RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17880
(120 letters)
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1,
LIM domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Length = 101
Score = 92.9 bits (231), Expect = 4e-26
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 6 CTSCKKKCSGE--VLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGT 63
C C+K + + +++++H TCF+C+ C + LA + KD C ++
Sbjct: 8 CVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSP 67
Query: 64 KCAQCGEYVEG--EVVTALGKTYHQKCFTCARC 94
KC C + + + V G +H+ CF+
Sbjct: 68 KCKGCFKAIVAGDQNVEYKGTVWHKDCFSGPSS 100
Score = 41.6 bits (98), Expect = 4e-06
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 60 KFGTKCAQCGEYVEGE--VVTALGKTYHQKCFTCARCRFSKKREIYNWLGGRAY 111
+ C +C + + + V + +H CF CA+C E + +
Sbjct: 3 SGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKIL 56
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene,
transcription, developmental protein; 2.40A {Homo
sapiens} PDB: 2xjz_A
Length = 131
Score = 86.3 bits (214), Expect = 4e-23
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
Query: 6 CTSCKKKCSGE-VLRVQDKYFHITCFQCSVCKNSLAQGG--YFNKDGAYYCTSDYQKKFG 62
C C++ L+ D+Y+H C C +C L + G + K G C DY + FG
Sbjct: 5 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 64
Query: 63 TK--CAQCGEYVEGE--VVTALGKTYHQKCFTCARCR 95
CA C + + + K YH +CF CA C+
Sbjct: 65 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQ 101
Score = 46.7 bits (111), Expect = 6e-08
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 2 IKAYCTSCKKKCSGE--VLRVQDKYFHITCFQCSVCKNSLAQG-GYFNKDGAYYCTSDYQ 58
C SC K+ +RV+DK +H+ CF+C+ C+ G Y + C D
Sbjct: 65 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIY 124
Query: 59 KKFGTK 64
+
Sbjct: 125 EWTKIN 130
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3;
intramolecular (fusion) protein-protein complex, protein
binding/transcription complex; NMR {Mus musculus}
Length = 182
Score = 86.9 bits (215), Expect = 6e-23
Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 6/111 (5%)
Query: 6 CTSCKKK-CSGEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTK 64
C C + +L+ D+++H C +CS C LA F++ + YC D+ K+FGTK
Sbjct: 63 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLA-ERCFSRGESVYCKDDFFKRFGTK 121
Query: 65 CAQCGEYVE--GEVVTALGKTYHQKCFTCARC--RFSKKREIYNWLGGRAY 111
CA C + V A YH CF C C + + E Y R
Sbjct: 122 CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLV 172
Score = 46.8 bits (111), Expect = 1e-07
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 6 CTSCKKK--CSGEVLRVQDKYFHITCFQCSVCKNSLAQG--GYFNKDGAYYCTSDYQKK 60
C +C+ + V R QD +H+ CF C VCK LA G Y +D C +DY+
Sbjct: 122 CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETA 180
Score = 46.4 bits (110), Expect = 2e-07
Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 8/84 (9%)
Query: 28 TCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTKCAQCGEYVEGE-VVTALGKTYHQ 86
A G ++ G+ CA C +++ ++ AL + +H
Sbjct: 26 RLITRLENTQFDAANGIDDEGGSGGHMGSGGTPEIPMCAGCDQHILDRFILKALDRHWHS 85
Query: 87 KCFTCARCR-------FSKKREIY 103
KC C+ C FS+ +Y
Sbjct: 86 KCLKCSDCHVPLAERCFSRGESVY 109
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein
ISL-1; protein-protein complex, LIM domain, Zn finger,
activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Length = 169
Score = 85.3 bits (211), Expect = 2e-22
Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Query: 6 CTSCKKKCSGE-VLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTK 64
C C + +L+ D+++H C +CS C LA F++ + YC D+ K+FGTK
Sbjct: 9 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLA-ERCFSRGESVYCKDDFFKRFGTK 67
Query: 65 CAQCGE--YVEGEVVTALGKTYHQKCFTCARCR--FSKKREIYNWLGGRAY 111
CA C V A YH CF C C+ + E Y R
Sbjct: 68 CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLV 118
Score = 77.2 bits (190), Expect = 3e-19
Identities = 25/99 (25%), Positives = 35/99 (35%), Gaps = 4/99 (4%)
Query: 6 CTSCKKK--CSGEVLRVQDKYFHITCFQCSVCKNSLAQG--GYFNKDGAYYCTSDYQKKF 61
C +C+ + V R QD +H+ CF C VCK LA G Y +D C +DY+
Sbjct: 68 CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAK 127
Query: 62 GTKCAQCGEYVEGEVVTALGKTYHQKCFTCARCRFSKKR 100
G G + A H +
Sbjct: 128 QGGSGGSGGSGGGTPMVAASPERHDGGLQANPVEVQSYQ 166
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding
protein 1; B-tandem zipper, protein binding; 1.30A {Mus
musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB:
2dfy_X 2xjz_I 2xjy_B
Length = 188
Score = 82.8 bits (204), Expect = 3e-21
Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 6 CTSCKKKCSGE-VLRVQDKYFHITCFQCSVCKNSLAQGG--YFNKDGAYYCTSDYQKKFG 62
C C K + +L D Y+H C +CS C+ L G + K G C +DY + FG
Sbjct: 8 CAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 67
Query: 63 --TKCAQCGEYVEGE--VVTALGKTYHQKCFTCARCR 95
C+ CG+ + V+ A G YH KCFTC+ CR
Sbjct: 68 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCR 104
Score = 53.9 bits (129), Expect = 3e-10
