RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17880
         (120 letters)



>d1v6ga1 g.39.1.3 (A:1-41) Actin-binding LIM protein 2, abLIM2
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 41

 Score = 53.3 bits (128), Expect = 1e-11
 Identities = 20/33 (60%), Positives = 27/33 (81%)

Query: 56 DYQKKFGTKCAQCGEYVEGEVVTALGKTYHQKC 88
          DYQ+ +GT+C  C +++EGEVV+ALGKTYH  C
Sbjct: 9  DYQRLYGTRCFSCDQFIEGEVVSALGKTYHPDC 41



 Score = 24.0 bits (52), Expect = 1.7
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query: 6  CTSCKKKCSGEVLRVQDKYFHITC 29
          C SC +   GEV+    K +H  C
Sbjct: 18 CFSCDQFIEGEVVSALGKTYHPDC 41


>d1x3ha1 g.39.1.3 (A:8-42) Leupaxin {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 35

 Score = 51.9 bits (125), Expect = 3e-11
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query: 56 DYQKKFGTKCAQCGEYVEGEVVTALGKTYHQKCF 89
          D+   F  KC  C   V    ++A+   +H +CF
Sbjct: 2  DFLAMFSPKCGGCNRPVLENYLSAMDTVWHPECF 35



 Score = 25.4 bits (56), Expect = 0.40
 Identities = 7/25 (28%), Positives = 9/25 (36%)

Query: 6  CTSCKKKCSGEVLRVQDKYFHITCF 30
          C  C +      L   D  +H  CF
Sbjct: 11 CGGCNRPVLENYLSAMDTVWHPECF 35


>d2dara2 g.39.1.3 (A:8-52) PDZ and LIM domain protein 5, Enigma
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 45

 Score = 37.8 bits (88), Expect = 1e-05
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 64 KCAQCGEYVEGEVVTALGKTYHQKCF 89
           CA C + + G  + ALGK++H + F
Sbjct: 20 MCAHCNQVIRGPFLVALGKSWHPEEF 45



 Score = 22.4 bits (48), Expect = 6.6
 Identities = 7/25 (28%), Positives = 9/25 (36%)

Query: 6  CTSCKKKCSGEVLRVQDKYFHITCF 30
          C  C +   G  L    K +H   F
Sbjct: 21 CAHCNQVIRGPFLVALGKSWHPEEF 45


>d1u5sb1 g.39.1.3 (B:72-102) Pinch (particularly interesting new
          Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
          Length = 31

 Score = 32.8 bits (75), Expect = 7e-04
 Identities = 10/27 (37%), Positives = 13/27 (48%)

Query: 59 KKFGTKCAQCGEYVEGEVVTALGKTYH 85
                C  C   +EG VV A+GK +H
Sbjct: 2  SMGVPICGACRRPIEGRVVNAMGKQWH 28


>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new
          Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
          Length = 35

 Score = 32.8 bits (75), Expect = 8e-04
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 30 FQCSVCKNSLAQGGYFNKDGAYYCTSDYQKKF 61
          F C+ C     +G ++  +G  YC  D+Q  F
Sbjct: 1  FVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLF 32


>d1b8ta4 g.39.1.3 (A:144-192) Cysteine-rich (intestinal) protein,
          CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
          Length = 49

 Score = 32.4 bits (74), Expect = 0.001
 Identities = 15/40 (37%), Positives = 18/40 (45%)

Query: 32 CSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTKCAQCGEY 71
          C+ C  SL      +KDG  YC   Y K FG K    G+ 
Sbjct: 2  CAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQG 41


>d2d8xa2 g.39.1.3 (A:8-32) Pinch (particularly interesting new
          Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
          Length = 26

 Score = 29.9 bits (67), Expect = 0.009
 Identities = 11/25 (44%), Positives = 18/25 (72%)

Query: 65 CAQCGEYVEGEVVTALGKTYHQKCF 89
          C QCGE++ G V+ A+  ++H +CF
Sbjct: 1  CHQCGEFIIGRVIKAMNNSWHPECF 25


>d2dj7a1 g.39.1.3 (A:44-74) Actin-binding LIM protein 3, abLIM-3
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 31

