Query psy17881
Match_columns 68
No_of_seqs 25 out of 27
Neff 1.9
Searched_HMMs 46136
Date Fri Aug 16 16:32:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17881.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17881hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1044|consensus 97.9 9.2E-06 2E-10 67.8 2.7 58 1-58 461-553 (670)
2 KOG1044|consensus 93.0 0.064 1.4E-06 45.5 2.1 47 22-68 448-494 (670)
3 PF09832 DUF2059: Uncharacteri 21.0 42 0.00092 18.7 0.5 11 22-32 29-39 (64)
4 PF10629 DUF2475: Protein of u 19.5 42 0.00092 20.6 0.3 26 15-40 12-37 (71)
5 PHA02907 hypothetical protein; 17.3 69 0.0015 23.5 1.0 48 1-55 1-48 (182)
6 PLN03155 cytochrome c oxidase 17.1 27 0.0006 22.1 -0.9 33 8-40 12-44 (63)
7 PF00976 ACTH_domain: Corticot 15.6 60 0.0013 19.0 0.3 25 19-43 6-30 (39)
8 PF05251 UPF0197: Uncharacteri 13.2 74 0.0016 20.4 0.3 11 21-31 6-16 (77)
9 PF04182 B-block_TFIIIC: B-blo 10.5 1.4E+02 0.0029 17.6 0.8 14 27-40 22-35 (75)
10 KOG1273|consensus 10.4 1.4E+02 0.003 24.6 1.0 12 15-26 98-109 (405)
No 1
>KOG1044|consensus
Probab=97.86 E-value=9.2e-06 Score=67.83 Aligned_cols=58 Identities=28% Similarity=0.237 Sum_probs=52.0
Q ss_pred CCCCCCCCCCCCCCCcceeeeccchhHH-----------------------------------HHhhhcCCCCCCCCCCC
Q psy17881 1 MDPRNASRTPSATKEPMYRLRYQSPVNA-----------------------------------LLKQSHINPRNASRTPS 45 (68)
Q Consensus 1 ~dprnasrtpsa~kep~~r~ry~~p~~A-----------------------------------S~k~~~~DPRnASRtPs 45 (68)
++|++|+++++..+.+++..+|..|+++ +|+.-+.||||++|++.
T Consensus 461 ~~pdpas~~~~e~~~w~~~ps~~V~~~~~~~R~~~R~~eql~Kl~sgigq~ilKeeme~~r~~~~~~p~~sp~nssr~~~ 540 (670)
T KOG1044|consen 461 QAPDPASTPEIETDHWPGKPSFAVPGPEMKRRSLGRQEEQLMKLNSGLGQLILKEEMEKARSSLLASPYDSPRNSSRHIP 540 (670)
T ss_pred cCCCCCCCCcccccCCCCCCcccccCchhhhhhccchhhhhhhccchhhHHHHHHHhhhhhchhhccccCCccccccccC
Confidence 6899999999999999999999999543 46667789999999999
Q ss_pred CCCCCcceecccC
Q psy17881 46 ATKEPMYRLRYQS 58 (68)
Q Consensus 46 A~kEP~~rlRY~s 58 (68)
|.||+.|.++|+.
T Consensus 541 aske~~~~l~~~n 553 (670)
T KOG1044|consen 541 ASKEASLPLYGEN 553 (670)
T ss_pred ccccccccccccC
Confidence 9999999999974
No 2
>KOG1044|consensus
Probab=93.00 E-value=0.064 Score=45.49 Aligned_cols=47 Identities=11% Similarity=-0.007 Sum_probs=43.5
Q ss_pred ccchhHHHHhhhcCCCCCCCCCCCCCCCCcceecccCCCccccccCC
Q psy17881 22 YQSPVNALLKQSHINPRNASRTPSATKEPMYRLRYQSPVNACEYKLV 68 (68)
Q Consensus 22 y~~p~~AS~k~~~~DPRnASRtPsA~kEP~~rlRY~sPv~Aspsr~~ 68 (68)
|+-++-.+.-..+++|++|+++++..+.++++.+|..|+++++.|++
T Consensus 448 ~eDi~k~sk~p~~~~pdpas~~~~e~~~w~~~ps~~V~~~~~~~R~~ 494 (670)
T KOG1044|consen 448 SEDIIKFSKFPAAQAPDPASTPEIETDHWPGKPSFAVPGPEMKRRSL 494 (670)
T ss_pred ccchhhhhcCCcccCCCCCCCCcccccCCCCCCcccccCchhhhhhc
Confidence 77788888889999999999999999999999999999999999853
No 3
>PF09832 DUF2059: Uncharacterized protein conserved in bacteria (DUF2059); InterPro: IPR018637 This entry contains proteins that have no known function. ; PDB: 2X3O_B 3OAO_A.
