RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy17881
         (68 letters)



>gnl|CDD|197329 cd09095, INPP5c_INPP5E-like, Catalytic inositol polyphosphate
           5-phosphatase (INPP5c) domain of Inositol
           polyphosphate-5-phosphatase E and related proteins.
           INPP5c domain of Inositol polyphosphate-5-phosphatase E
           (also called type IV or 72 kDa 5-phosphatase), rat
           pharbin, and related proteins. This subfamily belongs to
           a family of Mg2+-dependent inositol polyphosphate
           5-phosphatases, which hydrolyze the 5-phosphate from the
           inositol ring of various 5-position phosphorylated
           phosphoinositides (PIs) and inositol phosphates (IPs),
           and to the large EEP
           (exonuclease/endonuclease/phosphatase) superfamily that
           contains functionally diverse enzymes that share a
           common catalytic mechanism of cleaving phosphodiester
           bonds. INPP5E hydrolyzes the 5-phosphate from PI(3,5)P2,
           PI(4,5)P2 and PI(3,4,5)P3, forming PI3P, PI4P, and
           PI(3,4)P2, respectively. It is a very potent PI(3,4,5)P3
           5-phosphatase. Its intracellular localization is chiefly
           cytosolic, with pronounced perinuclear/Golgi
           localization. INPP5E also has an N-terminal proline rich
           domain (PRD) and a C-terminal CAAX motif. This protein
           is expressed in a variety of tissues, including the
           breast, brain, testis, and haemopoietic cells. It is
           differentially expressed in several cancers, for
           example, it is up-regulated in cervical cancer and
           down-regulated in stomach cancer. It is a candidate
           target for therapeutics of obesity and related
           disorders, as it is expressed in the hypothalamus, and
           following insulin stimulation, it undergoes tyrosine
           phosphorylation, associates with insulin receptor
           substrate-1, -2, and PI3-kinase, and become active as a
           5-phosphatase. INPP5E may play a role, along with other
           5-phosphatases SHIP2 and SKIP, in regulating glucose
           homoeostasis and energy metabolism. Mice deficient in
           INPPE5 develop a multi-organ disorder associated with
           structural defects of the primary cilium.
          Length = 298

 Score = 27.4 bits (61), Expect = 0.43
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query: 42  RTPSATKEPMYRLRYQSPVNACEY 65
           R PS T   +YR R +  V   +Y
Sbjct: 255 RVPSYTDRILYRSRQKGDVCCLKY 278



 Score = 25.5 bits (56), Expect = 2.1
 Identities = 9/22 (40%), Positives = 11/22 (50%)

Query: 8   RTPSATKEPMYRLRYQSPVNAL 29
           R PS T   +YR R +  V  L
Sbjct: 255 RVPSYTDRILYRSRQKGDVCCL 276


>gnl|CDD|224230 COG1311, HYS2, Archaeal DNA polymerase II, small subunit/DNA
           polymerase delta, subunit B [DNA replication,
           recombination, and repair].
          Length = 481

 Score = 26.2 bits (58), Expect = 1.2
 Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 3/31 (9%)

Query: 19  RLRYQSPVNA---LLKQSHINPRNASRTPSA 46
              Y SP+ A   LLK+ H+ P      P A
Sbjct: 376 GADYDSPLKAMEELLKRRHLAPTYGGTLPIA 406


>gnl|CDD|226430 COG3916, LasI, N-acyl-L-homoserine lactone synthetase [Signal
          transduction mechanisms / Secondary metabolites
          biosynthesis, transport, and catabolism].
          Length = 209

 Score = 25.4 bits (56), Expect = 2.6
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)

Query: 35 INPRNASRTPSATKEPMYRLRYQ 57
          +NP      P A +E M+RLRYQ
Sbjct: 5  VNPDRRELFPKALEE-MHRLRYQ 26


>gnl|CDD|182454 PRK10430, PRK10430, DNA-binding transcriptional activator DcuR;
           Provisional.
          Length = 239

 Score = 24.7 bits (54), Expect = 4.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 12  ATKEPMYRLRYQSPVNALLKQ 32
            T  P+YR R Q+   +LLKQ
Sbjct: 216 VTGRPVYRYRLQAEHYSLLKQ 236


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.314    0.125    0.364 

Gapped
Lambda     K      H
   0.267   0.0674    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,160,526
Number of extensions: 207683
Number of successful extensions: 146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 8
Length of query: 68
Length of database: 10,937,602
Length adjustment: 39
Effective length of query: 29
Effective length of database: 9,207,796
Effective search space: 267026084
Effective search space used: 267026084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.3 bits)