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Query: 2 IKAYCTSCKKKCSGE--VLRVQDKYFHITCFQCSVCKNSLAQG-GYFNKDGAYYCTSDYQ 58
C++C + V+R Q +H+ CF CS C+N L G + +G+ +C D
Sbjct: 68 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRP 127
Query: 59 KKFGTKCAQCGE 70
G
Sbjct: 128 TALINGHLNSGG 139
Score = 36.1 bits (83), Expect = 0.001
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 61 FGTKCAQCGEYVEGE-VVTALGKTYHQKCFTCARCR 95
+CA CG + ++ A+ +H +C C+ C+
Sbjct: 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQ 39
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion,
acrosom; 2.62A {Homo sapiens}
Length = 126
Score = 79.4 bits (196), Expect = 2e-20
Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 5/111 (4%)
Query: 6 CTSCKKK-CSGEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTK 64
C C + S E + +++ +H+ F C C + LA Y + C Y K
Sbjct: 6 CAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVV 65
Query: 65 CAQCGEYVEGE--VVTALGKTYH--QKCFTCARCRFSKKREIYNWLGGRAY 111
C C ++ E VT ++H +CF C+ C + + + G +
Sbjct: 66 CQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVF 116
Score = 45.9 bits (109), Expect = 1e-07
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 5 YCTSCKKKCSGEVLRV--QDKYFHIT--CFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKK 60
C C EV RV + +H + CF CS C L + +G +C+ + +K+
Sbjct: 65 VCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKR 124
Query: 61 F 61
Sbjct: 125 M 125
Score = 37.8 bits (88), Expect = 1e-04
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 64 KCAQCGEYV-EGEVVTALGKTYHQKCFTCARCRFSKKREIYNWLGGRAY 111
+CA C E + E A + +H K F C C EIY + +
Sbjct: 5 RCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPV 53
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM
domain 3, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: g.39.1.3 g.39.1.3
Length = 89
Score = 77.1 bits (190), Expect = 4e-20
Identities = 20/61 (32%), Positives = 30/61 (49%)
Query: 6 CTSCKKKCSGEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTKC 65
C C G V++ +DKY H CF C+ C +L Q GYF +G YC + + +
Sbjct: 28 CDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPS 87
Query: 66 A 66
+
Sbjct: 88 S 88
Score = 49.4 bits (118), Expect = 3e-09
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 64 KCAQCGEYVEGEVVTALGKTYHQKCFTCARCRFSKKREIYNWLGGRAY 111
C +CG + G VV A K H +CF CA C + K++ Y ++ G Y
Sbjct: 27 LCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELY 74
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1,
LIM domain protein CLP-36, contractIle protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 79
Score = 72.5 bits (178), Expect = 2e-18
Identities = 14/61 (22%), Positives = 29/61 (47%)
Query: 6 CTSCKKKCSGEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTKC 65
C C G ++++D++ H C+ C+ C +L Q G+F + YC +++
Sbjct: 18 CDKCGTGIVGVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPS 77
Query: 66 A 66
+
Sbjct: 78 S 78
Score = 47.1 bits (112), Expect = 2e-08
Identities = 12/57 (21%), Positives = 25/57 (43%)
Query: 55 SDYQKKFGTKCAQCGEYVEGEVVTALGKTYHQKCFTCARCRFSKKREIYNWLGGRAY 111
S + C +CG + G V + H +C+ C C + K++ + ++ + Y
Sbjct: 8 SIGNAQKLPMCDKCGTGIVGVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIY 64
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 90
Score = 69.8 bits (171), Expect = 3e-17
Identities = 20/61 (32%), Positives = 30/61 (49%)
Query: 6 CTSCKKKCSGEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTKC 65
C C + G L K +H F C+ CKN++A G+ + GA YC Y+K F +
Sbjct: 28 CAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGP 87
Query: 66 A 66
+
Sbjct: 88 S 88
Score = 55.5 bits (134), Expect = 1e-11
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 40 AQGGYFNKDGAYYCTSDY-QKKFGTKCAQCGEYVEGEVVTALGKTYHQKCFTCARCR 95
+ G ++D K CA C + + G + ALGK++H + F CA C+
Sbjct: 2 SSGSSGDQDTLVQRAEHIPAGKRTPMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCK 58
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 80
Score = 63.9 bits (156), Expect = 4e-15
Identities = 17/61 (27%), Positives = 25/61 (40%)
Query: 6 CTSCKKKCSGEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTKC 65
C C + L D +H CF C C S + G +F DG +C Y + G+
Sbjct: 18 CGGCNRPVLENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGSGP 77
Query: 66 A 66
+
Sbjct: 78 S 78
Score = 60.0 bits (146), Expect = 2e-13
Identities = 16/63 (25%), Positives = 25/63 (39%)
Query: 49 GAYYCTSDYQKKFGTKCAQCGEYVEGEVVTALGKTYHQKCFTCARCRFSKKREIYNWLGG 108
+ D+ F KC C V ++A+ +H +CF C C S + L G
Sbjct: 2 SSGSSGKDFLAMFSPKCGGCNRPVLENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDG 61
Query: 109 RAY 111
R +
Sbjct: 62 RPF 64
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3,
LIM-domain protein DRAL, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 70
Score = 62.7 bits (153), Expect = 1e-14
Identities = 13/61 (21%), Positives = 29/61 (47%)
Query: 6 CTSCKKKCSGEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTKC 65
