 65 3-67 15-81 (82)
42 2d8z_A Four and A half LIM dom 99.7 1.3E-18 4.4E-23 98.6 1.0 60 61-120 4-63 (70)
43 2dar_A PDZ and LIM domain prot 99.7 1.7E-18 5.9E-23 102.7 1.6 64 57-120 20-83 (90)
44 2cor_A Pinch protein; LIM doma 99.7 9.8E-18 3.4E-22 97.2 4.7 64 2-66 14-77 (79)
45 1x63_A Skeletal muscle LIM-pro 99.7 2E-17 7E-22 96.4 6.1 64 3-66 15-80 (82)
46 2cur_A Skeletal muscle LIM-pro 99.7 1.6E-18 5.5E-23 98.0 1.1 59 61-119 4-62 (69)
47 1x4l_A Skeletal muscle LIM-pro 99.7 2.8E-18 9.5E-23 97.8 2.1 60 61-120 4-67 (72)
48 1wyh_A SLIM 2, skeletal muscle 99.7 2E-18 6.8E-23 98.3 1.5 61 60-120 3-65 (72)
49 2d8x_A Protein pinch; LIM doma 99.7 2.5E-18 8.6E-23 97.5 1.9 58 62-119 5-62 (70)
50 2d8y_A Eplin protein; LIM doma 99.7 4.2E-17 1.4E-21 96.9 5.8 66 3-68 15-81 (91)
51 1wig_A KIAA1808 protein; LIM d 99.7 2.2E-17 7.6E-22 94.4 4.0 62 2-63 4-66 (73)
52 1x61_A Thyroid receptor intera 99.7 4.9E-17 1.7E-21 92.5 5.3 65 2-67 4-70 (72)
53 2cu8_A Cysteine-rich protein 2 99.7 1.7E-17 5.9E-22 95.4 3.3 60 61-120 8-69 (76)
54 2iyb_E Testin, TESS, TES; LIM 99.7 1.9E-17 6.5E-22 92.6 2.7 57 61-117 1-62 (65)
55 1b8t_A Protein (CRP1); LIM dom 99.7 7.9E-17 2.7E-21 107.6 6.0 69 4-72 116-185 (192)
56 2cor_A Pinch protein; LIM doma 99.7 1.1E-17 3.8E-22 97.0 1.5 58 62-120 15-72 (79)
57 3f6q_B LIM and senescent cell 99.7 7.8E-18 2.7E-22 95.7 0.7 61 60-120 9-71 (72)
58 1iml_A CRIP, cysteine rich int 99.7 3.5E-17 1.2E-21 94.1 3.4 58 63-120 1-60 (76)
59 1x61_A Thyroid receptor intera 99.7 1.2E-17 4.2E-22 95.0 1.1 59 61-119 4-64 (72)
60 1x64_A Alpha-actinin-2 associa 99.7 1.9E-17 6.7E-22 98.0 2.0 59 62-120 25-83 (89)
61 2dj7_A Actin-binding LIM prote 99.7 3.5E-17 1.2E-21 95.1 3.0 57 63-120 16-73 (80)
62 3f6q_B LIM and senescent cell 99.7 1.2E-16 4.1E-21 90.7 4.9 61 2-62 10-72 (72)
63 1x6a_A LIMK-2, LIM domain kina 99.6 1.6E-16 5.4E-21 92.4 5.3 64 3-66 15-80 (81)
64 2co8_A NEDD9 interacting prote 99.6 8E-17 2.8E-21 94.0 3.7 59 62-120 15-76 (82)
65 1x62_A C-terminal LIM domain p 99.6 5.4E-18 1.8E-22 98.3 -1.3 58 62-119 15-72 (79)
66 1g47_A Pinch protein; LIM doma 99.6 2.6E-17 9E-22 94.8 1.6 60 61-120 10-71 (77)
67 1a7i_A QCRP2 (LIM1); LIM domai 99.6 4.4E-17 1.5E-21 94.8 2.3 59 62-120 7-66 (81)
68 2egq_A FHL1 protein; LIM domai 99.6 2.2E-16 7.5E-21 90.9 4.9 57 3-59 15-76 (77)
69 2iyb_E Testin, TESS, TES; LIM 99.6 2E-16 6.9E-21 88.4 4.2 58 3-60 2-64 (65)
70 2cup_A Skeletal muscle LIM-pro 99.6 1.6E-16 5.4E-21 95.9 3.6 60 61-120 4-65 (101)
71 2l3k_A Rhombotin-2, linker, LI 99.6 3.9E-16 1.3E-20 97.5 5.4 71 4-74 9-82 (123)
72 2l4z_A DNA endonuclease RBBP8, 99.6 4.7E-16 1.6E-20 97.2 5.2 60 3-62 61-123 (123)
73 2xqn_T Testin, TESS; metal-bin 99.6 2E-16 6.8E-21 99.1 3.2 60 61-120 2-62 (126)
74 2l4z_A DNA endonuclease RBBP8, 99.6 1.2E-16 4.2E-21 99.9 1.2 60 61-120 60-122 (123)
75 2d8y_A Eplin protein; LIM doma 99.6 1.8E-16 6.2E-21 94.1 1.4 59 62-120 15-74 (91)
76 2co8_A NEDD9 interacting prote 99.6 2.8E-16 9.6E-21 91.7 2.1 63 3-65 15-80 (82)
77 2l3k_A Rhombotin-2, linker, LI 99.6 1.3E-16 4.5E-21 99.7 -0.2 62 57-118 1-67 (123)
78 1j2o_A FLIN2, fusion of rhombo 99.6 2.3E-16 7.9E-21 97.3 0.8 59 62-120 3-64 (114)
79 1m3v_A FLIN4, fusion of the LI 99.5 3.7E-16 1.3E-20 97.5 -0.6 59 61-119 4-65 (122)
80 2xjy_A Rhombotin-2; oncoprotei 99.5 3.4E-15 1.2E-19 93.9 2.3 57 63-119 3-62 (131)
81 1v6g_A Actin binding LIM prote 99.5 9.4E-15 3.2E-19 84.8 3.4 59 3-61 15-74 (81)
82 2jtn_A LIM domain-binding prot 99.5 5E-15 1.7E-19 98.1 1.2 72 48-120 43-118 (182)
83 1rut_X Flinc4, fusion protein 99.4 9.4E-15 3.2E-19 97.3 0.7 59 61-119 4-65 (188)
84 2rgt_A Fusion of LIM/homeobox 99.4 4.1E-14 1.4E-18 92.7 0.9 57 62-119 6-63 (169)
85 1zfo_A LAsp-1; LIM domain, zin 98.1 7.4E-07 2.5E-11 42.0 1.1 29 2-30 2-31 (31)
86 1zfo_A LAsp-1; LIM domain, zin 98.0 8.6E-07 3E-11 41.8 0.5 28 62-89 3-31 (31)
87 4ap4_A E3 ubiquitin ligase RNF 94.2 0.012 4E-07 35.8 0.7 90 4-102 8-127 (133)
88 2jrp_A Putative cytoplasmic pr 90.2 0.26 8.9E-06 27.9 2.8 65 2-102 1-65 (81)
89 1t1h_A Gspef-atpub14, armadill 88.7 0.81 2.8E-05 24.9 4.2 46 28-74 7-55 (78)
90 2ecy_A TNF receptor-associated 88.6 0.66 2.3E-05 24.4 3.7 46 28-74 14-62 (66)
91 2djb_A Polycomb group ring fin 87.8 0.94 3.2E-05 24.3 4.0 46 28-74 14-62 (72)
92 1jjd_A Metallothionein, SMTA; 85.5 0.43 1.5E-05 25.0 1.7 24 90-113 9-32 (55)
93 2xeu_A Ring finger protein 4; 85.5 0.29 9.9E-06 25.5 1.1 45 30-74 4-56 (64)
94 2ysl_A Tripartite motif-contai 83.8 1.3 4.4E-05 23.6 3.3 44 29-73 20-68 (73)
95 3ng2_A RNF4, snurf, ring finge 83.5 0.2 7E-06 26.8 -0.2 44 30-73 11-62 (71)
96 1jm7_B BARD1, BRCA1-associated 81.8 0.97 3.3E-05 26.8 2.4 45 28-73 21-66 (117)
97 3vk6_A E3 ubiquitin-protein li 81.6 1.6 5.5E-05 25.7 3.2 42 32-73 4-48 (101)
98 1g25_A CDK-activating kinase a 81.5 1.8 6.2E-05 22.5 3.3 45 30-74 4-55 (65)
99 2ecm_A Ring finger and CHY zin 81.4 1.8 6.1E-05 21.6 3.1 43 31-73 7-54 (55)
100 2kwj_A Zinc finger protein DPF 81.3 0.6 2.1E-05 27.9 1.4 75 4-90 2-89 (114)
101 2csy_A Zinc finger protein 183 81.1 1.8 6.1E-05 23.7 3.3 44 29-73 15-60 (81)
102 4ayc_A E3 ubiquitin-protein li 80.7 2.3 7.8E-05 26.0 4.0 44 30-74 54-99 (138)
103 2y43_A E3 ubiquitin-protein li 80.6 1.7 5.9E-05 24.8 3.2 44 29-73 22-68 (99)
104 2kre_A Ubiquitin conjugation f 80.4 2.5 8.4E-05 24.5 3.8 48 26-74 26-75 (100)
105 1chc_A Equine herpes virus-1 r 80.4 2.2 7.5E-05 22.3 3.4 43 31-73 7-51 (68)
106 4ap4_A E3 ubiquitin ligase RNF 79.7 2.1 7.1E-05 25.4 3.5 71 3-75 48-126 (133)
107 2ecv_A Tripartite motif-contai 79.5 2.5 8.5E-05 23.0 3.5 44 29-73 19-70 (85)
108 2ecw_A Tripartite motif-contai 79.4 2.1 7.3E-05 23.3 3.2 44 29-73 19-70 (85)
109 2ea6_A Ring finger protein 4; 79.3 0.4 1.4E-05 25.3 0.1 44 29-72 15-66 (69)
110 4gne_A Histone-lysine N-methyl 79.2 3.7 0.00013 24.3 4.4 79 5-118 17-105 (107)
111 2jne_A Hypothetical protein YF 79.0 1.1 3.6E-05 26.3 1.8 62 30-102 33-95 (101)
112 2gvi_A Conserved hypothetical 78.9 0.7 2.4E-05 30.6 1.2 31 29-59 172-202 (204)
113 2yur_A Retinoblastoma-binding 77.7 1.1 3.8E-05 24.2 1.6 44 28-72 14-62 (74)
114 2kr4_A Ubiquitin conjugation f 77.5 3.7 0.00013 22.9 3.9 47 27-74 12-60 (85)
115 2d8t_A Dactylidin, ring finger 77.2 3 0.0001 22.1 3.3 44 29-73 15-60 (71)
116 1jm7_A BRCA1, breast cancer ty 77.1 2.6 8.7E-05 24.4 3.2 45 29-74 21-70 (112)
117 1e4u_A Transcriptional repress 77.0 3.8 0.00013 22.6 3.8 45 30-74 12-62 (78)
118 2ckl_A Polycomb group ring fin 77.0 2.7 9.1E-05 24.4 3.3 44 29-73 15-61 (108)
119 3hcs_A TNF receptor-associated 75.8 3.4 0.00012 26.0 3.8 46 28-74 17-65 (170)
120 1wgm_A Ubiquitin conjugation f 75.6 4.4 0.00015 23.3 3.9 47 27-74 20-69 (98)
121 3ztg_A E3 ubiquitin-protein li 75.5 3.4 0.00011 23.1 3.4 44 28-72 12-60 (92)
122 1rmd_A RAG1; V(D)J recombinati 75.4 3.9 0.00013 24.0 3.7 45 29-74 23-70 (116)
123 2ecl_A Ring-box protein 2; RNF 75.1 1.8 6E-05 23.9 2.0 21 80-100 48-76 (81)
124 4ayc_A E3 ubiquitin-protein li 75.1 1.1 3.8E-05 27.4 1.2 39 63-101 54-100 (138)
125 3l11_A E3 ubiquitin-protein li 74.7 2.2 7.6E-05 25.0 2.5 45 28-73 14-61 (115)
126 2ecn_A Ring finger protein 141 74.0 0.52 1.8E-05 25.1 -0.4 28 30-59 16-43 (70)
127 3fl2_A E3 ubiquitin-protein li 73.9 1.1 3.9E-05 26.7 1.1 44 29-73 52-98 (124)
128 1weo_A Cellulose synthase, cat 73.4 4.9 0.00017 23.1 3.5 24 49-72 42-68 (93)
129 3hct_A TNF receptor-associated 73.2 1.1 3.6E-05 26.7 0.8 46 28-74 17-65 (118)
130 3fl2_A E3 ubiquitin-protein li 72.9 3.8 0.00013 24.3 3.3 38 63-100 53-99 (124)
131 3vk6_A E3 ubiquitin-protein li 72.7 1.5 5.2E-05 25.8 1.3 50 64-113 3-62 (101)
132 2ckl_B Ubiquitin ligase protei 72.2 3.5 0.00012 25.9 3.1 45 28-73 53-101 (165)
133 2egp_A Tripartite motif-contai 71.8 2.2 7.5E-05 23.0 1.9 43 29-72 12-63 (79)
134 3lrq_A E3 ubiquitin-protein li 70.1 3.7 0.00013 23.5 2.7 44 29-73 22-69 (100)
135 1bor_A Transcription factor PM 69.5 1.8 6.3E-05 22.0 1.1 41 30-72 7-47 (56)
136 2ct2_A Tripartite motif protei 69.4 5.4 0.00019 21.8 3.3 45 29-73 15-67 (88)
137 2ysm_A Myeloid/lymphoid or mix 69.0 4.1 0.00014 23.9 2.8 72 4-90 8-85 (111)
138 1z6u_A NP95-like ring finger p 68.2 5.3 0.00018 24.8 3.3 43 30-73 79-124 (150)
139 2f42_A STIP1 homology and U-bo 67.4 7.6 0.00026 25.1 4.0 47 27-74 104-153 (179)
140 2c2l_A CHIP, carboxy terminus 67.3 5.7 0.0002 26.7 3.6 48 26-74 205-255 (281)
141 2ecg_A Baculoviral IAP repeat- 67.2 5.8 0.0002 21.3 3.0 42 30-74 26-68 (75)
142 1z6u_A NP95-like ring finger p 66.5 2 6.8E-05 26.8 1.0 39 63-101 79-126 (150)
143 4ic3_A E3 ubiquitin-protein li 65.9 6.1 0.00021 21.2 2.9 42 30-74 25-67 (74)
144 2ecj_A Tripartite motif-contai 65.9 8.9 0.0003 19.0 3.4 30 30-60 16-45 (58)
145 1x4j_A Ring finger protein 38; 65.7 1.7 5.6E-05 23.5 0.5 43 30-72 24-70 (75)
146 2ep4_A Ring finger protein 24; 64.5 12 0.00042 19.6 4.0 44 30-73 16-63 (74)
147 2ect_A Ring finger protein 126 61.7 7.8 0.00027 20.7 2.9 44 30-73 16-63 (78)
148 1iym_A EL5; ring-H2 finger, ub 61.6 9.6 0.00033 18.7 3.0 24 49-72 28-53 (55)
149 2ysj_A Tripartite motif-contai 60.9 8.3 0.00028 19.7 2.8 32 29-61 20-51 (63)
150 2eqg_A Tumor necrosis factor, 59.2 4.6 0.00016 19.9 1.3 18 44-61 22-39 (49)
151 2kiz_A E3 ubiquitin-protein li 57.6 15 0.00051 19.0 3.5 44 30-73 15-62 (69)
152 2e5r_A Dystrobrevin alpha; ZZ 55.8 10 0.00035 20.0 2.5 38 21-60 5-45 (63)
153 2vnf_A ING 4, P29ING4, inhibit 55.8 12 0.00041 19.4 2.8 43 5-59 12-59 (60)
154 2gvi_A Conserved hypothetical 55.4 2.1 7.3E-05 28.2 -0.3 29 89-117 173-201 (204)
155 3c6w_A P28ING5, inhibitor of g 55.3 9.9 0.00034 19.7 2.4 42 5-58 11-57 (59)
156 2ct0_A Non-SMC element 1 homol 54.5 3.6 0.00012 22.6 0.6 9 81-89 35-43 (74)
157 3knv_A TNF receptor-associated 53.4 2.4 8E-05 26.2 -0.3 44 28-72 30-76 (141)
158 2yu4_A E3 SUMO-protein ligase 52.2 16 0.00055 20.5 3.2 45 28-73 6-62 (94)
159 2dmj_A Poly (ADP-ribose) polym 50.7 4.9 0.00017 23.6 0.8 12 3-14 25-36 (106)
160 2l0b_A E3 ubiquitin-protein li 49.5 24 0.00082 19.5 3.7 44 30-73 41-88 (91)
161 1wfh_A Zinc finger (AN1-like) 49.0 14 0.00046 19.8 2.3 10 63-72 16-25 (64)
162 1v9x_A Poly (ADP-ribose) polym 48.9 5.4 0.00019 23.9 0.8 13 3-15 20-32 (114)
163 2das_A Zinc finger MYM-type pr 48.1 12 0.0004 19.8 1.9 13 90-102 22-34 (62)
164 2g6q_A Inhibitor of growth pro 47.8 15 0.00052 19.2 2.4 42 5-58 13-59 (62)
165 1wg2_A Zinc finger (AN1-like) 47.4 14 0.00049 19.7 2.2 10 63-72 16-25 (64)
166 2d8v_A Zinc finger FYVE domain 46.6 6.6 0.00023 21.2 0.8 30 31-61 10-39 (67)
167 3nw0_A Non-structural maintena 45.1 10 0.00034 25.6 1.7 39 63-101 181-230 (238)
168 3od8_A Poly [ADP-ribose] polym 45.0 7.6 0.00026 23.3 1.0 12 3-14 38-49 (116)
169 3odc_A Poly [ADP-ribose] polym 44.6 5.9 0.0002 23.6 0.5 12 3-14 19-30 (111)
170 2cs3_A Protein C14ORF4, MY039 44.2 9 0.00031 21.6 1.1 29 5-33 17-46 (93)
171 2bay_A PRE-mRNA splicing facto 44.0 33 0.0011 17.6 3.5 44 30-74 4-50 (61)
172 2ku3_A Bromodomain-containing 43.7 24 0.00083 19.0 2.9 48 4-62 17-69 (71)
173 1wfp_A Zinc finger (AN1-like) 43.3 18 0.00061 19.9 2.2 10 63-72 26-35 (74)
174 1twf_L ABC10-alpha, DNA-direct 43.3 8.5 0.00029 20.9 0.9 9 64-72 30-38 (70)
175 2lo3_A SAGA-associated factor 42.9 5.9 0.0002 19.4 0.2 11 4-14 18-28 (44)
176 2vje_B MDM4 protein; proto-onc 41.2 37 0.0013 17.4 3.5 28 47-74 26-56 (63)
177 2vpb_A Hpygo1, pygopus homolog 41.2 11 0.00038 20.0 1.2 26 4-29 9-39 (65)
178 1znf_A 31ST zinc finger from X 40.5 13 0.00045 14.4 1.2 12 89-100 2-13 (27)
179 1paa_A Yeast transcription fac 40.4 13 0.00043 14.9 1.2 13 89-101 3-15 (30)
180 3dpl_R Ring-box protein 1; ubi 39.9 14 0.00047 21.6 1.6 19 80-98 73-99 (106)
181 1ard_A Yeast transcription fac 38.3 14 0.00049 14.5 1.2 13 89-101 3-15 (29)
182 3gox_A Restriction endonucleas 38.3 6.7 0.00023 25.8 0.0 69 30-98 76-178 (200)
183 2m0e_A Zinc finger and BTB dom 38.0 16 0.00054 14.2 1.3 13 89-101 3-15 (29)
184 1klr_A Zinc finger Y-chromosom 36.8 16 0.00055 14.4 1.2 13 89-101 3-15 (30)
185 1uw0_A DNA ligase III; DNA rep 36.6 11 0.00036 22.6 0.7 12 3-14 15-26 (117)
186 1wfl_A Zinc finger protein 216 36.3 19 0.00064 19.8 1.6 10 63-72 26-35 (74)
187 2yho_A E3 ubiquitin-protein li 36.0 32 0.0011 18.6 2.7 42 31-75 20-62 (79)
188 2kvh_A Zinc finger and BTB dom 34.8 12 0.0004 14.7 0.6 12 89-100 4-15 (27)
189 2lvu_A Zinc finger and BTB dom 41.0 8.2 0.00028 15.0 0.0 13 89-101 3-15 (26)
190 1rik_A E6APC1 peptide; E6-bind 33.4 13 0.00045 14.7 0.6 13 89-101 3-15 (29)
191 1k81_A EIF-2-beta, probable tr 33.0 27 0.00092 16.2 1.7 24 64-89 2-25 (36)
192 2d8s_A Cellular modulator of i 32.9 29 0.001 19.0 2.1 19 82-100 42-70 (80)
193 2kvf_A Zinc finger and BTB dom 31.5 15 0.0005 14.4 0.6 12 89-100 4-15 (28)
194 2jny_A Uncharacterized BCR; st 30.9 35 0.0012 18.3 2.1 10 63-72 11-20 (67)
195 2m0f_A Zinc finger and BTB dom 30.9 15 0.00051 14.3 0.6 12 89-100 3-14 (29)
196 2ea5_A Cell growth regulator w 30.8 61 0.0021 16.9 3.8 43 30-75 16-59 (68)
197 2vut_I AREA, nitrogen regulato 30.6 47 0.0016 16.1 2.4 29 31-59 3-31 (43)
198 1v87_A Deltex protein 2; ring- 30.5 64 0.0022 18.3 3.5 43 30-72 26-92 (114)
199 3d00_A Tungsten formylmethanof 29.8 6 0.00021 25.8 -1.3 28 87-120 162-189 (191)
200 2lvr_A Zinc finger and BTB dom 35.7 11 0.00039 15.0 0.0 13 89-101 4-16 (30)
201 2e6s_A E3 ubiquitin-protein li 29.4 17 0.00058 20.0 0.7 27 64-90 28-57 (77)
202 2jr6_A UPF0434 protein NMA0874 29.3 39 0.0013 18.1 2.2 9 64-72 10-18 (68)
203 3htk_C E3 SUMO-protein ligase 29.2 44 0.0015 23.1 2.9 45 28-73 180-231 (267)
204 2hf1_A Tetraacyldisaccharide-1 29.1 39 0.0013 18.1 2.1 9 64-72 10-18 (68)
205 2y1n_A E3 ubiquitin-protein li 28.9 58 0.002 23.7 3.6 44 30-74 333-379 (389)
206 2m0d_A Zinc finger and BTB dom 28.8 17 0.00057 14.3 0.5 12 89-100 4-15 (30)
207 2lbz_A Thuricin17, thurincin H 27.5 25 0.00084 15.3 0.9 12 28-39 6-17 (31)
208 1p7a_A BF3, BKLF, kruppel-like 27.4 26 0.00088 14.8 1.1 13 88-100 11-23 (37)
209 2lvt_A Zinc finger and BTB dom 33.4 13 0.00044 14.8 0.0 13 89-101 3-15 (29)
210 2elr_A Zinc finger protein 406 27.3 27 0.00093 14.6 1.2 13 89-101 10-22 (36)
211 4av1_A Poly [ADP-ribose] polym 27.1 13 0.00045 24.9 0.0 30 3-32 39-80 (223)
212 2yql_A PHD finger protein 21A; 27.1 32 0.0011 17.3 1.5 26 4-31 10-37 (56)
213 2cs2_A Poly [ADP-ribose] polym 26.9 17 0.00059 22.3 0.5 12 3-14 27-38 (134)
214 2k16_A Transcription initiatio 26.8 49 0.0017 17.6 2.4 47 5-60 20-69 (75)
215 1rim_A E6APC2 peptide; E6-bind 26.8 28 0.00096 14.5 1.1 13 89-101 3-15 (33)
216 2js4_A UPF0434 protein BB2007; 26.7 38 0.0013 18.2 1.8 10 63-72 9-18 (70)
217 2puy_A PHD finger protein 21A; 26.3 46 0.0016 16.9 2.1 48 3-61 5-54 (60)
218 2kvg_A Zinc finger and BTB dom 25.9 15 0.00053 14.4 0.1 12 89-100 4-15 (27)
219 2hqh_E Restin; beta/BETA struc 25.5 22 0.00076 15.4 0.6 9 108-116 2-10 (26)
220 2xzf_A Formamidopyrimidine-DNA 25.5 12 0.00039 25.8 -0.5 12 62-73 242-253 (271)
221 1wff_A Riken cDNA 2810002D23 p 25.4 53 0.0018 18.5 2.3 10 63-72 26-35 (85)
222 1k82_A Formamidopyrimidine-DNA 25.2 12 0.0004 25.7 -0.5 12 62-73 240-251 (268)
223 1k3x_A Endonuclease VIII; hydr 24.7 12 0.00042 25.5 -0.5 12 62-73 234-245 (262)
224 1wim_A KIAA0161 protein; ring 24.3 55 0.0019 18.0 2.4 32 30-61 6-39 (94)
225 1pft_A TFIIB, PFTFIIBN; N-term 24.3 53 0.0018 15.9 2.0 13 89-101 25-37 (50)
226 2pk7_A Uncharacterized protein 24.2 44 0.0015 17.9 1.8 10 63-72 9-18 (69)
227 3u6p_A Formamidopyrimidine-DNA 24.1 13 0.00044 25.6 -0.5 12 62-73 245-256 (273)
228 2vje_A E3 ubiquitin-protein li 24.0 81 0.0028 16.0 3.1 43 31-74 10-57 (64)
229 1wev_A Riken cDNA 1110020M19; 23.9 43 0.0015 18.7 1.8 52 4-60 17-73 (88)
230 4ayb_P DNA-directed RNA polyme 23.5 38 0.0013 16.9 1.3 15 89-103 4-18 (48)
231 2elx_A Zinc finger protein 406 23.4 24 0.00081 14.6 0.5 12 89-100 8-19 (35)
232 2yte_A Zinc finger protein 473 23.4 35 0.0012 14.9 1.2 14 88-101 10-23 (42)
233 3t6p_A Baculoviral IAP repeat- 23.4 40 0.0014 24.0 1.9 41 30-73 296-337 (345)
234 1srk_A Zinc finger protein ZFP 23.1 24 0.00083 14.7 0.5 12 89-100 8-19 (35)
235 2yt5_A Metal-response element- 23.1 46 0.0016 17.1 1.7 52 3-60 6-62 (66)
236 3h0g_L DNA-directed RNA polyme 22.9 59 0.002 17.2 2.1 9 64-72 23-31 (63)
237 2ely_A Zinc finger protein 224 22.7 39 0.0013 15.2 1.3 14 88-101 12-25 (46)
238 1fv5_A First zinc finger of U- 22.6 25 0.00084 16.0 0.5 14 88-101 8-21 (36)
239 2e9h_A EIF-5, eukaryotic trans 22.2 86 0.0029 19.8 3.1 33 56-91 98-132 (157)
240 2xb1_A Pygopus homolog 2, B-ce 21.9 49 0.0017 19.1 1.8 50 4-60 4-62 (105)
241 2fc7_A ZZZ3 protein; structure 21.9 48 0.0016 18.4 1.7 15 63-77 22-37 (82)
242 2elq_A Zinc finger protein 406 21.8 28 0.00096 14.6 0.6 12 89-100 10-21 (36)
243 3na7_A HP0958; flagellar bioge 21.4 16 0.00054 24.7 -0.5 32 63-99 199-233 (256)
244 2dip_A Zinc finger SWIM domain 21.3 66 0.0023 18.5 2.3 36 24-60 27-65 (98)
245 2elt_A Zinc finger protein 406 21.2 28 0.00097 14.5 0.6 13 88-100 9-21 (36)
246 2enh_A Zinc finger protein 28 21.1 41 0.0014 15.2 1.2 14 88-101 12-25 (46)
247 1ef4_A Subunit N, DNA-directed 21.1 37 0.0013 17.5 1.0 12 2-13 2-13 (55)
248 1ee8_A MUTM (FPG) protein; bet 21.0 12 0.00042 25.6 -1.1 12 62-73 235-246 (266)
249 2en7_A Zinc finger protein 268 20.9 40 0.0014 14.9 1.1 14 88-101 12-25 (44)
250 2elp_A Zinc finger protein 406 20.9 31 0.0011 14.6 0.7 14 88-101 9-22 (37)
251 2eos_A B-cell lymphoma 6 prote 20.6 42 0.0014 14.7 1.1 14 88-101 11-24 (42)
252 2kfq_A FP1; protein, de novo p 20.5 28 0.00095 14.4 0.4 11 89-99 3-13 (32)
253 2enf_A Zinc finger protein 347 20.5 44 0.0015 15.0 1.2 14 88-101 12-25 (46)
254 2elm_A Zinc finger protein 406 20.4 24 0.00083 15.2 0.2 12 89-100 10-21 (37)
255 2ytb_A Zinc finger protein 32; 20.4 42 0.0014 14.6 1.1 14 88-101 11-24 (42)
256 1twf_J DNA-directed RNA polyme 20.3 43 0.0015 18.2 1.2 10 4-13 5-14 (70)
257 2emg_A Zinc finger protein 484 20.3 44 0.0015 15.0 1.2 14 88-101 12-25 (46)
258 1vq8_Z 50S ribosomal protein L 20.2 56 0.0019 18.2 1.7 33 64-104 29-61 (83)
259 2i5o_A DNA polymerase ETA; zin 20.2 26 0.00087 16.7 0.3 13 89-101 10-22 (39)
260 3j21_V 50S ribosomal protein L 20.1 72 0.0025 17.0 2.1 9 64-72 6-14 (66)
261 2kgo_A Uncharacterized protein 20.1 21 0.00072 21.1 -0.1 29 30-58 57-85 (108)
262 3asl_A E3 ubiquitin-protein li 20.1 52 0.0018 17.5 1.6 9 22-30 40-48 (70)
263 1gnf_A Transcription factor GA 20.1 65 0.0022 15.8 1.8 11 48-58 23-33 (46)
No 1
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=100.00 E-value=9.8e-36 Score=187.63 Aligned_cols=119 Identities=20% Similarity=0.396 Sum_probs=111.2
Q ss_pred CCccccccccccc-cceEEECCcccccccccccccccccCCCCeeecCCeeccHhHHHhHhCCCCCCCCCccc--CcEEE
Q psy17880 2 IKAYCTSCKKKCS-GEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTKCAQCGEYVE--GEVVT 78 (120)
Q Consensus 2 ~~~~C~~C~~~i~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~C~~~i~--~~~~~ 78 (120)
..++|.+|+++|. ++++.++|+.||++||+|+.|+++|.+..|+.+++++||+.||.++++++|..|+++|. +.+|+
T Consensus 2 ~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~ 81 (126)
T 2xqn_T 2 EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEVQRVT 81 (126)
T ss_dssp CCCBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCCTTSCEEE
T ss_pred cCCCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCCcCceEEE
Confidence 4689999999997 56899999999999999999999999888999999999999999999999999999997 46899
Q ss_pred EeCcccc--ccccccccCCCcCCCCceeeeCCeeeeccCCCcCC
Q psy17880 79 ALGKTYH--QKCFTCARCRFSKKREIYNWLGGRAYENRLGGRAY 120 (120)
Q Consensus 79 ~~~~~~H--~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~~~~~~ 120 (120)
+.++.|| ++||+|..|+++|.++.|+..||++||+.++.+.|
T Consensus 82 a~~~~~H~~~~CF~C~~C~~~l~~~~f~~~~~~~yC~~~~~~~f 125 (126)
T 2xqn_T 82 YNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 125 (126)
T ss_dssp ETTEEEESSTTTSBCTTTCCBCTTSEEEEETTEEESSHHHHHSC
T ss_pred CCCCEeeCCCCCcCcCCCCCccCCCeeEeECCEEcchHHhhhhc
Confidence 9999999 99999999999999889999999999998776665
No 2
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=100.00 E-value=6.4e-35 Score=184.96 Aligned_cols=118 Identities=25% Similarity=0.545 Sum_probs=108.1
Q ss_pred CCccccccccccccc-eEEECCcccccccccccccccccCC--CCeeecCCeeccHhHHHhHhCC--CCCCCCCcccC--
Q psy17880 2 IKAYCTSCKKKCSGE-VLRVQDKYFHITCFQCSVCKNSLAQ--GGYFNKDGAYYCTSDYQKKFGT--KCAQCGEYVEG-- 74 (120)
Q Consensus 2 ~~~~C~~C~~~i~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~--~~~~~~~~~~~C~~c~~~~~~~--~C~~C~~~i~~-- 74 (120)
++++|.+|+++|.+. ++.++++.||++||+|+.|+++|.. ..|+.+++++||+.||.+++++ +|..|+++|.+
T Consensus 1 s~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e 80 (131)
T 2xjy_A 1 SLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYE 80 (131)
T ss_dssp CCCBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTTS
T ss_pred CcccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCccc
Confidence 468999999999877 6899999999999999999999963 5799999999999999999999 99999999975
Q ss_pred cEEEEeCccccccccccccCCCcCC-CCceeeeCCeeeeccCCCcC
Q psy17880 75 EVVTALGKTYHQKCFTCARCRFSKK-REIYNWLGGRAYENRLGGRA 119 (120)
Q Consensus 75 ~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~~~g~~yC~~~~~~~ 119 (120)
.+|.+.++.||++||+|..|+++|+ +..|+..||++||+.++.+.
