Query psy17881
Match_columns 68
No_of_seqs 25 out of 27
Neff 1.9
Searched_HMMs 29240
Date Fri Aug 16 16:32:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17881.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17881hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u9d_A Hypothetical protein VC 25.2 31 0.0011 22.2 1.5 11 11-21 12-22 (122)
2 3dad_A FH1/FH2 domain-containi 23.9 59 0.002 24.3 3.0 33 1-33 26-58 (339)
3 1bvo_A Transcription factor ga 9.6 73 0.0025 22.0 0.3 9 51-59 13-21 (175)
4 3p3d_A Nucleoporin 53; structu 8.1 2.2E+02 0.0076 18.7 2.2 15 16-30 63-77 (132)
5 1rnf_A RNAse 4, protein (ribon 7.1 1.5E+02 0.0052 18.3 1.0 12 28-39 7-18 (120)
6 2rfe_E ERBB receptor feedback 6.7 1.3E+02 0.0043 16.9 0.4 11 6-16 5-15 (40)
7 4i21_C ERBB receptor feedback 6.7 1.4E+02 0.0048 18.0 0.6 13 5-17 16-28 (62)
8 2jpf_A Hypothetical protein; a 6.4 2.9E+02 0.01 18.3 2.1 21 24-44 85-105 (127)
9 3h4q_A Putative acetyltransfer 6.3 1.2E+02 0.0042 16.9 0.2 21 36-56 3-23 (188)
10 4esk_A LAIR-1, mlair1, leukocy 6.0 1.3E+02 0.0044 17.1 0.2 16 48-63 74-89 (102)
No 1
>1u9d_A Hypothetical protein VC0714; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics; 1.70A {Vibrio cholerae o1 biovar eltor str} SCOP: d.80.1.5
Probab=25.20 E-value=31 Score=22.19 Aligned_cols=11 Identities=36% Similarity=0.579 Sum_probs=8.5
Q ss_pred CCCCCcceeee
Q psy17881 11 SATKEPMYRLR 21 (68)
Q Consensus 11 sa~kep~~r~r 21 (68)
|.+.||++|+|
T Consensus 12 ~~~~MPhlr~r 22 (122)
T 1u9d_A 12 SSNAMPHLRFR 22 (122)
T ss_dssp TTCCCCEEEEE
T ss_pred ccCCCceEEEC
Confidence 56778888887
No 2
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=23.92 E-value=59 Score=24.29 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=28.1
Q ss_pred CCCCCCCCCCCCCCCcceeeeccchhHHHHhhh
Q psy17881 1 MDPRNASRTPSATKEPMYRLRYQSPVNALLKQS 33 (68)
Q Consensus 1 ~dprnasrtpsa~kep~~r~ry~~p~~AS~k~~ 33 (68)
.||-|+.-.|-..+-|+|.|.=..|+.++.+..
T Consensus 26 ~dpf~~~~~~ep~r~~l~~fd~~~pL~~~i~~v 58 (339)
T 3dad_A 26 TDPFASANFPEPRRAPTCSLDGALPLGAQIPAV 58 (339)
T ss_dssp SSTTSCCCCCSSSSCCEEEEETTSCGGGTHHHH
T ss_pred CCccccCCCCCCCCCCceeccCcCCHHHHHHHH
Confidence 389998889999999999999999988766543
No 3
>1bvo_A Transcription factor gambif1; REL protein, morphogen, immunity, development, insects, complex (transcription factor/DNA); HET: DNA; 2.70A {Anopheles gambiae} SCOP: b.2.5.3
Probab=9.59 E-value=73 Score=21.99 Aligned_cols=9 Identities=33% Similarity=0.733 Sum_probs=6.6
Q ss_pred cceecccCC
Q psy17881 51 MYRLRYQSP 59 (68)
Q Consensus 51 ~~rlRY~sP 59 (68)
.+||||++=
T Consensus 13 g~RFRY~cE 21 (175)
T 1bvo_A 13 ALRFRYECE 21 (175)
T ss_dssp SCCCBCGGG
T ss_pred cceeEeccc
Confidence 478888764
No 4
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=8.08 E-value=2.2e+02 Score=18.66 Aligned_cols=15 Identities=20% Similarity=0.472 Sum_probs=11.9
Q ss_pred cceeeeccchhHHHH
Q psy17881 16 PMYRLRYQSPVNALL 30 (68)
Q Consensus 16 p~~r~ry~~p~~AS~ 30 (68)
-.++++|+++..|+.
T Consensus 63 NWikItYds~~~A~r 77 (132)
T 3p3d_A 63 SWTKITYDNPASAVD 77 (132)
T ss_dssp TEEEEEBSSHHHHHH
T ss_pred cEEEEEcCCHHHHHH
Confidence 456999999998843
No 5
>1rnf_A RNAse 4, protein (ribonuclease 4); hydrolase, phosphodiesterase; 2.10A {Homo sapiens} SCOP: d.5.1.1 PDB: 2rnf_A*
Probab=7.12 E-value=1.5e+02 Score=18.32 Aligned_cols=12 Identities=17% Similarity=0.512 Sum_probs=8.8
Q ss_pred HHHhhhcCCCCC
Q psy17881 28 ALLKQSHINPRN 39 (68)
Q Consensus 28 AS~k~~~~DPRn 39 (68)
+..+.+|+||..