 Score = 29.4 bits (66), Expect = 0.014
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 31 QCSVCKNSLAQGGYFNKDGAYYCTSDYQKKFG 62
          +C  C   L  G Y +KDG  YC SDY  +FG
Sbjct: 1  KCQTCSVIL-TGEYISKDGVPYCESDYHAQFG 31


>d2dloa1 g.39.1.3 (A:8-42) Thyroid receptor interacting protein 6,
          TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 35

 Score = 29.4 bits (66), Expect = 0.015
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 64 KCAQCGEYVEGEVVTALGKTYHQKCF 89
          KCA C + +   ++ A+GK YH  CF
Sbjct: 10 KCATCSQPILDRILRAMGKAYHPGCF 35


>d1b8ta3 g.39.1.3 (A:101-143) Cysteine-rich (intestinal) protein,
          CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
          Length = 43

 Score = 29.1 bits (65), Expect = 0.020
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)

Query: 54 TSDYQKKFGT--KCAQCGEYV-EGEVVTALGKTYHQKCF 89
           S   +K G    C +CG+ V   E V   GK++H+ CF
Sbjct: 5  ASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCF 43


>d1x6aa1 g.39.1.3 (A:8-41) Lim domain kinase 2 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 34

 Score = 28.6 bits (64), Expect = 0.023
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 56 DYQKKFGTKCAQCGEYVEGEVVTALGKTYHQKC 88
          DY  KFG  C  C   + G  + A    YH +C
Sbjct: 2  DYWGKFGEFCHGCSLLMTGPFMVAGEFKYHPEC 34


>d1b8ta2 g.39.1.3 (A:36-100) Cysteine-rich (intestinal) protein,
          CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
          Length = 65

 Score = 29.4 bits (66), Expect = 0.024
 Identities = 13/33 (39%), Positives = 15/33 (45%)

Query: 32 CSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTK 64
          C VCK +L            YC S Y KK+G K
Sbjct: 2  CMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPK 34


>d2cuqa2 g.39.1.3 (A:8-42) Four and a half LIM domains 3, FHL3
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 35

 Score = 27.4 bits (61), Expect = 0.070
 Identities = 10/33 (30%), Positives = 19/33 (57%)

Query: 57 YQKKFGTKCAQCGEYVEGEVVTALGKTYHQKCF 89
          Y+ KF  +CA+C + +    VT   + +H++C 
Sbjct: 3  YENKFAPRCARCSKTLTQGGVTYRDQPWHRECL 35


>d2d8ya2 g.39.1.3 (A:44-85) Eplin, LIMA1 {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 42

 Score = 26.2 bits (58), Expect = 0.22
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 32 CSVCKNSLAQGGYFNKDGAYYCTSDYQKKFGTK 64
          CS C N L+ G Y +  G  YC   + + F +K
Sbjct: 2  CSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSK 34


>d1x64a1 g.39.1.3 (A:8-52) PDZ and LIM domain protein 3, PDLIM3
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 45

 Score = 25.9 bits (57), Expect = 0.28
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 65 CAQCGEYVEGEVVTALGKTYHQKCF 89
          C +CG  + G VV A  K  H +CF
Sbjct: 21 CDKCGSGIVGAVVKARDKYRHPECF 45



 Score = 24.7 bits (54), Expect = 0.82
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 6  CTSCKKKCSGEVLRVQDKYFHITCF 30
          C  C     G V++ +DKY H  CF
Sbjct: 21 CDKCGSGIVGAVVKARDKYRHPECF 45


>d1x63a1 g.39.1.3 (A:8-44) Four and a half LIM domains protein 1,
          FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 37

 Score = 25.5 bits (56), Expect = 0.37
 Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 2/35 (5%)

Query: 57 YQKKFGTKCAQCGEYVEG--EVVTALGKTYHQKCF 89
            ++   KC  C + +    + V   G  +H+ CF
Sbjct: 3  TTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCF 37


>d1x4ka1 g.39.1.3 (A:35-66) Four and a half LIM domains protein 2,
          FHL2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 32

 Score = 25.1 bits (55), Expect = 0.45
 Identities = 7/30 (23%), Positives = 13/30 (43%)