T Consensus 81 ~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~C~~c~~~~ 126 (131)
T 2xjy_A 81 MTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEW 126 (131)
T ss_dssp EEEEETTEEEEGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGHHHH
T ss_pred eeEeeCCceECccCcccCCCCCCCCCCCEEEEECCEEEcHHHHHHH
Confidence 5889999999999999999999995 66799999999999998654
No 3
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=100.00 E-value=8.8e-33 Score=184.78 Aligned_cols=119 Identities=30% Similarity=0.715 Sum_probs=108.7
Q ss_pred CCccccccccccccc-eEEECCcccccccccccccccccCC--CCeeecCCeeccHhHHHhHhCC--CCCCCCCcccC--
Q psy17880 2 IKAYCTSCKKKCSGE-VLRVQDKYFHITCFQCSVCKNSLAQ--GGYFNKDGAYYCTSDYQKKFGT--KCAQCGEYVEG-- 74 (120)
Q Consensus 2 ~~~~C~~C~~~i~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~--~~~~~~~~~~~C~~c~~~~~~~--~C~~C~~~i~~-- 74 (120)
..++|.+|+++|.+. ++.++++.||++||+|..|+++|.. ..|+.+++++||+.||.+++++ +|..|+++|.+
T Consensus 4 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~e 83 (188)
T 1rut_X 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPASE 83 (188)
T ss_dssp CCCBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTTS
T ss_pred CCCcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccCc
Confidence 468999999999877 6889999999999999999999985 5799999999999999999998 79999999974
Q ss_pred cEEEEeCccccccccccccCCCcCC-CCceeeeCCeeeeccCCCcCC
Q psy17880 75 EVVTALGKTYHQKCFTCARCRFSKK-REIYNWLGGRAYENRLGGRAY 120 (120)
Q Consensus 75 ~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~~~g~~yC~~~~~~~~ 120 (120)
.+|.+.++.||++||+|..|+++|. +..|+..+|++||+.++.+.|
T Consensus 84 ~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~c~~~~~ 130 (188)
T 1rut_X 84 LVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTAL 130 (188)
T ss_dssp EEEEETTEEECGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGCCTTT
T ss_pred EEEEcCCCEEeCCCCeECCCCCCCCCCCeEEEECCeEECHHHHHHHh
Confidence 4789999999999999999999996 567999999999999997764
No 4
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.98 E-value=1.2e-32 Score=184.68 Aligned_cols=118 Identities=32% Similarity=0.663 Sum_probs=108.6
Q ss_pred Cccccccccccc-cceEEECCcccccccccccccccccCCCCeeecCCeeccHhHHHhHhCCC-----------------
Q psy17880 3 KAYCTSCKKKCS-GEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTK----------------- 64 (120)
Q Consensus 3 ~~~C~~C~~~i~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~----------------- 64 (120)
.++|.+|+++|. ++.+.++++.||++||+|..|+++|.+..|+.+++++||+.||.++++++
T Consensus 7 ~~~C~~C~~~I~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~~~~~~~ 86 (192)
T 1b8t_A 7 GKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDKGE 86 (192)
T ss_dssp CEECTTTCCEECSSCCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCCCCCCCC
T ss_pred CCcCccCCCeecceeEEEeCCceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccccccEecCCCc
Confidence 468999999995 77888999999999999999999999888999999999999999999876
Q ss_pred -------------------------------CCCCCCccc-CcEEEEeCccccccccccccCCCcCCCCceeeeCCeeee
Q psy17880 65 -------------------------------CAQCGEYVE-GEVVTALGKTYHQKCFTCARCRFSKKREIYNWLGGRAYE 112 (120)
Q Consensus 65 -------------------------------C~~C~~~i~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC 112 (120)
|..|+++|. ++.|.+.++.||++||+|+.|+++|.++.|+..||++||
T Consensus 87 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC 166 (192)
T 1b8t_A 87 SLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYC 166 (192)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEE
T ss_pred ccccccccccccCCCCcCccccccccCCCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCcccccCCEEeC
Confidence 778999996 578889999999999999999999998899999999999
Q ss_pred ccCCCcCC
Q psy17880 113 NRLGGRAY 120 (120)
Q Consensus 113 ~~~~~~~~ 120 (120)
+.++.+.|
T Consensus 167 ~~cy~~~f 174 (192)
T 1b8t_A 167 KGCYAKNF 174 (192)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 99986654
No 5
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.97 E-value=8.6e-32 Score=177.27 Aligned_cols=116 Identities=28% Similarity=0.586 Sum_probs=101.9
Q ss_pred CCccccccccccccc-eEEECCcccccccccccccccccCCCCeeecCCeeccHhHHHhHhCCCCCCCCCcccC-c-EEE
Q psy17880 2 IKAYCTSCKKKCSGE-VLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTKCAQCGEYVEG-E-VVT 78 (120)
Q Consensus 2 ~~~~C~~C~~~i~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~C~~~i~~-~-~~~ 78 (120)
..++|.+|+++|.+. ++.++|+.||++||+|..|+++|.+.. +.++|++||+.||.++++++|..|+++|.+ + ++.
T Consensus 5 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~-f~~~g~~yC~~~y~~~f~~~C~~C~~~I~~~~~v~~ 83 (169)
T 2rgt_A 5 EIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERC-FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRR 83 (169)
T ss_dssp --CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCC-EESSSCEECHHHHHHHHSCBCTTTCCBCCTTSEEEE
T ss_pred CCCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCC-cccCCeeeecccccccccccccccccccCCCcEEEE
Confidence 357899999999766 688999999999999999999998865 689999999999999999999999999975 3 668
Q ss_pred EeCccccccccccccCCCcCCC-Ccee-eeCCeeeeccCCCc
Q psy17880 79 ALGKTYHQKCFTCARCRFSKKR-EIYN-WLGGRAYENRLGGR 118 (120)
Q Consensus 79 ~~~~~~H~~Cf~C~~C~~~l~~-~~~~-~~~g~~yC~~~~~~ 118 (120)
+.++.||++||+|..|+++|.. +.|+ ..||++||+.++.+
T Consensus 84 a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~ 125 (169)
T 2rgt_A 84 AQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 125 (169)
T ss_dssp ETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHH
T ss_pred cCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHH
Confidence 9999999999999999999974 4565 45899999988754
No 6
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.97 E-value=3.3e-31 Score=176.31 Aligned_cols=115 Identities=28% Similarity=0.589 Sum_probs=102.3
Q ss_pred Cccccccccccccc-eEEECCcccccccccccccccccCCCCeeecCCeeccHhHHHhHhCCCCCCCCCcccC--cEEEE
Q psy17880 3 KAYCTSCKKKCSGE-VLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTKCAQCGEYVEG--EVVTA 79 (120)
Q Consensus 3 ~~~C~~C~~~i~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~C~~~i~~--~~~~~ 79 (120)
.++|.+|+++|.+. ++.++++.||++||+|..|+++|.+.. +.+++++||+.||.++++++|..|+++|.+ .++.+
T Consensus 60 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~-f~~~g~~yC~~~y~~~f~~kC~~C~~~I~~~~~v~~a 138 (182)
T 2jtn_A 60 IPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERC-FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRA 138 (182)
T ss_dssp CCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCC-EEETTEEECHHHHHHTTSCCCTTTCCCCCSSCCCCEE
T ss_pred CCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCc-eeECCEeeecCccccccccccccCCCccCCCceEEec
Confidence 57899999999876 678999999999999999999998865 579999999999999999999999999975 36789
Q ss_pred eCccccccccccccCCCcCCC-Ccee-eeCCeeeeccCCCc
Q psy17880 80 LGKTYHQKCFTCARCRFSKKR-EIYN-WLGGRAYENRLGGR 118 (120)
Q Consensus 80 ~~~~~H~~Cf~C~~C~~~l~~-~~~~-~~~g~~yC~~~~~~ 118 (120)
.++.||++||+|..|+++|.. ..|+ ..||++||+.++.+
T Consensus 139 ~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy~~ 179 (182)
T 2jtn_A 139 QDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 179 (182)
T ss_dssp TTEECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHHHH
T ss_pred CCCCEEeCCCcCCCCCCCCCCCCceEEccCCEEECHHHHHH
Confidence 999999999999999999975 4565 45899999988753
No 7
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.96 E-value=1.2e-29 Score=154.07 Aligned_cols=94 Identities=23% Similarity=0.574 Sum_probs=87.9
Q ss_pred CCccccccccccc--cceEEECCcccccccccccccccccCCCCeeecCCeeccHhHHHhHhCCCCCCCCCccc--CcEE
Q psy17880 2 IKAYCTSCKKKCS--GEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTKCAQCGEYVE--GEVV 77 (120)
Q Consensus 2 ~~~~C~~C~~~i~--~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~C~~~i~--~~~~ 77 (120)
..++|.+|+++|. ++++.++++.||++||+|..|+++|.+..|+.+++++||+.||.++++++|..|+++|. +.+|
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~ 83 (101)
T 2cup_A 4 GSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIVAGDQNV 83 (101)
T ss_dssp CCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCCSSSCEE
T ss_pred CCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccccCCeEE
Confidence 3578999999995 67899999999999999999999998878999999999999999999999999999997 4689
Q ss_pred EEeCccccccccccccCC
Q psy17880 78 TALGKTYHQKCFTCARCR 95 (120)
Q Consensus 78 ~~~~~~~H~~Cf~C~~C~ 95 (120)
++.++.||++||+|..|+
T Consensus 84 ~a~~~~~H~~CF~C~~C~ 101 (101)
T 2cup_A 84 EYKGTVWHKDCFSGPSSG 101 (101)
T ss_dssp ESSSCEEETTTCCCTTCC
T ss_pred EeCCcchHHhCCCCCCCC
Confidence 999999999999999985
No 8
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.93 E-value=9.9e-27 Score=145.75 Aligned_cols=106 Identities=23% Similarity=0.417 Sum_probs=93.5
Q ss_pred CCccccccccccccc-eEEECCcccccccccccccccccCC--CCeeecCCeeccHhHHHhHhCC--CCCCCCCcccCcE
Q psy17880 2 IKAYCTSCKKKCSGE-VLRVQDKYFHITCFQCSVCKNSLAQ--GGYFNKDGAYYCTSDYQKKFGT--KCAQCGEYVEGEV 76 (120)
Q Consensus 2 ~~~~C~~C~~~i~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~--~~~~~~~~~~~C~~c~~~~~~~--~C~~C~~~i~~~~ 76 (120)
..++|.+|+++|.+. ++.++++.||++||+|+.|+++|.+ ..|+.+++++||..||.+++++ +|+.|+++|.+..
T Consensus 4 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGD 83 (122)
T ss_dssp CCCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCEE
T ss_pred CCCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCchh
Confidence 467999999999876 5899999999999999999999973 5799999999999999999999 9999999998766
Q ss_pred EEEeCccccccccccccCCCcCCCCceeeeCCeeeeccCCCcCC
Q psy17880 77 VTALGKTYHQKCFTCARCRFSKKREIYNWLGGRAYENRLGGRAY 120 (120)
Q Consensus 77 ~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~~~~~~ 120 (120)
|++.++ .+|.++.|+..||+|||..++.+.+
T Consensus 84 ~~~~g~-------------~~l~g~~f~~~~~~~yC~~~~~~~~ 114 (122)
T 1m3v_A 84 VMVVGE-------------PTLMGGEFGDEDERLITRLENTQFD 114 (122)
T ss_dssp SSSSSS-------------SSCCSCTTCCTTCCCCEECTTTTTT
T ss_pred eEEcCC-------------cCCCCCccEecCCEeEccCcchhch
Confidence 655553 3678889999999999999997753
No 9
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.89 E-value=8.7e-24 Score=130.89 Aligned_cols=100 Identities=19% Similarity=0.351 Sum_probs=85.2
Q ss_pred CCccccccccccccc-eEEECCcccccccccccccccccCC--CCeeecCCeeccHhHHHhHhCCCCCCCCCcccCcEEE
Q psy17880 2 IKAYCTSCKKKCSGE-VLRVQDKYFHITCFQCSVCKNSLAQ--GGYFNKDGAYYCTSDYQKKFGTKCAQCGEYVEGEVVT 78 (120)
Q Consensus 2 ~~~~C~~C~~~i~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~--~~~~~~~~~~~C~~c~~~~~~~~C~~C~~~i~~~~~~ 78 (120)
+.++|.+|+++|.+. ++.++++.||++||+|+.|+++|.+ ..|+.+++++||+.||.++|+++|..|.. +.+|+
T Consensus 2 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~c~~---~~~~~ 78 (114)
T 1j2o_A 2 SLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGSG---GDVMV 78 (114)
T ss_dssp CCBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCSSCBS---CSCCC
T ss_pred cCCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcccCcCCC---CceeE
Confidence 467899999999877 7899999999999999999999975 57999999999999999999999988862 33332
Q ss_pred EeCccccccccccccCCCc-CCCCceeeeCCeeeeccCCCcC
Q psy17880 79 ALGKTYHQKCFTCARCRFS-KKREIYNWLGGRAYENRLGGRA 119 (120)
Q Consensus 79 ~~~~~~H~~Cf~C~~C~~~-l~~~~~~~~~g~~yC~~~~~~~ 119 (120)
|..+ |.++.|+..|+++||..++.++
T Consensus 79 ---------------~~~~~~~g~~f~~~~~~~~C~~~~~~~ 105 (114)
T 1j2o_A 79 ---------------VGEPTLMGGEFGDEDERLITRLENTQF 105 (114)
T ss_dssp ---------------SSCSSTTSSBCCCSSSCCCEEEECTTC
T ss_pred ---------------cCCccCCCCeeEEcCCEeecchhhhcc
Confidence 3344 5677899999999999998765
No 10
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=3.6e-23 Score=121.06 Aligned_cols=73 Identities=21% Similarity=0.438 Sum_probs=68.6
Q ss_pred CCeeccHhHHHhHhCCCCCCCCCccc--CcEEEEeCccccccccccccCCCcCCCCceeeeCCeeeeccCCCcCC
Q psy17880 48 DGAYYCTSDYQKKFGTKCAQCGEYVE--GEVVTALGKTYHQKCFTCARCRFSKKREIYNWLGGRAYENRLGGRAY 120 (120)
Q Consensus 48 ~~~~~C~~c~~~~~~~~C~~C~~~i~--~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~~~~~~ 120 (120)
+|++||+.||.++++++|+.|+++|. +.+|.+.++.||++||+|+.|+++|.++.|+..+|++||+.++.+.|
T Consensus 1 ~g~~yC~~~y~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~ 75 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAF 75 (82)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCCG
T ss_pred CCceechhHhCcccCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCCccEeeCCEEECHHHHhhhc
Confidence 57899999999999999999999997 67889999999999999999999999889999999999999998765
No 11
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.86 E-value=2.8e-23 Score=120.97 Aligned_cols=73 Identities=19% Similarity=0.424 Sum_probs=68.4
Q ss_pred CCeeccHhHHHhHhCCCCCCCCCcccCcEEEEeCccccccccccccCCCcCCCCceeeeCCeeeeccCCCcCC
Q psy17880 48 DGAYYCTSDYQKKFGTKCAQCGEYVEGEVVTALGKTYHQKCFTCARCRFSKKREIYNWLGGRAYENRLGGRAY 120 (120)
Q Consensus 48 ~~~~~C~~c~~~~~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~~~~~~ 120 (120)
+|++||++||.++++++|..|+++|.++.|.+.++.||++||+|+.|+++|.++.|+..||++||+.++.+.|
T Consensus 1 gg~~yC~~cy~~~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 73 (80)
T 2cuq_A 1 GSSGSSGPCYENKFAPRCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELF 73 (80)
T ss_dssp CCCCSCCCCCCCCSSCCCTTTCCCCCSCCEESSSSEECTTTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHHT
T ss_pred CCcEEcHHHHccccCCcCCCCCCEecCcEEEECCchhhhhhCCcccCCCcCCCCeeEeECCEEECHHHHHHHc
Confidence 5789999999999999999999999888999999999999999999999999889999999999999886654
No 12
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.85 E-value=3.6e-23 Score=120.51 Aligned_cols=72 Identities=22% Similarity=0.422 Sum_probs=67.6
Q ss_pred CCeeccHhHHHhHhCCCCCCCCCcccCcEEEEeCccccccccccccCCCcCCCCceeeeCCeeeeccCCCcC
Q psy17880 48 DGAYYCTSDYQKKFGTKCAQCGEYVEGEVVTALGKTYHQKCFTCARCRFSKKREIYNWLGGRAYENRLGGRA 119 (120)
Q Consensus 48 ~~~~~C~~c~~~~~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~~~~~ 119 (120)
++++||++||.++++++|+.|+++|.++.|.+.++.||++||+|+.|+++|.++.|+..||++||+.++.+.
T Consensus 1 gg~~yC~~~y~~~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~ 72 (80)
T 1x3h_A 1 GSSGSSGKDFLAMFSPKCGGCNRPVLENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHR 72 (80)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSSCEEETTEEECTTTCBCSSSCCBSCSSCCEESSSCEECHHHHHHH
T ss_pred CCCccchhHHhhhcCCccccCCCeecceeEEECCCeEecCcCChhhCCCCCCCCcEEeECCEEECHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999988999999999999987654
No 13
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1e-22 Score=117.73 Aligned_cols=71 Identities=21% Similarity=0.489 Sum_probs=66.2
Q ss_pred CCeeccHhHHHhHhCCCCCCCCCcccC-----cEEEEeCccccccccccccCCCcCCCCceeeeCCeeeeccCCCc
Q psy17880 48 DGAYYCTSDYQKKFGTKCAQCGEYVEG-----EVVTALGKTYHQKCFTCARCRFSKKREIYNWLGGRAYENRLGGR 118 (120)
Q Consensus 48 ~~~~~C~~c~~~~~~~~C~~C~~~i~~-----~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~~~~ 118 (120)
++++||++||.++++++|++|+++|.+ ++|.+.++.||++||+|+.|+++|.++.|+..+|++||+.++.+
T Consensus 1 g~~~yC~~cy~~~~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~~ 76 (77)
T 2egq_A 1 GSSGSSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKK 76 (77)
T ss_dssp CCSSCCTTCCCSCCCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSCCCEETTEECCHHHHHH
T ss_pred CCCeEchhHhchhhCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCccEeECCEEEChHHhcc
Confidence 468999999999999999999999986 78999999999999999999999999899999999999988643
No 14
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.84 E-value=1.5e-22 Score=118.35 Aligned_cols=73 Identities=18% Similarity=0.306 Sum_probs=67.5
Q ss_pred CCeeccHhHHHhHhCCCCCCCCCccc--CcEEEEeCccccccccccccCCCcCCCCceeeeCCeeeeccCCCcCC
Q psy17880 48 DGAYYCTSDYQKKFGTKCAQCGEYVE--GEVVTALGKTYHQKCFTCARCRFSKKREIYNWLGGRAYENRLGGRAY 120 (120)
Q Consensus 48 ~~~~~C~~c~~~~~~~~C~~C~~~i~--~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~~~~~~ 120 (120)
++.+||++||.++++++|..|+++|. +.+|.+.++.||++||+|..|+++|..+.|+..+|++||+.++.+.|
T Consensus 1 ~~~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 75 (82)
T 1x63_A 1 GSSGSSGKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKF 75 (82)
T ss_dssp CCSCCCCCCCSCCCSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHT
T ss_pred CCCcCchhHHccccCCcCccCCcccccCceEEEECccccccccCchhhCCCccCCCccEeeCCEEECHHHHHHHh
Confidence 46899999999999999999999997 56899999999999999999999999999999999999999886654
No 15
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.83 E-value=2.7e-22 Score=117.11 Aligned_cols=72 Identities=22% Similarity=0.350 Sum_probs=66.1
Q ss_pred CCeeccHhHHHhHhCCCCCCCCCcccCcEEEEeCccccccccccccCCCcCCCCceeee-CCeeeeccCCCcCC
Q psy17880 48 DGAYYCTSDYQKKFGTKCAQCGEYVEGEVVTALGKTYHQKCFTCARCRFSKKREIYNWL-GGRAYENRLGGRAY 120 (120)
Q Consensus 48 ~~~~~C~~c~~~~~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~-~g~~yC~~~~~~~~ 120 (120)
++++||++||. +++++|+.|+++|.+++|.+.++.||++||+|+.|+++|.+..|... ||++||+.++.+.|
T Consensus 2 ~g~~yC~~~y~-~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f 74 (81)
T 2dlo_A 2 SSGSSGEGCYV-ATLEKCATCSQPILDRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKF 74 (81)
T ss_dssp CCCCCCCCCCC-SSCCBCTTTCCBCCSCCEEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHT
T ss_pred cCCEECHHHhh-cCCCccccCCCeecceeEEECCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHHh
Confidence 57999999999 78899999999999999999999999999999999999998888876 79999999887654
No 16
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.81 E-value=5.8e-22 Score=115.65 Aligned_cols=72 Identities=24% Similarity=0.480 Sum_probs=65.0
Q ss_pred CCeeccHhHHHhHhCCCCCCCCCcccCcEEEEeCccccccccccccCCCcCCC-Ccee-eeCCeeeeccCCCcC
Q psy17880 48 DGAYYCTSDYQKKFGTKCAQCGEYVEGEVVTALGKTYHQKCFTCARCRFSKKR-EIYN-WLGGRAYENRLGGRA 119 (120)
Q Consensus 48 ~~~~~C~~c~~~~~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~-~~~~-~~~g~~yC~~~~~~~ 119 (120)
++.+||+.||.++++++|..|+++|.+++|.+.++.||++||+|..|+++|.. ..|. ..+|++||+.++.+.
T Consensus 1 g~~~yC~~~y~~~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~ 74 (81)
T 1x6a_A 1 GSSGSSGKDYWGKFGEFCHGCSLLMTGPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEV 74 (81)
T ss_dssp CCCCCCCCCSSCCSSCBCTTTCCBCCSCCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHH
T ss_pred CCCccchhHHhhhcCCcCccCCCCcCceEEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHH
Confidence 36799999999999999999999999989999999999999999999999975 5677 489999999987654
No 17
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.81 E-value=4.1e-20 Score=106.52 Aligned_cols=70 Identities=29% Similarity=0.602 Sum_probs=65.5
Q ss_pred ccccccccccc-cceEEECCcccccccccccccccccCCCCeeecCCeeccH-hHHHhHhCCCCCCCCCccc
Q psy17880 4 AYCTSCKKKCS-GEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCT-SDYQKKFGTKCAQCGEYVE 73 (120)
Q Consensus 4 ~~C~~C~~~i~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~-~c~~~~~~~~C~~C~~~i~ 73 (120)
++|.+|+++|. ++.+.++++.||++||+|..|+++|.++.|+.+++++||. .||.++++++|..|++++.
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~~~~~ 72 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGGAES 72 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCCCSSS
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCcCCcee
Confidence 58999999996 8889999999999999999999999988899999999999 6999999999999998764
No 18
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.80 E-value=1.2e-20 Score=110.07 Aligned_cols=71 Identities=37% Similarity=0.690 Sum_probs=63.3
Q ss_pred CeeccHhHHHhHhCCCCCCCCCcccCcEEEEeCccccccccccccCCCcCCCCceeeeCC-eeeeccCCCcC
Q psy17880 49 GAYYCTSDYQKKFGTKCAQCGEYVEGEVVTALGKTYHQKCFTCARCRFSKKREIYNWLGG-RAYENRLGGRA 119 (120)
Q Consensus 49 ~~~~C~~c~~~~~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g-~~yC~~~~~~~ 119 (120)
+.+||+.||.++++++|+.|+++|.+++|.+.++.||++||+|..|+++|..+.++..++ .+||+.++.+.
T Consensus 2 ~~~yC~~dy~~~~~~~C~~C~~~I~~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~ 73 (81)
T 1v6g_A 2 SSGSSGLDYQRLYGTRCFSCDQFIEGEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPV 73 (81)
T ss_dssp CCCCCCSCGGGSCCCBCTTTCCBCCSCCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCC
T ss_pred CCCcchHHHHhHhCCcCccccCEeccceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhccc
Confidence 578999999999999999999999999999999999999999999999998776555555 57999988654
No 19
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.79 E-value=2.2e-19 Score=101.60 Aligned_cols=66 Identities=24% Similarity=0.553 Sum_probs=61.8
Q ss_pred CCccccccccccccceEEECCcccccccccccccccccCCCCeeecCCeeccHhHHHhHhCCCCCC
Q psy17880 2 IKAYCTSCKKKCSGEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTKCAQ 67 (120)
Q Consensus 2 ~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~ 67 (120)
..++|.+|+++|.++.+.++++.||++||+|..|+++|.+..|+.+++++||+.||.++++++|++
T Consensus 4 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~g 69 (69)
T 2cur_A 4 GSSGCVKCNKAITSGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPSSG 69 (69)
T ss_dssp CCCCCSSSCCCCCTTCEEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHTCSCCC
T ss_pred CcCCCcccCCEeCcceEEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhcCCCCC
Confidence 457899999999988999999999999999999999998888999999999999999999999974
No 20
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.78 E-value=3.1e-19 Score=101.25 Aligned_cols=66 Identities=20% Similarity=0.513 Sum_probs=61.7
Q ss_pred CCccccccccccccceEEECCcccccccccccccccccCCCCeeecCCeeccHhHHHhHhCCCCCC
Q psy17880 2 IKAYCTSCKKKCSGEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTKCAQ 67 (120)
Q Consensus 2 ~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~ 67 (120)
..++|.+|+++|.++.+.++++.||++||+|..|+++|.+..|+.+++++||..||.++++++|+.
T Consensus 4 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~~ 69 (70)
T 2d8z_A 4 GSSGCVQCKKPITTGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGPSS 69 (70)
T ss_dssp CCCBCSSSCCBCCSSEEESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTCCCCTT
T ss_pred CCCCCcccCCeeccceEEECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhccccCC
Confidence 357899999999988999999999999999999999998888999999999999999999999863
No 21
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.77 E-value=6e-19 Score=104.76 Aligned_cols=66 Identities=30% Similarity=0.620 Sum_probs=61.8
Q ss_pred CCccccccccccccceEEECCcccccccccccccccccCCCCeeecCCeeccHhHHHhHhCCCCCC
Q psy17880 2 IKAYCTSCKKKCSGEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTKCAQ 67 (120)
Q Consensus 2 ~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~ 67 (120)
..++|.+|+++|.++++.++++.||++||+|..|+++|.+..|+.+++++||..||.++++++|+.
T Consensus 24 ~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~c~s 89 (90)
T 2dar_A 24 RTPMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGPSS 89 (90)
T ss_dssp CCCBBSSSCCBCCSCEEEETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTSCCCCC
T ss_pred CCCCCccCCCEecceEEEECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcCCCCCC
Confidence 356899999999999999999999999999999999999888999999999999999999999963
No 22
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.77 E-value=1.9e-19 Score=103.76 Aligned_cols=68 Identities=24% Similarity=0.502 Sum_probs=63.5
Q ss_pred CCcccccccccccc----ceEEECCcccccccccccccccccCCCCeeecCCeeccHhHHHhHhCCCCCCCC
Q psy17880 2 IKAYCTSCKKKCSG----EVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTKCAQCG 69 (120)
Q Consensus 2 ~~~~C~~C~~~i~~----~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~C~ 69 (120)
..++|.+|+++|.+ +++.++++.||++||+|+.|+++|.+..|+.+++++||..||.++++++|+.++
T Consensus 4 ~~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~~s 75 (76)
T 1x68_A 4 GSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISGPSS 75 (76)
T ss_dssp CCCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCSSSSSC
T ss_pred cCCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCcCCCCC
Confidence 35789999999987 799999999999999999999999988899999999999999999999998775
No 23
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.77 E-value=6.1e-19 Score=101.61 Aligned_cols=62 Identities=16% Similarity=0.433 Sum_probs=57.7
Q ss_pred hHhCCCCCCCCCcccC----cEEEEeCccccccccccccCCCcCCCCceeeeCCeeeeccCCCcCC
Q psy17880 59 KKFGTKCAQCGEYVEG----EVVTALGKTYHQKCFTCARCRFSKKREIYNWLGGRAYENRLGGRAY 120 (120)
Q Consensus 59 ~~~~~~C~~C~~~i~~----~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~~~~~~ 120 (120)
++++++|..|+++|.+ ++|.+.++.||++||+|+.|+++|.+..|+..||++||+.++.+.|
T Consensus 2 ~~~~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f 67 (76)
T 1x68_A 2 SSGSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMD 67 (76)
T ss_dssp TTCCCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCC
T ss_pred CccCCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhh
Confidence 3567999999999986 8999999999999999999999999889999999999999998876
No 24
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.77 E-value=2.7e-19 Score=104.29 Aligned_cols=70 Identities=30% Similarity=0.620 Sum_probs=56.2
Q ss_pred Ccccccccccc-ccceEEECCcccccccccccccccccCCCCeeecCCeeccHhHHHhHhCCCCCCCCCcc
Q psy17880 3 KAYCTSCKKKC-SGEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTKCAQCGEYV 72 (120)
Q Consensus 3 ~~~C~~C~~~i-~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~C~~~i 72 (120)
.++|.+|+++| .++.+.+.++.||++||+|+.|+++|....|+.+++++||+.||.++++++|..|++..
T Consensus 7 ~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~gcg~g~ 77 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQGA 77 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC----------
T ss_pred CCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCcccccCCcc
Confidence 57899999999 57789999999999999999999999988899999999999999999999999998653
No 25
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.76 E-value=1e-18 Score=101.48 Aligned_cols=66 Identities=26% Similarity=0.654 Sum_probs=61.8
Q ss_pred CCccccccccccccceEEECCcccccccccccccccccCCCCeeecCCeeccHhHHHhHhCCCCCC
Q psy17880 2 IKAYCTSCKKKCSGEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTKCAQ 67 (120)
Q Consensus 2 ~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~ 67 (120)
..++|++|+++|.++.|.++++.||++||+|+.|+++|.++.|+.+++++||+.||.++++++|+.