C CKK + + +++ +H CF C+ C+ L+ + +D YC + + + +
Sbjct: 8 CVQCKKPITTGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGP 67
Query: 66 A 66
+
Sbjct: 68 S 68
Score = 45.8 bits (109), Expect = 4e-08
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 59 KKFGTKCAQCGEYVEGEVVTALGKTYHQKCFTCARCR 95
+ C QC + + VT + +H++CF C CR
Sbjct: 2 SSGSSGCVQCKKPITTGGVTYREQPWHKECFVCTACR 38
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains
protein 1, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 69
Score = 62.4 bits (152), Expect = 1e-14
Identities = 16/61 (26%), Positives = 24/61 (39%)
Query: 6 CTSCKKKCSGEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTKC 65
C C K + + QD+ +H CF C C LA + + YYC Y+
Sbjct: 8 CVKCNKAITSGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPS 67
Query: 66 A 66
+
Sbjct: 68 S 68
Score = 45.1 bits (107), Expect = 8e-08
Identities = 9/53 (16%), Positives = 20/53 (37%)
Query: 59 KKFGTKCAQCGEYVEGEVVTALGKTYHQKCFTCARCRFSKKREIYNWLGGRAY 111
+ C +C + + +T + +H CF C C + + + + Y
Sbjct: 2 SSGSSGCVKCNKAITSGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYY 54
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 70
Score = 62.1 bits (151), Expect = 2e-14
Identities = 14/61 (22%), Positives = 29/61 (47%)
Query: 6 CTSCKKKCSGEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTKC 65
C C + G V++ + +H CF+C +C+ LA G+ G + C + ++ +
Sbjct: 8 CHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASGP 67
Query: 66 A 66
+
Sbjct: 68 S 68
Score = 45.5 bits (108), Expect = 6e-08
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 64 KCAQCGEYVEGEVVTALGKTYHQKCFTCARCR 95
C QCGE++ G V+ A+ ++H +CF C C+
Sbjct: 7 GCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQ 38
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain,
OPA-interacting protein 1, zyxin related protein 1
(ZRP-1), structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 81
Score = 61.6 bits (150), Expect = 4e-14
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 6 CTSCKKKCSGEVLRVQDKYFHITCFQCSVCKNSLAQGG-YFNKDGAYYCTSDYQKKFGTK 64
C +C + +LR K +H CF C VC L + +C D+ +KF +
Sbjct: 18 CATCSQPILDRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASG 77
Query: 65 CA 66
+
Sbjct: 78 PS 79
Score = 47.7 bits (114), Expect = 1e-08
Identities = 14/44 (31%), Positives = 19/44 (43%)
Query: 52 YCTSDYQKKFGTKCAQCGEYVEGEVVTALGKTYHQKCFTCARCR 95
KCA C + + ++ A+GK YH CFTC C
Sbjct: 5 SSGEGCYVATLEKCATCSQPILDRILRAMGKAYHPGCFTCVVCH 48
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 80
Score = 61.6 bits (150), Expect = 4e-14
Identities = 14/61 (22%), Positives = 29/61 (47%)
Query: 6 CTSCKKKCSGEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTKC 65
C C K + + +D+ +H C C+ C+ LA + ++D YC + + + F +
Sbjct: 18 CARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFASGP 77
Query: 66 A 66
+
Sbjct: 78 S 78
Score = 55.0 bits (133), Expect = 1e-11
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 49 GAYYCTSDYQKKFGTKCAQCGEYVEGEVVTALGKTYHQKCFTCARCR 95
+ Y+ KF +CA+C + + VT + +H++C C C+
Sbjct: 2 SSGSSGPCYENKFAPRCARCSKTLTQGGVTYRDQPWHRECLVCTGCQ 48
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 80
Score = 60.5 bits (147), Expect = 9e-14
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 6 CTSCKKK-CSGEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTK 64
C CK++ G+ L DK +H++CF+C C L G Y +KDG YC SDY +FG+
Sbjct: 18 CAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILT-GEYISKDGVPYCESDYHAQFGSG 76
Query: 65 CA 66
+
Sbjct: 77 PS 78
Score = 39.7 bits (93), Expect = 1e-05
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 54 TSDYQKKFGTKCAQCGEYV-EGEVVTALGKTYHQKCFTCARCR 95
+ + + CA C E + G+ + AL K +H CF C C
Sbjct: 7 GKPIKIRGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCS 49
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken
structural genomics/proteomics initiative, RSGI,
NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 72
Score = 60.5 bits (147), Expect = 1e-13
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 6 CTSCKK--KCSGEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGT 63
C++C + L + +H CF CS C+ L + GA+YC Y+ KF +
Sbjct: 8 CSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFAS 67
Query: 64 KCA 66
+
Sbjct: 68 GPS 70
Score = 40.8 bits (96), Expect = 3e-06
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 60 KFGTKCAQCGEYVE--GEVVTALGKTYHQKCFTCARCR 95
+ C+ CGE V + G+T+H+ CF C+ C
Sbjct: 3 SGSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCE 40
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain,
ablim2, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 81
Score = 59.8 bits (145), Expect = 2e-13
Identities = 25/40 (62%), Positives = 32/40 (80%)
Query: 56 DYQKKFGTKCAQCGEYVEGEVVTALGKTYHQKCFTCARCR 95
DYQ+ +GT+C C +++EGEVV+ALGKTYH CF CA CR
Sbjct: 9 DYQRLYGTRCFSCDQFIEGEVVSALGKTYHPDCFVCAVCR 48
Score = 46.7 bits (111), Expect = 2e-08
Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 6 CTSCKKKCSGEVLRVQDKYFHITCFQCSVCKNSLAQGGYF-NKDGAYYCTSDYQKKFG 62
C SC + GEV+ K +H CF C+VC+ G C
Sbjct: 18 CFSCDQFIEGEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSV 75
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 81
Score = 59.8 bits (145), Expect = 2e-13
Identities = 16/65 (24%), Positives = 21/65 (32%), Gaps = 2/65 (3%)
Query: 49 GAYYCTSDYQKKFGTKCAQCGEYVEGEVVTALGKTYHQKCFTCARCR--FSKKREIYNWL 106
+ DY KFG C C + G + A YH +CF C C+
Sbjct: 2 SSGSSGKDYWGKFGEFCHGCSLLMTGPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQ 61
Query: 107 GGRAY 111
Y
Sbjct: 62 HATLY 66
Score = 51.7 bits (124), Expect = 3e-10
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Query: 6 CTSCKKKCSGEVLRVQDKYFHITCFQCSVCKNSLAQGG--YFNKDGAYYCTSDYQKKFGT 63
C C +G + + +H CF C CK + G + YC + +
Sbjct: 18 CHGCSLLMTGPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSG 77
Query: 64 KCA 66
+
Sbjct: 78 PSS 80
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Length = 66
Score = 59.2 bits (144), Expect = 2e-13
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 6 CTSCKKKCSGEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGT 63
C +C++ G V+ K +H+ F C+ C+ ++ + G YC + Y + FG
Sbjct: 8 CGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGD 65
Score = 48.1 bits (115), Expect = 6e-09
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 60 KFGTKCAQCGEYVEGEVVTALGKTYHQKCFTCARCR 95
C C +EG VV A+GK +H + F CA+C
Sbjct: 3 MGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCE 38
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM-
protein 2, SLIM 2, FHL3, SLIM2, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 82
Score = 59.0 bits (143), Expect = 3e-13
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 5 YCTSCKKKCSGEV--LRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFG 62
C C++ + L +D++FH CF+C C+ SLA + +D C Y F
Sbjct: 17 TCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFS 76
Query: 63 TKCA 66
+ +
Sbjct: 77 SGPS 80
Score = 44.0 bits (104), Expect = 3e-07
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 52 YCTSDYQKKFGTKCAQCGEYVEGEV--VTALGKTYHQKCFTCARCRFSKKREIYNWLGGR 109
Y F CA+C + + + + + +H+ CF C RC+ S E +
Sbjct: 5 SSGPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSE 64
Query: 110 AY 111
Sbjct: 65 LL 66
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding
protein, zinc finger; NMR {Coturnix japonica} SCOP:
g.39.1.3 g.39.1.3 PDB: 2o10_A
Length = 81
Score = 59.0 bits (143), Expect = 4e-13
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 6 CTSCKKKCS-GEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTK 64
C +C + E ++ + FH CF C VC+ +L D YC S Y KK+G K
Sbjct: 10 CGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPK 69
Query: 65 CAQCGE 70
G+
Sbjct: 70 GYGYGQ 75
Score = 37.4 bits (87), Expect = 9e-05
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 62 GTKCAQCGEYV-EGEVVTALGKTYHQKCFTCARCRFSKKREIYNWLGGRAY 111
G KC CG V E V G+++H+ CF C CR + Y
Sbjct: 7 GNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVY 57
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 58.2 bits (141), Expect = 6e-13
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 6 CTSCKK--KCSGEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGT 63
C CKK + + +H TCF C C+ + + KD +C Y+K+ +
Sbjct: 8 CQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHAS 67
Query: 64 KCA 66
+
Sbjct: 68 GPS 70
Score = 40.1 bits (94), Expect = 7e-06
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 60 KFGTKCAQCGEYVE--GEVVTALGKTYHQKCFTCARCR 95
+ C +C + + + G ++H+ CF C RC+
Sbjct: 3 SGSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQ 40
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 91
Score = 57.6 bits (139), Expect = 2e-12
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 6 CTSCKKKCS-GEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTK 64
C C+K E L + FHI+CF+CS C N L+ G Y + G YC + + F +K
Sbjct: 18 CVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSK 77
Query: 65 CAQCG 69
Sbjct: 78 GNYDE 82
Score = 36.7 bits (85), Expect = 2e-04
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 64 KCAQCGEYV-EGEVVTALGKTYHQKCFTCARCR 95
C +C + V E + A + +H CF C+ C
Sbjct: 17 TCVECQKTVYPMERLLANQQVFHISCFRCSYCN 49
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4;
protein-protein interaction, LIM-interaction DOM LMO4,
RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo
sapiens}
Length = 123
Score = 58.2 bits (140), Expect = 2e-12
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 6 CTSCKKK-CSGEVLRVQDKYFHITCFQCSVCKNSLAQGG--YFNKDGAYYCTSDYQKKFG 62
C C K +L D Y+H C +CS C+ L G + K G C +DY + FG
Sbjct: 64 CAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123
Score = 37.8 bits (87), Expect = 1e-04
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 52 YCTSDYQKKFGTKCAQCGEYV-EGEVVTALGKTYHQKCFTCARCR 95