Query: 32 CSVCKNSLAQGGYFNKDGAYYCTSDYQKKF 61
          C  C+  +    +  KD   +C   Y+K+ 
Sbjct: 2  CHRCQQPIGTKSFIPKDNQNFCVPCYEKQH 31


>d1wyha1 g.39.1.3 (A:35-66) Four and a half LIM domains 3, FHL3
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 32

 Score = 25.1 bits (55), Expect = 0.53
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 32 CSVCKNSLAQGGYFNKDGAYYCTSDYQKKF 61
          CS C+  L    +    GA+YC   Y+ KF
Sbjct: 2  CSGCEQPLGSRSFVPDKGAHYCVPCYENKF 31


>d1x63a2 g.39.1.3 (A:45-76) Four and a half LIM domains protein 1,
          FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 32

 Score = 25.0 bits (54), Expect = 0.60
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 32 CSVCKNSLAQGGYFNKDGAYYCTSDYQKKFG 62
          CS CK  +  G +F K   +YC + ++ KF 
Sbjct: 2  CSNCKQVIGTGSFFPKGEDFYCVTCHETKFA 32


>d2co8a2 g.39.1.3 (A:8-43) Nedd9 interacting protein with calponin
          homology, NICAL (MICAL1) {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 36

 Score = 25.1 bits (55), Expect = 0.61
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)

Query: 62 GTKCAQCGEYV-EGEVVTALGKTYHQKCF 89
          G  CA CGE++   E +   G  +H+ CF
Sbjct: 8  GDLCALCGEHLYVLERLCVNGHFFHRSCF 36


>d2d8ya1 g.39.1.3 (A:9-43) Eplin, LIMA1 {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 35

 Score = 24.7 bits (54), Expect = 0.68
 Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 1/27 (3%)

Query: 64 KCAQCGEYV-EGEVVTALGKTYHQKCF 89
           C +C + V   E + A  + +H  CF
Sbjct: 9  TCVECQKTVYPMERLLANQQVFHISCF 35


>d1wiga1 g.39.1.3 (A:1-32) Actin-binding LIM protein 2, abLIM2
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 32

 Score = 24.2 bits (52), Expect = 0.94
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 6  CTSCKKKCSGEVLRVQDKYFHITC 29
          C SC+K  +G VL   +K++H +C
Sbjct: 8  CDSCEKYITGRVLEAGEKHYHPSC 31



 Score = 24.2 bits (52), Expect = 1.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 65 CAQCGEYVEGEVVTALGKTYHQKC 88
          C  C +Y+ G V+ A  K YH  C
Sbjct: 8  CDSCEKYITGRVLEAGEKHYHPSC 31


>d1u60a_ e.3.1.2 (A:) Probable glutaminase YbaS {Escherichia coli
           [TaxId: 562]}
          Length = 309

 Score = 25.9 bits (57), Expect = 1.3
 Identities = 10/73 (13%), Positives = 18/73 (24%), Gaps = 5/73 (6%)

Query: 4   AYCTSCKKKCSGEVLRVQDKYFHITCFQCSVCK-----NSLAQGGYFNKDGAYYCTSDYQ 58
           A+          + +   D Y        +  +      +LA GG           +D  
Sbjct: 171 AWLLYSAGYLYCDAMEACDVYTRQCSTLLNTIELATLGATLAAGGVNPLTHKRVLQADNV 230

Query: 59  KKFGTKCAQCGEY 71
                +    G Y
Sbjct: 231 PYILAEMMMEGLY 243


>d1x62a2 g.39.1.3 (A:8-42) PDZ and LIM domain protein 1 Elfin
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 35

 Score = 24.0 bits (52), Expect = 1.3
 Identities = 7/25 (28%), Positives = 12/25 (48%)

Query: 65 CAQCGEYVEGEVVTALGKTYHQKCF 89
          C +CG  + G  V    +  H +C+
Sbjct: 11 CDKCGTGIVGVFVKLRDRHRHPECY 35



 Score = 24.0 bits (52), Expect = 1.4
 Identities = 6/25 (24%), Positives = 13/25 (52%)

Query: 6  CTSCKKKCSGEVLRVQDKYFHITCF 30
          C  C     G  ++++D++ H  C+
Sbjct: 11 CDKCGTGIVGVFVKLRDRHRHPECY 35


>d2cu8a1 g.39.1.3 (A:8-37) Cysteine-rich (intestinal) protein,
          CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]}
          Length = 30