T Consensus 14 ~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f~~~C~~ 79 (80)
T 1x3h_A 14 FSPKCGGCNRPVLENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGSGPSS 79 (80)
T ss_dssp CSCBCTTTCCBCCSSCEEETTEEECTTTCBCSSSCCBSCSSCCEESSSCEECHHHHHHHHSSSCCC
T ss_pred cCCccccCCCeecceeEEECCCeEecCcCChhhCCCCCCCCcEEeECCEEECHHHHHHHcCCCCCC
Confidence 357899999999999999999999999999999999998888999999999999999999999974
No 26
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.76 E-value=9.6e-19 Score=99.67 Aligned_cols=66 Identities=26% Similarity=0.597 Sum_probs=61.1
Q ss_pred CCccccccccccc--cceEEECCcccccccccccccccccCCCCeeecCCeeccHhHHHhHhCCCCCC
Q psy17880 2 IKAYCTSCKKKCS--GEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTKCAQ 67 (120)
Q Consensus 2 ~~~~C~~C~~~i~--~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~ 67 (120)
..++|.+|+++|. ++++.+.++.||++||+|..|+++|.+..|+.+++++||+.||.++++++|+.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1wyh_A 4 GSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGPSS 71 (72)
T ss_dssp CCCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTSCCCCC
T ss_pred cCCCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHccCcCCC
Confidence 4578999999997 57899999999999999999999999888999999999999999999999963
No 27
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.76 E-value=7.3e-19 Score=98.63 Aligned_cols=63 Identities=24% Similarity=0.654 Sum_probs=58.9
Q ss_pred CCccccccccccccceEEECCcccccccccccccccccCCCCeeecCCeeccHhHHHhHhCCC
Q psy17880 2 IKAYCTSCKKKCSGEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTK 64 (120)
Q Consensus 2 ~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~ 64 (120)
..++|.+|+++|.++++.+.++.||++||+|+.|+++|.++.|+.+++++||+.||.++++++
T Consensus 4 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~k 66 (66)
T 1nyp_A 4 GVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDV 66 (66)
T ss_dssp CCCEETTTTEECCSCEECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCSCC
T ss_pred CCCCCcccCCEecceEEEECccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhCCC
Confidence 467899999999988999999999999999999999999888999999999999999998764
No 28
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.76 E-value=1.5e-18 Score=98.87 Aligned_cols=66 Identities=23% Similarity=0.558 Sum_probs=60.8
Q ss_pred CCccccccccccc--cceEEECCcccccccccccccccccCCCCeeecCCeeccHhHHHhHhCCCCCC
Q psy17880 2 IKAYCTSCKKKCS--GEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTKCAQ 67 (120)
Q Consensus 2 ~~~~C~~C~~~i~--~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~ 67 (120)
..++|.+|+++|. +.++.++++.||++||+|..|+++|.+..|+.+++++||+.||.++++++|+.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1x4k_A 4 GSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGPSS 71 (72)
T ss_dssp CCCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTSSCCCC
T ss_pred cCCCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhCCCCCC
Confidence 3578999999997 45899999999999999999999999888999999999999999999999973
No 29
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.75 E-value=1.5e-18 Score=99.96 Aligned_cols=66 Identities=27% Similarity=0.635 Sum_probs=61.0
Q ss_pred CCccccccccccc-cceEEECCcccccccccccccccccCCCCeeecCCeeccH-hHHHhHhCCCCCC
Q psy17880 2 IKAYCTSCKKKCS-GEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCT-SDYQKKFGTKCAQ 67 (120)
Q Consensus 2 ~~~~C~~C~~~i~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~-~c~~~~~~~~C~~ 67 (120)
..++|.+|+++|. ++.+.++++.||++||+|..|+++|.+..|+.+++++||. .||.++++++|.+
T Consensus 8 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~kc~g 75 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSGPSS 75 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSCSSCSC
T ss_pred CCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhcccccCC
Confidence 4578999999997 7889999999999999999999999988899999999999 7999999999863
No 30
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.74 E-value=2.3e-18 Score=100.28 Aligned_cols=66 Identities=24% Similarity=0.568 Sum_probs=60.2
Q ss_pred CCccccccccccccceEEECCcccccccccccccccccCCCCeeec-CCeeccHhHHHhHhCCCCCC
Q psy17880 2 IKAYCTSCKKKCSGEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNK-DGAYYCTSDYQKKFGTKCAQ 67 (120)
Q Consensus 2 ~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~-~~~~~C~~c~~~~~~~~C~~ 67 (120)
..++|.+|+++|.++++.++++.||++||+|+.|+++|.+..|+.. ++++||+.||.++++++|++
T Consensus 14 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~~~C~~ 80 (81)
T 2dlo_A 14 TLEKCATCSQPILDRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASGPSS 80 (81)
T ss_dssp SCCBCTTTCCBCCSCCEEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTTSSSCC
T ss_pred CCCccccCCCeecceeEEECCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHHhcCcCCC
Confidence 3578999999999999999999999999999999999987777765 78999999999999999974
No 31
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.74 E-value=2.4e-18 Score=99.90 Aligned_cols=65 Identities=22% Similarity=0.536 Sum_probs=61.1
Q ss_pred CccccccccccccceEEECCcccccccccccccccccCCCCeeecCCeeccHhHHHhHhCCCCCC
Q psy17880 3 KAYCTSCKKKCSGEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTKCAQ 67 (120)
Q Consensus 3 ~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~ 67 (120)
.++|.+|+++|.++.|.++++.||++||+|..|+++|.+..|+.+++++||+.||.++++++|+.
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~s 79 (80)
T 2cuq_A 15 APRCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFASGPSS 79 (80)
T ss_dssp SCCCTTTCCCCCSCCEESSSSEECTTTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHHTTCSTTC
T ss_pred CCcCCCCCCEecCcEEEECCchhhhhhCCcccCCCcCCCCeeEeECCEEECHHHHHHHcCCCCCC
Confidence 57899999999888999999999999999999999998878999999999999999999999863
No 32
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.74 E-value=2.3e-18 Score=100.15 Aligned_cols=64 Identities=38% Similarity=0.867 Sum_probs=59.2
Q ss_pred Cccccccccccc-cceEEECCcccccccccccccccccCCCCeeecCCeeccHhHHHhHhCCCCCC
Q psy17880 3 KAYCTSCKKKCS-GEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTKCAQ 67 (120)
Q Consensus 3 ~~~C~~C~~~i~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~ 67 (120)
.++|.+|+++|. ++.+.++++.||++||+|..|+++|.+ .|+.+++++||+.||.++|+++|+.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~fg~~C~~ 79 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGSGPSS 79 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHTTCCSTT
T ss_pred CCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHcCCCCCC
Confidence 568999999995 778999999999999999999999986 6999999999999999999999974
No 33
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=6.5e-18 Score=95.74 Aligned_cols=63 Identities=22% Similarity=0.576 Sum_probs=59.0
Q ss_pred CccccccccccccceEEECCcccccccccccccccccCCCCeeecCCeeccHhHHHhHhCCCC
Q psy17880 3 KAYCTSCKKKCSGEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTKC 65 (120)
Q Consensus 3 ~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C 65 (120)
.++|.+|+++|.++++.++++.||++||+|..|+++|.+..|+.+++++||..||.+++++..
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~ 67 (70)
T 2d8x_A 5 SSGCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASGP 67 (70)
T ss_dssp SSBCSSSCCBCCSCCEEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCCCS
T ss_pred CCcCccCCCEecceEEEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCCCC
Confidence 568999999999999999999999999999999999998888899999999999999998764
No 34
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.73 E-value=2.5e-19 Score=100.57 Aligned_cols=61 Identities=28% Similarity=0.424 Sum_probs=56.3
Q ss_pred HhCCCCCCCCCcccCcEEEEeCccccccccccccCCCcCCCCceeeeCCeeeeccCCCcCC
Q psy17880 60 KFGTKCAQCGEYVEGEVVTALGKTYHQKCFTCARCRFSKKREIYNWLGGRAYENRLGGRAY 120 (120)
Q Consensus 60 ~~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~~~~~~ 120 (120)
+++++|+.|+++|.+++|.+.++.||++||+|+.|+++|.++.|+..||++||+.++.+.|
T Consensus 3 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f 63 (66)
T 1nyp_A 3 MGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLF 63 (66)
T ss_dssp CCCCEETTTTEECCSCEECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHC
T ss_pred cCCCCCcccCCEecceEEEECccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHh
Confidence 3568999999999988999999999999999999999999999999999999999987654
No 35
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=3.1e-18 Score=98.74 Aligned_cols=65 Identities=25% Similarity=0.655 Sum_probs=58.4
Q ss_pred CCccccccccccc--cceEEECCcccccccccccccccccCCCCeeecCCeeccHhHHHhHhCCCCC
Q psy17880 2 IKAYCTSCKKKCS--GEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTKCA 66 (120)
Q Consensus 2 ~~~~C~~C~~~i~--~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~ 66 (120)
..++|.+|+++|. +.++.+.++.||++||+|..|+++|.++.|+.+++++||+.||.++++++|+
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~~C~ 76 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCWI 76 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCCC--
T ss_pred CCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhhcccC
Confidence 4578999999995 5678899999999999999999999988899999999999999999999986
No 36
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=2.8e-18 Score=97.80 Aligned_cols=63 Identities=22% Similarity=0.579 Sum_probs=58.3
Q ss_pred Ccccccccccccc----ceEEECCcccccccccccccccccCCCCeeecCCeeccHhHHHhHhCCCC
Q psy17880 3 KAYCTSCKKKCSG----EVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTKC 65 (120)
Q Consensus 3 ~~~C~~C~~~i~~----~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C 65 (120)
.++|.+|+++|.+ +++.++++.||++||+|..|+++|.+..|+.+++++||..||.++++|++
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p~~ 71 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSS 71 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCSSC
T ss_pred CCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccCCCC
Confidence 5789999999986 68899999999999999999999998889999999999999999998865
No 37
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.72 E-value=6.9e-18 Score=99.93 Aligned_cols=64 Identities=31% Similarity=0.719 Sum_probs=60.1
Q ss_pred CccccccccccccceEEECCcccccccccccccccccCCCCeeecCCeeccHhHHHhHhCCCCC
Q psy17880 3 KAYCTSCKKKCSGEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTKCA 66 (120)
Q Consensus 3 ~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~ 66 (120)
.++|.+|+++|.++++.++++.||++||+|..|+++|.+..|+.+++++||+.||.+++++++.
T Consensus 25 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~~~ 88 (89)
T 1x64_A 25 MPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPSS 88 (89)
T ss_dssp CCBCTTTCCBCCSCCEESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSCCC
T ss_pred CCCcccCCCEecccEEEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 4689999999999999999999999999999999999888899999999999999999998875
No 38
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.72 E-value=1.1e-18 Score=99.79 Aligned_cols=60 Identities=27% Similarity=0.479 Sum_probs=54.8
Q ss_pred HhCCCCCCCCCcccCcEEEEeCccccccccccccCCCcCC-CCceeeeCCeeeeccCCCcC
Q psy17880 60 KFGTKCAQCGEYVEGEVVTALGKTYHQKCFTCARCRFSKK-REIYNWLGGRAYENRLGGRA 119 (120)
Q Consensus 60 ~~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~~~g~~yC~~~~~~~ 119 (120)
+++++|+.|+++|.+++|.+.++.||++||+|+.|+++|. +..|+..+|++||+.++...
T Consensus 3 ~~~~~C~~C~~~I~~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~ 63 (73)
T 1wig_A 3 SGSSGCDSCEKYITGRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAA 63 (73)
T ss_dssp CSCCSCSSSCCCCSSCCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHT
T ss_pred cCcCCcccCCCEecCeeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHh
Confidence 4678999999999999999999999999999999999998 67899999999999987554
No 39
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.72 E-value=3.5e-18 Score=99.11 Aligned_cols=64 Identities=22% Similarity=0.565 Sum_probs=59.7
Q ss_pred CccccccccccccceEEECCcccccccccccccccccCCCCeeecCCeeccHhHHHhHhCCCCC
Q psy17880 3 KAYCTSCKKKCSGEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTKCA 66 (120)
Q Consensus 3 ~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~ 66 (120)
.++|.+|+++|.++++.++++.||++||+|..|+++|.+..|+.+++++||+.||.++++++..
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~g~ 78 (79)
T 1x62_A 15 LPMCDKCGTGIVGVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPSS 78 (79)
T ss_dssp CCCCSSSCCCCCSSCEECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSSCCC
T ss_pred CCccccCCCCccCcEEEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 4689999999998999999999999999999999999877899999999999999999998764
No 40
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.71 E-value=2.4e-18 Score=97.98 Aligned_cols=61 Identities=15% Similarity=0.353 Sum_probs=55.5
Q ss_pred HhCCCCCCCCCccc--CcEEEEeCccccccccccccCCCcCCCCceeeeCCeeeeccCCCcCC
Q psy17880 60 KFGTKCAQCGEYVE--GEVVTALGKTYHQKCFTCARCRFSKKREIYNWLGGRAYENRLGGRAY 120 (120)
Q Consensus 60 ~~~~~C~~C~~~i~--~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~~~~~~ 120 (120)
+++++|..|+++|. +.+|.+.++.||++||+|..|+++|.++.|+..||++||+.++.+.|
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 65 (72)
T 1x4k_A 3 SGSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQH 65 (72)
T ss_dssp SCCCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHT
T ss_pred ccCCCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHh
Confidence 46789999999997 46899999999999999999999999999999999999999886654
No 41
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=2.7e-18 Score=100.16 Aligned_cols=65 Identities=26% Similarity=0.586 Sum_probs=60.2
Q ss_pred Cccccccccccc--cceEEECCcccccccccccccccccCCCCeeecCCeeccHhHHHhHhCCCCCC
Q psy17880 3 KAYCTSCKKKCS--GEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTKCAQ 67 (120)
Q Consensus 3 ~~~C~~C~~~i~--~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~ 67 (120)
.++|.+|+++|. +.++.++++.||++||+|+.|+++|.++.|+.+++++||+.||.++++++|++
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~~~~C~~ 81 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSGPSS 81 (82)
T ss_dssp SCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCCGGGSSCC
T ss_pred CCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCCccEeeCCEEECHHHHhhhcCCCCCC
Confidence 568999999997 66888899999999999999999999888999999999999999999999863
No 42
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.71 E-value=1.3e-18 Score=98.65 Aligned_cols=60 Identities=23% Similarity=0.388 Sum_probs=55.5
Q ss_pred hCCCCCCCCCcccCcEEEEeCccccccccccccCCCcCCCCceeeeCCeeeeccCCCcCC
Q psy17880 61 FGTKCAQCGEYVEGEVVTALGKTYHQKCFTCARCRFSKKREIYNWLGGRAYENRLGGRAY 120 (120)
Q Consensus 61 ~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~~~~~~ 120 (120)
++++|..|+++|.++.|.+.++.||++||+|..|+++|.++.|+..||++||+.++.+.|
T Consensus 4 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 63 (70)
T 2d8z_A 4 GSSGCVQCKKPITTGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLY 63 (70)
T ss_dssp CCCBCSSSCCBCCSSEEESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHT
T ss_pred CCCCCcccCCeeccceEEECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHh
Confidence 568999999999988899999999999999999999999889999999999999886654
No 43
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.71 E-value=1.7e-18 Score=102.74 Aligned_cols=64 Identities=25% Similarity=0.439 Sum_probs=58.5
Q ss_pred HHhHhCCCCCCCCCcccCcEEEEeCccccccccccccCCCcCCCCceeeeCCeeeeccCCCcCC
Q psy17880 57 YQKKFGTKCAQCGEYVEGEVVTALGKTYHQKCFTCARCRFSKKREIYNWLGGRAYENRLGGRAY 120 (120)
Q Consensus 57 ~~~~~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~~~~~~ 120 (120)
+...+.++|..|+++|.+++|.+.++.||++||+|..|+++|.+..|+..+|++||+.++.+.|
T Consensus 20 ~~~~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f 83 (90)
T 2dar_A 20 PAGKRTPMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFF 83 (90)
T ss_dssp CTTTCCCBBSSSCCBCCSCEEEETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHT
T ss_pred CCCCCCCCCccCCCEecceEEEECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHc
Confidence 4556679999999999999999999999999999999999999889999999999999987654
No 44
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.71 E-value=9.8e-18 Score=97.25 Aligned_cols=64 Identities=20% Similarity=0.343 Sum_probs=58.2
Q ss_pred CCccccccccccccceEEECCcccccccccccccccccCCCCeeecCCeeccHhHHHhHhCCCCC
Q psy17880 2 IKAYCTSCKKKCSGEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTKCA 66 (120)
Q Consensus 2 ~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~ 66 (120)
..++|.+|+++|.+++|.++++.||++||+|..|+++|.+. ++.+++++||..||.++++|.+.
T Consensus 14 ~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~-~f~~~g~~yC~~cy~~~f~p~~s 77 (79)
T 2cor_A 14 GKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTAD-ARELKGELYCLPCHDKMGVSGPS 77 (79)
T ss_dssp CCCBCTTTCCBCCSCCCCCSSSCCCTTTSBCSSSCCBCCTT-CEEETTEEECHHHHHTTSCCSSC
T ss_pred CCCCCccCCCEecceEEEECcceeCCCCCEeCCCCCccCCC-CEeECCEEeCHHHHHHhCCCCCC
Confidence 45789999999999999999999999999999999999876 46999999999999999988654
No 45
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.71 E-value=2e-17 Score=96.36 Aligned_cols=64 Identities=27% Similarity=0.664 Sum_probs=59.5
Q ss_pred Cccccccccccc--cceEEECCcccccccccccccccccCCCCeeecCCeeccHhHHHhHhCCCCC
Q psy17880 3 KAYCTSCKKKCS--GEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTKCA 66 (120)
Q Consensus 3 ~~~C~~C~~~i~--~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~ 66 (120)
.++|.+|+++|. +.++.++++.||++||+|..|+++|.+..|+.+++++||+.||.+++++++.
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~~~ 80 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGPS 80 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHTSCCCS
T ss_pred CCcCccCCcccccCceEEEECccccccccCchhhCCCccCCCccEeeCCEEECHHHHHHHhCCCCC
Confidence 578999999997 6689999999999999999999999988899999999999999999998875
No 46
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.70 E-value=1.6e-18 Score=98.03 Aligned_cols=59 Identities=15% Similarity=0.356 Sum_probs=54.6
Q ss_pred hCCCCCCCCCcccCcEEEEeCccccccccccccCCCcCCCCceeeeCCeeeeccCCCcC
Q psy17880 61 FGTKCAQCGEYVEGEVVTALGKTYHQKCFTCARCRFSKKREIYNWLGGRAYENRLGGRA 119 (120)
Q Consensus 61 ~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~~~~~ 119 (120)
++++|..|+++|.++.|.+.++.||++||+|+.|+++|.+..|+..||++||+.++.+.
T Consensus 4 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 62 (69)
T 2cur_A 4 GSSGCVKCNKAITSGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNF 62 (69)
T ss_dssp CCCCCSSSCCCCCTTCEEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHH
T ss_pred CcCCCcccCCEeCcceEEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHH
Confidence 46899999999998899999999999999999999999988999999999999987654
No 47
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.70 E-value=2.8e-18 Score=97.80 Aligned_cols=60 Identities=18% Similarity=0.387 Sum_probs=55.3
Q ss_pred hCCCCCCCCCcccC----cEEEEeCccccccccccccCCCcCCCCceeeeCCeeeeccCCCcCC
Q psy17880 61 FGTKCAQCGEYVEG----EVVTALGKTYHQKCFTCARCRFSKKREIYNWLGGRAYENRLGGRAY 120 (120)
Q Consensus 61 ~~~~C~~C~~~i~~----~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~~~~~~ 120 (120)
++++|..|+++|.+ ++|.+.++.||++||+|+.|+++|.+..|+..||++||+.++.+.|
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~ 67 (72)
T 1x4l_A 4 GSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDIS 67 (72)
T ss_dssp CSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCC
T ss_pred CCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCccc
Confidence 46899999999986 7899999999999999999999999889999999999999987765
No 48
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.70 E-value=2e-18 Score=98.33 Aligned_cols=61 Identities=23% Similarity=0.431 Sum_probs=55.6
Q ss_pred HhCCCCCCCCCccc--CcEEEEeCccccccccccccCCCcCCCCceeeeCCeeeeccCCCcCC
Q psy17880 60 KFGTKCAQCGEYVE--GEVVTALGKTYHQKCFTCARCRFSKKREIYNWLGGRAYENRLGGRAY 120 (120)
Q Consensus 60 ~~~~~C~~C~~~i~--~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~~~~~~ 120 (120)
+++++|..|+++|. +++|.+.++.||++||+|+.|+++|.++.|+..+|++||+.++.+.|
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 65 (72)
T 1wyh_A 3 SGSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKF 65 (72)
T ss_dssp CCCCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHT
T ss_pred ccCCCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHc
Confidence 46789999999997 57899999999999999999999999999999999999999887654
No 49
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.70 E-value=2.5e-18 Score=97.47 Aligned_cols=58 Identities=28% Similarity=0.606 Sum_probs=54.3
Q ss_pred CCCCCCCCCcccCcEEEEeCccccccccccccCCCcCCCCceeeeCCeeeeccCCCcC
Q psy17880 62 GTKCAQCGEYVEGEVVTALGKTYHQKCFTCARCRFSKKREIYNWLGGRAYENRLGGRA 119 (120)
Q Consensus 62 ~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~~~~~ 119 (120)
.++|..|+++|.+++|.+.++.||++||+|..|+++|..+.|+..||++||+.++.+.
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~ 62 (70)
T 2d8x_A 5 SSGCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNRE 62 (70)
T ss_dssp SSBCSSSCCBCCSCCEEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHH
T ss_pred CCcCccCCCEecceEEEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhh
Confidence 4789999999999999999999999999999999999999999999999999988654
No 50
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=4.2e-17 Score=96.91 Aligned_cols=66 Identities=33% Similarity=0.737 Sum_probs=60.6
Q ss_pred Ccccccccccccc-ceEEECCcccccccccccccccccCCCCeeecCCeeccHhHHHhHhCCCCCCC
Q psy17880 3 KAYCTSCKKKCSG-EVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTKCAQC 68 (120)
Q Consensus 3 ~~~C~~C~~~i~~-~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~C 68 (120)
.++|.+|+++|.+ +.+.++++.||++||+|..|+++|....|+.+++++||+.||.++++++|..+
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~~~ 81 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYD 81 (91)
T ss_dssp SCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSCCC
T ss_pred CCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcCcc
Confidence 4689999999964 78899999999999999999999998889999999999999999999999744
No 51
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=2.2e-17 Score=94.39 Aligned_cols=62 Identities=23% Similarity=0.413 Sum_probs=56.7
Q ss_pred CCccccccccccccceEEECCcccccccccccccccccC-CCCeeecCCeeccHhHHHhHhCC
Q psy17880 2 IKAYCTSCKKKCSGEVLRVQDKYFHITCFQCSVCKNSLA-QGGYFNKDGAYYCTSDYQKKFGT 63 (120)
Q Consensus 2 ~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~~~~~~~C~~c~~~~~~~ 63 (120)
..++|.+|+++|.+++|.++++.||++||+|..|+++|. +..|+.+++++||..||.++++.
T Consensus 4 ~~~~C~~C~~~I~~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~ 66 (73)
T 1wig_A 4 GSSGCDSCEKYITGRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTE 66 (73)
T ss_dssp SCCSCSSSCCCCSSCCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSS
T ss_pred CcCCcccCCCEecCeeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhcc
Confidence 457899999999999999999999999999999999998 66899999999999999987754
No 52
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=4.9e-17 Score=92.52 Aligned_cols=65 Identities=23% Similarity=0.576 Sum_probs=57.6
Q ss_pred CCcccccccccccc--ceEEECCcccccccccccccccccCCCCeeecCCeeccHhHHHhHhCCCCCC
Q psy17880 2 IKAYCTSCKKKCSG--EVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTKCAQ 67 (120)
Q Consensus 2 ~~~~C~~C~~~i~~--~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~ 67 (120)
..++|.+|+++|.+ .++.++++.||++||+|..|+++|.+..|+.+++++||+.||.+++ .+|..
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~-~~~~~ 70 (72)
T 1x61_A 4 GSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATL-ESGPS 70 (72)
T ss_dssp CCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHH-HTCSS
T ss_pred CCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHH-ccCCC
Confidence 46789999999964 5889999999999999999999998778999999999999999988 44543
No 53
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=1.7e-17 Score=95.44 Aligned_cols=60 Identities=25% Similarity=0.531 Sum_probs=54.4
Q ss_pred hCCCCCCCCCccc-CcEEEEeCccccccccccccCCCcCCCCceeeeCCeeeec-cCCCcCC
Q psy17880 61 FGTKCAQCGEYVE-GEVVTALGKTYHQKCFTCARCRFSKKREIYNWLGGRAYEN-RLGGRAY 120 (120)
Q Consensus 61 ~~~~C~~C~~~i~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~-~~~~~~~ 120 (120)
++++|..|+++|. ++.|.+.++.||++||+|..|+++|.++.|+..||++||+ .++.+.|
T Consensus 8 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f 69 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLF 69 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHS
T ss_pred CCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhc
Confidence 4589999999997 7899999999999999999999999988999999999999 6876544
No 54
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.67 E-value=1.9e-17 Score=92.62 Aligned_cols=57 Identities=18% Similarity=0.359 Sum_probs=51.1
Q ss_pred hCCCCCCCCCccc--CcEEEEeCcccc--ccccccccCCCcCCCCceeeeCCeeee-ccCCC
Q psy17880 61 FGTKCAQCGEYVE--GEVVTALGKTYH--QKCFTCARCRFSKKREIYNWLGGRAYE-NRLGG 117 (120)
Q Consensus 61 ~~~~C~~C~~~i~--~~~~~~~~~~~H--~~Cf~C~~C~~~l~~~~~~~~~g~~yC-~~~~~ 117 (120)
|+++|..|+++|. ++.|++.++.|| ++||+|+.|+++|.++.|+..||+||| +.++.
T Consensus 1 fa~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~ 62 (65)
T 2iyb_E 1 HAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKK 62 (65)
T ss_dssp -CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHH
T ss_pred CcCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhh
Confidence 4678999999997 689999999999 999999999999999999999999999 55543
No 55
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.67 E-value=7.9e-17 Score=107.63 Aligned_cols=69 Identities=32% Similarity=0.623 Sum_probs=64.5
Q ss_pred ccccccccccc-cceEEECCcccccccccccccccccCCCCeeecCCeeccHhHHHhHhCCCCCCCCCcc
Q psy17880 4 AYCTSCKKKCS-GEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTKCAQCGEYV 72 (120)
Q Consensus 4 ~~C~~C~~~i~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~C~~~i 72 (120)
++|.+|+++|. ++.|.++++.||++||+|..|+++|.++.|+.+++++||+.||.++++++|..|++++
T Consensus 116 ~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~kc~~C~~~~ 185 (192)
T 1b8t_A 116 DGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQGA 185 (192)
T ss_dssp EECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHTCCCCCCCCCCC
T ss_pred CcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCcccccCCEEeCHHHHHHhcCCcCCCCCCcc
Confidence 46999999996 5678899999999999999999999888899999999999999999999999999985
No 56
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=1.1e-17 Score=97.01 Aligned_cols=58 Identities=19% Similarity=0.344 Sum_probs=53.3
Q ss_pred CCCCCCCCCcccCcEEEEeCccccccccccccCCCcCCCCceeeeCCeeeeccCCCcCC
Q psy17880 62 GTKCAQCGEYVEGEVVTALGKTYHQKCFTCARCRFSKKREIYNWLGGRAYENRLGGRAY 120 (120)
Q Consensus 62 ~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~~~~~~ 120 (120)
.++|..|+++|.+++|.+.++.||++||+|..|+++|.++.| ..||++||+.++.+.|
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f-~~~g~~yC~~cy~~~f 72 (79)
T 2cor_A 15 KYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADAR-ELKGELYCLPCHDKMG 72 (79)
T ss_dssp CCBCTTTCCBCCSCCCCCSSSCCCTTTSBCSSSCCBCCTTCE-EETTEEECHHHHHTTS
T ss_pred CCCCccCCCEecceEEEECcceeCCCCCEeCCCCCccCCCCE-eECCEEeCHHHHHHhC
Confidence 589999999999989999999999999999999999998765 8899999999987765
No 57
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.66 E-value=7.8e-18 Score=95.66 Aligned_cols=61 Identities=25% Similarity=0.527 Sum_probs=54.7
Q ss_pred HhCCCCCCCCCcccC-c-EEEEeCccccccccccccCCCcCCCCceeeeCCeeeeccCCCcCC
Q psy17880 60 KFGTKCAQCGEYVEG-E-VVTALGKTYHQKCFTCARCRFSKKREIYNWLGGRAYENRLGGRAY 120 (120)
Q Consensus 60 ~~~~~C~~C~~~i~~-~-~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~~~~~~ 120 (120)
.++++|..|+++|.+ + +|.+.++.||++||+|+.|+++|..+.|+..||++||+.++.+.|
T Consensus 9 ~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf 71 (72)
T 3f6q_B 9 SASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLF 71 (72)
T ss_dssp CTTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHT
T ss_pred cCCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhh
Confidence 456899999999974 3 678999999999999999999999889999999999999987765
No 58
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=3.5e-17 Score=94.12 Aligned_cols=58 Identities=29% Similarity=0.557 Sum_probs=52.8
Q ss_pred CCCCCCCCccc-CcEEEEeCccccccccccccCCCcCCCCceeeeCCeeeec-cCCCcCC
Q psy17880 63 TKCAQCGEYVE-GEVVTALGKTYHQKCFTCARCRFSKKREIYNWLGGRAYEN-RLGGRAY 120 (120)
Q Consensus 63 ~~C~~C~~~i~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~-~~~~~~~ 120 (120)
|+|..|+++|. ++.|.+.++.||++||+|..|+++|.++.|+..||++||+ .++.+.|
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f 60 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMF 60 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHS
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHh
Confidence 57999999997 7899999999999999999999999998999999999999 5876543
No 59
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=1.2e-17 Score=95.04 Aligned_cols=59 Identities=31% Similarity=0.558 Sum_probs=53.5
Q ss_pred hCCCCCCCCCcccC--cEEEEeCccccccccccccCCCcCCCCceeeeCCeeeeccCCCcC
Q psy17880 61 FGTKCAQCGEYVEG--EVVTALGKTYHQKCFTCARCRFSKKREIYNWLGGRAYENRLGGRA 119 (120)
Q Consensus 61 ~~~~C~~C~~~i~~--~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~~~~~ 119 (120)
++++|..|+++|.+ .+|.+.++.||++||+|..|+++|.+..|+..||++||+.++.+.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 64 (72)
T 1x61_A 4 GSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVAT 64 (72)
T ss_dssp CCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHH
T ss_pred CCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHH
Confidence 46899999999974 589999999999999999999999888899999999999988654
No 60
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=1.9e-17 Score=97.97 Aligned_cols=59 Identities=31% Similarity=0.589 Sum_probs=54.8
Q ss_pred CCCCCCCCCcccCcEEEEeCccccccccccccCCCcCCCCceeeeCCeeeeccCCCcCC
Q psy17880 62 GTKCAQCGEYVEGEVVTALGKTYHQKCFTCARCRFSKKREIYNWLGGRAYENRLGGRAY 120 (120)
Q Consensus 62 ~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~~~~~~ 120 (120)
.++|..|+++|.+++|.+.++.||++||+|..|+++|..+.|+..||++||+.|+.+.|
T Consensus 25 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f 83 (89)
T 1x64_A 25 MPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARART 83 (89)
T ss_dssp CCBCTTTCCBCCSCCEESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHS
T ss_pred CCCcccCCCEecccEEEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHh
Confidence 47899999999999999999999999999999999999889999999999999987654
No 61
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=3.5e-17 Score=95.12 Aligned_cols=57 Identities=28% Similarity=0.558 Sum_probs=52.2
Q ss_pred CCCCCCCCccc-CcEEEEeCccccccccccccCCCcCCCCceeeeCCeeeeccCCCcCC
Q psy17880 63 TKCAQCGEYVE-GEVVTALGKTYHQKCFTCARCRFSKKREIYNWLGGRAYENRLGGRAY 120 (120)
Q Consensus 63 ~~C~~C~~~i~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~~~~~~ 120 (120)
++|..|+++|. +++|.+.++.||++||+|..|+++|.+ .|+..||++||+.|+.+.|
T Consensus 16 ~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~f 73 (80)
T 2dj7_A 16 SHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQF 73 (80)
T ss_dssp SCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHT
T ss_pred CCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHc
Confidence 78999999996 788999999999999999999999985 6899999999999987655
No 62
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.65 E-value=1.2e-16 Score=90.70 Aligned_cols=61 Identities=28% Similarity=0.731 Sum_probs=55.0
Q ss_pred CCcccccccccccc-c-eEEECCcccccccccccccccccCCCCeeecCCeeccHhHHHhHhC
Q psy17880 2 IKAYCTSCKKKCSG-E-VLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFG 62 (120)
Q Consensus 2 ~~~~C~~C~~~i~~-~-~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~ 62 (120)
..++|.+|+++|.+ + ++.+.++.||++||+|+.|+++|.++.++.+++++||+.||.++|+
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred CCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence 46789999999963 3 6789999999999999999999988789999999999999998874
No 63
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=1.6e-16 Score=92.38 Aligned_cols=64 Identities=19% Similarity=0.507 Sum_probs=57.7
Q ss_pred CccccccccccccceEEECCcccccccccccccccccCC-CCee-ecCCeeccHhHHHhHhCCCCC
Q psy17880 3 KAYCTSCKKKCSGEVLRVQDKYFHITCFQCSVCKNSLAQ-GGYF-NKDGAYYCTSDYQKKFGTKCA 66 (120)
Q Consensus 3 ~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~-~~~~-~~~~~~~C~~c~~~~~~~~C~ 66 (120)
.++|.+|+++|.++++.++++.||++||+|..|+++|.. ..|. .+++++||+.||.+++++.++
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~~~s 80 (81)
T 1x6a_A 15 GEFCHGCSLLMTGPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGPSS 80 (81)
T ss_dssp SCBCTTTCCBCCSCCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCTTSC
T ss_pred CCcCccCCCCcCceEEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcCCCC
Confidence 468999999999889999999999999999999999975 4666 589999999999999988775
No 64
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=8e-17 Score=93.99 Aligned_cols=59 Identities=27% Similarity=0.429 Sum_probs=53.1
Q ss_pred CCCCCCCCCccc-CcEEEEeCccccccccccccCCCcCCCCcee--eeCCeeeeccCCCcCC
Q psy17880 62 GTKCAQCGEYVE-GEVVTALGKTYHQKCFTCARCRFSKKREIYN--WLGGRAYENRLGGRAY 120 (120)
Q Consensus 62 ~~~C~~C~~~i~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~--~~~g~~yC~~~~~~~~ 120 (120)
.++|..|+++|. ++.|.+.++.||++||+|+.|+++|..+.|. ..||++||+.|+.+.|
T Consensus 15 ~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~ 76 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTD 76 (82)
T ss_dssp SCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCC
T ss_pred CCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhh
Confidence 378999999994 6788899999999999999999999999888 4699999999998865
No 65
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=5.4e-18 Score=98.30 Aligned_cols=58 Identities=19% Similarity=0.447 Sum_probs=53.8
Q ss_pred CCCCCCCCCcccCcEEEEeCccccccccccccCCCcCCCCceeeeCCeeeeccCCCcC
Q psy17880 62 GTKCAQCGEYVEGEVVTALGKTYHQKCFTCARCRFSKKREIYNWLGGRAYENRLGGRA 119 (120)
Q Consensus 62 ~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~~~~~ 119 (120)
.++|..|+++|.+++|.+.++.||++||+|..|+++|....|+..||++||+.|+.+.