+CA CG + + ++ A+ +H +C C+ C+
Sbjct: 51 GGHMGSGGLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQ 95
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1;
LMO2(LIM2)-LDB1(LID), chimera, fusion protein,
oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Length = 123
Score = 57.4 bits (138), Expect = 6e-12
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Query: 3 KAYCTSCKKKCSGE--VLRVQDKYFHITCFQCSVCKNSLAQG-GYFNKDGAYYCTSDYQK 59
C SC K+ +RV+DK +H+ CF+C+ C+ + G Y + C D +
Sbjct: 8 DGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYE 67
Query: 60 KFGTKCAQCGEYVEGEVVTALGK 82
G G V +G+
Sbjct: 68 WTKINGGSGGSGGSGGDVMVVGE 90
Score = 44.7 bits (105), Expect = 3e-07
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 57 YQKKFGTK--CAQCGEYVEGE--VVTALGKTYHQKCFTCARCR 95
Y + FG CA C + + + K YH +CF CA C+
Sbjct: 1 YLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQ 43
>1x61_A Thyroid receptor interacting protein 6; LIM domain,
OPA-interacting protein 1, zyxin related protein 1
(ZRP-1), structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 72
Score = 55.5 bits (134), Expect = 8e-12
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 6 CTSCKKKCSGE--VLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGT 63
C C + G+ + D+ FH+ CF CS C+ L ++ + YC Y
Sbjct: 8 CGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATL-E 66
Query: 64 KCAQCG 69
G
Sbjct: 67 SGPSSG 72
Score = 38.2 bits (89), Expect = 3e-05
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 64 KCAQCGEYVEGE--VVTALGKTYHQKCFTCARCR 95
C CGE V G+ V AL + +H CF C+ CR
Sbjct: 7 GCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCR 40
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle;
NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Length = 192
Score = 57.3 bits (138), Expect = 2e-11
Identities = 34/140 (24%), Positives = 46/140 (32%), Gaps = 50/140 (35%)
Query: 6 CTSCKKKCS-GEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTK 64
C C+K E ++ + FH +CF C VCK +L YC S Y KK+G K
Sbjct: 10 CGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPK 69
Query: 65 CAQ------------------------------------------------CGEYV-EGE 75
CG+ V E
Sbjct: 70 GKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAE 129
Query: 76 VVTALGKTYHQKCFTCARCR 95
V GK++H+ CF CA+C
Sbjct: 130 KVIGAGKSWHKSCFRCAKCG 149
Score = 56.2 bits (135), Expect = 4e-11
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 5 YCTSCKKK-CSGEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGT 63
C C + + E + K +H +CF+C+ C SL +KDG YC Y K FG
Sbjct: 117 GCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGP 176
Query: 64 KCAQCGE 70
K G+
Sbjct: 177 KGFGFGQ 183
Score = 40.4 bits (94), Expect = 3e-05
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 62 GTKCAQCGEYVE-GEVVTALGKTYHQKCFTCARCRFSKKREIYNWLGGRAY 111
G KC C + V E V G ++H+ CF C C+ + G Y
Sbjct: 7 GKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIY 57
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1;
LIM-interaction-domain (LID), metal binding protein; NMR
{Mus musculus} SCOP: g.39.1.3 g.39.1.3
Length = 114
Score = 55.1 bits (132), Expect = 3e-11
Identities = 17/97 (17%), Positives = 29/97 (29%), Gaps = 7/97 (7%)
Query: 6 CTSCKKK-CSGEVLRVQDKYFHITCFQCSVCKNSLAQGG--YFNKDGAYYCTSDYQKKFG 62
C C++ L+ D+Y+H C C +C L + G + K G C DY + G
Sbjct: 6 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGG 65
Query: 63 TKCAQCGEYVEGE----VVTALGKTYHQKCFTCARCR 95
+ + +
Sbjct: 66 SGGHMGSGGDVMVVGEPTLMGGEFGDEDERLITRLEN 102
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM
domains protein 1, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 54.3 bits (131), Expect = 3e-11
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 6 CTSCKK--KCSGEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGT 63
C C K + + + +H CF CS CK + G +F K +YC + ++ KF +
Sbjct: 18 CKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFAS 77
Query: 64 KCA 66
+
Sbjct: 78 GPS 80
Score = 50.1 bits (120), Expect = 1e-09
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 49 GAYYCTSDYQKKFGTKCAQCGEYVEG--EVVTALGKTYHQKCFTCARCR 95
+ ++ KC C + + + V G +H+ CFTC+ C+
Sbjct: 2 SSGSSGKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCK 50
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 53.3 bits (128), Expect = 5e-11
Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 4/66 (6%)
Query: 5 YCTSCKKKCSG----EVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKK 60
C C SG + + +++ +H CF C C SL G+ + C +
Sbjct: 7 GCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI 66
Query: 61 FGTKCA 66
G
Sbjct: 67 SGPSSG 72
Score = 38.3 bits (89), Expect = 3e-05
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 60 KFGTKCAQCGEYVEG----EVVTALGKTYHQKCFTCARCR 95
+ CA C + G + ++ + +H CF C +C
Sbjct: 3 SGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCS 42
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the