T Consensus 7 ~~F~~qHvdp~~ 18 (120)
T 1rnf_A 7 QRFLRQHVHPEE 18 (120)
T ss_dssp HHHHHHHBCSSC
T ss_pred HHHHHheECCCC
Confidence 346789999854
No 6
>2rfe_E ERBB receptor feedback inhibitor 1; kinase domain, inhibition, dimer, peptide, alternative splicing, anti-oncogene, ATP-binding, cell cycle; 2.90A {Homo sapiens} PDB: 2rfd_C
Probab=6.72 E-value=1.3e+02 Score=16.86 Aligned_cols=11 Identities=55% Similarity=0.733 Sum_probs=1.2
Q ss_pred CCCCCCCCCCc
Q psy17881 6 ASRTPSATKEP 16 (68)
Q Consensus 6 asrtpsa~kep 16 (68)
.|||||..--|
T Consensus 5 ~sRtpSP~~lp 15 (40)
T 2rfe_E 5 NSRTPSPKSLP 15 (40)
T ss_dssp --------CCC
T ss_pred CCCCCCCccCc
Confidence 47888876433
No 7
>4i21_C ERBB receptor feedback inhibitor 1; EGFR kinase domain, phosphotransfer, MIG6 peptide, ATP bindi transferase-transferase inhibitor complex; 3.37A {Homo sapiens} PDB: 2rf9_C
Probab=6.67 E-value=1.4e+02 Score=18.01 Aligned_cols=13 Identities=46% Similarity=0.608 Sum_probs=3.9
Q ss_pred CCCCCCCCCCCcc
Q psy17881 5 NASRTPSATKEPM 17 (68)
Q Consensus 5 nasrtpsa~kep~ 17 (68)
-+|||||-..-|.
T Consensus 16 ~~sRTPSP~slp~ 28 (62)
T 4i21_C 16 SNSRTPSPKSLPS 28 (62)
T ss_dssp -------CCCCCC
T ss_pred CCCCCCCCCCccc
Confidence 4789998877653
No 8
>2jpf_A Hypothetical protein; all alpha helical protein, type III secretion effector protein, structural genomics; NMR {Bordetella parapertussis}
Probab=6.42 E-value=2.9e+02 Score=18.34 Aligned_cols=21 Identities=29% Similarity=0.270 Sum_probs=17.0
Q ss_pred chhHHHHhhhcCCCCCCCCCC
Q psy17881 24 SPVNALLKQSHINPRNASRTP 44 (68)
Q Consensus 24 ~p~~AS~k~~~~DPRnASRtP 44 (68)
+-+.|+|.++|=-|-.||.+-
T Consensus 85 shleaqwakqhgtpptasdvv 105 (127)
T 2jpf_A 85 SHLEAQWAKQHGTPPTASDVV 105 (127)
T ss_dssp HHHHHHGGGTCSSSCSTTTTT
T ss_pred HHHHHHHHHhcCCCCchhhhc
Confidence 346799999999998888753
No 9
>3h4q_A Putative acetyltransferase; NP_371943.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE P33; 2.50A {Staphylococcus aureus subsp}
Probab=6.29 E-value=1.2e+02 Score=16.89 Aligned_cols=21 Identities=5% Similarity=-0.143 Sum_probs=3.1
Q ss_pred CCCCCCCCCCCCCCCcceecc
Q psy17881 36 NPRNASRTPSATKEPMYRLRY 56 (68)
Q Consensus 36 DPRnASRtPsA~kEP~~rlRY 56 (68)
|+++.+-+|.....+.+.+|=
T Consensus 3 ~~~~~~~~~~~~~~~~~~iR~ 23 (188)
T 3h4q_A 3 SDKIHHHHHHENLYFQGMIRL 23 (188)
T ss_dssp ----------------CCEEE
T ss_pred CCCCCCcccccCcceeEEEEe
Confidence 455666666666666666663
No 10
>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, domain swapping, collagen receptor, structural genomics; 1.76A {Mus musculus}
Probab=6.04 E-value=1.3e+02 Score=17.14 Aligned_cols=16 Identities=13% Similarity=0.110 Sum_probs=11.9
Q ss_pred CCCcceecccCCCccc
Q psy17881 48 KEPMYRLRYQSPVNAC 63 (68)
Q Consensus 48 kEP~~rlRY~sPv~As 63 (68)
+.=.|+++|.+|...|
T Consensus 74 ~aG~Y~C~~~~~~~~S 89 (102)
T 4esk_A 74 ITGHYSCIYSKGITWS 89 (102)
T ss_dssp GCEEEEEEEEETTTEE
T ss_pred cCeeEEEEEeCCCccc
Confidence 3457999999887644
Done!