 Score = 23.6 bits (51), Expect = 1.5
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)

Query: 64 KCAQCGEYVE-GEVVTALGKTYHQKC 88
          KC +C + V   E V++LGK +H+ C
Sbjct: 4  KCPKCDKTVYFAEKVSSLGKDWHKFC 29


>d1rutx3 g.39.1.3 (X:83-113) LIM only 4 (Lmo4) {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 31

 Score = 23.5 bits (51), Expect = 1.6
 Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 5  YCTSCKKKCSGE--VLRVQDKYFHITCF 30
           C++C +       V+R Q   +H+ CF
Sbjct: 4  ACSACGQSIPASELVMRAQGNVYHLKCF 31


>d2dara1 g.39.1.3 (A:53-84) PDZ and LIM domain protein 5, Enigma
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 32

 Score = 23.2 bits (50), Expect = 2.4
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 32 CSVCKNSLAQGGYFNKDGAYYCTSDYQKKF 61
          C+ CKN++A  G+  + GA YC   Y+K F
Sbjct: 2  CAHCKNTMAYIGFVEEKGALYCELCYEKFF 31


>d1x3ha2 g.39.1.3 (A:43-74) Leupaxin {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 32

 Score = 22.8 bits (49), Expect = 4.0
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 32 CSVCKNSLAQGGYFNKDGAYYCTSDYQKKFG 62
          C  C  S + G +F  DG  +C   Y  + G
Sbjct: 2  CGDCFTSFSTGSFFELDGRPFCELHYHHRRG 32


>d1imla2 g.39.1.3 (A:29-76) Cysteine-rich (intestinal) protein,
          CRP, CRIP {Rat (Rattus rattus) [TaxId: 10117]}
          Length = 48

 Score = 22.8 bits (49), Expect = 4.1
 Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)

Query: 32 CSVCKNSLAQGGYFNKDGAYYCTSD-YQKKFGTK 64
          C  C  +L  GG+   +G  YC    Y   FG K
Sbjct: 2  CEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPK 35


>d1hula_ a.26.1.2 (A:) Interleukin-5 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 108

 Score = 24.0 bits (52), Expect = 4.2
 Identities = 10/22 (45%), Positives = 11/22 (50%)

Query: 1  MIKAYCTSCKKKCSGEVLRVQD 22
          +IK Y    KKKC  E  RV  
Sbjct: 70 LIKKYIDGQKKKCGEERRRVNQ 91


>d2dloa2 g.39.1.3 (A:43-75) Thyroid receptor interacting protein
          6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 33

 Score = 22.4 bits (48), Expect = 4.2
 Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 3/32 (9%)

Query: 32 CSVCKNSLAQGGYFNKD--GAYYCTSDYQKKF 61
          C VC   L  G  F  D     +C  D+ +KF
Sbjct: 2  CVVCHRGL-DGIPFTVDATSQIHCIEDFHRKF 32


>d1qgja_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress
           (Arabidopsis thaliana), peroxidase N [TaxId: 3702]}
          Length = 300

 Score = 24.3 bits (52), Expect = 4.5
 Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 3/47 (6%)

Query: 75  EVVTALGKTYHQKCFT---CARCRFSKKREIYNWLGGRAYENRLGGR 118
           EV+  +       C     CA       R+     GG  +   LG +
Sbjct: 75  EVIDTIKAAVENACPGVVSCADILTLAARDSVVLSGGPGWRVALGRK 121


>d1uw0a_ g.39.1.12 (A:) DNA ligase III {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 117

 Score = 23.8 bits (51), Expect = 5.0
 Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 14/42 (33%)

Query: 3  KAYCTSCKKKCSGEVLRV--------------QDKYFHITCF 30
           A C  CK+K    V R+                +++HI C 
Sbjct: 15 TAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCM 56


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.138    0.463 

Gapped
Lambda     K      H
   0.267   0.0589    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 493,938
Number of extensions: 23452
Number of successful extensions: 215
Number of sequences better than 10.0: 1
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 109
Length of query: 120
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 46
Effective length of database: 1,391,576
Effective search space: 64012496
Effective search space used: 64012496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.2 bits)