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~ 72 (79)
T 1x62_A 15 LPMCDKCGTGIVGVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARER 72 (79)
T ss_dssp CCCCSSSCCCCCSSCEECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHH
T ss_pred CCccccCCCCccCcEEEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHH
Confidence 4799999999999999999999999999999999999888899999999999988654
No 66
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=2.6e-17 Score=94.78 Aligned_cols=60 Identities=23% Similarity=0.526 Sum_probs=54.2
Q ss_pred hCCCCCCCCCccc--CcEEEEeCccccccccccccCCCcCCCCceeeeCCeeeeccCCCcCC
Q psy17880 61 FGTKCAQCGEYVE--GEVVTALGKTYHQKCFTCARCRFSKKREIYNWLGGRAYENRLGGRAY 120 (120)
Q Consensus 61 ~~~~C~~C~~~i~--~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~~~~~~ 120 (120)
++++|..|+++|. +.+|.+.++.||++||+|..|+++|.++.|+..||++||+.++.+.|
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f 71 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLF 71 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHC
T ss_pred CCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHh
Confidence 3589999999995 56789999999999999999999999889999999999999987654
No 67
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.64 E-value=4.4e-17 Score=94.79 Aligned_cols=59 Identities=31% Similarity=0.633 Sum_probs=53.6
Q ss_pred CCCCCCCCCccc-CcEEEEeCccccccccccccCCCcCCCCceeeeCCeeeeccCCCcCC
Q psy17880 62 GTKCAQCGEYVE-GEVVTALGKTYHQKCFTCARCRFSKKREIYNWLGGRAYENRLGGRAY 120 (120)
Q Consensus 62 ~~~C~~C~~~i~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~~~~~~ 120 (120)
.++|..|+++|. ++.|.+.++.||++||+|+.|+++|..+.|+..||++||+.++.+.|
T Consensus 7 ~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 66 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKY 66 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHC
T ss_pred CCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHh
Confidence 589999999994 78999999999999999999999999989999999999999886654
No 68
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=2.2e-16 Score=90.91 Aligned_cols=57 Identities=26% Similarity=0.621 Sum_probs=53.2
Q ss_pred Ccccccccccccc-----ceEEECCcccccccccccccccccCCCCeeecCCeeccHhHHHh
Q psy17880 3 KAYCTSCKKKCSG-----EVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQK 59 (120)
Q Consensus 3 ~~~C~~C~~~i~~-----~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~ 59 (120)
.++|++|+++|.+ +++.++++.||++||+|+.|+++|.+..|+.+++++||+.||.+
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~~ 76 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKK 76 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSCCCEETTEECCHHHHHH
T ss_pred CccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCccEeECCEEEChHHhcc
Confidence 5789999999986 78999999999999999999999998889999999999999975
No 69
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.63 E-value=2e-16 Score=88.40 Aligned_cols=58 Identities=19% Similarity=0.547 Sum_probs=53.2
Q ss_pred Cccccccccccc--cceEEECCcccc--cccccccccccccCCCCeeecCCeecc-HhHHHhH
Q psy17880 3 KAYCTSCKKKCS--GEVLRVQDKYFH--ITCFQCSVCKNSLAQGGYFNKDGAYYC-TSDYQKK 60 (120)
Q Consensus 3 ~~~C~~C~~~i~--~~~~~~~~~~~H--~~Cf~C~~C~~~l~~~~~~~~~~~~~C-~~c~~~~ 60 (120)
.++|.+|+++|. ++.+.++++.|| ++||+|+.|+++|.+..|+.+++++|| .+||.++
T Consensus 2 a~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 2 AVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred cCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 468999999997 679999999999 999999999999998889999999999 8898753
No 70
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.63 E-value=1.6e-16 Score=95.91 Aligned_cols=60 Identities=20% Similarity=0.428 Sum_probs=55.2
Q ss_pred hCCCCCCCCCccc--CcEEEEeCccccccccccccCCCcCCCCceeeeCCeeeeccCCCcCC
Q psy17880 61 FGTKCAQCGEYVE--GEVVTALGKTYHQKCFTCARCRFSKKREIYNWLGGRAYENRLGGRAY 120 (120)
Q Consensus 61 ~~~~C~~C~~~i~--~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~~~~~~ 120 (120)
++++|..|+++|. +++|.+.++.||++||+|..|+++|.++.|+..||++||+.++.+.|
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~ 65 (101)
T 2cup_A 4 GSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTRED 65 (101)
T ss_dssp CCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCC
T ss_pred CCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhc
Confidence 4689999999995 67999999999999999999999999888999999999999987765
No 71
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.62 E-value=3.9e-16 Score=97.50 Aligned_cols=71 Identities=25% Similarity=0.591 Sum_probs=63.4
Q ss_pred ccccccccccc--cceEEECCcccccccccccccccccC-CCCeeecCCeeccHhHHHhHhCCCCCCCCCcccC
Q psy17880 4 AYCTSCKKKCS--GEVLRVQDKYFHITCFQCSVCKNSLA-QGGYFNKDGAYYCTSDYQKKFGTKCAQCGEYVEG 74 (120)
Q Consensus 4 ~~C~~C~~~i~--~~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~~~~~~~C~~c~~~~~~~~C~~C~~~i~~ 74 (120)
..|.+|+++|. +.++.+.++.||++||+|..|+++|. +..|+..++++||..||.++++++|..++.++.+
T Consensus 9 ~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~~~ 82 (123)
T 2l3k_A 9 GLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGGSGGSG 82 (123)
T ss_dssp CCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHTCCCCCCSCC
T ss_pred CcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccccCCCCCCCcc
Confidence 48999999997 45778999999999999999999994 4479999999999999999999999998887753
No 72
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.62 E-value=4.7e-16 Score=97.17 Aligned_cols=60 Identities=32% Similarity=0.756 Sum_probs=54.5
Q ss_pred Cccccccccccccc-eEEECCcccccccccccccccccC--CCCeeecCCeeccHhHHHhHhC
Q psy17880 3 KAYCTSCKKKCSGE-VLRVQDKYFHITCFQCSVCKNSLA--QGGYFNKDGAYYCTSDYQKKFG 62 (120)
Q Consensus 3 ~~~C~~C~~~i~~~-~~~~~~~~~H~~Cf~C~~C~~~l~--~~~~~~~~~~~~C~~c~~~~~~ 62 (120)
.++|.+|+++|.+. ++.++++.||++||+|..|+++|. +..|+.+++++||+.||.++|+
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 46899999999877 689999999999999999999997 3579999999999999999874
No 73
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.61 E-value=2e-16 Score=99.06 Aligned_cols=60 Identities=23% Similarity=0.355 Sum_probs=54.7
Q ss_pred hCCCCCCCCCccc-CcEEEEeCccccccccccccCCCcCCCCceeeeCCeeeeccCCCcCC
Q psy17880 61 FGTKCAQCGEYVE-GEVVTALGKTYHQKCFTCARCRFSKKREIYNWLGGRAYENRLGGRAY 120 (120)
Q Consensus 61 ~~~~C~~C~~~i~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~~~~~~ 120 (120)
++++|..|+++|. +++|.+.|+.||++||+|+.|+++|.+..|+..||++||+.++.+.|
T Consensus 2 ~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~ 62 (126)
T 2xqn_T 2 EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH 62 (126)
T ss_dssp CCCBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS
T ss_pred cCCCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCc
Confidence 4689999999997 57899999999999999999999999989999999999999886543
No 74
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.60 E-value=1.2e-16 Score=99.87 Aligned_cols=60 Identities=18% Similarity=0.368 Sum_probs=54.1
Q ss_pred hCCCCCCCCCcccCc-EEEEeCccccccccccccCCCcCC--CCceeeeCCeeeeccCCCcCC
Q psy17880 61 FGTKCAQCGEYVEGE-VVTALGKTYHQKCFTCARCRFSKK--REIYNWLGGRAYENRLGGRAY 120 (120)
Q Consensus 61 ~~~~C~~C~~~i~~~-~~~~~~~~~H~~Cf~C~~C~~~l~--~~~~~~~~g~~yC~~~~~~~~ 120 (120)
+.++|..|+++|.+. +|.+.++.||++||+|..|+++|. +..|+..||++||+.|+.+.|
T Consensus 60 ~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~F 122 (123)
T 2l4z_A 60 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLF 122 (123)
T ss_dssp SCSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHC
T ss_pred cCCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhc
Confidence 357999999999876 699999999999999999999997 467999999999999998766
No 75
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=1.8e-16 Score=94.12 Aligned_cols=59 Identities=25% Similarity=0.484 Sum_probs=53.7
Q ss_pred CCCCCCCCCcccC-cEEEEeCccccccccccccCCCcCCCCceeeeCCeeeeccCCCcCC
Q psy17880 62 GTKCAQCGEYVEG-EVVTALGKTYHQKCFTCARCRFSKKREIYNWLGGRAYENRLGGRAY 120 (120)
Q Consensus 62 ~~~C~~C~~~i~~-~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~~~~~~ 120 (120)
.++|..|+++|.+ +.|.+.++.||++||+|..|+++|..+.|+..||++||+.|+.+.|
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f 74 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLF 74 (91)
T ss_dssp SCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHS
T ss_pred CCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHh
Confidence 4799999999964 7889999999999999999999999988999999999999886654
No 76
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=2.8e-16 Score=91.65 Aligned_cols=63 Identities=30% Similarity=0.686 Sum_probs=55.2
Q ss_pred Ccccccccccc-ccceEEECCcccccccccccccccccCCCCee--ecCCeeccHhHHHhHhCCCC
Q psy17880 3 KAYCTSCKKKC-SGEVLRVQDKYFHITCFQCSVCKNSLAQGGYF--NKDGAYYCTSDYQKKFGTKC 65 (120)
Q Consensus 3 ~~~C~~C~~~i-~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~--~~~~~~~C~~c~~~~~~~~C 65 (120)
.++|.+|+++| .++.+.++++.||++||+|..|+++|....|+ .+++++||+.||.++++...
T Consensus 15 ~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~ 80 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSGPS 80 (82)
T ss_dssp SCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCCCC
T ss_pred CCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcCCC
Confidence 56899999999 46778899999999999999999999988877 47999999999998876543
No 77
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.58 E-value=1.3e-16 Score=99.69 Aligned_cols=62 Identities=24% Similarity=0.487 Sum_probs=53.9
Q ss_pred HHhHhCC--CCCCCCCccc--CcEEEEeCccccccccccccCCCcCC-CCceeeeCCeeeeccCCCc
Q psy17880 57 YQKKFGT--KCAQCGEYVE--GEVVTALGKTYHQKCFTCARCRFSKK-REIYNWLGGRAYENRLGGR 118 (120)
Q Consensus 57 ~~~~~~~--~C~~C~~~i~--~~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~~~g~~yC~~~~~~ 118 (120)
|.++|++ +|..|+++|. +.+|.+.++.||++||+|..|+++|. +..|+..+|++||+.++.+
T Consensus 1 Y~r~fg~~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~ 67 (123)
T 2l3k_A 1 YLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYE 67 (123)
T ss_dssp CCSSSSSSCCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHH
T ss_pred ChhhhCCCCcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHH
Confidence 3456777 9999999997 46789999999999999999999995 5579999999999998754
No 78
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=2.3e-16 Score=97.35 Aligned_cols=59 Identities=19% Similarity=0.358 Sum_probs=52.6
Q ss_pred CCCCCCCCCcccCc-EEEEeCccccccccccccCCCcCCC--CceeeeCCeeeeccCCCcCC
Q psy17880 62 GTKCAQCGEYVEGE-VVTALGKTYHQKCFTCARCRFSKKR--EIYNWLGGRAYENRLGGRAY 120 (120)
Q Consensus 62 ~~~C~~C~~~i~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~--~~~~~~~g~~yC~~~~~~~~ 120 (120)
.++|+.|+++|.+. +|.+.++.||++||+|+.|+++|.. ..|+..||+|||+.|+.+.|
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f 64 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLG 64 (114)
T ss_dssp CBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHH
T ss_pred CCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHh
Confidence 37899999999876 8999999999999999999999975 57999999999999886543
No 79
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=3.7e-16 Score=97.50 Aligned_cols=59 Identities=19% Similarity=0.345 Sum_probs=52.5
Q ss_pred hCCCCCCCCCcccCc-EEEEeCccccccccccccCCCcCC--CCceeeeCCeeeeccCCCcC
Q psy17880 61 FGTKCAQCGEYVEGE-VVTALGKTYHQKCFTCARCRFSKK--REIYNWLGGRAYENRLGGRA 119 (120)
Q Consensus 61 ~~~~C~~C~~~i~~~-~~~~~~~~~H~~Cf~C~~C~~~l~--~~~~~~~~g~~yC~~~~~~~ 119 (120)
+.++|+.|+++|.+. +|.+.++.||++||+|+.|+++|. +..|+..||++||+.|+.+.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~ 65 (122)
T 1m3v_A 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRL 65 (122)
T ss_dssp CCCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHH
T ss_pred CCCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHH
Confidence 458999999999876 689999999999999999999997 35799999999999988654
No 80
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.51 E-value=3.4e-15 Score=93.92 Aligned_cols=57 Identities=19% Similarity=0.419 Sum_probs=51.2
Q ss_pred CCCCCCCCcccCc-EEEEeCccccccccccccCCCcCCC--CceeeeCCeeeeccCCCcC
Q psy17880 63 TKCAQCGEYVEGE-VVTALGKTYHQKCFTCARCRFSKKR--EIYNWLGGRAYENRLGGRA 119 (120)
Q Consensus 63 ~~C~~C~~~i~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~--~~~~~~~g~~yC~~~~~~~ 119 (120)
++|..|+++|.+. +|.+.++.||++||+|+.|+++|+. ..|+..||++||+.|+.+.
T Consensus 3 ~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~ 62 (131)
T 2xjy_A 3 LTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRL 62 (131)
T ss_dssp CBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHH
T ss_pred ccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhh
Confidence 6899999999876 7899999999999999999999963 5799999999999987653
No 81
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=9.4e-15 Score=84.82 Aligned_cols=59 Identities=27% Similarity=0.559 Sum_probs=51.3
Q ss_pred CccccccccccccceEEECCcccccccccccccccccCCCCeeecCC-eeccHhHHHhHh
Q psy17880 3 KAYCTSCKKKCSGEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDG-AYYCTSDYQKKF 61 (120)
Q Consensus 3 ~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~-~~~C~~c~~~~~ 61 (120)
.++|.+|+++|.++++.++++.||++||+|..|+++|..+.++..++ .+||..||.+.+
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~ 74 (81)
T 1v6g_A 15 GTRCFSCDQFIEGEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVS 74 (81)
T ss_dssp CCBCTTTCCBCCSCCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCS
T ss_pred CCcCccccCEeccceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccC
Confidence 46899999999999999999999999999999999998766665555 579999997655
No 82
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.48 E-value=5e-15 Score=98.09 Aligned_cols=72 Identities=18% Similarity=0.355 Sum_probs=59.5
Q ss_pred CCeeccHhHHH---hHhCCCCCCCCCcccCc-EEEEeCccccccccccccCCCcCCCCceeeeCCeeeeccCCCcCC
Q psy17880 48 DGAYYCTSDYQ---KKFGTKCAQCGEYVEGE-VVTALGKTYHQKCFTCARCRFSKKREIYNWLGGRAYENRLGGRAY 120 (120)
Q Consensus 48 ~~~~~C~~c~~---~~~~~~C~~C~~~i~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~~~~~~ 120 (120)
++..+|...+. ....++|..|+++|.+. ++.+.++.||++||+|+.|+++|.+..| ..||++||+.|+.+.|
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f 118 (182)
T 2jtn_A 43 DDEGGSGGHMGSGGTPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRF 118 (182)
T ss_dssp SSSCSSSSSCCCCCCCSCCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCE-EETTEEECHHHHHHTT
T ss_pred ccccccccccccCCCCCCCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCce-eECCEeeecCcccccc
Confidence 45567776654 33348999999999875 6789999999999999999999988776 6899999999987654
No 83
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.45 E-value=9.4e-15 Score=97.27 Aligned_cols=59 Identities=19% Similarity=0.349 Sum_probs=52.8
Q ss_pred hCCCCCCCCCcccCc-EEEEeCccccccccccccCCCcCCC--CceeeeCCeeeeccCCCcC
Q psy17880 61 FGTKCAQCGEYVEGE-VVTALGKTYHQKCFTCARCRFSKKR--EIYNWLGGRAYENRLGGRA 119 (120)
Q Consensus 61 ~~~~C~~C~~~i~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~--~~~~~~~g~~yC~~~~~~~ 119 (120)
..++|..|+++|.+. +|.+.++.||++||+|+.|+++|.. ..|+..||++||+.|+.+.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~ 65 (188)
T 1rut_X 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRL 65 (188)
T ss_dssp CCCBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHH
T ss_pred CCCcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccc
Confidence 458999999999876 6899999999999999999999975 6899999999999987653
No 84
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.39 E-value=4.1e-14 Score=92.67 Aligned_cols=57 Identities=21% Similarity=0.471 Sum_probs=50.1
Q ss_pred CCCCCCCCCcccCc-EEEEeCccccccccccccCCCcCCCCceeeeCCeeeeccCCCcC
Q psy17880 62 GTKCAQCGEYVEGE-VVTALGKTYHQKCFTCARCRFSKKREIYNWLGGRAYENRLGGRA 119 (120)
Q Consensus 62 ~~~C~~C~~~i~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~~~~~ 119 (120)
.++|..|+++|.+. +|.+.|+.||++||+|+.|+++|.+..| ..||++||+.|+.+.
T Consensus 6 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~ 63 (169)
T 2rgt_A 6 IPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKR 63 (169)
T ss_dssp -CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCCE-ESSSCEECHHHHHHH
T ss_pred CCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCCc-ccCCeeeeccccccc
Confidence 47999999999875 6889999999999999999999988775 789999999887553
No 85
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=98.11 E-value=7.4e-07 Score=42.05 Aligned_cols=29 Identities=31% Similarity=0.769 Sum_probs=25.4
Q ss_pred CCcccccccccc-ccceEEECCcccccccc
Q psy17880 2 IKAYCTSCKKKC-SGEVLRVQDKYFHITCF 30 (120)
Q Consensus 2 ~~~~C~~C~~~i-~~~~~~~~~~~~H~~Cf 30 (120)
|...|..|++++ ..+.+.+.|+.||..||
T Consensus 2 m~~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 2 MNPNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CCCBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CCCcCCccCCEEecceeEEECCeEecccCC
Confidence 678999999998 46777889999999997
No 86
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=98.03 E-value=8.6e-07 Score=41.81 Aligned_cols=28 Identities=43% Similarity=0.930 Sum_probs=24.6
Q ss_pred CCCCCCCCCcc-cCcEEEEeCcccccccc
Q psy17880 62 GTKCAQCGEYV-EGEVVTALGKTYHQKCF 89 (120)
Q Consensus 62 ~~~C~~C~~~i-~~~~~~~~~~~~H~~Cf 89 (120)
+++|..|++.+ ..+.|.+.|+.||..||
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CCcCCccCCEEecceeEEECCeEecccCC
Confidence 47899999999 45788899999999998
No 87
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=94.22 E-value=0.012 Score=35.83 Aligned_cols=90 Identities=21% Similarity=0.438 Sum_probs=51.1
Q ss_pred ccccccccccccc-------eEEECCcccccccc--------cccccccccCCCCeeecCCeeccHhHHHhHhCCCCCCC
Q psy17880 4 AYCTSCKKKCSGE-------VLRVQDKYFHITCF--------QCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTKCAQC 68 (120)
Q Consensus 4 ~~C~~C~~~i~~~-------~~~~~~~~~H~~Cf--------~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~C 68 (120)
..|..|...+.+. ++..=|..||..|+ .|..|++.+......... .......|..|
T Consensus 8 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~---------i~~~~~~C~iC 78 (133)
T 4ap4_A 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY---------IGSGTVSCPIC 78 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECB---------CSSSSCBCTTT
T ss_pred CCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccccc---------cCCCCCCCCCC
Confidence 3577777665332 33333667777766 677788877654332110 00112567777
Q ss_pred CCcccCc-------EEEEeCcccccccc--------ccccCCCcCCCCc
Q psy17880 69 GEYVEGE-------VVTALGKTYHQKCF--------TCARCRFSKKREI 102 (120)
Q Consensus 69 ~~~i~~~-------~~~~~~~~~H~~Cf--------~C~~C~~~l~~~~ 102 (120)
...+... ++..-|..||..|. .|-.|..++..+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 79 MDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp CCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence 6665321 33344667777766 4778887776554
No 88
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=90.21 E-value=0.26 Score=27.91 Aligned_cols=65 Identities=15% Similarity=0.426 Sum_probs=34.6
Q ss_pred CCccccccccccccceEEECCcccccccccccccccccCCCCeeecCCeeccHhHHHhHhCCCCCCCCCcccCcEEEEeC
Q psy17880 2 IKAYCTSCKKKCSGEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTKCAQCGEYVEGEVVTALG 81 (120)
Q Consensus 2 ~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~C~~~i~~~~~~~~~ 81 (120)
|...|..|+.+|.. .++. +.|..|++.+... ..|..|++++. ++.+-|
T Consensus 1 M~~~CP~C~~~l~~-----~~~~-----~~C~~C~~~~~~~--------------------afCPeCgq~Le--~lkACG 48 (81)
T 2jrp_A 1 MEITCPVCHHALER-----NGDT-----AHCETCAKDFSLQ--------------------ALCPDCRQPLQ--VLKACG 48 (81)
T ss_dssp CCCCCSSSCSCCEE-----CSSE-----EECTTTCCEEEEE--------------------EECSSSCSCCC--EEEETT
T ss_pred CCCCCCCCCCcccc-----CCCc-----eECccccccCCCc--------------------ccCcchhhHHH--HHHhcC
Confidence 34678888877752 1222 3466666654331 24555666553 233333
Q ss_pred ccccccccccccCCCcCCCCc
Q psy17880 82 KTYHQKCFTCARCRFSKKREI 102 (120)
Q Consensus 82 ~~~H~~Cf~C~~C~~~l~~~~ 102 (120)
.. =+.|-.|+..++..+
T Consensus 49 A~----~yFC~~C~~LiSkkr 65 (81)
T 2jrp_A 49 AV----DYFCQNGHGLISKKR 65 (81)
T ss_dssp EE----EECCTTTTCCCCTTS
T ss_pred Cc----CeeeccCCCEeecce
Confidence 22 255677777776554
No 89
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=88.71 E-value=0.81 Score=24.89 Aligned_cols=46 Identities=20% Similarity=0.340 Sum_probs=34.8
Q ss_pred ccccccccccccCCCCeeecCCeeccHhHHHhHhC---CCCCCCCCcccC
Q psy17880 28 TCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFG---TKCAQCGEYVEG 74 (120)
Q Consensus 28 ~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~---~~C~~C~~~i~~ 74 (120)
+-|.|..|...+.+ .....-|..||..|..+.+. ..|..|++++..
T Consensus 7 ~~~~C~IC~~~~~~-Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 7 EYFRCPISLELMKD-PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSCTTTSCCCSS-EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred ccCCCCCccccccC-CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 45788899888765 45567899999999887653 468888888753
No 90
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.60 E-value=0.66 Score=24.44 Aligned_cols=46 Identities=22% Similarity=0.474 Sum_probs=33.3
Q ss_pred ccccccccccccCCCCeeecCCeeccHhHHHhHh---CCCCCCCCCcccC
Q psy17880 28 TCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKF---GTKCAQCGEYVEG 74 (120)
Q Consensus 28 ~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~---~~~C~~C~~~i~~ 74 (120)
+=+.|..|...+... ....=|..||..|..+.+ ...|..|..+|..
T Consensus 14 ~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSP-KQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCEECTTTCCEESSC-CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred cCCCCCCCChHhcCe-eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 346788888877653 445678889999998776 2578888887743
No 91
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.77 E-value=0.94 Score=24.31 Aligned_cols=46 Identities=24% Similarity=0.526 Sum_probs=31.9
Q ss_pred ccccccccccccCCCCee-ecCCeeccHhHHHhHh--CCCCCCCCCcccC
Q psy17880 28 TCFQCSVCKNSLAQGGYF-NKDGAYYCTSDYQKKF--GTKCAQCGEYVEG 74 (120)
Q Consensus 28 ~Cf~C~~C~~~l~~~~~~-~~~~~~~C~~c~~~~~--~~~C~~C~~~i~~ 74 (120)
+-+.|..|...+.. ... ..=+..||..|..+.+ ...|..|.++|..
T Consensus 14 ~~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 14 PYILCSICKGYLID-ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp GGGSCTTTSSCCSS-CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred CCCCCCCCChHHHC-cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 34678888777765 333 3667888998887654 4678888887743
No 92
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=85.48 E-value=0.43 Score=24.97 Aligned_cols=24 Identities=17% Similarity=0.176 Sum_probs=20.4
Q ss_pred ccccCCCcCCCCceeeeCCeeeec
Q psy17880 90 TCARCRFSKKREIYNWLGGRAYEN 113 (120)
Q Consensus 90 ~C~~C~~~l~~~~~~~~~g~~yC~ 113 (120)
.|..|+..++..+-+..||+.||.
T Consensus 9 aC~~C~c~Vs~~eai~~dGK~YCS 32 (55)
T 1jjd_A 9 ACEPCLCNVDPSKAIDRNGLYYCS 32 (55)
T ss_dssp SSTTCCCCBCTTTSEESSSCEESS
T ss_pred cCCCCeeEechHHhhhcCCeEEeh
Confidence 378888888888888899999993
No 93
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=85.46 E-value=0.29 Score=25.48 Aligned_cols=45 Identities=13% Similarity=0.486 Sum_probs=26.0
Q ss_pred ccccccccccCCC-----C-eeecCCeeccHhHHHhHh--CCCCCCCCCcccC
Q psy17880 30 FQCSVCKNSLAQG-----G-YFNKDGAYYCTSDYQKKF--GTKCAQCGEYVEG 74 (120)
Q Consensus 30 f~C~~C~~~l~~~-----~-~~~~~~~~~C~~c~~~~~--~~~C~~C~~~i~~ 74 (120)
+.|..|...+... . ....=|..+|..|..+.+ ...|..|..++..
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 4566666655321 1 334556777777776543 3567777766643
No 94
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.78 E-value=1.3 Score=23.62 Aligned_cols=44 Identities=20% Similarity=0.362 Sum_probs=31.8
Q ss_pred cccccccccccCCCCeeecCCeeccHhHHHhHhC-----CCCCCCCCccc
Q psy17880 29 CFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFG-----TKCAQCGEYVE 73 (120)
Q Consensus 29 Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~-----~~C~~C~~~i~ 73 (120)
-+.|..|...+.. .....=|..||..|..+.+. ..|..|..+|.
T Consensus 20 ~~~C~IC~~~~~~-~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 20 EVICPICLDILQK-PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCBCTTTCSBCSS-EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred CCEeccCCcccCC-eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 4678888877764 34456788899999987663 36888877774
No 95
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=83.45 E-value=0.2 Score=26.79 Aligned_cols=44 Identities=14% Similarity=0.508 Sum_probs=24.2
Q ss_pred ccccccccccCCC-----C-eeecCCeeccHhHHHhHh--CCCCCCCCCccc
Q psy17880 30 FQCSVCKNSLAQG-----G-YFNKDGAYYCTSDYQKKF--GTKCAQCGEYVE 73 (120)
Q Consensus 30 f~C~~C~~~l~~~-----~-~~~~~~~~~C~~c~~~~~--~~~C~~C~~~i~ 73 (120)
+.|..|...+... . ....=|..||..|..+.+ ...|..|..++.
T Consensus 11 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (71)
T 3ng2_A 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 62 (71)
T ss_dssp CBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccC
Confidence 5666666655321 1 334456677777775532 246666666653
No 96
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=81.76 E-value=0.97 Score=26.83 Aligned_cols=45 Identities=22% Similarity=0.382 Sum_probs=33.4
Q ss_pred ccccccccccccCCCCeee-cCCeeccHhHHHhHhCCCCCCCCCccc
Q psy17880 28 TCFQCSVCKNSLAQGGYFN-KDGAYYCTSDYQKKFGTKCAQCGEYVE 73 (120)
Q Consensus 28 ~Cf~C~~C~~~l~~~~~~~-~~~~~~C~~c~~~~~~~~C~~C~~~i~ 73 (120)
+-+.|..|...+.. .... .=|..||..|..+.....|..|..++.