Probab=20.96 E-value=42 Score=18.70 Aligned_cols=11 Identities=27% Similarity=0.610 Sum_probs=8.7
Q ss_pred ccchhHHHHhh
Q psy17881 22 YQSPVNALLKQ 32 (68)
Q Consensus 22 y~~p~~AS~k~ 32 (68)
|+||+|.++..
T Consensus 29 Y~Sp~Gqk~~~ 39 (64)
T PF09832_consen 29 YESPLGQKIVA 39 (64)
T ss_dssp HHSHHHHHHHH
T ss_pred HCCHHhHHHHH
Confidence 78999988754
No 4
>PF10629 DUF2475: Protein of unknown function (DUF2475); InterPro: IPR018902 This entry represents both UPF0573 and UPF0605 families. Both these families of proteins have no known function.
Probab=19.52 E-value=42 Score=20.61 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=22.0
Q ss_pred CcceeeeccchhHHHHhhhcCCCCCC
Q psy17881 15 EPMYRLRYQSPVNALLKQSHINPRNA 40 (68)
Q Consensus 15 ep~~r~ry~~p~~AS~k~~~~DPRnA 40 (68)
-|.++++|....+....+.--|++++
T Consensus 12 vP~~~~~~G~tyg~~t~~~l~d~~~~ 37 (71)
T PF10629_consen 12 VPGYKFRFGKTYGNTTRKLLQDFRNR 37 (71)
T ss_pred CCcccccccCcHHHHHHHHHHhHHHh
Confidence 47889999999999998888888764
No 5
>PHA02907 hypothetical protein; Provisional
Probab=17.33 E-value=69 Score=23.55 Aligned_cols=48 Identities=29% Similarity=0.400 Sum_probs=36.9
Q ss_pred CCCCCCCCCCCCCCCcceeeeccchhHHHHhhhcCCCCCCCCCCCCCCCCcceec
Q psy17881 1 MDPRNASRTPSATKEPMYRLRYQSPVNALLKQSHINPRNASRTPSATKEPMYRLR 55 (68)
Q Consensus 1 ~dprnasrtpsa~kep~~r~ry~~p~~AS~k~~~~DPRnASRtPsA~kEP~~rlR 55 (68)
++|||+.-.=|..|.-.-+||=++-+|-+ =-.|||.-..++-|+-|+-
T Consensus 1 mnprnspekysphknsvskmrpessfnvs-------lydasriraskhyphtrfp 48 (182)
T PHA02907 1 MNPRNSPEKYSPHKNSVSKMRPESSFNVS-------LYDASRIRASKHYPHTRFP 48 (182)
T ss_pred CCCCCCccccCccccchhhcCCcccccee-------ehhhhhhhhcccCCCCCCC
Confidence 57999988888888888899999988763 3457777777777777653
No 6
>PLN03155 cytochrome c oxidase subunit 5C; Provisional
Probab=17.09 E-value=27 Score=22.14 Aligned_cols=33 Identities=27% Similarity=0.300 Sum_probs=24.5
Q ss_pred CCCCCCCCcceeeeccchhHHHHhhhcCCCCCC
Q psy17881 8 RTPSATKEPMYRLRYQSPVNALLKQSHINPRNA 40 (68)
Q Consensus 8 rtpsa~kep~~r~ry~~p~~AS~k~~~~DPRnA 40 (68)
+-||-.||=.|-|--.---|..||+-||+-+..