N-terminal LIM domain of LMO4...; fusion protein, LMO
proteins, metal binding protein; NMR {Mus musculus}
SCOP: g.39.1.3 g.39.1.3
Length = 122
Score = 53.4 bits (128), Expect = 1e-10
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Query: 6 CTSCKKK-CSGEVLRVQDKYFHITCFQCSVCKNSLAQGG--YFNKDGAYYCTSDYQKKFG 62
C C K +L D Y+H C +CS C+ L G + K G C +DY + FG
Sbjct: 8 CAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 67
Query: 63 TKCA--QCGEYVEGEVVTALGKTYH 85
A G G V +G+
Sbjct: 68 NSGAGGSGGHMGSGGDVMVVGEPTL 92
Score = 34.2 bits (78), Expect = 0.003
Identities = 9/35 (25%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 62 GTKCAQCGEYV-EGEVVTALGKTYHQKCFTCARCR 95
+CA CG + + ++ A+ +H +C C+ C+
Sbjct: 5 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQ 39
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein,
LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3
g.39.1.3
Length = 76
Score = 50.4 bits (121), Expect = 8e-10
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 6 CTSCKKK-CSGEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSD-YQKKFGT 63
C C K+ E + K +H C +C C +L GG+ +G YC Y FG
Sbjct: 3 CPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGP 62
Query: 64 KCAQCGE 70
K G
Sbjct: 63 KGFGRGG 69
Score = 37.3 bits (87), Expect = 8e-05
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 64 KCAQCGEYV-EGEVVTALGKTYHQKCFTCARCR 95
KC +C + V E VT+LGK +H+ C C +C
Sbjct: 2 KCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCG 34
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain,
AN actin- interacting protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 76
Score = 50.2 bits (120), Expect = 1e-09
Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 4/69 (5%)
Query: 5 YCTSCKKKCSG----EVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKK 60
C +C K SG + + QD +H CF C C SL G+ ++ +C
Sbjct: 7 GCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGM 66
Query: 61 FGTKCAQCG 69
Sbjct: 67 DTDISGPSS 75
Score = 39.5 bits (92), Expect = 2e-05
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 60 KFGTKCAQCGEYVEG----EVVTALGKTYHQKCFTCARCR 95
+ C C + + G + + +H +CF C +C
Sbjct: 3 SGSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCS 42
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 77
Score = 49.7 bits (119), Expect = 2e-09
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 1 MIKAYCTSCKKK--CSGEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQ 58
+ A C CK + +++ + +H CF C+ C +G ++ +G YC D+Q
Sbjct: 9 LASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQ 68
Query: 59 KKFGTKCA 66
F C
Sbjct: 69 MLFA-PCW 75
Score = 43.5 bits (103), Expect = 3e-07
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 53 CTSDYQKKFGTKCAQCGE--YVEGEVVTALGKTYHQKCFTCARCR 95
C +C ++V + G+ YH++CF CA+C
Sbjct: 2 SEFMANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCF 46
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1;
ILK, integrin-linked kinase, pinch, ankyrin repeat,
ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Length = 72
Score = 48.9 bits (117), Expect = 3e-09
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 6 CTSCKKK--CSGEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFG 62
C CK + +++ + +H CF C+ C +G ++ +G YC D+Q F
Sbjct: 14 CERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72
Score = 45.5 bits (108), Expect = 7e-08
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 56 DYQKKFGTKCAQCGE--YVEGEVVTALGKTYHQKCFTCARCR 95
+Q C +C ++V + G+ YH++CF CA+C
Sbjct: 5 YFQGSASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCF 46
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1,
skeletal muscle LIM- protein 1, SLIM 1, structural
genomics NPPSFA; NMR {Homo sapiens}
Length = 77
Score = 48.2 bits (115), Expect = 6e-09
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
Query: 52 YCTSDYQKKFGTKCAQCGEYVEG-----EVVTALGKTYHQKCFTCARCR 95
Y+ KCA C + G VV G+++H CF C +C
Sbjct: 5 SSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCS 53
Score = 41.7 bits (98), Expect = 2e-06
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 5 YCTSCKKKCSG-----EVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQK 59
C CK +G V+ + + +H CF C C +LA + YC +K
Sbjct: 17 KCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKK 76
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 76
Score = 47.0 bits (112), Expect = 2e-08
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 6 CTSCKKK-CSGEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSD-YQKKFGT 63
C C K E + K +H C +C C +L GG+ DG +C Y FG+
Sbjct: 12 CPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGS 71
Query: 64 KC 65
Sbjct: 72 GP 73
Score = 37.4 bits (87), Expect = 7e-05
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 64 KCAQCGEYV-EGEVVTALGKTYHQKCFTCARCR 95
KC +C + V E V++LGK +H+ C C RC
Sbjct: 11 KCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCS 43