T Consensus 21 ~~~~C~IC~~~~~~-pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILRE-PVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSS-CBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCS
T ss_pred hCCCCCCCChHhhC-ccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCc
Confidence 34678888777754 3444 678888998888777678989988874
No 97
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=81.58 E-value=1.6 Score=25.66 Aligned_cols=42 Identities=17% Similarity=0.312 Sum_probs=27.2
Q ss_pred ccccccccCCCCeeecCCeeccHhHHHhH---hCCCCCCCCCccc
Q psy17880 32 CSVCKNSLAQGGYFNKDGAYYCTSDYQKK---FGTKCAQCGEYVE 73 (120)
Q Consensus 32 C~~C~~~l~~~~~~~~~~~~~C~~c~~~~---~~~~C~~C~~~i~ 73 (120)
|..|+.|+..-.-..-=..++|.+|+... -...|..|..+|.
T Consensus 4 C~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 4 CDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp CTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred cCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 55666666432122333567899998753 3478999999995
No 98
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=81.48 E-value=1.8 Score=22.55 Aligned_cols=45 Identities=24% Similarity=0.489 Sum_probs=28.8
Q ss_pred cccccccc-ccCCCC---eeecCCeeccHhHHHhHh---CCCCCCCCCcccC
Q psy17880 30 FQCSVCKN-SLAQGG---YFNKDGAYYCTSDYQKKF---GTKCAQCGEYVEG 74 (120)
Q Consensus 30 f~C~~C~~-~l~~~~---~~~~~~~~~C~~c~~~~~---~~~C~~C~~~i~~ 74 (120)
+.|..|.. .+.... ....=|..+|..|..+.+ ...|..|.+++..
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 45667766 443321 234567888988887763 2568888888753
No 99
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=81.40 E-value=1.8 Score=21.57 Aligned_cols=43 Identities=16% Similarity=0.447 Sum_probs=20.9
Q ss_pred cccccccccCCC---CeeecCCeeccHhHHHhHh--CCCCCCCCCccc
Q psy17880 31 QCSVCKNSLAQG---GYFNKDGAYYCTSDYQKKF--GTKCAQCGEYVE 73 (120)
Q Consensus 31 ~C~~C~~~l~~~---~~~~~~~~~~C~~c~~~~~--~~~C~~C~~~i~ 73 (120)
.|..|...+... .....=+..+|..|..+.+ ...|..|..+|.
T Consensus 7 ~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 7 GCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred cCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 455555544321 1222335556666665432 255666666554
No 100
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=81.32 E-value=0.6 Score=27.94 Aligned_cols=75 Identities=21% Similarity=0.470 Sum_probs=43.8
Q ss_pred cccccccccc--------ccceEEEC--CcccccccccccccccccCCCCeeecCCeeccHhHHHhHhCCCCCCCCCccc
Q psy17880 4 AYCTSCKKKC--------SGEVLRVQ--DKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTKCAQCGEYVE 73 (120)
Q Consensus 4 ~~C~~C~~~i--------~~~~~~~~--~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~C~~~i~ 73 (120)
.+|..|...- .++.|.-. ++.||+.|+.=..- + .-....+..+|..| ..|..|++.-.
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~---~---~~~~~~~~W~C~~C------~~C~~C~~~~~ 69 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLN---M---TEAVKTYKWQCIEC------KSCILCGTSEN 69 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHH---H---HHHHHHTTCCCGGG------CCCTTTTCCTT
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhh---h---hhccCCCccCcccc------CccCcccccCC
Confidence 5677776543 23455544 67888888642210 0 00123445678777 57999988764
Q ss_pred C-cEEE--EeCccccccccc
Q psy17880 74 G-EVVT--ALGKTYHQKCFT 90 (120)
Q Consensus 74 ~-~~~~--~~~~~~H~~Cf~ 90 (120)
+ .+|. .-++.||..|..
T Consensus 70 ~~~ll~Cd~C~~~yH~~Cl~ 89 (114)
T 2kwj_A 70 DDQLLFCDDCDRGYHMYCLN 89 (114)
T ss_dssp TTTEEECSSSCCEEETTTSS
T ss_pred CCceEEcCCCCccccccccC
Confidence 3 3443 335689988764
No 101
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.09 E-value=1.8 Score=23.70 Aligned_cols=44 Identities=23% Similarity=0.596 Sum_probs=30.5
Q ss_pred cccccccccccCCCCeeecCCeeccHhHHHhHh--CCCCCCCCCccc
Q psy17880 29 CFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKF--GTKCAQCGEYVE 73 (120)
Q Consensus 29 Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~--~~~C~~C~~~i~ 73 (120)
-+.|..|...+.. .....=+..||..|..+.+ ...|..|..++.
T Consensus 15 ~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 15 PFRCFICRQAFQN-PVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CSBCSSSCSBCCS-EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCcCCCchhcC-eeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 3677888777754 3445667888888887654 357888887775
No 102
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=80.72 E-value=2.3 Score=25.96 Aligned_cols=44 Identities=14% Similarity=0.425 Sum_probs=30.1
Q ss_pred ccccccccccCCCCeeecCCeeccHhHHHhHh--CCCCCCCCCcccC
Q psy17880 30 FQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKF--GTKCAQCGEYVEG 74 (120)
Q Consensus 30 f~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~--~~~C~~C~~~i~~ 74 (120)
+.|..|...+.. .....=|..||..|..+.+ ...|..|..+|..
T Consensus 54 ~~C~iC~~~~~~-~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 54 LQCIICSEYFIE-AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp SBCTTTCSBCSS-EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred CCCcccCcccCC-ceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 567888777654 3455667888888876543 2568888877754
No 103
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=80.63 E-value=1.7 Score=24.77 Aligned_cols=44 Identities=20% Similarity=0.474 Sum_probs=29.8
Q ss_pred cccccccccccCCCCeee-cCCeeccHhHHHhHhC--CCCCCCCCccc
Q psy17880 29 CFQCSVCKNSLAQGGYFN-KDGAYYCTSDYQKKFG--TKCAQCGEYVE 73 (120)
Q Consensus 29 Cf~C~~C~~~l~~~~~~~-~~~~~~C~~c~~~~~~--~~C~~C~~~i~ 73 (120)
-+.|..|...+.. .... .=|..||..|..+.+. ..|..|..++.
T Consensus 22 ~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 68 (99)
T 2y43_A 22 LLRCGICFEYFNI-AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVT 68 (99)
T ss_dssp HTBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCcccCChhhCC-cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCC
Confidence 4678888777754 3333 5678888888876553 46777777764
No 104
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=80.45 E-value=2.5 Score=24.54 Aligned_cols=48 Identities=6% Similarity=-0.055 Sum_probs=36.3
Q ss_pred ccccccccccccccCCCCeeecCCeeccHhHHHhHh--CCCCCCCCCcccC
Q psy17880 26 HITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKF--GTKCAQCGEYVEG 74 (120)
Q Consensus 26 H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~--~~~C~~C~~~i~~ 74 (120)
-++-|.|..|...+.+ ......|..||..|-.+.+ ...|..|++++..
T Consensus 26 ~p~~~~CpI~~~~m~d-PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 26 APDEFRDPLMDTLMTD-PVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp CSTTTBCTTTCSBCSS-EEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred CcHhhCCcCccCcccC-CeECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 3567999999888865 5667789999999877654 2577788777743
No 105
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=80.39 E-value=2.2 Score=22.34 Aligned_cols=43 Identities=16% Similarity=0.309 Sum_probs=24.6
Q ss_pred cccccccccCCCCeeecCCeeccHhHHHhHh--CCCCCCCCCccc
Q psy17880 31 QCSVCKNSLAQGGYFNKDGAYYCTSDYQKKF--GTKCAQCGEYVE 73 (120)
Q Consensus 31 ~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~--~~~C~~C~~~i~ 73 (120)
.|..|...+........=+..+|..|..+.+ ...|..|..++.
T Consensus 7 ~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 4556655554322334456667777765432 356777777664
No 106
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=79.69 E-value=2.1 Score=25.44 Aligned_cols=71 Identities=15% Similarity=0.453 Sum_probs=46.8
Q ss_pred CccccccccccccceEEECCcccccccccccccccccCCC------CeeecCCeeccHhHHHhHh--CCCCCCCCCcccC
Q psy17880 3 KAYCTSCKKKCSGEVLRVQDKYFHITCFQCSVCKNSLAQG------GYFNKDGAYYCTSDYQKKF--GTKCAQCGEYVEG 74 (120)
Q Consensus 3 ~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~------~~~~~~~~~~C~~c~~~~~--~~~C~~C~~~i~~ 74 (120)
+..|..|.+++....+... ....+-..|..|...+... .....=|..+|..|..+-. ...|..|..+|..
T Consensus 48 ~~~CP~Cr~~~~~~~l~~l--~i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 48 ANTCPTCRKKINHKRYHPI--YIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp CSBCTTTCCBCTTTCEEEC--BCSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcCcccccccc--ccCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 4578899998865433221 1233456788887776431 1344568899999987543 4789999999964
Q ss_pred c
Q psy17880 75 E 75 (120)
Q Consensus 75 ~ 75 (120)
+
T Consensus 126 ~ 126 (133)
T 4ap4_A 126 K 126 (133)
T ss_dssp G
T ss_pred h
Confidence 3
No 107
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.54 E-value=2.5 Score=22.99 Aligned_cols=44 Identities=18% Similarity=0.409 Sum_probs=31.0
Q ss_pred cccccccccccCCCCeeecCCeeccHhHHHhHh--------CCCCCCCCCccc
Q psy17880 29 CFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKF--------GTKCAQCGEYVE 73 (120)
Q Consensus 29 Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~--------~~~C~~C~~~i~ 73 (120)
=+.|..|...+.. .....=+..||..|..+.+ ...|..|..++.
T Consensus 19 ~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 19 EVTCPICLELLTQ-PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCTTTCSCCSS-CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred CCCCCCCCcccCC-ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 3678888887755 3445667889999987643 357888877774
No 108
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=79.43 E-value=2.1 Score=23.26 Aligned_cols=44 Identities=14% Similarity=0.342 Sum_probs=30.4
Q ss_pred cccccccccccCCCCeeecCCeeccHhHHHhHh--------CCCCCCCCCccc
Q psy17880 29 CFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKF--------GTKCAQCGEYVE 73 (120)
Q Consensus 29 Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~--------~~~C~~C~~~i~ 73 (120)
=+.|..|...+.. .....=+..||..|..+.+ ...|..|..++.
T Consensus 19 ~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 19 EVTCPICLELLKE-PVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp TTSCTTTCSCCSS-CEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred CCCCcCCChhhCc-ceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 4678888877755 3455678889999987643 346777777664
No 109
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.26 E-value=0.4 Score=25.31 Aligned_cols=44 Identities=14% Similarity=0.497 Sum_probs=24.2
Q ss_pred cccccccccccCCC-----C-eeecCCeeccHhHHHhHh--CCCCCCCCCcc
Q psy17880 29 CFQCSVCKNSLAQG-----G-YFNKDGAYYCTSDYQKKF--GTKCAQCGEYV 72 (120)
Q Consensus 29 Cf~C~~C~~~l~~~-----~-~~~~~~~~~C~~c~~~~~--~~~C~~C~~~i 72 (120)
-+.|..|...+... . ....=+..||..|..+.+ ...|..|..+|
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 66 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCC
T ss_pred CCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCcc
Confidence 35666666555321 0 334456677777776543 24566666655
No 110
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=79.25 E-value=3.7 Score=24.31 Aligned_cols=79 Identities=27% Similarity=0.542 Sum_probs=44.9
Q ss_pred cccccccccccceEEEC----CcccccccccccccccccCCCCeeecCCeeccHhHHHhHhCCCCCCCCCcccCcEEEEe
Q psy17880 5 YCTSCKKKCSGEVLRVQ----DKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTKCAQCGEYVEGEVVTAL 80 (120)
Q Consensus 5 ~C~~C~~~i~~~~~~~~----~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~C~~~i~~~~~~~~ 80 (120)
.|..|+. .|++|.-. .+.||..|+. |.. .-.|.-||..| .|..|+++..
T Consensus 17 ~C~~C~~--~G~ll~CD~~~Cp~~fH~~Cl~-------L~~----~P~g~W~Cp~c-------~C~~C~k~~~------- 69 (107)
T 4gne_A 17 YCFQCGD--GGELVMCDKKDCPKAYHLLCLN-------LTQ----PPYGKWECPWH-------QCDECSSAAV------- 69 (107)
T ss_dssp SCTTTCC--CSEEEECCSTTCCCEECTGGGT-------CSS----CCSSCCCCGGG-------BCTTTCSBCC-------
T ss_pred CCCcCCC--CCcEeEECCCCCCcccccccCc-------CCc----CCCCCEECCCC-------CCCcCCCCCC-------
Confidence 4666663 24444433 2568887764 321 12467788886 5888887653
Q ss_pred CccccccccccccCCCcC-----CCCc-eeeeCCeeeeccCCCc
Q psy17880 81 GKTYHQKCFTCARCRFSK-----KREI-YNWLGGRAYENRLGGR 118 (120)
Q Consensus 81 ~~~~H~~Cf~C~~C~~~l-----~~~~-~~~~~g~~yC~~~~~~ 118 (120)
|.|..|...+ .+.- ....+|.+.|..+.-+
T Consensus 70 --------~~C~~Cp~sfC~~c~~g~l~~~~~~~~~c~~~~~~~ 105 (107)
T 4gne_A 70 --------SFCEFCPHSFCKDHEKGALVPSALEGRLCCSEHDPM 105 (107)
T ss_dssp --------EECSSSSCEECTTTCTTSCEECTTTTCEECTTSCTT
T ss_pred --------cCcCCCCcchhhhccCCcceecCCCCceecCCCCCC
Confidence 4455554433 2222 2345788888877643
No 111
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=79.03 E-value=1.1 Score=26.26 Aligned_cols=62 Identities=21% Similarity=0.396 Sum_probs=36.7
Q ss_pred ccccccccccCCCCeeecCCeeccHhHHHhHh-CCCCCCCCCcccCcEEEEeCccccccccccccCCCcCCCCc
Q psy17880 30 FQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKF-GTKCAQCGEYVEGEVVTALGKTYHQKCFTCARCRFSKKREI 102 (120)
Q Consensus 30 f~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~-~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~ 102 (120)
..|..|+.+|.. .++..+|..|..... ...|..|++++. ++.|-|.. =|.|..|+..++...
T Consensus 33 ~~CP~Cq~eL~~-----~g~~~hC~~C~~~f~~~a~CPdC~q~Le--vLkACGAv----dYFC~~chgLiSKkR 95 (101)
T 2jne_A 33 LHCPQCQHVLDQ-----DNGHARCRSCGEFIEMKALCPDCHQPLQ--VLKACGAV----DYFCQHGHGLISKKR 95 (101)
T ss_dssp CBCSSSCSBEEE-----ETTEEEETTTCCEEEEEEECTTTCSBCE--EEEETTEE----EEEETTTTEEECTTT
T ss_pred ccCccCCCccee-----cCCEEECccccchhhccccCcchhhHHH--HHHHhcCc----chhhccCCceeecce
Confidence 567777766643 234445666554321 257888888883 55555431 155777877777654
No 112
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=78.91 E-value=0.7 Score=30.62 Aligned_cols=31 Identities=23% Similarity=0.406 Sum_probs=26.4
Q ss_pred cccccccccccCCCCeeecCCeeccHhHHHh
Q psy17880 29 CFQCSVCKNSLAQGGYFNKDGAYYCTSDYQK 59 (120)
Q Consensus 29 Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~ 59 (120)
=..|+.|+....+..-...+|+++|..|+.+
T Consensus 172 ~~~C~~CGE~~~~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 172 KVRCDVCGEYTYEADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EEECTTTCCEEEGGGCEEETTEEECHHHHHC
T ss_pred ceECCCCCCchhhcceeeeCCcEEChhhhcc
Confidence 3579999999887777788999999999865
No 113
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=77.67 E-value=1.1 Score=24.22 Aligned_cols=44 Identities=18% Similarity=0.456 Sum_probs=30.0
Q ss_pred ccccccccccccCCCCeeec-CCeeccHhHHHhHhC----CCCCCCCCcc
Q psy17880 28 TCFQCSVCKNSLAQGGYFNK-DGAYYCTSDYQKKFG----TKCAQCGEYV 72 (120)
Q Consensus 28 ~Cf~C~~C~~~l~~~~~~~~-~~~~~C~~c~~~~~~----~~C~~C~~~i 72 (120)
+-+.|..|...+.. ..... =+..||..|..+.+. ..|..|.+++
T Consensus 14 ~~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 62 (74)
T 2yur_A 14 DELLCLICKDIMTD-AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 62 (74)
T ss_dssp GGGSCSSSCCCCTT-CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSS
T ss_pred CCCCCcCCChHHhC-CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcC
Confidence 34678888777764 34455 488889888876653 4677777764
No 114
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=77.50 E-value=3.7 Score=22.86 Aligned_cols=47 Identities=6% Similarity=-0.041 Sum_probs=35.6
Q ss_pred cccccccccccccCCCCeeecCCeeccHhHHHhHh--CCCCCCCCCcccC
Q psy17880 27 ITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKF--GTKCAQCGEYVEG 74 (120)
Q Consensus 27 ~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~--~~~C~~C~~~i~~ 74 (120)
++-|.|..|...+.+ ......|..||..|-.+.+ ...|..|++++..
T Consensus 12 p~~~~CpI~~~~m~d-PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD-PVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcC-CeECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 456899999888865 5666789999998876554 3678888887743
No 115
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.18 E-value=3 Score=22.13 Aligned_cols=44 Identities=14% Similarity=0.292 Sum_probs=28.7
Q ss_pred cccccccccccCCCCeeecCCeeccHhHHHhHhC--CCCCCCCCccc
Q psy17880 29 CFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFG--TKCAQCGEYVE 73 (120)
Q Consensus 29 Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~--~~C~~C~~~i~ 73 (120)
-+.|..|...+.. .....=+..||..|..+.+. ..|..|..+|.
T Consensus 15 ~~~C~IC~~~~~~-~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 15 VPECAICLQTCVH-PVSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp CCBCSSSSSBCSS-EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCCccCCcccCC-CEEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 4567777776644 34455678888888776432 56777777764
No 116
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=77.05 E-value=2.6 Score=24.44 Aligned_cols=45 Identities=16% Similarity=0.442 Sum_probs=31.4
Q ss_pred cccccccccccCCCCeeecCCeeccHhHHHhHhC-----CCCCCCCCcccC
Q psy17880 29 CFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFG-----TKCAQCGEYVEG 74 (120)
Q Consensus 29 Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~-----~~C~~C~~~i~~ 74 (120)
-+.|..|...+.. .....=|..+|..|..+.+. ..|..|..++..
T Consensus 21 ~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKE-PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSS-CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcC-eEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 3578888777654 34456678899999877654 268888888753
No 117
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=76.99 E-value=3.8 Score=22.57 Aligned_cols=45 Identities=18% Similarity=0.465 Sum_probs=29.4
Q ss_pred ccccccccccCCC--Ceee-cCCeeccHhHHHhHh---CCCCCCCCCcccC
Q psy17880 30 FQCSVCKNSLAQG--GYFN-KDGAYYCTSDYQKKF---GTKCAQCGEYVEG 74 (120)
Q Consensus 30 f~C~~C~~~l~~~--~~~~-~~~~~~C~~c~~~~~---~~~C~~C~~~i~~ 74 (120)
+.|..|-.++... .+.. .=|..+|..|..+.. ...|..|.+++..
T Consensus 12 ~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred CcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 5677777777432 2221 257889999998765 3467777777743
No 118
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=76.95 E-value=2.7 Score=24.40 Aligned_cols=44 Identities=14% Similarity=0.318 Sum_probs=31.2
Q ss_pred cccccccccccCCCCeee-cCCeeccHhHHHhHhC--CCCCCCCCccc
Q psy17880 29 CFQCSVCKNSLAQGGYFN-KDGAYYCTSDYQKKFG--TKCAQCGEYVE 73 (120)
Q Consensus 29 Cf~C~~C~~~l~~~~~~~-~~~~~~C~~c~~~~~~--~~C~~C~~~i~ 73 (120)
-+.|..|...+.. .... .=|..||..|..+.+. ..|..|..++.
T Consensus 15 ~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (108)
T 2ckl_A 15 HLMCVLCGGYFID-ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVH 61 (108)
T ss_dssp GTBCTTTSSBCSS-EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSC
T ss_pred cCCCccCChHHhC-cCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccc
Confidence 4678888777754 3444 6788899998877653 57888877774
No 119
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=75.78 E-value=3.4 Score=26.01 Aligned_cols=46 Identities=20% Similarity=0.423 Sum_probs=35.5
Q ss_pred ccccccccccccCCCCeeecCCeeccHhHHHhHhC---CCCCCCCCcccC
Q psy17880 28 TCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFG---TKCAQCGEYVEG 74 (120)
Q Consensus 28 ~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~---~~C~~C~~~i~~ 74 (120)
+=+.|..|...+.. .....-|..||..|..+.+. ..|..|..+|..
T Consensus 17 ~~~~C~IC~~~~~~-pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 17 SKYECPICLMALRE-AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GGGBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCChhhcC-cEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 44789999888865 35567889999999987652 489999988753
No 120
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=75.58 E-value=4.4 Score=23.33 Aligned_cols=47 Identities=4% Similarity=-0.099 Sum_probs=35.9
Q ss_pred cccccccccccccCCCCeeecCC-eeccHhHHHhHh--CCCCCCCCCcccC
Q psy17880 27 ITCFQCSVCKNSLAQGGYFNKDG-AYYCTSDYQKKF--GTKCAQCGEYVEG 74 (120)
Q Consensus 27 ~~Cf~C~~C~~~l~~~~~~~~~~-~~~C~~c~~~~~--~~~C~~C~~~i~~ 74 (120)
++-|.|..|...+.+ ......| ..||..|-.+.+ ...|..|++++..
T Consensus 20 p~~~~CpI~~~~m~d-PV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD-PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccC-CeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 567899999888865 5667777 999999887655 3578888887753
No 121
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=75.46 E-value=3.4 Score=23.07 Aligned_cols=44 Identities=18% Similarity=0.456 Sum_probs=32.8
Q ss_pred ccccccccccccCCCCeeec-CCeeccHhHHHhHhC----CCCCCCCCcc
Q psy17880 28 TCFQCSVCKNSLAQGGYFNK-DGAYYCTSDYQKKFG----TKCAQCGEYV 72 (120)
Q Consensus 28 ~Cf~C~~C~~~l~~~~~~~~-~~~~~C~~c~~~~~~----~~C~~C~~~i 72 (120)
+-+.|..|...+.. ..... =|..||..|..+.+. ..|..|..++
T Consensus 12 ~~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 12 DELLCLICKDIMTD-AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp TTTEETTTTEECSS-CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred cCCCCCCCChhhcC-ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 34788999888764 45555 489999999876642 5788888876
No 122
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=75.38 E-value=3.9 Score=23.97 Aligned_cols=45 Identities=18% Similarity=0.391 Sum_probs=33.9
Q ss_pred cccccccccccCCCCeeecCCeeccHhHHHhHh---CCCCCCCCCcccC
Q psy17880 29 CFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKF---GTKCAQCGEYVEG 74 (120)
Q Consensus 29 Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~---~~~C~~C~~~i~~ 74 (120)
=+.|..|...+.. .....-|..||..|..+.+ +..|..|..++..
T Consensus 23 ~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHILAD-PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCcHhcC-cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 4788889887754 3556778999999987654 4589999988853
No 123
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.10 E-value=1.8 Score=23.95 Aligned_cols=21 Identities=19% Similarity=0.575 Sum_probs=13.4
Q ss_pred eCcccccccc--------ccccCCCcCCC
Q psy17880 80 LGKTYHQKCF--------TCARCRFSKKR 100 (120)
Q Consensus 80 ~~~~~H~~Cf--------~C~~C~~~l~~ 100 (120)
-+..||.+|. .|-.|.+++..
T Consensus 48 C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 48 CNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp TSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 4667777776 37777666543
No 124
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=75.08 E-value=1.1 Score=27.44 Aligned_cols=39 Identities=26% Similarity=0.607 Sum_probs=31.8
Q ss_pred CCCCCCCCcccCcEEEEeCcccccccc--------ccccCCCcCCCC
Q psy17880 63 TKCAQCGEYVEGEVVTALGKTYHQKCF--------TCARCRFSKKRE 101 (120)
Q Consensus 63 ~~C~~C~~~i~~~~~~~~~~~~H~~Cf--------~C~~C~~~l~~~ 101 (120)
..|..|...+...++..-|+.||..|. .|..|.+++...
T Consensus 54 ~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 54 LQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp SBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred CCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 479999998877777778889999886 499999988654
No 125
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=74.70 E-value=2.2 Score=25.02 Aligned_cols=45 Identities=20% Similarity=0.374 Sum_probs=31.9
Q ss_pred ccccccccccccCCCCeeecCCeeccHhHHHhHhC---CCCCCCCCccc
Q psy17880 28 TCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFG---TKCAQCGEYVE 73 (120)
Q Consensus 28 ~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~---~~C~~C~~~i~ 73 (120)
+-+.|..|...+.. .....=|..||..|..+.+. ..|..|..++.
T Consensus 14 ~~~~C~iC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 14 SECQCGICMEILVE-PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHBCTTTCSBCSS-CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCccCCcccCc-eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 34778888877754 45556788899999876542 47888887763
No 126
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.97 E-value=0.52 Score=25.12 Aligned_cols=28 Identities=18% Similarity=0.420 Sum_probs=15.5
Q ss_pred ccccccccccCCCCeeecCCeeccHhHHHh
Q psy17880 30 FQCSVCKNSLAQGGYFNKDGAYYCTSDYQK 59 (120)
Q Consensus 30 f~C~~C~~~l~~~~~~~~~~~~~C~~c~~~ 59 (120)
+.|..|...+.. ....=+..+|..|..+
T Consensus 16 ~~C~IC~~~~~~--~~~~CgH~fc~~Ci~~ 43 (70)
T 2ecn_A 16 EECCICMDGRAD--LILPCAHSFCQKCIDK 43 (70)
T ss_dssp CCCSSSCCSCCS--EEETTTEEECHHHHHH
T ss_pred CCCeeCCcCccC--cccCCCCcccHHHHHH
Confidence 455666555543 3444556666666654
No 127
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=73.92 E-value=1.1 Score=26.72 Aligned_cols=44 Identities=18% Similarity=0.400 Sum_probs=27.1
Q ss_pred cccccccccccCCCCeeecCCeeccHhHHHhHhC---CCCCCCCCccc
Q psy17880 29 CFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFG---TKCAQCGEYVE 73 (120)
Q Consensus 29 Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~---~~C~~C~~~i~ 73 (120)
-+.|..|...+.. .....=|..||..|....+. ..|..|..++.
T Consensus 52 ~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 98 (124)
T 3fl2_A 52 TFQCICCQELVFR-PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLG 98 (124)
T ss_dssp HTBCTTTSSBCSS-EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCcCChHHcC-cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCC
Confidence 3567777666653 34445677778777765542 26666766664
No 128
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=73.35 E-value=4.9 Score=23.08 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=16.2
Q ss_pred CeeccHhHHHhHh---CCCCCCCCCcc
Q psy17880 49 GAYYCTSDYQKKF---GTKCAQCGEYV 72 (120)
Q Consensus 49 ~~~~C~~c~~~~~---~~~C~~C~~~i 72 (120)
+-+.|..||+-.. ...|..|+.+.
T Consensus 42 ~FPvCrpCyEYErkeG~q~CpqCktrY 68 (93)
T 1weo_A 42 GFPACRPCYEYERREGTQNCPQCKTRY 68 (93)
T ss_dssp CCCCCHHHHHHHHHTSCSSCTTTCCCC
T ss_pred CChhhHHHHHHHHhccCccccccCCcc
Confidence 3467999986332 26788887765
No 129
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=73.20 E-value=1.1 Score=26.69 Aligned_cols=46 Identities=20% Similarity=0.423 Sum_probs=34.3
Q ss_pred ccccccccccccCCCCeeecCCeeccHhHHHhHhC---CCCCCCCCcccC
Q psy17880 28 TCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFG---TKCAQCGEYVEG 74 (120)
Q Consensus 28 ~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~---~~C~~C~~~i~~ 74 (120)
+-+.|..|...+.. .....=|..||..|..+.+. ..|..|..++..
T Consensus 17 ~~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 17 SKYECPICLMALRE-AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GGGBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCcCChhhcC-eEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 34788999888765 35566789999999876542 489999888854
No 130
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=72.87 E-value=3.8 Score=24.34 Aligned_cols=38 Identities=26% Similarity=0.641 Sum_probs=31.3
Q ss_pred CCCCCCCCcccCcEEEEeCcccccccc---------ccccCCCcCCC
Q psy17880 63 TKCAQCGEYVEGEVVTALGKTYHQKCF---------TCARCRFSKKR 100 (120)
Q Consensus 63 ~~C~~C~~~i~~~~~~~~~~~~H~~Cf---------~C~~C~~~l~~ 100 (120)
..|..|...+...++..-|+.|+..|. .|..|..++..
T Consensus 53 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 53 FQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp TBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 589999888877766677888988887 79999998865
No 131
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=72.68 E-value=1.5 Score=25.77 Aligned_cols=50 Identities=16% Similarity=0.245 Sum_probs=35.5
Q ss_pred CCCCCCCcccCc-EEEEeCcccccccc---------ccccCCCcCCCCceeeeCCeeeec
Q psy17880 64 KCAQCGEYVEGE-VVTALGKTYHQKCF---------TCARCRFSKKREIYNWLGGRAYEN 113 (120)
Q Consensus 64 ~C~~C~~~i~~~-~~~~~~~~~H~~Cf---------~C~~C~~~l~~~~~~~~~g~~yC~ 113 (120)
.|..|+.||... .|.--+..|..+|. .|..|+.++..-+....++...|.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~~~~~if~C~ 62 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQCTRGSLFMCS 62 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEEEEGGGCCCCC
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEEeccCCEEECC
Confidence 588999999642 44555567777777 488999998776666666665565
No 132
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=72.16 E-value=3.5 Score=25.86 Aligned_cols=45 Identities=13% Similarity=0.388 Sum_probs=33.2
Q ss_pred ccccccccccccCCCCeee-cCCeeccHhHHHhHhC---CCCCCCCCccc
Q psy17880 28 TCFQCSVCKNSLAQGGYFN-KDGAYYCTSDYQKKFG---TKCAQCGEYVE 73 (120)
Q Consensus 28 ~Cf~C~~C~~~l~~~~~~~-~~~~~~C~~c~~~~~~---~~C~~C~~~i~ 73 (120)
+-+.|..|...+.. .... .=|..||..|..+.+. ..|..|..+|.
T Consensus 53 ~~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLKN-TMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCSS-EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCcccChHhhC-cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 44688888887765 3343 6788999999877653 56999998874
No 133
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=71.77 E-value=2.2 Score=23.01 Aligned_cols=43 Identities=19% Similarity=0.369 Sum_probs=27.0
Q ss_pred cccccccccccCCCCeeecCCeeccHhHHHhHh---------CCCCCCCCCcc
Q psy17880 29 CFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKF---------GTKCAQCGEYV 72 (120)
Q Consensus 29 Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~---------~~~C~~C~~~i 72 (120)
=+.|..|...+.. .....=|..||..|..+.+ ...|..|..++
T Consensus 12 ~~~C~IC~~~~~~-p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~ 63 (79)
T 2egp_A 12 EVTCPICLELLTE-PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISY 63 (79)
T ss_dssp CCEETTTTEECSS-CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCC
T ss_pred CCCCcCCCcccCC-eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcC
Confidence 3678888777754 3344567888888886533 23455555555
No 134
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=70.12 E-value=3.7 Score=23.51 Aligned_cols=44 Identities=18% Similarity=0.513 Sum_probs=30.4
Q ss_pred cccccccccccCCCCee-ecCCeeccHhHHHhHhC---CCCCCCCCccc
Q psy17880 29 CFQCSVCKNSLAQGGYF-NKDGAYYCTSDYQKKFG---TKCAQCGEYVE 73 (120)
Q Consensus 29 Cf~C~~C~~~l~~~~~~-~~~~~~~C~~c~~~~~~---~~C~~C~~~i~ 73 (120)
=+.|..|...+.. ... ..=|..||..|..+.+. ..|..|..++.