T Consensus 12 ~gPsvvKEI~iG~~LGL~AG~~WKmhHWn~qrk 44 (63)
T PLN03155 12 KGPSVVKELCIGLTLGLAAGGLWKMHHWNEQRK 44 (63)
T ss_pred cCCchhhhHHHHhHHHHhhhhHHHHhhhhhHHH
Confidence 456777776666666666788999999987654
No 7
>PF00976 ACTH_domain: Corticotropin ACTH domain; InterPro: IPR013531 Pro-opiomelanocortin is present in high levels in the pituitary and is processed into 3 major peptide families: adrenocorticotrophin (ACTH); alpha-, beta- and gamma-melanocyte- stimulating hormones (MSH); and beta-endorphin []. ACTH regulates the synthesis and release of glucocorticoids and, to some extent, aldosterone in the adrenal cortex. It is synthesised and released in response to corticotrophin-releasing factor at times of stress (i.e. heat, cold, infection, etc.), its release leading to increased metabolism. The action of MSH in man is poorly understood, but it may be involved in temperature regulation []. Full activity of ACTH resides in the first 20 N-terminal amino acids, the first 13 of which are identical to alpha-MSH [, ]. The function of this region is not known, though it is found near the centre of these proteins.
Probab=15.59 E-value=60 Score=18.98 Aligned_cols=25 Identities=20% Similarity=0.428 Sum_probs=20.5
Q ss_pred eeeccchhHHHHhhhcCCCCCCCCC
Q psy17881 19 RLRYQSPVNALLKQSHINPRNASRT 43 (68)
Q Consensus 19 r~ry~~p~~AS~k~~~~DPRnASRt 43 (68)
-||+..|++..+++..+-|..+-..
T Consensus 6 hfrwgkp~g~KRRPvKVypn~~Eee 30 (39)
T PF00976_consen 6 HFRWGKPVGRKRRPVKVYPNGAEEE 30 (39)
T ss_pred ceeccCCCCcccCcceeCCCCcccc
Confidence 4799999999999988888776543
No 8
>PF05251 UPF0197: Uncharacterised protein family (UPF0197); InterPro: IPR007915 This family of proteins is functionally uncharacterised, but is thought to be a transmembrane protein.
Probab=13.17 E-value=74 Score=20.42 Aligned_cols=11 Identities=64% Similarity=0.924 Sum_probs=7.4
Q ss_pred eccchhHHHHh
Q psy17881 21 RYQSPVNALLK 31 (68)
Q Consensus 21 ry~~p~~AS~k 31 (68)
||.+||+.++-
T Consensus 6 ~Y~sPV~p~~~ 16 (77)
T PF05251_consen 6 RYTSPVNPALY 16 (77)
T ss_pred CcCCCCCHHHH
Confidence 67777776553
No 9
>PF04182 B-block_TFIIIC: B-block binding subunit of TFIIIC; InterPro: IPR007309 Yeast transcription factor IIIC (TFIIIC) is a multisubunit protein complex that interacts with two control elements of class III promoters called the A and B blocks. This family represents the subunit within TFIIIC involved in B-block binding []. Although defined as a yeast protein, it is also found in a number of other organisms.
Probab=10.48 E-value=1.4e+02 Score=17.57 Aligned_cols=14 Identities=36% Similarity=0.458 Sum_probs=11.0
Q ss_pred HHHHhhhcCCCCCC
Q psy17881 27 NALLKQSHINPRNA 40 (68)
Q Consensus 27 ~AS~k~~~~DPRnA 40 (68)
...|+..++|||+-
T Consensus 22 ~~L~~~~~~D~r~i 35 (75)
T PF04182_consen 22 SDLSKLLGIDPRSI 35 (75)
T ss_pred hHHHHHhCCCchHH
Confidence 35689999999874
No 10
>KOG1273|consensus
Probab=10.45 E-value=1.4e+02 Score=24.64 Aligned_cols=12 Identities=50% Similarity=1.107 Sum_probs=10.9
Q ss_pred Ccceeeeccchh
Q psy17881 15 EPMYRLRYQSPV 26 (68)
Q Consensus 15 ep~~r~ry~~p~ 26 (68)
.|.+|+||++||
T Consensus 98 s~l~rirf~spv 109 (405)
T KOG1273|consen 98 SPLKRIRFDSPV 109 (405)
T ss_pred CceeEEEccCcc
Confidence 489999999999
Done!