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 73
Score = 43.9 bits (103), Expect = 3e-07
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 59 KKFGTKCAQCGEYVEGEVVTALGKTYHQKCFTCARCR 95
+ C C +Y+ G V+ A K YH C C RC
Sbjct: 2 SSGSSGCDSCEKYITGRVLEAGEKHYHPSCALCVRCG 38
Score = 38.9 bits (90), Expect = 2e-05
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 6 CTSCKKKCSGEVLRVQDKYFHITCFQCSVCKNSLAQG-GYFNKDGAYYCTSDYQKK 60
C SC+K +G VL +K++H +C C C A+G + + + + + Q
Sbjct: 8 CDSCEKYITGRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAA 63
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His
protein, LIM and senescent cell antigen-like domains 1,
structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 43.2 bits (102), Expect = 5e-07
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Query: 6 CTSCKKKCSGEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTKC 65
C C + L ++ +H F C+ C L G YC + K +
Sbjct: 18 CQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKEL-TADARELKGELYCLPCHDKMGVSGP 76
Query: 66 A 66
+
Sbjct: 77 S 77
Score = 40.2 bits (94), Expect = 9e-06
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 65 CAQCGEYVEGEVVTALGKTYHQKCFTCARCR 95
C +C ++ + + YH F CA C
Sbjct: 18 CQKCHAIIDEQPLIFKNDPYHPDHFNCANCG 48
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains;
zinc finger protein, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 43.4 bits (102), Expect = 6e-07
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 6 CTSCKKKC-SGEVLRVQDKYFHITCFQCSVCKNSLAQGGY--FNKDGAYYCTSDYQK 59
C C + E L V +FH +CF+C C+ +L GGY DG +YC +
Sbjct: 18 CALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQ 74
Score = 35.3 bits (81), Expect = 5e-04
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 62 GTKCAQCGEYV-EGEVVTALGKTYHQKCFTCARCR 95
G CA CGE++ E + G +H+ CF C C
Sbjct: 15 GDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCE 49
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM
domain EVH1 DO cell motility, phosphorylation,
cytoskeleton; 2.35A {Homo sapiens}
Length = 65
Score = 34.4 bits (79), Expect = 9e-04
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 5 YCTSCKKKCSGEVLRV--QDKYFHIT--CFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKK 60
C C EV RV + +H + CF CS C L + +G +C+ + +K+
Sbjct: 4 VCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKR 63
Query: 61 F 61
Sbjct: 64 M 64
Score = 24.8 bits (54), Expect = 3.7
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 61 FGTKCAQCGEYVEGEV--VTALGKTYH--QKCFTCARCRFS 97
C C ++ EV VT ++H +CF C+ C
Sbjct: 1 HAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKC 41
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin,
acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ;
1.85A {Saccharomyces cerevisiae}
Length = 354
Score = 29.8 bits (67), Expect = 0.15
Identities = 9/77 (11%), Positives = 21/77 (27%), Gaps = 4/77 (5%)
Query: 3 KAYCTSCKKKCSGEVLRVQDKYFHITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKF- 61
A C +C GE R+ +K ++ C C + + +
Sbjct: 161 TATCVTCHWNLPGE--RIFNKIRNLELPLCPYCYKKRREYFPEGYNNKVGVAASQGSMSE 218
Query: 62 -GTKCAQCGEYVEGEVV 77
++ ++
Sbjct: 219 RPPYILNSYGVLKPDIT 235
>1u60_A Probable glutaminase YBAS; structural genomics, APC5046, PSI,
protein structure initiat midwest center for structural
genomics, MCSG; 1.61A {Escherichia coli} SCOP: e.3.1.2
Length = 310
Score = 29.2 bits (65), Expect = 0.28
Identities = 10/73 (13%), Positives = 19/73 (26%), Gaps = 5/73 (6%)
Query: 4 AYCTSCKKKCSGEVLRVQDKYFH-----ITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQ 58
A+ + + D Y + + + +LA GG +D
Sbjct: 172 AWLLYSAGYLYCDAMEACDVYTRQCSTLLNTIELATLGATLAAGGVNPLTHKRVLQADNV 231
Query: 59 KKFGTKCAQCGEY 71
+ G Y
Sbjct: 232 PYILAEMMMEGLY 244
>3agd_A Salt-tolerant glutaminase; glutaminase super family, hydrolase;
2.20A {Micrococcus luteus} PDB: 3age_A* 3if5_A 3ih8_A
3ih9_A 3iha_A* 3ihb_A 2dfw_A
Length = 456
Score = 29.0 bits (64), Expect = 0.31
Identities = 12/73 (16%), Positives = 19/73 (26%), Gaps = 5/73 (6%)
Query: 4 AYCTSCKKKCSGEVLRVQDKYFH-----ITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQ 58
A+ + Y +T +V LA GG G S
Sbjct: 171 AHMLRSYGVLQDSAEEIVAGYVAQCAVLVTVKDLAVMGACLATGGIHPMTGERMLPSIVA 230
Query: 59 KKFGTKCAQCGEY 71
++ + G Y
Sbjct: 231 RRVVSVMTSSGMY 243
>3riq_A Tailspike protein; right handed beta-helix, endorhamnosidase,
lipopolysaccharide, viral protein; 1.50A {Siphovirus
9na}
Length = 543
Score = 27.0 bits (59), Expect = 1.7
Identities = 6/29 (20%), Positives = 7/29 (24%)
Query: 89 FTCARCRFSKKREIYNWLGGRAYENRLGG 117
C R W G +EN
Sbjct: 171 TLCNHILVESPRNFIAWESGITFENHHTT 199
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces
cerevisiae} SCOP: c.31.1.5
Length = 361
Score = 26.9 bits (59), Expect = 1.8
Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 3 KAYCTSCKKKCSGEVLRVQDKYFHI-TCFQCSVCKNSL 39
+C C K +V + + I +C VC +
Sbjct: 144 HCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGELV 181