T Consensus 22 ~~~C~IC~~~~~~-p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 22 VFRCFICMEKLRD-ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HTBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCccCCccccC-ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 3678888777754 344 55678889888876432 47888888774
No 135
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=69.49 E-value=1.8 Score=22.01 Aligned_cols=41 Identities=15% Similarity=0.309 Sum_probs=19.1
Q ss_pred ccccccccccCCCCeeecCCeeccHhHHHhHhCCCCCCCCCcc
Q psy17880 30 FQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTKCAQCGEYV 72 (120)
Q Consensus 30 f~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~C~~~i 72 (120)
+.|..|...+... ....=+..+|..|..+ ....|..|.+++
T Consensus 7 ~~C~IC~~~~~~p-~~l~CgH~fC~~Ci~~-~~~~CP~Cr~~~ 47 (56)
T 1bor_A 7 LRCQQCQAEAKCP-KLLPCLHTLCSGCLEA-SGMQCPICQAPW 47 (56)
T ss_dssp SSCSSSCSSCBCC-SCSTTSCCSBTTTCSS-SSSSCSSCCSSS
T ss_pred CCceEeCCccCCe-EEcCCCCcccHHHHcc-CCCCCCcCCcEe
Confidence 4455565544432 2233444555555433 234555555554
No 136
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.36 E-value=5.4 Score=21.80 Aligned_cols=45 Identities=18% Similarity=0.516 Sum_probs=31.0
Q ss_pred cccccccccccCCC---CeeecCCeeccHhHHHhHhC-----CCCCCCCCccc
Q psy17880 29 CFQCSVCKNSLAQG---GYFNKDGAYYCTSDYQKKFG-----TKCAQCGEYVE 73 (120)
Q Consensus 29 Cf~C~~C~~~l~~~---~~~~~~~~~~C~~c~~~~~~-----~~C~~C~~~i~ 73 (120)
-+.|..|...+... .....=|..+|..|..+.+. ..|..|.+++.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 15 VLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred CCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 36788887777653 23345678899999876543 46888887774
No 137
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=69.03 E-value=4.1 Score=23.91 Aligned_cols=72 Identities=21% Similarity=0.480 Sum_probs=42.8
Q ss_pred ccccccccccc-cceEEEC--CcccccccccccccccccCCCCeeecCCeeccHhHHHhHhCCCCCCCCCcccCc-EEE-
Q psy17880 4 AYCTSCKKKCS-GEVLRVQ--DKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTKCAQCGEYVEGE-VVT- 78 (120)
Q Consensus 4 ~~C~~C~~~i~-~~~~~~~--~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~~~C~~C~~~i~~~-~~~- 78 (120)
..|..|+..=. ++.|.-. ++.||..|+.=.. .+ ...+..+|.+| ..|..|++.-.+. +|.
T Consensus 8 ~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~--~~-------~~~~~W~C~~C------~~C~~C~~~~~~~~ll~C 72 (111)
T 2ysm_A 8 ANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAV--TP-------LKRAGWQCPEC------KVCQNCKQSGEDSKMLVC 72 (111)
T ss_dssp SCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCC--CT-------TTSTTCCCTTT------CCCTTTCCCSCCTTEEEC
T ss_pred CCCcCCCCCCCCcCCeECCCCCCCcChHHhCCcc--cc-------ccccCccCCcC------CcccccCccCCCCCeeEC
Confidence 46777776532 2234333 5789988865431 11 12456678776 4788888876443 333
Q ss_pred -EeCccccccccc
Q psy17880 79 -ALGKTYHQKCFT 90 (120)
Q Consensus 79 -~~~~~~H~~Cf~ 90 (120)
.-++.||..|..
T Consensus 73 d~C~~~yH~~Cl~ 85 (111)
T 2ysm_A 73 DTCDKGYHTFCLQ 85 (111)
T ss_dssp SSSCCEEEGGGSS
T ss_pred CCCCcHHhHHhcC
Confidence 345789988764
No 138
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=68.20 E-value=5.3 Score=24.81 Aligned_cols=43 Identities=21% Similarity=0.424 Sum_probs=24.3
Q ss_pred ccccccccccCCCCeeecCCeeccHhHHHhHhC---CCCCCCCCccc
Q psy17880 30 FQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFG---TKCAQCGEYVE 73 (120)
Q Consensus 30 f~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~---~~C~~C~~~i~ 73 (120)
+.|..|...+.. .....=|..||..|..+.+. ..|..|..++.
T Consensus 79 ~~C~IC~~~~~~-pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 124 (150)
T 1z6u_A 79 FMCVCCQELVYQ-PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLG 124 (150)
T ss_dssp TBCTTTSSBCSS-EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CEeecCChhhcC-CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCC
Confidence 566666665543 23345566677777655442 25666666653
No 139
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=67.43 E-value=7.6 Score=25.11 Aligned_cols=47 Identities=9% Similarity=0.068 Sum_probs=36.7
Q ss_pred cccccccccccccCCCCeeecCCeeccHhHHHhHh---CCCCCCCCCcccC
Q psy17880 27 ITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKF---GTKCAQCGEYVEG 74 (120)
Q Consensus 27 ~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~---~~~C~~C~~~i~~ 74 (120)
+.-|.|..|...+.+ ......|..||..|-.+.+ +..|..|+.++..
T Consensus 104 p~~f~CPI~~elm~D-PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCC-CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 677999999888865 5777899999998876543 3469999888853
No 140
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=67.32 E-value=5.7 Score=26.67 Aligned_cols=48 Identities=8% Similarity=0.061 Sum_probs=36.5
Q ss_pred ccccccccccccccCCCCeeecCCeeccHhHHHhHh---CCCCCCCCCcccC
Q psy17880 26 HITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKF---GTKCAQCGEYVEG 74 (120)
Q Consensus 26 H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~---~~~C~~C~~~i~~ 74 (120)
-+.-|.|..|...+.+ ......|..||..|-.+-+ +..|..|+.++..
T Consensus 205 ~~~~~~c~i~~~~~~d-Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 205 IPDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CCSTTBCTTTCSBCSS-EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CCcccCCcCcCCHhcC-CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 4567899999888865 5667789999999876543 3459999988853
No 141
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.17 E-value=5.8 Score=21.33 Aligned_cols=42 Identities=19% Similarity=0.329 Sum_probs=28.3
Q ss_pred ccccccccccCCCCeeecCCee-ccHhHHHhHhCCCCCCCCCcccC
Q psy17880 30 FQCSVCKNSLAQGGYFNKDGAY-YCTSDYQKKFGTKCAQCGEYVEG 74 (120)
Q Consensus 30 f~C~~C~~~l~~~~~~~~~~~~-~C~~c~~~~~~~~C~~C~~~i~~ 74 (120)
+.|..|...+.. ..+..=|.. +|..|..+. ..|..|..+|..
T Consensus 26 ~~C~IC~~~~~~-~~~~pCgH~~~C~~C~~~~--~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 26 KLCKICMDRNIA-IVFVPCGHLVTCKQCAEAV--DKCPMCYTVITF 68 (75)
T ss_dssp HSCSSSCSSCCC-BCCSSSCCCCBCHHHHHHC--SBCTTTCCBCCC
T ss_pred CCCCcCCCCCCC-EEEecCCCHHHHHHHhhCC--CCCccCCceecC
Confidence 467777665543 334455667 899998643 788888888854
No 142
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=66.50 E-value=2 Score=26.83 Aligned_cols=39 Identities=26% Similarity=0.520 Sum_probs=32.4
Q ss_pred CCCCCCCCcccCcEEEEeCcccccccc---------ccccCCCcCCCC
Q psy17880 63 TKCAQCGEYVEGEVVTALGKTYHQKCF---------TCARCRFSKKRE 101 (120)
Q Consensus 63 ~~C~~C~~~i~~~~~~~~~~~~H~~Cf---------~C~~C~~~l~~~ 101 (120)
..|..|...+...++..-|..|+..|. .|..|..++...
T Consensus 79 ~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 79 FMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp TBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 589999998887777777888998885 799999988765
No 143
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=65.94 E-value=6.1 Score=21.23 Aligned_cols=42 Identities=19% Similarity=0.329 Sum_probs=24.9
Q ss_pred ccccccccccCCCCeeecCCee-ccHhHHHhHhCCCCCCCCCcccC
Q psy17880 30 FQCSVCKNSLAQGGYFNKDGAY-YCTSDYQKKFGTKCAQCGEYVEG 74 (120)
Q Consensus 30 f~C~~C~~~l~~~~~~~~~~~~-~C~~c~~~~~~~~C~~C~~~i~~ 74 (120)
+.|..|...+.. ..+..=|.. +|..|..+. ..|..|..+|..
T Consensus 25 ~~C~iC~~~~~~-~~~~pCgH~~~C~~C~~~~--~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 25 KLCKICMDRNIA-IVFVPCGHLVTCKQCAEAV--DKCPMCYTVITF 67 (74)
T ss_dssp TBCTTTSSSBCC-EEEETTCCBCCCHHHHTTC--SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCC-EEEcCCCChhHHHHhhhcC--ccCCCcCcCccC
Confidence 456666555433 233445666 777776654 677777777653
No 144
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.86 E-value=8.9 Score=19.00 Aligned_cols=30 Identities=23% Similarity=0.442 Sum_probs=20.8
Q ss_pred ccccccccccCCCCeeecCCeeccHhHHHhH
Q psy17880 30 FQCSVCKNSLAQGGYFNKDGAYYCTSDYQKK 60 (120)
Q Consensus 30 f~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~ 60 (120)
+.|..|...+... ....=+..||..|..+.
T Consensus 16 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~ 45 (58)
T 2ecj_A 16 ASCSVCLEYLKEP-VIIECGHNFCKACITRW 45 (58)
T ss_dssp CBCSSSCCBCSSC-CCCSSCCCCCHHHHHHH
T ss_pred CCCccCCcccCcc-EeCCCCCccCHHHHHHH
Confidence 5677787777553 34556778888888766
No 145
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.67 E-value=1.7 Score=23.45 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=19.5
Q ss_pred ccccccccccCCCC--eeecCCeeccHhHHHhHh--CCCCCCCCCcc
Q psy17880 30 FQCSVCKNSLAQGG--YFNKDGAYYCTSDYQKKF--GTKCAQCGEYV 72 (120)
Q Consensus 30 f~C~~C~~~l~~~~--~~~~~~~~~C~~c~~~~~--~~~C~~C~~~i 72 (120)
..|..|...+.... ....=+..||..|..+.+ ...|..|..+|
T Consensus 24 ~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~ 70 (75)
T 1x4j_A 24 TLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADS 70 (75)
T ss_dssp CEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCC
T ss_pred CCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcC
Confidence 45555555544321 112234555555554322 24455555444
No 146
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.46 E-value=12 Score=19.65 Aligned_cols=44 Identities=16% Similarity=0.204 Sum_probs=25.1
Q ss_pred ccccccccccCCCCee--ecCCeeccHhHHHhHh--CCCCCCCCCccc
Q psy17880 30 FQCSVCKNSLAQGGYF--NKDGAYYCTSDYQKKF--GTKCAQCGEYVE 73 (120)
Q Consensus 30 f~C~~C~~~l~~~~~~--~~~~~~~C~~c~~~~~--~~~C~~C~~~i~ 73 (120)
..|..|...+...... ..=+..||..|..+.+ ...|..|..+|.
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVL 63 (74)
T ss_dssp CBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCS
T ss_pred CCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccc
Confidence 4566666665443211 2456677777776532 356777777663
No 147
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=61.74 E-value=7.8 Score=20.71 Aligned_cols=44 Identities=20% Similarity=0.378 Sum_probs=20.3
Q ss_pred ccccccccccCCCC--eeecCCeeccHhHHHhHhC--CCCCCCCCccc
Q psy17880 30 FQCSVCKNSLAQGG--YFNKDGAYYCTSDYQKKFG--TKCAQCGEYVE 73 (120)
Q Consensus 30 f~C~~C~~~l~~~~--~~~~~~~~~C~~c~~~~~~--~~C~~C~~~i~ 73 (120)
+.|..|...+.... ....=+..||..|..+.+. ..|..|..+|.
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 63 (78)
T 2ect_A 16 LECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLT 63 (78)
T ss_dssp CCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCC
T ss_pred CCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccC
Confidence 45555555543321 1123445555555544322 34555555553
No 148
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=61.58 E-value=9.6 Score=18.70 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=11.5
Q ss_pred CeeccHhHHHhHh--CCCCCCCCCcc
Q psy17880 49 GAYYCTSDYQKKF--GTKCAQCGEYV 72 (120)
Q Consensus 49 ~~~~C~~c~~~~~--~~~C~~C~~~i 72 (120)
+..||..|..+.+ ...|..|..+|
T Consensus 28 ~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 28 GHGFHAECVDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp CCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred CCcccHHHHHHHHHcCCcCcCCCCEe
Confidence 4455555554322 24555555544
No 149
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.91 E-value=8.3 Score=19.66 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=22.7
Q ss_pred cccccccccccCCCCeeecCCeeccHhHHHhHh
Q psy17880 29 CFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKF 61 (120)
Q Consensus 29 Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~ 61 (120)
-+.|..|...+.. .....=|..||..|..+.+
T Consensus 20 ~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~ 51 (63)
T 2ysj_A 20 EVICPICLDILQK-PVTIDCGHNFCLKCITQIG 51 (63)
T ss_dssp CCBCTTTCSBCSS-CEECTTSSEECHHHHHHHH
T ss_pred CCCCCcCCchhCC-eEEeCCCCcchHHHHHHHH
Confidence 4678888777764 3445677888888887655
No 150
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=59.23 E-value=4.6 Score=19.92 Aligned_cols=18 Identities=6% Similarity=0.270 Sum_probs=15.1
Q ss_pred eeecCCeeccHhHHHhHh
Q psy17880 44 YFNKDGAYYCTSDYQKKF 61 (120)
Q Consensus 44 ~~~~~~~~~C~~c~~~~~ 61 (120)
|...+.+++|.+|++++.
T Consensus 22 ~mSVnTQP~CHEC~errq 39 (49)
T 2eqg_A 22 FMSVNTQPLCHECSERRQ 39 (49)
T ss_dssp BCCTTTTTSCHHHHHHHH
T ss_pred EEEecCccchHHHHHHHh
Confidence 457888999999999765
No 151
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=57.64 E-value=15 Score=18.96 Aligned_cols=44 Identities=18% Similarity=0.335 Sum_probs=23.8
Q ss_pred ccccccccccCCC-C-eeecCCeeccHhHHHhHh--CCCCCCCCCccc
Q psy17880 30 FQCSVCKNSLAQG-G-YFNKDGAYYCTSDYQKKF--GTKCAQCGEYVE 73 (120)
Q Consensus 30 f~C~~C~~~l~~~-~-~~~~~~~~~C~~c~~~~~--~~~C~~C~~~i~ 73 (120)
..|..|...+... . ....=+..+|..|..+.+ ...|..|..+|.
T Consensus 15 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 15 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIE 62 (69)
T ss_dssp CSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSC
T ss_pred CCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCcccc
Confidence 4566665555432 1 223345667777765432 356777766663
No 152
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.79 E-value=10 Score=20.02 Aligned_cols=38 Identities=18% Similarity=0.384 Sum_probs=24.8
Q ss_pred CCcccccccccccccccc-cCCCCee--ecCCeeccHhHHHhH
Q psy17880 21 QDKYFHITCFQCSVCKNS-LAQGGYF--NKDGAYYCTSDYQKK 60 (120)
Q Consensus 21 ~~~~~H~~Cf~C~~C~~~-l~~~~~~--~~~~~~~C~~c~~~~ 60 (120)
....+|+ ..|..|++. |.+..|. .=.+--+|..||...
T Consensus 5 ~~~v~H~--~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g 45 (63)
T 2e5r_A 5 SSGVFHP--VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRG 45 (63)
T ss_dssp SSSCCSC--SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHC
T ss_pred cCCceeC--CCCcCCCCcceecceEEecCCCCchhHHHHHhCC
Confidence 3456777 889999874 7654333 223455899999863
No 153
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=55.77 E-value=12 Score=19.42 Aligned_cols=43 Identities=28% Similarity=0.796 Sum_probs=24.8
Q ss_pred cccccccccccceEEECC-----cccccccccccccccccCCCCeeecCCeeccHhHHHh
Q psy17880 5 YCTSCKKKCSGEVLRVQD-----KYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQK 59 (120)
Q Consensus 5 ~C~~C~~~i~~~~~~~~~-----~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~ 59 (120)
.| .|+++-.+..|.-.+ ..||..|.. |... ..++.+|..|..+
T Consensus 12 ~C-~C~~~~~g~mi~CD~cdC~~~wfH~~Cvg-------l~~~----p~g~w~C~~C~~~ 59 (60)
T 2vnf_A 12 YC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG-------LTTK----PRGKWFCPRCSQE 59 (60)
T ss_dssp ET-TTTEECCSEEEECSCTTCSSCEEETGGGT-------CSSC----CSSCCCCHHHHC-
T ss_pred EE-ECCCcCCCCEEEeCCCCCCCceEehhcCC-------CCcC----CCCCEECcCccCc
Confidence 45 577765565555444 458888765 2211 1357788887543
No 154
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=55.42 E-value=2.1 Score=28.22 Aligned_cols=29 Identities=14% Similarity=0.050 Sum_probs=24.5
Q ss_pred cccccCCCcCCCCceeeeCCeeeeccCCC
Q psy17880 89 FTCARCRFSKKREIYNWLGGRAYENRLGG 117 (120)
Q Consensus 89 f~C~~C~~~l~~~~~~~~~g~~yC~~~~~ 117 (120)
..|..|+..+....-...||+.+|..|+.
T Consensus 173 ~~C~~CGE~~~~~~~~~~~g~~~C~~C~~ 201 (204)
T 2gvi_A 173 VRCDVCGEYTYEADAKLLNGKPVCKPDYY 201 (204)
T ss_dssp EECTTTCCEEEGGGCEEETTEEECHHHHH
T ss_pred eECCCCCCchhhcceeeeCCcEEChhhhc
Confidence 56999999988777788899999998764
No 155
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=55.34 E-value=9.9 Score=19.73 Aligned_cols=42 Identities=29% Similarity=0.833 Sum_probs=25.0
Q ss_pred cccccccccccceEEECC-----cccccccccccccccccCCCCeeecCCeeccHhHHH
Q psy17880 5 YCTSCKKKCSGEVLRVQD-----KYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQ 58 (120)
Q Consensus 5 ~C~~C~~~i~~~~~~~~~-----~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~ 58 (120)
.| .|+++-.|..|.-.+ ..||..|.. |... ..++.||..|..
T Consensus 11 yC-~C~~~~~g~mi~CD~~~C~~~wfH~~Cvg-------l~~~----p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 11 YC-LCHQVSYGEMIGCDNPDCPIEWFHFACVD-------LTTK----PKGKWFCPRCVQ 57 (59)
T ss_dssp ET-TTTEECCSEEEECSCTTCSSCEEETGGGT-------CSSC----CSSCCCCHHHHC
T ss_pred EE-ECCCCCCCCeeEeeCCCCCCCCEecccCC-------cccC----CCCCEECcCccC
Confidence 45 677766665555444 467887765 2211 125678888754
No 156
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.46 E-value=3.6 Score=22.61 Aligned_cols=9 Identities=33% Similarity=0.722 Sum_probs=5.3
Q ss_pred Ccccccccc
Q psy17880 81 GKTYHQKCF 89 (120)
Q Consensus 81 ~~~~H~~Cf 89 (120)
+..||..|+
T Consensus 35 ~h~fH~~Ci 43 (74)
T 2ct0_A 35 GIRMHLPCV 43 (74)
T ss_dssp CCEECHHHH
T ss_pred CchhhHHHH
Confidence 445666665
No 157
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=53.45 E-value=2.4 Score=26.22 Aligned_cols=44 Identities=25% Similarity=0.546 Sum_probs=33.4
Q ss_pred ccccccccccccCCCCeeecCCeeccHhHHHhHhC---CCCCCCCCcc
Q psy17880 28 TCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFG---TKCAQCGEYV 72 (120)
Q Consensus 28 ~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~---~~C~~C~~~i 72 (120)
+-+.|..|...+.. .....=|..||..|..+... ..|..|..+|
T Consensus 30 ~~~~C~IC~~~~~~-pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 30 AKYLCSACRNVLRR-PFQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GGGBCTTTCSBCSS-EEECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCcCCCCCChhhcC-cEECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 45789999888865 35567789999999987653 4788887765
No 158
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.16 E-value=16 Score=20.51 Aligned_cols=45 Identities=20% Similarity=0.424 Sum_probs=32.3
Q ss_pred ccccccccccccCCCCeee-cCCeeccHhHHHhHhC--------CCCCC--CCCc-cc
Q psy17880 28 TCFQCSVCKNSLAQGGYFN-KDGAYYCTSDYQKKFG--------TKCAQ--CGEY-VE 73 (120)
Q Consensus 28 ~Cf~C~~C~~~l~~~~~~~-~~~~~~C~~c~~~~~~--------~~C~~--C~~~-i~ 73 (120)
.-|.|..|...+.+ .... ..|..||..|-.+.+. ..|.. |.+. +.
T Consensus 6 ~~~~CPI~~~~~~d-PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~ 62 (94)
T 2yu4_A 6 SGFTCPITKEEMKK-PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR 62 (94)
T ss_dssp SCCBCTTTCSBCSS-EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC
T ss_pred cEeECcCcCchhcC-CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC
Confidence 44789999888865 5666 5899999988765442 47888 7655 53
No 159
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=50.72 E-value=4.9 Score=23.65 Aligned_cols=12 Identities=25% Similarity=0.753 Sum_probs=9.5
Q ss_pred Cccccccccccc
Q psy17880 3 KAYCTSCKKKCS 14 (120)
Q Consensus 3 ~~~C~~C~~~i~ 14 (120)
...|..|++.|.
T Consensus 25 Ra~Ck~C~~kI~ 36 (106)
T 2dmj_A 25 RASCKKCSESIP 36 (106)
T ss_dssp CCBCSSSCCBCC
T ss_pred CCcchhhCCccC
Confidence 357999999985
No 160
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=49.54 E-value=24 Score=19.51 Aligned_cols=44 Identities=14% Similarity=0.283 Sum_probs=23.8
Q ss_pred ccccccccccCCCC--eeecCCeeccHhHHHhHhC--CCCCCCCCccc
Q psy17880 30 FQCSVCKNSLAQGG--YFNKDGAYYCTSDYQKKFG--TKCAQCGEYVE 73 (120)
Q Consensus 30 f~C~~C~~~l~~~~--~~~~~~~~~C~~c~~~~~~--~~C~~C~~~i~ 73 (120)
..|..|...+.... ....=+..||..|..+.+. ..|..|..+|.
T Consensus 41 ~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 41 MCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 45666765554332 1233466677777655332 45666665553
No 161
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=49.02 E-value=14 Score=19.81 Aligned_cols=10 Identities=30% Similarity=0.903 Sum_probs=5.7
Q ss_pred CCCCCCCCcc
Q psy17880 63 TKCAQCGEYV 72 (120)
Q Consensus 63 ~~C~~C~~~i 72 (120)
.+|..|++.+
T Consensus 16 ~rC~~C~kkv 25 (64)
T 1wfh_A 16 NRCTVCRKRV 25 (64)
T ss_dssp CCCTTTCCCC
T ss_pred CcChhhCCcc
Confidence 4566666554
No 162
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=48.85 E-value=5.4 Score=23.87 Aligned_cols=13 Identities=23% Similarity=0.687 Sum_probs=9.9
Q ss_pred Ccccccccccccc
Q psy17880 3 KAYCTSCKKKCSG 15 (120)
Q Consensus 3 ~~~C~~C~~~i~~ 15 (120)
...|..|++.|..
T Consensus 20 RA~Ck~Ck~kI~K 32 (114)
T 1v9x_A 20 RSSCKTCKSVINK 32 (114)
T ss_dssp CCBCSSSCCBCCS
T ss_pred CCCchhhCCccCC
Confidence 3579999999853
No 163
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=48.15 E-value=12 Score=19.78 Aligned_cols=13 Identities=31% Similarity=0.703 Sum_probs=8.0
Q ss_pred ccccCCCcCCCCc
Q psy17880 90 TCARCRFSKKREI 102 (120)
Q Consensus 90 ~C~~C~~~l~~~~ 102 (120)
.|+.|+++|..+.
T Consensus 22 ~C~~CKk~lqKGQ 34 (62)
T 2das_A 22 TCANCKKPLQKGQ 34 (62)
T ss_dssp BCTTTCCBCCTTS
T ss_pred ChhhccchhhcCc
Confidence 4666777775553
No 164
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=47.75 E-value=15 Score=19.21 Aligned_cols=42 Identities=26% Similarity=0.768 Sum_probs=25.1
Q ss_pred cccccccccccceEEECC-----cccccccccccccccccCCCCeeecCCeeccHhHHH
Q psy17880 5 YCTSCKKKCSGEVLRVQD-----KYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQ 58 (120)
Q Consensus 5 ~C~~C~~~i~~~~~~~~~-----~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~ 58 (120)
.| .|+++-.+..|.-.+ ..||..|..= ... ..++.||..|..
T Consensus 13 yC-~C~~~~~g~MI~CD~c~C~~~WfH~~Cvgl-------~~~----p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 13 YC-LCNQVSYGEMIGCDNEQCPIEWFHFSCVSL-------TYK----PKGKWYCPKCRG 59 (62)
T ss_dssp ET-TTTEECCSEEEECSCTTCSSCEEETGGGTC-------SSC----CSSCCCCHHHHT
T ss_pred EE-ECCCCCCCCeeeeeCCCCCcccEecccCCc-------CcC----CCCCEECcCccc
Confidence 45 677765565554444 5678877652 111 136778888854
No 165
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=47.36 E-value=14 Score=19.72 Aligned_cols=10 Identities=30% Similarity=0.899 Sum_probs=6.0
Q ss_pred CCCCCCCCcc
Q psy17880 63 TKCAQCGEYV 72 (120)
Q Consensus 63 ~~C~~C~~~i 72 (120)
.+|..|++.+
T Consensus 16 ~rC~~C~kkv 25 (64)
T 1wg2_A 16 NRCFSCNKKV 25 (64)
T ss_dssp CSCTTTCCCC
T ss_pred CcChhhCCcc
Confidence 4666666654
No 166
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=46.65 E-value=6.6 Score=21.18 Aligned_cols=30 Identities=20% Similarity=0.534 Sum_probs=18.8
Q ss_pred cccccccccCCCCeeecCCeeccHhHHHhHh
Q psy17880 31 QCSVCKNSLAQGGYFNKDGAYYCTSDYQKKF 61 (120)
Q Consensus 31 ~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~ 61 (120)
.|..|+.-- ......=++.+||..||.+..
T Consensus 10 WC~ICneDA-tlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 10 WCCICNEDA-TLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp SCTTTCSCC-CEEETTTTSEEECSSHHHHHT
T ss_pred eeEEeCCCC-eEEecCCCCceehHHHHHHHc
Confidence 345554431 123445567899999998865
No 167
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=45.10 E-value=10 Score=25.60 Aligned_cols=39 Identities=21% Similarity=0.413 Sum_probs=26.2
Q ss_pred CCCCCCCCcccCcEEE-EeCcccccccc----------ccccCCCcCCCC
Q psy17880 63 TKCAQCGEYVEGEVVT-ALGKTYHQKCF----------TCARCRFSKKRE 101 (120)
Q Consensus 63 ~~C~~C~~~i~~~~~~-~~~~~~H~~Cf----------~C~~C~~~l~~~ 101 (120)
+.|..|...|.....= .-+..||..|+ .|..|+.+.+.+
T Consensus 181 ~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 181 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 6799998888532211 14677898888 688887766543
No 168
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=45.04 E-value=7.6 Score=23.34 Aligned_cols=12 Identities=25% Similarity=0.753 Sum_probs=8.8
Q ss_pred Cccccccccccc
Q psy17880 3 KAYCTSCKKKCS 14 (120)
Q Consensus 3 ~~~C~~C~~~i~ 14 (120)
...|..|++.|.
T Consensus 38 RA~Ck~C~~kI~ 49 (116)
T 3od8_A 38 RASCKKCSESIP 49 (116)
T ss_dssp CCBCTTTCCBCC
T ss_pred CccCcccCCccC
Confidence 356888888885
No 169
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=44.56 E-value=5.9 Score=23.59 Aligned_cols=12 Identities=25% Similarity=0.764 Sum_probs=9.6
Q ss_pred Cccccccccccc
Q psy17880 3 KAYCTSCKKKCS 14 (120)
Q Consensus 3 ~~~C~~C~~~i~ 14 (120)
...|..|++.|.
T Consensus 19 Ra~Ck~C~~kI~ 30 (111)
T 3odc_A 19 RSTCKGCMEKIE 30 (111)
T ss_dssp CCBCTTTCCBCC
T ss_pred CccccccCCCcc
Confidence 457999999985
No 170
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=44.15 E-value=9 Score=21.58 Aligned_cols=29 Identities=28% Similarity=0.646 Sum_probs=14.9
Q ss_pred cccccccccccc-eEEECCccccccccccc
Q psy17880 5 YCTSCKKKCSGE-VLRVQDKYFHITCFQCS 33 (120)
Q Consensus 5 ~C~~C~~~i~~~-~~~~~~~~~H~~Cf~C~ 33 (120)
.|.-|.+.+++. .|......-|.-||.|+
T Consensus 17 ~CtlC~erLEdtHFVQCPsv~~HkFCFpCs 46 (93)
T 2cs3_A 17 CCTICHERLEDTHFVQCPSVPSHKFCFPCS 46 (93)
T ss_dssp CCSSSCSCCSSTTSEECSSCSSCEECHHHH
T ss_pred EeecchhhhccCceeeCCCccCCeeecccc
Confidence 355555555433 44444555555555554
No 171
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=44.05 E-value=33 Score=17.63 Aligned_cols=44 Identities=9% Similarity=0.072 Sum_probs=32.1
Q ss_pred ccccccccccCCCCeee-cCCeeccHhHHHhHhC--CCCCCCCCcccC
Q psy17880 30 FQCSVCKNSLAQGGYFN-KDGAYYCTSDYQKKFG--TKCAQCGEYVEG 74 (120)
Q Consensus 30 f~C~~C~~~l~~~~~~~-~~~~~~C~~c~~~~~~--~~C~~C~~~i~~ 74 (120)
|.|..+...+.+ .... .+|..|+..+-.+.+. .+|...++++..
T Consensus 4 ~~CpIs~~~m~d-PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPRR-PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCSS-EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred EEecCCCCCCCC-CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 678888887765 4666 7899999888766442 568888888753
No 172
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=43.75 E-value=24 Score=18.98 Aligned_cols=48 Identities=21% Similarity=0.427 Sum_probs=29.3
Q ss_pred cccccccccc---ccceEEEC--CcccccccccccccccccCCCCeeecCCeeccHhHHHhHhC
Q psy17880 4 AYCTSCKKKC---SGEVLRVQ--DKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFG 62 (120)
Q Consensus 4 ~~C~~C~~~i---~~~~~~~~--~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~~ 62 (120)
..|..|+..- .+++|.-. +..||..|+.=.. .-++.-||..|..++..
T Consensus 17 ~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~-----------vP~g~W~C~~C~~~~~~ 69 (71)
T 2ku3_A 17 AVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY-----------IPEGQWLCRHCLQSRAR 69 (71)
T ss_dssp CSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSS-----------CCSSCCCCHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCc-----------CCCCCcCCccCcCcCcc
Confidence 4688888753 23444443 4578887754321 22467889999876643
No 173
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=43.26 E-value=18 Score=19.92 Aligned_cols=10 Identities=40% Similarity=1.002 Sum_probs=6.0
Q ss_pred CCCCCCCCcc
Q psy17880 63 TKCAQCGEYV 72 (120)
Q Consensus 63 ~~C~~C~~~i 72 (120)
.+|..|++.+
T Consensus 26 ~RC~~C~kkv 35 (74)
T 1wfp_A 26 TRCLSCNKKV 35 (74)
T ss_dssp CBCSSSCCBC
T ss_pred ccchhhcCcc
Confidence 4666666554
No 174
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=43.26 E-value=8.5 Score=20.94 Aligned_cols=9 Identities=33% Similarity=0.936 Sum_probs=4.8
Q ss_pred CCCCCCCcc
Q psy17880 64 KCAQCGEYV 72 (120)
Q Consensus 64 ~C~~C~~~i 72 (120)
+|..|+..+
T Consensus 30 ~C~~CG~~~ 38 (70)
T 1twf_L 30 ICAECSSKL 38 (70)
T ss_dssp ECSSSCCEE
T ss_pred ECCCCCCcc
Confidence 455555553
No 175
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=42.91 E-value=5.9 Score=19.37 Aligned_cols=11 Identities=27% Similarity=0.679 Sum_probs=7.8
Q ss_pred ccccccccccc
Q psy17880 4 AYCTSCKKKCS 14 (120)
Q Consensus 4 ~~C~~C~~~i~ 14 (120)
.+|.+|++||.
T Consensus 18 RvC~~CgkPi~ 28 (44)
T 2lo3_A 18 RVCEKCGKPLA 28 (44)
T ss_dssp EECTTTCCEEE
T ss_pred hhhcccCCcch
Confidence 35778888774
No 176
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=41.21 E-value=37 Score=17.37 Aligned_cols=28 Identities=18% Similarity=0.425 Sum_probs=20.5
Q ss_pred cCCee-ccHhHHHhHh--CCCCCCCCCcccC
Q psy17880 47 KDGAY-YCTSDYQKKF--GTKCAQCGEYVEG 74 (120)
Q Consensus 47 ~~~~~-~C~~c~~~~~--~~~C~~C~~~i~~ 74 (120)
.=|.. +|..|..+.. +..|..|.++|..
T Consensus 26 pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 26 RTGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp TEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred CCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 34555 7899887654 3589999999964
No 177
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=41.19 E-value=11 Score=20.01 Aligned_cols=26 Identities=23% Similarity=0.676 Sum_probs=17.2
Q ss_pred ccccccccccccc--eEEEC---Cccccccc
Q psy17880 4 AYCTSCKKKCSGE--VLRVQ---DKYFHITC 29 (120)
Q Consensus 4 ~~C~~C~~~i~~~--~~~~~---~~~~H~~C 29 (120)
..|..|++++.+. .|.-. .+.||..|
T Consensus 9 ~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~C 39 (65)
T 2vpb_A 9 YPCGICTNEVNDDQDAILCEASCQKWFHRIC 39 (65)
T ss_dssp CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHH
T ss_pred CcCccCCCccCCCCCeEecccCccccCchhc
Confidence 4689999998543 44444 45577666
No 178
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=40.48 E-value=13 Score=14.37 Aligned_cols=12 Identities=25% Similarity=0.592 Sum_probs=8.7
Q ss_pred cccccCCCcCCC
Q psy17880 89 FTCARCRFSKKR 100 (120)
Q Consensus 89 f~C~~C~~~l~~ 100 (120)
|.|..|++.+..
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 567888887754
No 179
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=40.39 E-value=13 Score=14.87 Aligned_cols=13 Identities=23% Similarity=0.695 Sum_probs=9.5
Q ss_pred cccccCCCcCCCC
Q psy17880 89 FTCARCRFSKKRE 101 (120)
Q Consensus 89 f~C~~C~~~l~~~ 101 (120)
|.|..|++.+...
T Consensus 3 ~~C~~C~k~f~~~ 15 (30)
T 1paa_A 3 YACGLCNRAFTRR 15 (30)
T ss_dssp SBCTTTCCBCSSS
T ss_pred cCCcccCcccCCh
Confidence 6788888877654
No 180
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=39.87 E-value=14 Score=21.58 Aligned_cols=19 Identities=16% Similarity=0.385 Sum_probs=12.1
Q ss_pred eCcccccccc--------ccccCCCcC
Q psy17880 80 LGKTYHQKCF--------TCARCRFSK 98 (120)
Q Consensus 80 ~~~~~H~~Cf--------~C~~C~~~l 98 (120)
-+..||..|. .|-.|.+.+
T Consensus 73 C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 73 CNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp TSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred cCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 4667777776 366666654
No 181
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=38.35 E-value=14 Score=14.47 Aligned_cols=13 Identities=31% Similarity=0.728 Sum_probs=9.3
Q ss_pred cccccCCCcCCCC
Q psy17880 89 FTCARCRFSKKRE 101 (120)
Q Consensus 89 f~C~~C~~~l~~~ 101 (120)
|.|..|++.+...
T Consensus 3 ~~C~~C~~~f~~~ 15 (29)
T 1ard_A 3 FVCEVCTRAFARQ 15 (29)
T ss_dssp CBCTTTCCBCSSH
T ss_pred eECCCCCcccCCH
Confidence 6788888877543
No 182
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=38.33 E-value=6.7 Score=25.80 Aligned_cols=69 Identities=16% Similarity=0.222 Sum_probs=38.1
Q ss_pred ccccccccccCCCCeee----cCC----eeccHhHHHh-------------Hh---C-----CCCCCCCCcccC-----c
Q psy17880 30 FQCSVCKNSLAQGGYFN----KDG----AYYCTSDYQK-------------KF---G-----TKCAQCGEYVEG-----E 75 (120)
Q Consensus 30 f~C~~C~~~l~~~~~~~----~~~----~~~C~~c~~~-------------~~---~-----~~C~~C~~~i~~-----~ 75 (120)
-.|..|+...+.+.|.. .|| +.+|++|... ++ + .+|+.|++++.. .
T Consensus 76 K~C~~Cg~~Kp~seF~rnkt~~DG~~~l~s~CkeC~~~lr~YGIT~eey~~L~e~Qg~~~~~G~C~ICg~~~~~~~~k~l 155 (200)
T 3gox_A 76 KICNICHILKNTDGFEINQTDAKGRKTTRPSCRECRKNIDGVKLSSTEKKKMDEIAPPKGSVFTCPICEKRSIVGVTANL 155 (200)
T ss_dssp EECTTTCBEEEGGGSCEEEECTTSCEEECSSCHHHHHHHHCSCCCHHHHHHHHTTCCCTTCEEECTTTCCEEEBTTTBCE
T ss_pred eECCCCCCCcchhhhcccccCCCCCcccCccChhhhhccCCcCCCHHHHHHHHHHcccCCCCCcCcCCCCCCCcCcccce
Confidence 45667766555444442 245 6688888641 11 1 359999888752 2
Q ss_pred EEEEeCccccccccccccCCCcC
Q psy17880 76 VVTALGKTYHQKCFTCARCRFSK 98 (120)
Q Consensus 76 ~~~~~~~~~H~~Cf~C~~C~~~l 98 (120)
+|...-.+=+..-.-|..|+..|
T Consensus 156 vVDHDH~TG~VRGlLC~~CN~~L 178 (200)
T 3gox_A 156 VHDHNHDTGWGREWICDSCNTGL 178 (200)
T ss_dssp EEEECTTTCCEEEEEEHHHHHHH
T ss_pred eeecccCCCcEecccchhhcchh
Confidence 34433333334445577776654
No 183
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=38.01 E-value=16 Score=14.22 Aligned_cols=13 Identities=15% Similarity=0.450 Sum_probs=8.7
Q ss_pred cccccCCCcCCCC
Q psy17880 89 FTCARCRFSKKRE 101 (120)
Q Consensus 89 f~C~~C~~~l~~~ 101 (120)
|.|..|++.+...
T Consensus 3 ~~C~~C~~~f~~~ 15 (29)
T 2m0e_A 3 HKCPHCDKKFNQV 15 (29)
T ss_dssp CCCSSCCCCCCTT
T ss_pred CcCCCCCcccCCH
Confidence 5677787777543
No 184
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=36.79 E-value=16 Score=14.36 Aligned_cols=13 Identities=23% Similarity=0.843 Sum_probs=9.3
Q ss_pred cccccCCCcCCCC
Q psy17880 89 FTCARCRFSKKRE 101 (120)
Q Consensus 89 f~C~~C~~~l~~~ 101 (120)
|.|..|++.+...
T Consensus 3 ~~C~~C~k~f~~~ 15 (30)
T 1klr_A 3 YQCQYCEFRSADS 15 (30)
T ss_dssp CCCSSSSCCCSCS
T ss_pred ccCCCCCCccCCH
Confidence 5688888877654
No 185
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=36.62 E-value=11 Score=22.62 Aligned_cols=12 Identities=42% Similarity=0.756 Sum_probs=9.5
Q ss_pred Cccccccccccc
Q psy17880 3 KAYCTSCKKKCS 14 (120)
Q Consensus 3 ~~~C~~C~~~i~ 14 (120)
...|..|++.|.
T Consensus 15 RA~Ck~C~~kI~ 26 (117)
T 1uw0_A 15 TAGCKKCKEKIV 26 (117)
T ss_dssp CEECTTSSCEEC
T ss_pred CccchhhCcccC
Confidence 347999999985
No 186
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=36.26 E-value=19 Score=19.83 Aligned_cols=10 Identities=30% Similarity=0.813 Sum_probs=5.4
Q ss_pred CCCCCCCCcc
Q psy17880 63 TKCAQCGEYV 72 (120)
Q Consensus 63 ~~C~~C~~~i 72 (120)
.+|..|++.+
T Consensus 26 nRC~~CrKkv 35 (74)
T 1wfl_A 26 NRCFMCRKKV 35 (74)
T ss_dssp TBCSSSCCBC
T ss_pred CcChhhCCcc
Confidence 3565565544
No 187
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=36.03 E-value=32 Score=18.61 Aligned_cols=42 Identities=26% Similarity=0.418 Sum_probs=27.7
Q ss_pred cccccccccCCCCeeecCCee-ccHhHHHhHhCCCCCCCCCcccCc
Q psy17880 31 QCSVCKNSLAQGGYFNKDGAY-YCTSDYQKKFGTKCAQCGEYVEGE 75 (120)
Q Consensus 31 ~C~~C~~~l~~~~~~~~~~~~-~C~~c~~~~~~~~C~~C~~~i~~~ 75 (120)
.|..|...... ..+..=|.. +|..|.... ..|..|..+|...
T Consensus 20 ~C~IC~~~~~~-~v~~pCgH~~~C~~C~~~~--~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 20 LCMVCCEEEIN-STFCPCGHTVCCESCAAQL--QSCPVCRSRVEHV 62 (79)
T ss_dssp BCTTTSSSBCC-EEEETTCBCCBCHHHHTTC--SBCTTTCCBCCEE
T ss_pred EeEEeCcccCc-EEEECCCCHHHHHHHHHhc--CcCCCCCchhhCe
Confidence 56666555433 344555666 888888764 5888888888653
No 188
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=34.82 E-value=12 Score=14.68 Aligned_cols=12 Identities=25% Similarity=0.811 Sum_probs=8.5
Q ss_pred cccccCCCcCCC
Q psy17880 89 FTCARCRFSKKR 100 (120)
Q Consensus 89 f~C~~C~~~l~~ 100 (120)
|.|..|++.+..
T Consensus 4 ~~C~~C~k~f~~ 15 (27)
T 2kvh_A 4 FSCSLCPQRSRD 15 (27)
T ss_dssp EECSSSSCEESS
T ss_pred ccCCCcChhhCC
Confidence 567888877654
No 189
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=40.97 E-value=8.2 Score=15.04 Aligned_cols=13 Identities=23% Similarity=0.641 Sum_probs=9.1
Q ss_pred cccccCCCcCCCC
Q psy17880 89 FTCARCRFSKKRE 101 (120)
Q Consensus 89 f~C~~C~~~l~~~ 101 (120)
|.|..|++.+...
T Consensus 3 ~~C~~C~k~f~~~ 15 (26)
T 2lvu_A 3 YVCERCGKRFVQS 15 (26)
Confidence 5678888877543
No 190
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=33.40 E-value=13 Score=14.65 Aligned_cols=13 Identities=31% Similarity=0.695 Sum_probs=9.0
Q ss_pred cccccCCCcCCCC
Q psy17880 89 FTCARCRFSKKRE 101 (120)
Q Consensus 89 f~C~~C~~~l~~~ 101 (120)
|.|..|++.+...
T Consensus 3 ~~C~~C~k~f~~~ 15 (29)
T 1rik_A 3 FACPECPKRFMRS 15 (29)
T ss_dssp EECSSSSCEESCS
T ss_pred ccCCCCCchhCCH
Confidence 5678888776544
No 191
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=32.99 E-value=27 Score=16.16 Aligned_cols=24 Identities=25% Similarity=0.573 Sum_probs=12.4
Q ss_pred CCCCCCCcccCcEEEEeCcccccccc
Q psy17880 64 KCAQCGEYVEGEVVTALGKTYHQKCF 89 (120)
Q Consensus 64 ~C~~C~~~i~~~~~~~~~~~~H~~Cf 89 (120)
.|..|+.|=+ .+...++.|...|-
T Consensus 2 lC~~C~~peT--~l~~~~~~~~l~C~ 25 (36)
T 1k81_A 2 ICRECGKPDT--KIIKEGRVHLLKCM 25 (36)
T ss_dssp CCSSSCSCEE--EEEEETTEEEEEEE
T ss_pred CCcCCCCCCc--EEEEeCCcEEEEhh
Confidence 4666766532 23335566654443
No 192
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.92 E-value=29 Score=18.98 Aligned_cols=19 Identities=26% Similarity=0.707 Sum_probs=13.4
Q ss_pred cccccccc----------ccccCCCcCCC
Q psy17880 82 KTYHQKCF----------TCARCRFSKKR 100 (120)
Q Consensus 82 ~~~H~~Cf----------~C~~C~~~l~~ 100 (120)
+.||.+|. .|..|+..+..
T Consensus 42 h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 42 HFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 66777776 57788777653
No 193
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=31.46 E-value=15 Score=14.42 Aligned_cols=12 Identities=17% Similarity=0.523 Sum_probs=8.6
Q ss_pred cccccCCCcCCC
Q psy17880 89 FTCARCRFSKKR 100 (120)
Q Consensus 89 f~C~~C~~~l~~ 100 (120)
|.|..|++.+..
T Consensus 4 ~~C~~C~k~f~~ 15 (28)
T 2kvf_A 4 YSCSVCGKRFSL 15 (28)
T ss_dssp EECSSSCCEESC
T ss_pred ccCCCCCcccCC
Confidence 567888877654
No 194
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=30.90 E-value=35 Score=18.27 Aligned_cols=10 Identities=10% Similarity=0.175 Sum_probs=6.0
Q ss_pred CCCCCCCCcc
Q psy17880 63 TKCAQCGEYV 72 (120)
Q Consensus 63 ~~C~~C~~~i 72 (120)
..|..|+.++
T Consensus 11 L~CP~ck~~L 20 (67)
T 2jny_A 11 LACPKDKGPL 20 (67)
T ss_dssp CBCTTTCCBC
T ss_pred hCCCCCCCcC
Confidence 3566666655
No 195
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=30.88 E-value=15 Score=14.35 Aligned_cols=12 Identities=17% Similarity=0.484 Sum_probs=8.1
Q ss_pred cccccCCCcCCC
Q psy17880 89 FTCARCRFSKKR 100 (120)
Q Consensus 89 f~C~~C~~~l~~ 100 (120)
|.|..|++.+..
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 2m0f_A 3 LKCRECGKQFTT 14 (29)
T ss_dssp EECTTTSCEESC
T ss_pred ccCCCCCCccCC
Confidence 567778776643
No 196
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.80 E-value=61 Score=16.85 Aligned_cols=43 Identities=19% Similarity=0.393 Sum_probs=28.2
Q ss_pred ccccccccccCCCCeeecCCee-ccHhHHHhHhCCCCCCCCCcccCc
Q psy17880 30 FQCSVCKNSLAQGGYFNKDGAY-YCTSDYQKKFGTKCAQCGEYVEGE 75 (120)
Q Consensus 30 f~C~~C~~~l~~~~~~~~~~~~-~C~~c~~~~~~~~C~~C~~~i~~~ 75 (120)
..|..|-..... ..+..=+.. +|..|... ...|..|..+|...
T Consensus 16 ~~C~IC~~~~~~-~v~~pCgH~~~C~~C~~~--~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 16 KDCVVCQNGTVN-WVLLPCRHTCLCDGCVKY--FQQCPMCRQFVQES 59 (68)
T ss_dssp SCCSSSSSSCCC-CEETTTTBCCSCTTHHHH--CSSCTTTCCCCCCE
T ss_pred CCCCCcCcCCCC-EEEECCCChhhhHHHHhc--CCCCCCCCcchhce
Confidence 456666554432 344445666 89999875 37899999988653
No 197
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=30.56 E-value=47 Score=16.06 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=15.7
Q ss_pred cccccccccCCCCeeecCCeeccHhHHHh
Q psy17880 31 QCSVCKNSLAQGGYFNKDGAYYCTSDYQK 59 (120)
Q Consensus 31 ~C~~C~~~l~~~~~~~~~~~~~C~~c~~~ 59 (120)
.|+.|+..-...--...+|..+|..|-..
T Consensus 3 ~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~ 31 (43)
T 2vut_I 3 TCTNCFTQTTPLWRRNPEGQPLCNACGLF 31 (43)
T ss_dssp CCSSSCCCCCSCCEECTTSCEECHHHHHH
T ss_pred cCCccCCCCCCccccCCCCCcccHHHHHH
Confidence 35556554333222234566888888653
No 198
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=30.49 E-value=64 Score=18.30 Aligned_cols=43 Identities=16% Similarity=0.354 Sum_probs=25.0
Q ss_pred ccccccccccCCCC--------------e---eecCCeeccHhHHHhHh-------CCCCCCCCCcc
Q psy17880 30 FQCSVCKNSLAQGG--------------Y---FNKDGAYYCTSDYQKKF-------GTKCAQCGEYV 72 (120)
Q Consensus 30 f~C~~C~~~l~~~~--------------~---~~~~~~~~C~~c~~~~~-------~~~C~~C~~~i 72 (120)
..|..|-..|.... . ...=+..||..|..+-+ ...|..|...+
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~ 92 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY 92 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBS
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCcc
Confidence 46778877764321 0 22345677777776544 34677776655
No 199
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=29.83 E-value=6 Score=25.84 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=20.4
Q ss_pred cccccccCCCcCCCCceeeeCCeeeeccCCCcCC
Q psy17880 87 KCFTCARCRFSKKREIYNWLGGRAYENRLGGRAY 120 (120)
Q Consensus 87 ~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~~~~~~ 120 (120)
.=..|..|+..+... |+.+|..|+.++|
T Consensus 162 ~~~~C~~CGE~~~~~------g~~~C~~C~~~~~ 189 (191)
T 3d00_A 162 KIVLCPQCREAYPAQ------DGELCLSCQGGSP 189 (191)
T ss_dssp CEEECTTTCCEEEGG------GCSSCHHHHTTCC
T ss_pred CCEECCcCCCChhhC------CCcCCccccCCCC
Confidence 345699998766433 8899999887765
No 200
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=35.73 E-value=11 Score=15.00 Aligned_cols=13 Identities=15% Similarity=0.562 Sum_probs=9.3
Q ss_pred cccccCCCcCCCC
Q psy17880 89 FTCARCRFSKKRE 101 (120)
Q Consensus 89 f~C~~C~~~l~~~ 101 (120)
|.|..|++.+...
T Consensus 4 ~~C~~C~k~f~~~ 16 (30)
T 2lvr_A 4 YVCIHCQRQFADP 16 (30)
Confidence 6788888877544
No 201
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.43 E-value=17 Score=19.96 Aligned_cols=27 Identities=26% Similarity=0.535 Sum_probs=15.9
Q ss_pred CCCCCCCcccC-cEEE--EeCccccccccc
Q psy17880 64 KCAQCGEYVEG-EVVT--ALGKTYHQKCFT 90 (120)
Q Consensus 64 ~C~~C~~~i~~-~~~~--~~~~~~H~~Cf~ 90 (120)
.|..|++.-.+ ++|. .-++.||..|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~ 57 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLN 57 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSS
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccC
Confidence 56777765433 3442 334678987763
No 202
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=29.31 E-value=39 Score=18.09 Aligned_cols=9 Identities=11% Similarity=0.231 Sum_probs=5.6
Q ss_pred CCCCCCCcc
Q psy17880 64 KCAQCGEYV 72 (120)
Q Consensus 64 ~C~~C~~~i 72 (120)
.|..|+.++
T Consensus 10 ~CP~ck~~L 18 (68)
T 2jr6_A 10 VCPVTKGRL 18 (68)
T ss_dssp BCSSSCCBC
T ss_pred ECCCCCCcC
Confidence 566666655
No 203
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=29.18 E-value=44 Score=23.06 Aligned_cols=45 Identities=16% Similarity=0.327 Sum_probs=31.6
Q ss_pred ccccccccccccCCCCeee-cCCeeccHhHHHhHhCC----CCCC--CCCccc
Q psy17880 28 TCFQCSVCKNSLAQGGYFN-KDGAYYCTSDYQKKFGT----KCAQ--CGEYVE 73 (120)
Q Consensus 28 ~Cf~C~~C~~~l~~~~~~~-~~~~~~C~~c~~~~~~~----~C~~--C~~~i~ 73 (120)
.=|+|..|...+.. .... .-|..||..|..+.+.. .|.. |.+++.
T Consensus 180 ~el~CPIcl~~f~D-PVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 180 IELTCPITCKPYEA-PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp CCSBCTTTSSBCSS-EEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred eeeECcCccCcccC-CeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 34788889888865 4543 67889999988776532 4776 777663
No 204
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=29.08 E-value=39 Score=18.11 Aligned_cols=9 Identities=22% Similarity=0.623 Sum_probs=5.3
Q ss_pred CCCCCCCcc
Q psy17880 64 KCAQCGEYV 72 (120)
Q Consensus 64 ~C~~C~~~i 72 (120)
.|..|+.++
T Consensus 10 ~CP~ck~~L 18 (68)
T 2hf1_A 10 VCPLCKGPL 18 (68)
T ss_dssp BCTTTCCBC
T ss_pred ECCCCCCcC
Confidence 466666555
No 205
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=28.95 E-value=58 Score=23.70 Aligned_cols=44 Identities=23% Similarity=0.422 Sum_probs=22.2
Q ss_pred ccccccccccCCCCeeecCCeeccHhHHHhHh---CCCCCCCCCcccC
Q psy17880 30 FQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKF---GTKCAQCGEYVEG 74 (120)
Q Consensus 30 f~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~---~~~C~~C~~~i~~ 74 (120)
..|..|-..+.. .....=|..+|..|..... ...|..|..+|..
T Consensus 333 ~~C~ICle~~~~-pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 333 QLCKICAENDKD-VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SBCTTTSSSBCC-EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCccCcCCCC-eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 345555444432 2334445566666664332 3566666666643
No 206
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=28.84 E-value=17 Score=14.28 Aligned_cols=12 Identities=25% Similarity=0.570 Sum_probs=8.4
Q ss_pred cccccCCCcCCC
Q psy17880 89 FTCARCRFSKKR 100 (120)
Q Consensus 89 f~C~~C~~~l~~ 100 (120)
|.|..|++.+..
T Consensus 4 ~~C~~C~~~f~~ 15 (30)
T 2m0d_A 4 YQCDYCGRSFSD 15 (30)
T ss_dssp EECTTTCCEESC
T ss_pred ccCCCCCcccCC
Confidence 567888877654
No 207
>2lbz_A Thuricin17, thurincin H; helical loops, crosslinked, antimicrobial protein; HET: DSG 2TL DSN; NMR {Bacillus thuringiensis}
Probab=27.55 E-value=25 Score=15.29 Aligned_cols=12 Identities=33% Similarity=1.104 Sum_probs=8.9
Q ss_pred cccccccccccc
Q psy17880 28 TCFQCSVCKNSL 39 (120)
Q Consensus 28 ~Cf~C~~C~~~l 39 (120)
.|+.|..|+..|
T Consensus 6 sclvcaacsvel 17 (31)
T 2lbz_A 6 SCLVCAACSVEL 17 (31)
T ss_dssp GGGGGGGCCSCS
T ss_pred HHHHHHHhHHHH
Confidence 578888887665
No 208
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=27.44 E-value=26 Score=14.85 Aligned_cols=13 Identities=38% Similarity=0.695 Sum_probs=9.5
Q ss_pred ccccccCCCcCCC
Q psy17880 88 CFTCARCRFSKKR 100 (120)
Q Consensus 88 Cf~C~~C~~~l~~ 100 (120)
=|.|..|++.+..
T Consensus 11 ~~~C~~C~k~f~~ 23 (37)
T 1p7a_A 11 PFQCPDCDRSFSR 23 (37)
T ss_dssp SBCCTTTCCCBSS
T ss_pred CccCCCCCcccCc
Confidence 3778888887754
No 209
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=33.40 E-value=13 Score=14.76 Aligned_cols=13 Identities=15% Similarity=0.404 Sum_probs=9.2
Q ss_pred cccccCCCcCCCC
Q psy17880 89 FTCARCRFSKKRE 101 (120)
Q Consensus 89 f~C~~C~~~l~~~ 101 (120)
|.|..|++.+...
T Consensus 3 ~~C~~C~k~f~~~ 15 (29)
T 2lvt_A 3 CQCVMCGKAFTQA 15 (29)
Confidence 5688888877544
No 210
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.34 E-value=27 Score=14.59 Aligned_cols=13 Identities=23% Similarity=0.419 Sum_probs=9.6
Q ss_pred cccccCCCcCCCC
Q psy17880 89 FTCARCRFSKKRE 101 (120)
Q Consensus 89 f~C~~C~~~l~~~ 101 (120)
|.|..|++.+...
T Consensus 10 ~~C~~C~k~f~~~ 22 (36)
T 2elr_A 10 HLCDMCGKKFKSK 22 (36)
T ss_dssp CBCTTTCCBCSSH
T ss_pred eecCcCCCCcCch
Confidence 6788888877543
No 211
>4av1_A Poly [ADP-ribose] polymerase 1; transferase, PARP1, DNA-binding domain, DBD, DNA repair, CAN poly- ADP(ribosyl)ation; 3.10A {Homo sapiens} PDB: 2l30_A
Probab=27.10 E-value=13 Score=24.88 Aligned_cols=30 Identities=23% Similarity=0.705 Sum_probs=18.9
Q ss_pred CccccccccccccceE------EEC---C---cccccccccc
Q psy17880 3 KAYCTSCKKKCSGEVL------RVQ---D---KYFHITCFQC 32 (120)
Q Consensus 3 ~~~C~~C~~~i~~~~~------~~~---~---~~~H~~Cf~C 32 (120)
...|..|++.|....+ ... | ..||..||.=
T Consensus 39 RA~Ck~Ck~kI~Kg~LRig~~v~~~~~dG~~~~W~H~~Cf~~ 80 (223)
T 4av1_A 39 RASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWK 80 (223)
T ss_dssp TCBCTTTCCBCCTTCEEEEEEEEETTTTEEEEEEEEHHHHTT
T ss_pred CccCcccCCccCCCceEEEEEecCCCCCCCCceeEChhhhhh
Confidence 4579999999953322 111 1 3578889874
No 212
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.07 E-value=32 Score=17.30 Aligned_cols=26 Identities=27% Similarity=0.999 Sum_probs=14.4
Q ss_pred ccccccccccccceEEEC--Cccccccccc
Q psy17880 4 AYCTSCKKKCSGEVLRVQ--DKYFHITCFQ 31 (120)
Q Consensus 4 ~~C~~C~~~i~~~~~~~~--~~~~H~~Cf~ 31 (120)
..|..|++. +++|.-. ++.||..|+.
T Consensus 10 ~~C~vC~~~--g~ll~Cd~C~~~~H~~Cl~ 37 (56)
T 2yql_A 10 DFCSVCRKS--GQLLMCDTCSRVYHLDCLD 37 (56)
T ss_dssp CSCSSSCCS--SCCEECSSSSCEECSSSSS
T ss_pred CCCccCCCC--CeEEEcCCCCcceECccCC
Confidence 356677763 4444333 4567777643
No 213
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.88 E-value=17 Score=22.29 Aligned_cols=12 Identities=25% Similarity=0.764 Sum_probs=9.6
Q ss_pred Cccccccccccc
Q psy17880 3 KAYCTSCKKKCS 14 (120)
Q Consensus 3 ~~~C~~C~~~i~ 14 (120)
...|..|++.|.
T Consensus 27 RA~CK~C~~kI~ 38 (134)
T 2cs2_A 27 RSTCKGCMEKIE 38 (134)
T ss_dssp CCBCSSSCCBCC
T ss_pred CccchhcCCccc
Confidence 357999999985
No 214
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=26.78 E-value=49 Score=17.59 Aligned_cols=47 Identities=21% Similarity=0.561 Sum_probs=22.9
Q ss_pred cccccccccccc-eEEEC--CcccccccccccccccccCCCCeeecCCeeccHhHHHhH
Q psy17880 5 YCTSCKKKCSGE-VLRVQ--DKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKK 60 (120)
Q Consensus 5 ~C~~C~~~i~~~-~~~~~--~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~ 60 (120)
.|..|+++-.+. .|.-. +..||..|..= ++.. ..++..+|..|..+.
T Consensus 20 ~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~-----~~~~----~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 20 ICPGCNKPDDGSPMIGCDDCDDWYHWPCVGI-----MAAP----PEEMQWFCPKCANKI 69 (75)
T ss_dssp CBTTTTBCCSSCCEEECSSSSSEEEHHHHTC-----SSCC----CSSSCCCCTTTHHHH
T ss_pred CCCCCCCCCCCCCEEEcCCCCcccccccCCC-----CccC----CCCCCEEChhccCch
Confidence 466777765543 33222 34567665421 1111 113466777776543
No 215
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=26.78 E-value=28 Score=14.52 Aligned_cols=13 Identities=31% Similarity=0.695 Sum_probs=9.3
Q ss_pred cccccCCCcCCCC
Q psy17880 89 FTCARCRFSKKRE 101 (120)
Q Consensus 89 f~C~~C~~~l~~~ 101 (120)
|.|..|++.+...
T Consensus 3 ~~C~~C~k~F~~~ 15 (33)
T 1rim_A 3 FACPECPKRFMRS 15 (33)
T ss_dssp CCCSSSCCCCSSH
T ss_pred ccCCCCCchhCCH
Confidence 5788888877543
No 216
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=26.67 E-value=38 Score=18.24 Aligned_cols=10 Identities=20% Similarity=0.564 Sum_probs=6.3
Q ss_pred CCCCCCCCcc
Q psy17880 63 TKCAQCGEYV 72 (120)
Q Consensus 63 ~~C~~C~~~i 72 (120)
..|..|+.++
T Consensus 9 L~CP~ck~~L 18 (70)
T 2js4_A 9 LVCPVCKGRL 18 (70)
T ss_dssp CBCTTTCCBE
T ss_pred eECCCCCCcC
Confidence 3567776665
No 217
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=26.31 E-value=46 Score=16.93 Aligned_cols=48 Identities=21% Similarity=0.667 Sum_probs=28.3
Q ss_pred CccccccccccccceEEEC--CcccccccccccccccccCCCCeeecCCeeccHhHHHhHh
Q psy17880 3 KAYCTSCKKKCSGEVLRVQ--DKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKF 61 (120)
Q Consensus 3 ~~~C~~C~~~i~~~~~~~~--~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~~ 61 (120)
...|..|+.. +++|.-. ++.||..|+.= +|.. .-.+.-+|..|..+..