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP
ribose,, gene regulation; HET: ALY OAD; 1.50A
{Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A*
1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Length = 289
Score = 25.8 bits (57), Expect = 3.3
Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 3 KAYCTSCKKKCSGEVLRVQDKYFHI-TCFQCSVCKNSL 39
+C C K +V + + I +C VC +
Sbjct: 136 HCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGELV 173
>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain
alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus
solfataricus}
Length = 344
Score = 25.7 bits (57), Expect = 4.0
Identities = 10/56 (17%), Positives = 17/56 (30%), Gaps = 15/56 (26%)
Query: 15 GEVLRVQ--DK---YFHITCFQCSVCKN-------SLAQGGYFNKDGAY--YCTSD 56
GE+ +V+ D Y C C+ + G +G + Y
Sbjct: 75 GELAKVKKGDNVVVYATWGDLTCRYCREGKFNICKNQIIPGQ-TTNGGFSEYMLVK 129
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent
deacetylase, sirtuin, substrate peptide comple
hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens}
PDB: 3gls_A 3glt_A* 3glu_A
Length = 285
Score = 25.8 bits (57), Expect = 4.4
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 3 KAYCTSCKKKCSGEVLRVQDKYFHITCFQCSVCKNSL 39
A CT C++ GE +R +C VC +
Sbjct: 139 SATCTVCQRPFPGEDIR--ADVMADRVPRCPVCTGVV 173
>2pby_A Glutaminase; secsg, riken, structural genomics, PSI, protein
structure initiative, riken structural
genomics/proteomics initiative, RSGI; 2.07A {Geobacillus
kaustophilus}
Length = 308
Score = 25.7 bits (56), Expect = 4.7
Identities = 13/73 (17%), Positives = 20/73 (27%), Gaps = 5/73 (6%)
Query: 4 AYCTSCKKKCSGEVLRVQDKYFH-----ITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQ 58
Y + +V + + Y +TC + LA G D
Sbjct: 172 CYFLKQHRIIDEDVEELMELYTKQCAIEMTCIDLARIGLVLALDGRDPHSSEPLMPLDVA 231
Query: 59 KKFGTKCAQCGEY 71
+ T CG Y
Sbjct: 232 RICKTFMVTCGMY 244
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc
finger, DNA binding protein-D complex; 2.40A {Homo
sapiens} PDB: 3oda_A
Length = 116
Score = 25.3 bits (55), Expect = 4.7
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 12/40 (30%)
Query: 3 KAYCTSCKKKCSGEVLRV------------QDKYFHITCF 30
+A C C + + LR+ ++H +CF
Sbjct: 38 RASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCF 77
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase,
hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA
binding; 2.8A {Sulfolobus solfataricus}
Length = 268
Score = 25.4 bits (56), Expect = 4.8
Identities = 3/35 (8%), Positives = 6/35 (17%), Gaps = 1/35 (2%)
Query: 5 YCTSCKKKCSGEVLRVQDKYFHITC-FQCSVCKNS 38
E ++ + C C
Sbjct: 143 KHIHPDCMQEFEWPEDEEMPEVLEMPTICPKCGKP 177
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1*
1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1*
1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1*
1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Length = 57
Score = 24.3 bits (53), Expect = 5.2
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 13/50 (26%)
Query: 58 QKKFGTKCAQCGEYVEGEVVTALGKTYHQKCFTCARCRF--SKKREIYNW 105
TKC +CGE K+YH K C+ C F S KR Y W
Sbjct: 13 NTTTHTKCRRCGE-----------KSYHTKKKVCSSCGFGKSAKRRDYEW 51
>3uo9_A Glutaminase kidney isoform, mitochondrial; hydrolase-hydrolase
inhibitor complex; HET: 04A; 2.30A {Homo sapiens} PDB:
3unw_A* 3ss3_A 3ss4_A 3ss5_A*
Length = 534
Score = 25.5 bits (55), Expect = 5.5
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Query: 12 KCSGEVLRVQDKYFH-----ITCFQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTKCA 66
+++ + D YF +TC SV +LA GG+ G + + + +
Sbjct: 332 PEGTDMVGILDFYFQLCSIEVTCESASVMAATLANGGFCPITGERVLSPEAVRNTLSLMH 391
Query: 67 QCGEY 71
CG Y
Sbjct: 392 SCGMY 396
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.6 bits (55), Expect = 6.1
Identities = 6/29 (20%), Positives = 10/29 (34%), Gaps = 2/29 (6%)
Query: 1 MIKAYCTSCKKKCSGEVLRVQDKYF--HI 27
++ Y + D+YF HI
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger,
PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1,
poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Length = 106
Score = 24.1 bits (52), Expect = 8.8
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 12/40 (30%)
Query: 3 KAYCTSCKKKCSGEVLRV------------QDKYFHITCF 30
+A C C + + LR+ ++H +CF
Sbjct: 25 RASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCF 64
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.138 0.463
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,899,009
Number of extensions: 102167
Number of successful extensions: 588
Number of sequences better than 10.0: 1
Number of HSP's gapped: 514
Number of HSP's successfully gapped: 185
Length of query: 120
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 38
Effective length of database: 4,412,271
Effective search space: 167666298
Effective search space used: 167666298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.8 bits)