T Consensus 5 ~~~C~vC~~~--g~ll~Cd~C~~~fH~~Cl~p-----pl~~----~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 5 EDFCSVCRKS--GQLLMCDTCSRVYHLDCLDP-----PLKT----IPKGMWICPRCQDQML 54 (60)
T ss_dssp CSSCTTTCCC--SSCEECSSSSCEECGGGSSS-----CCSS----CCCSCCCCHHHHHHHH
T ss_pred CCCCcCCCCC--CcEEEcCCCCcCEECCcCCC-----CcCC----CCCCceEChhccChhh
Confidence 3467888774 4555443 56788877542 2322 1245778998876543
No 218
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=25.90 E-value=15 Score=14.41 Aligned_cols=12 Identities=25% Similarity=0.700 Sum_probs=8.3
Q ss_pred cccccCCCcCCC
Q psy17880 89 FTCARCRFSKKR 100 (120)
Q Consensus 89 f~C~~C~~~l~~ 100 (120)
|.|..|++.+..
T Consensus 4 ~~C~~C~k~f~~ 15 (27)
T 2kvg_A 4 YRCPLCRAGCPS 15 (27)
T ss_dssp EEETTTTEEESC
T ss_pred cCCCCCCcccCC
Confidence 567788776654
No 219
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=25.50 E-value=22 Score=15.35 Aligned_cols=9 Identities=22% Similarity=0.239 Sum_probs=5.2
Q ss_pred CeeeeccCC
Q psy17880 108 GRAYENRLG 116 (120)
Q Consensus 108 g~~yC~~~~ 116 (120)
.+|||+.+-
T Consensus 2 ~RpYCe~CE 10 (26)
T 2hqh_E 2 SRPYCEICE 10 (26)
T ss_dssp --CEETTTT
T ss_pred CCccchHHH
Confidence 578888764
No 220
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=25.47 E-value=12 Score=25.77 Aligned_cols=12 Identities=42% Similarity=1.221 Sum_probs=9.8
Q ss_pred CCCCCCCCCccc
Q psy17880 62 GTKCAQCGEYVE 73 (120)
Q Consensus 62 ~~~C~~C~~~i~ 73 (120)
+..|..|+.+|.
T Consensus 242 G~pC~~CG~~I~ 253 (271)
T 2xzf_A 242 GEKCSRCGAEIQ 253 (271)
T ss_dssp TSBCTTTCCBCE
T ss_pred CCCCCCCCCEee
Confidence 467999999985
No 221
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=25.43 E-value=53 Score=18.51 Aligned_cols=10 Identities=30% Similarity=0.850 Sum_probs=6.0
Q ss_pred CCCCCCCCcc
Q psy17880 63 TKCAQCGEYV 72 (120)
Q Consensus 63 ~~C~~C~~~i 72 (120)
.+|..|++.+
T Consensus 26 ~rC~~C~kkv 35 (85)
T 1wff_A 26 KHCFLCGKKT 35 (85)
T ss_dssp CBCSSSCCBC
T ss_pred ccchhhCCee
Confidence 4666666654
No 222
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=25.21 E-value=12 Score=25.70 Aligned_cols=12 Identities=33% Similarity=0.872 Sum_probs=9.4
Q ss_pred CCCCCCCCCccc
Q psy17880 62 GTKCAQCGEYVE 73 (120)
Q Consensus 62 ~~~C~~C~~~i~ 73 (120)
+..|..|+.+|.
T Consensus 240 g~pC~~CG~~I~ 251 (268)
T 1k82_A 240 GEPCRVCGTPIV 251 (268)
T ss_dssp TSBCTTTCCBCE
T ss_pred CCCCCCCCCEee
Confidence 467888998885
No 223
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=24.72 E-value=12 Score=25.52 Aligned_cols=12 Identities=42% Similarity=1.198 Sum_probs=8.9
Q ss_pred CCCCCCCCCccc
Q psy17880 62 GTKCAQCGEYVE 73 (120)
Q Consensus 62 ~~~C~~C~~~i~ 73 (120)
+..|..|+.+|.
T Consensus 234 g~pC~~CG~~I~ 245 (262)
T 1k3x_A 234 GEPCERCGSIIE 245 (262)
T ss_dssp TSBCTTTCCBCE
T ss_pred cCCCCCCCCEeE
Confidence 456888888885
No 224
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=24.29 E-value=55 Score=18.01 Aligned_cols=32 Identities=13% Similarity=0.279 Sum_probs=21.0
Q ss_pred ccccccccccCCCCeee--cCCeeccHhHHHhHh
Q psy17880 30 FQCSVCKNSLAQGGYFN--KDGAYYCTSDYQKKF 61 (120)
Q Consensus 30 f~C~~C~~~l~~~~~~~--~~~~~~C~~c~~~~~ 61 (120)
+.|..|-..+.....+. .=+..||..|....+
T Consensus 6 ~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~ 39 (94)
T 1wim_A 6 SGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYV 39 (94)
T ss_dssp CCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHH
T ss_pred cCCcccCcccccccceEcCCCCCcccHHHHHHHH
Confidence 56777876665443432 368889999876543
No 225
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=24.26 E-value=53 Score=15.95 Aligned_cols=13 Identities=23% Similarity=0.836 Sum_probs=8.3
Q ss_pred cccccCCCcCCCC
Q psy17880 89 FTCARCRFSKKRE 101 (120)
Q Consensus 89 f~C~~C~~~l~~~ 101 (120)
+.|..|+..+...
T Consensus 25 lvC~~CG~v~~e~ 37 (50)
T 1pft_A 25 IVCAKCGYVIEEN 37 (50)
T ss_dssp EEESSSCCBCCCC
T ss_pred EECcccCCccccc
Confidence 5677777766443
No 226
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=24.19 E-value=44 Score=17.92 Aligned_cols=10 Identities=20% Similarity=0.551 Sum_probs=6.3
Q ss_pred CCCCCCCCcc
Q psy17880 63 TKCAQCGEYV 72 (120)
Q Consensus 63 ~~C~~C~~~i 72 (120)
..|..|+.++
T Consensus 9 L~CP~ck~~L 18 (69)
T 2pk7_A 9 LACPICKGPL 18 (69)
T ss_dssp CCCTTTCCCC
T ss_pred eeCCCCCCcC
Confidence 3566776665
No 227
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=24.07 E-value=13 Score=25.62 Aligned_cols=12 Identities=42% Similarity=1.129 Sum_probs=9.2
Q ss_pred CCCCCCCCCccc
Q psy17880 62 GTKCAQCGEYVE 73 (120)
Q Consensus 62 ~~~C~~C~~~i~ 73 (120)
+..|..|+.+|.
T Consensus 245 g~pC~~CG~~I~ 256 (273)
T 3u6p_A 245 GNPCKRCGTPIE 256 (273)
T ss_dssp TSBCTTTCCBCE
T ss_pred cCCCCCCCCeEE
Confidence 457888888884
No 228
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=23.98 E-value=81 Score=16.02 Aligned_cols=43 Identities=21% Similarity=0.478 Sum_probs=25.8
Q ss_pred cccccccccCCCCeee--cCCee-ccHhHHHhHh--CCCCCCCCCcccC
Q psy17880 31 QCSVCKNSLAQGGYFN--KDGAY-YCTSDYQKKF--GTKCAQCGEYVEG 74 (120)
Q Consensus 31 ~C~~C~~~l~~~~~~~--~~~~~-~C~~c~~~~~--~~~C~~C~~~i~~ 74 (120)
.|..|-....+. .+. .=|.. +|..|..+.. ...|..|.++|..
T Consensus 10 ~C~IC~~~~~~~-~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 10 PCVICQGRPKNG-CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp CCTTTSSSCSCE-EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CCCcCCCCCCCE-EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 355554444332 222 34555 7888887654 2579999999864
No 229
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=23.88 E-value=43 Score=18.67 Aligned_cols=52 Identities=13% Similarity=0.409 Sum_probs=30.1
Q ss_pred ccccccccccc---cceEEEC--CcccccccccccccccccCCCCeeecCCeeccHhHHHhH
Q psy17880 4 AYCTSCKKKCS---GEVLRVQ--DKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKK 60 (120)
Q Consensus 4 ~~C~~C~~~i~---~~~~~~~--~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~ 60 (120)
..|..|+..-. +.+|.-. +..||..|+.= +|.........+..+|..|....
T Consensus 17 ~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~P-----pl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 17 LACVVCRQMTVASGNQLVECQECHNLYHQDCHKP-----QVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp CSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSS-----CCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CcCCCCCCCCCCCCCceEECCCCCCeEcCccCCC-----cccccccCCCCCCeeCccccchh
Confidence 46888887642 3455444 56788877432 22211112346778899987654
No 230
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=23.49 E-value=38 Score=16.89 Aligned_cols=15 Identities=20% Similarity=0.576 Sum_probs=9.2
Q ss_pred cccccCCCcCCCCce
Q psy17880 89 FTCARCRFSKKREIY 103 (120)
Q Consensus 89 f~C~~C~~~l~~~~~ 103 (120)
++|.+|++.++.++.
T Consensus 4 Y~C~rCg~~fs~~el 18 (48)
T 4ayb_P 4 YRCGKCWKTFTDEQL 18 (48)
T ss_dssp -CCCCTTTTCCCCCS
T ss_pred EEeeccCCCccHHHH
Confidence 456777777766554
No 231
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=23.42 E-value=24 Score=14.62 Aligned_cols=12 Identities=25% Similarity=0.492 Sum_probs=9.0
Q ss_pred cccccCCCcCCC
Q psy17880 89 FTCARCRFSKKR 100 (120)
Q Consensus 89 f~C~~C~~~l~~ 100 (120)
|.|..|++.+..
T Consensus 8 ~~C~~C~k~f~~ 19 (35)
T 2elx_A 8 YVCALCLKKFVS 19 (35)
T ss_dssp EECSSSCCEESS
T ss_pred eECCCCcchhCC
Confidence 678888887754
No 232
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.38 E-value=35 Score=14.89 Aligned_cols=14 Identities=21% Similarity=0.643 Sum_probs=10.4
Q ss_pred ccccccCCCcCCCC
Q psy17880 88 CFTCARCRFSKKRE 101 (120)
Q Consensus 88 Cf~C~~C~~~l~~~ 101 (120)
=|.|..|++.+...
T Consensus 10 ~~~C~~C~k~f~~~ 23 (42)
T 2yte_A 10 PYSCAECKETFSDN 23 (42)
T ss_dssp SCBCTTTCCBCSSH
T ss_pred CeECCCCCCccCCH
Confidence 37888998887653
No 233
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=23.37 E-value=40 Score=24.00 Aligned_cols=41 Identities=22% Similarity=0.429 Sum_probs=18.9
Q ss_pred ccccccccccCCCCeeecCCee-ccHhHHHhHhCCCCCCCCCccc
Q psy17880 30 FQCSVCKNSLAQGGYFNKDGAY-YCTSDYQKKFGTKCAQCGEYVE 73 (120)
Q Consensus 30 f~C~~C~~~l~~~~~~~~~~~~-~C~~c~~~~~~~~C~~C~~~i~ 73 (120)
+.|..|-..+.. ..+..=|.. +|..|.... ..|..|..+|.
T Consensus 296 ~~C~IC~~~~~~-~v~lpCgH~~fC~~C~~~~--~~CP~CR~~i~ 337 (345)
T 3t6p_A 296 RTCKVCMDKEVS-VVFIPCGHLVVCQECAPSL--RKCPICRGIIK 337 (345)
T ss_dssp CBCTTTSSSBCC-EEEETTCCEEECTTTGGGC--SBCTTTCCBCC
T ss_pred CCCCccCCcCCc-eEEcCCCChhHhHHHHhcC--CcCCCCCCCcc
Confidence 345555444432 223334444 555555433 45555555553
No 234
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=23.13 E-value=24 Score=14.68 Aligned_cols=12 Identities=25% Similarity=0.548 Sum_probs=9.0
Q ss_pred cccccCCCcCCC
Q psy17880 89 FTCARCRFSKKR 100 (120)
Q Consensus 89 f~C~~C~~~l~~ 100 (120)
|.|..|++.+..
T Consensus 8 ~~C~~C~k~f~~ 19 (35)
T 1srk_A 8 FVCRICLSAFTT 19 (35)
T ss_dssp EECSSSCCEESS
T ss_pred eeCCCCCcccCC
Confidence 678888887754
No 235
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=23.07 E-value=46 Score=17.15 Aligned_cols=52 Identities=17% Similarity=0.421 Sum_probs=29.1
Q ss_pred Cccccccccccc---cceEEEC--CcccccccccccccccccCCCCeeecCCeeccHhHHHhH
Q psy17880 3 KAYCTSCKKKCS---GEVLRVQ--DKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKK 60 (120)
Q Consensus 3 ~~~C~~C~~~i~---~~~~~~~--~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~ 60 (120)
...|..|+..-. +.+|.-. +..||..|..= +|.. .....++..+|..|-...
T Consensus 6 ~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p-----~l~~-~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 6 SGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTP-----HIDS-SVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSS-----CCCH-HHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCC-----cccc-cccCCCCCEECCCCcCcc
Confidence 357888887632 4455444 56788877432 2211 001134677898887653
No 236
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=22.94 E-value=59 Score=17.19 Aligned_cols=9 Identities=44% Similarity=0.992 Sum_probs=4.2
Q ss_pred CCCCCCCcc
Q psy17880 64 KCAQCGEYV 72 (120)
Q Consensus 64 ~C~~C~~~i 72 (120)
+|..|+..+
T Consensus 23 ~C~~Cg~~~ 31 (63)
T 3h0g_L 23 LCADCGARN 31 (63)
T ss_dssp BCSSSCCBC
T ss_pred ECCCCCCee
Confidence 444554444
No 237
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=22.74 E-value=39 Score=15.23 Aligned_cols=14 Identities=29% Similarity=0.607 Sum_probs=10.7
Q ss_pred ccccccCCCcCCCC
Q psy17880 88 CFTCARCRFSKKRE 101 (120)
Q Consensus 88 Cf~C~~C~~~l~~~ 101 (120)
=|.|..|++.+...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2ely_A 12 PFKCVECGKGFSRR 25 (46)
T ss_dssp SBCCSSSCCCBSST
T ss_pred CcccCccCcccCCH
Confidence 37889999888654
No 238
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=22.59 E-value=25 Score=15.98 Aligned_cols=14 Identities=21% Similarity=0.532 Sum_probs=10.4
Q ss_pred ccccccCCCcCCCC
Q psy17880 88 CFTCARCRFSKKRE 101 (120)
Q Consensus 88 Cf~C~~C~~~l~~~ 101 (120)
=|.|..|++.+...
T Consensus 8 p~~C~~CgK~F~~~ 21 (36)
T 1fv5_A 8 RFMCLPCGIAFSSP 21 (36)
T ss_dssp CCEETTTTEECSCH
T ss_pred CeECCCCCCccCCH
Confidence 37888898887654
No 239
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.18 E-value=86 Score=19.75 Aligned_cols=33 Identities=24% Similarity=0.537 Sum_probs=20.1
Q ss_pred HHHhHhCCCCCCCCCcccCcEEEE--eCcccccccccc
Q psy17880 56 DYQKKFGTKCAQCGEYVEGEVVTA--LGKTYHQKCFTC 91 (120)
Q Consensus 56 c~~~~~~~~C~~C~~~i~~~~~~~--~~~~~H~~Cf~C 91 (120)
-|.+.| ..|..|+.|= ..+.. .++.|...|-.|
T Consensus 98 ~yI~~Y-VlC~~C~sPd--T~L~~~~~~r~~~l~C~AC 132 (157)
T 2e9h_A 98 GFIKKF-VLCPECENPE--TDLHVNPKKQTIGNSCKAC 132 (157)
T ss_dssp HHHHHT-TSCTTTCCSC--CEEEEETTTTEEEEECSSS
T ss_pred HHHHHe-EECCCCCCCc--cEEEEecCCCEEEEEccCC
Confidence 344444 7899998873 23343 567777655444
No 240
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=21.90 E-value=49 Score=19.15 Aligned_cols=50 Identities=18% Similarity=0.513 Sum_probs=29.5
Q ss_pred ccccccccccc--cceEEEC---CcccccccccccccccccCCCCee----ecCCeeccHhHHHhH
Q psy17880 4 AYCTSCKKKCS--GEVLRVQ---DKYFHITCFQCSVCKNSLAQGGYF----NKDGAYYCTSDYQKK 60 (120)
Q Consensus 4 ~~C~~C~~~i~--~~~~~~~---~~~~H~~Cf~C~~C~~~l~~~~~~----~~~~~~~C~~c~~~~ 60 (120)
-.|..|+++.. +..|.-. ...||..|.. |....+. ..+++.+|..|..+.
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVg-------lt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTG-------MTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTT-------CCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCC-------cCHHHHHhhccCCCCCEECccccCcC
Confidence 36999999973 3455554 4567877742 2111111 134678899998654
No 241
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=21.87 E-value=48 Score=18.35 Aligned_cols=15 Identities=33% Similarity=0.669 Sum_probs=9.5
Q ss_pred CCCCCCCC-cccCcEE
Q psy17880 63 TKCAQCGE-YVEGEVV 77 (120)
Q Consensus 63 ~~C~~C~~-~i~~~~~ 77 (120)
..|..|++ +|.|.+.
T Consensus 22 ~~Cd~C~~~pI~G~Ry 37 (82)
T 2fc7_A 22 FKCDNCGIEPIQGVRW 37 (82)
T ss_dssp CCCSSSCCSSEESCEE
T ss_pred CCCCCCCCCcceeceE
Confidence 56777775 6766543
No 242
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.75 E-value=28 Score=14.62 Aligned_cols=12 Identities=25% Similarity=1.060 Sum_probs=9.0
Q ss_pred cccccCCCcCCC
Q psy17880 89 FTCARCRFSKKR 100 (120)
Q Consensus 89 f~C~~C~~~l~~ 100 (120)
|.|..|++.+..
T Consensus 10 ~~C~~C~k~f~~ 21 (36)
T 2elq_A 10 FKCSLCEYATRS 21 (36)
T ss_dssp EECSSSSCEESC
T ss_pred ccCCCCCchhCC
Confidence 678888887754
No 243
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=21.36 E-value=16 Score=24.71 Aligned_cols=32 Identities=19% Similarity=0.334 Sum_probs=16.9
Q ss_pred CCCCCCCCcccCc-E--EEEeCccccccccccccCCCcCC
Q psy17880 63 TKCAQCGEYVEGE-V--VTALGKTYHQKCFTCARCRFSKK 99 (120)
Q Consensus 63 ~~C~~C~~~i~~~-~--~~~~~~~~H~~Cf~C~~C~~~l~ 99 (120)
..|.+|...|++. + |.. +... ..|..|++.|-
T Consensus 199 ~~C~GC~~~lppq~~~~i~~-~~~I----v~Cp~CgRIL~ 233 (256)
T 3na7_A 199 QACGGCFIRLNDKIYTEVLT-SGDM----ITCPYCGRILY 233 (256)
T ss_dssp TBCTTTCCBCCHHHHHHHHH-SSSC----EECTTTCCEEE
T ss_pred CccCCCCeeeCHHHHHHHHC-CCCE----EECCCCCeeEE
Confidence 4678887777542 1 111 1111 45777777663
No 244
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=21.27 E-value=66 Score=18.46 Aligned_cols=36 Identities=17% Similarity=0.309 Sum_probs=23.0
Q ss_pred cccccccccccccc-ccCCCCee--ecCCeeccHhHHHhH
Q psy17880 24 YFHITCFQCSVCKN-SLAQGGYF--NKDGAYYCTSDYQKK 60 (120)
Q Consensus 24 ~~H~~Cf~C~~C~~-~l~~~~~~--~~~~~~~C~~c~~~~ 60 (120)
..|+. ..|..|+. ++.+..|. .=.+--+|..||...
T Consensus 27 ~~H~g-v~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~ 65 (98)
T 2dip_A 27 DKHLG-IPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSY 65 (98)
T ss_dssp SSCCC-CCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTT
T ss_pred cccCC-CCCcCCCCCCcccCeEECCCCCCccHHHHHHccC
Confidence 36665 78888886 56554333 233455899998763
No 245
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.24 E-value=28 Score=14.52 Aligned_cols=13 Identities=15% Similarity=0.774 Sum_probs=9.3
Q ss_pred ccccccCCCcCCC
Q psy17880 88 CFTCARCRFSKKR 100 (120)
Q Consensus 88 Cf~C~~C~~~l~~ 100 (120)
-|.|..|++.+..
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2elt_A 9 PYKCPQCSYASAI 21 (36)
T ss_dssp SEECSSSSCEESS
T ss_pred CCCCCCCCcccCC
Confidence 3678888887654
No 246
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.06 E-value=41 Score=15.15 Aligned_cols=14 Identities=21% Similarity=0.546 Sum_probs=10.9
Q ss_pred ccccccCCCcCCCC
Q psy17880 88 CFTCARCRFSKKRE 101 (120)
Q Consensus 88 Cf~C~~C~~~l~~~ 101 (120)
-|.|..|++.+...
T Consensus 12 ~~~C~~C~k~F~~~ 25 (46)
T 2enh_A 12 PYECDVCRKAFSHH 25 (46)
T ss_dssp SCBCTTTCCBCSSS
T ss_pred CcCCCCcCchhCCH
Confidence 47899999888654
No 247
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=21.05 E-value=37 Score=17.50 Aligned_cols=12 Identities=42% Similarity=0.753 Sum_probs=6.8
Q ss_pred CCcccccccccc
Q psy17880 2 IKAYCTSCKKKC 13 (120)
Q Consensus 2 ~~~~C~~C~~~i 13 (120)
.+..|..|+++|
T Consensus 2 iPVRCFTCGkvi 13 (55)
T 1ef4_A 2 IPVRCLSCGKPV 13 (55)
T ss_dssp CSSSCSCTTSCC
T ss_pred CCeecCCCCCCh
Confidence 345566666665
No 248
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=21.01 E-value=12 Score=25.62 Aligned_cols=12 Identities=50% Similarity=1.074 Sum_probs=9.9
Q ss_pred CCCCCCCCCccc
Q psy17880 62 GTKCAQCGEYVE 73 (120)
Q Consensus 62 ~~~C~~C~~~i~ 73 (120)
+..|..|+.+|.
T Consensus 235 g~pC~~CG~~I~ 246 (266)
T 1ee8_A 235 GLPCPACGRPVE 246 (266)
T ss_dssp TSBCTTTCCBCE
T ss_pred CCCCCCCCCEee
Confidence 467999999985
No 249
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.94 E-value=40 Score=14.87 Aligned_cols=14 Identities=14% Similarity=0.531 Sum_probs=10.5
Q ss_pred ccccccCCCcCCCC
Q psy17880 88 CFTCARCRFSKKRE 101 (120)
Q Consensus 88 Cf~C~~C~~~l~~~ 101 (120)
=|.|..|++.+...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (44)
T 2en7_A 12 PYVCNECGKAFRSK 25 (44)
T ss_dssp SSCCTTTCCCCSSH
T ss_pred CeECCCCCCccCCH
Confidence 37888998887654
No 250
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.88 E-value=31 Score=14.57 Aligned_cols=14 Identities=21% Similarity=0.652 Sum_probs=10.0
Q ss_pred ccccccCCCcCCCC
Q psy17880 88 CFTCARCRFSKKRE 101 (120)
Q Consensus 88 Cf~C~~C~~~l~~~ 101 (120)
-|.|..|++.+...
T Consensus 9 ~~~C~~C~k~f~~~ 22 (37)
T 2elp_A 9 AMKCPYCDFYFMKN 22 (37)
T ss_dssp CEECSSSSCEECSS
T ss_pred CeECCCCChhhccC
Confidence 47788888877543
No 251
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.57 E-value=42 Score=14.67 Aligned_cols=14 Identities=14% Similarity=0.394 Sum_probs=10.4
Q ss_pred ccccccCCCcCCCC
Q psy17880 88 CFTCARCRFSKKRE 101 (120)
Q Consensus 88 Cf~C~~C~~~l~~~ 101 (120)
=|.|..|++.+...
T Consensus 11 ~~~C~~C~k~f~~~ 24 (42)
T 2eos_A 11 PYPCEICGTRFRHL 24 (42)
T ss_dssp CBCCSSSCCCBSSH
T ss_pred CEECCCCCCccCCH
Confidence 37788898887654
No 252
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=20.48 E-value=28 Score=14.35 Aligned_cols=11 Identities=27% Similarity=0.642 Sum_probs=8.0
Q ss_pred cccccCCCcCC
Q psy17880 89 FTCARCRFSKK 99 (120)
Q Consensus 89 f~C~~C~~~l~ 99 (120)
|.|..|++.+.
T Consensus 3 ~~C~~C~k~f~ 13 (32)
T 2kfq_A 3 FACPACPKRFM 13 (32)
T ss_dssp SSSSSSCTTHH
T ss_pred CCCCCCCcccC
Confidence 67888887664
No 253
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.48 E-value=44 Score=14.99 Aligned_cols=14 Identities=14% Similarity=0.456 Sum_probs=10.6
Q ss_pred ccccccCCCcCCCC
Q psy17880 88 CFTCARCRFSKKRE 101 (120)
Q Consensus 88 Cf~C~~C~~~l~~~ 101 (120)
=|.|..|++.+...
T Consensus 12 ~~~C~~C~k~F~~~ 25 (46)
T 2enf_A 12 PYKCNECGKVFTQN 25 (46)
T ss_dssp SCBCSSSCCBCSSH
T ss_pred CeECCCCCcccCCH
Confidence 37899999887654
No 254
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.42 E-value=24 Score=15.16 Aligned_cols=12 Identities=25% Similarity=0.957 Sum_probs=8.8
Q ss_pred cccccCCCcCCC
Q psy17880 89 FTCARCRFSKKR 100 (120)
Q Consensus 89 f~C~~C~~~l~~ 100 (120)
|.|..|++.+..
T Consensus 10 ~~C~~C~k~f~~ 21 (37)
T 2elm_A 10 YYCSQCHYSSIT 21 (37)
T ss_dssp EECSSSSCEEEC
T ss_pred eECCCCCcccCC
Confidence 678888887644
No 255
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.36 E-value=42 Score=14.60 Aligned_cols=14 Identities=14% Similarity=0.532 Sum_probs=10.3
Q ss_pred ccccccCCCcCCCC
Q psy17880 88 CFTCARCRFSKKRE 101 (120)
Q Consensus 88 Cf~C~~C~~~l~~~ 101 (120)
=|.|..|++.+...
T Consensus 11 ~~~C~~C~k~f~~~ 24 (42)
T 2ytb_A 11 PYRCDQCGKAFSQK 24 (42)
T ss_dssp SBCCTTTTCCBSSH
T ss_pred CeeCCCccchhCCH
Confidence 37788898887653
No 256
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=20.34 E-value=43 Score=18.16 Aligned_cols=10 Identities=40% Similarity=0.723 Sum_probs=4.9
Q ss_pred cccccccccc
Q psy17880 4 AYCTSCKKKC 13 (120)
Q Consensus 4 ~~C~~C~~~i 13 (120)
..|..|+++|
T Consensus 5 VRCFTCGkvi 14 (70)
T 1twf_J 5 VRCFSCGKVV 14 (70)
T ss_dssp SBCTTTCCBC
T ss_pred eecCCCCCCh
Confidence 3455555544
No 257
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.26 E-value=44 Score=15.00 Aligned_cols=14 Identities=21% Similarity=0.503 Sum_probs=10.7
Q ss_pred ccccccCCCcCCCC
Q psy17880 88 CFTCARCRFSKKRE 101 (120)
Q Consensus 88 Cf~C~~C~~~l~~~ 101 (120)
-|.|..|++.+...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2emg_A 12 PFICSECGKVFTHK 25 (46)
T ss_dssp SCBCTTTCCBCSSH
T ss_pred CEECCccCcccCCH
Confidence 47899999888654
No 258
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=20.19 E-value=56 Score=18.23 Aligned_cols=33 Identities=24% Similarity=0.556 Sum_probs=18.7
Q ss_pred CCCCCCCcccCcEEEEeCccccccccccccCCCcCCCCcee
Q psy17880 64 KCAQCGEYVEGEVVTALGKTYHQKCFTCARCRFSKKREIYN 104 (120)
Q Consensus 64 ~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~ 104 (120)
.|..|++.. +....-..| .|..|+..+.++.+.
T Consensus 29 ~Cp~CG~~~---v~r~atGiW-----~C~~Cg~~~aggay~ 61 (83)
T 1vq8_Z 29 ACPNCGEDR---VDRQGTGIW-----QCSYCDYKFTGGSYK 61 (83)
T ss_dssp ECSSSCCEE---EEEEETTEE-----EETTTCCEEECCSSS
T ss_pred cCCCCCCcc---eeccCCCeE-----ECCCCCCEecCCEec
Confidence 677777654 222223333 477787777666543
No 259
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=20.16 E-value=26 Score=16.68 Aligned_cols=13 Identities=15% Similarity=0.294 Sum_probs=9.6
Q ss_pred cccccCCCcCCCC
Q psy17880 89 FTCARCRFSKKRE 101 (120)
Q Consensus 89 f~C~~C~~~l~~~ 101 (120)
+.|.+|++.|...
T Consensus 10 ~~C~~C~~~i~~~ 22 (39)
T 2i5o_A 10 VPCEKCGSLVPVW 22 (39)
T ss_dssp EECTTTCCEEEGG
T ss_pred cccccccCcCCcc
Confidence 4688888887654
No 260
>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.14 E-value=72 Score=17.00 Aligned_cols=9 Identities=33% Similarity=0.944 Sum_probs=5.1
Q ss_pred CCCCCCCcc
Q psy17880 64 KCAQCGEYV 72 (120)
Q Consensus 64 ~C~~C~~~i 72 (120)
.|..|+.+|
T Consensus 6 ~C~Fcg~~I 14 (66)
T 3j21_V 6 VCSYCGKPF 14 (66)
T ss_dssp BCTTTCSBC
T ss_pred EecCcCCcc
Confidence 455555555
No 261
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli}
Probab=20.13 E-value=21 Score=21.12 Aligned_cols=29 Identities=21% Similarity=0.316 Sum_probs=18.0
Q ss_pred ccccccccccCCCCeeecCCeeccHhHHH
Q psy17880 30 FQCSVCKNSLAQGGYFNKDGAYYCTSDYQ 58 (120)
Q Consensus 30 f~C~~C~~~l~~~~~~~~~~~~~C~~c~~ 58 (120)
-.|..|+.+|+.........-.+|..|-.
T Consensus 57 G~C~~CGe~Ip~~RL~A~P~a~~Cv~Cq~ 85 (108)
T 2kgo_A 57 DECEECGAPIPQARREAIPGVRLCIHCQQ 85 (108)
T ss_dssp SBCTTTCCBCCHHHHHHSTTCCSCHHHHH
T ss_pred ceecccCCcccHHHHhcCCCccccHHHHH
Confidence 45777777776554444555566766654
No 262
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=20.11 E-value=52 Score=17.48 Aligned_cols=9 Identities=56% Similarity=1.099 Sum_probs=4.9
Q ss_pred Ccccccccc
Q psy17880 22 DKYFHITCF 30 (120)
Q Consensus 22 ~~~~H~~Cf 30 (120)
++.||..|+
T Consensus 40 ~~~yH~~Cl 48 (70)
T 3asl_A 40 DMAFHIYCL 48 (70)
T ss_dssp CCEEEGGGS
T ss_pred CCceecccC
Confidence 345666654
No 263
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=20.11 E-value=65 Score=15.80 Aligned_cols=11 Identities=27% Similarity=0.543 Sum_probs=7.3
Q ss_pred CCeeccHhHHH
Q psy17880 48 DGAYYCTSDYQ 58 (120)
Q Consensus 48 ~~~~~C~~c~~ 58 (120)
+|..+|..|-.
T Consensus 23 ~G~~LCNaCGl 33 (46)
T 1gnf_A 23 TGHYLCNACGL 33 (46)
T ss_dssp TCCCBCSHHHH
T ss_pred CCCccchHHHH
Confidence 45677877754
Done!