RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy17881
         (68 letters)



>1ji6_A Pesticidial crystal protein CRY3BB; toxin; 2.40A {Bacillus
           thuringiensis} SCOP: b.18.1.3 b.77.2.1 f.1.3.1
          Length = 589

 Score = 28.7 bits (63), Expect = 0.11
 Identities = 11/50 (22%), Positives = 18/50 (36%)

Query: 9   TPSATKEPMYRLRYQSPVNALLKQSHINPRNASRTPSATKEPMYRLRYQS 58
           + +  +    R+RY S  N  L   + N        + T      L YQ+
Sbjct: 496 SAALLQRYRVRIRYASTTNLRLFVQNSNNDFLVIYINKTMNKDDDLTYQT 545


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.6 bits (58), Expect = 0.68
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 12/62 (19%)

Query: 3   PRNA--SRTPSATKEPMYRLRYQSPVNALLKQSHINPRNASRTPSATKEPMYRLRYQSPV 60
            +N   S  P +    +Y L        L K    +  + SR P + ++  +  R+  PV
Sbjct: 374 AKNLVVSGPPQS----LYGL-----NLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL-PV 423

Query: 61  NA 62
            +
Sbjct: 424 AS 425


>3p2h_A AHL synthase; acyl-ACP binding, SAM binding, signaling protein-I
          MTA complex, signaling protein-inhibitor complex; HET:
          MTA NOO; 2.00A {Burkholderia glumae} PDB: 3p2f_A*
          Length = 201

 Score = 24.9 bits (54), Expect = 2.2
 Identities = 5/24 (20%), Positives = 8/24 (33%)

Query: 34 HINPRNASRTPSATKEPMYRLRYQ 57
                A R P+     +   RY+
Sbjct: 2  QTFVHEAGRLPAHIAAELGSYRYR 25



 Score = 24.1 bits (52), Expect = 4.2
 Identities = 5/20 (25%), Positives = 8/20 (40%)

Query: 4  RNASRTPSATKEPMYRLRYQ 23
            A R P+     +   RY+
Sbjct: 6  HEAGRLPAHIAAELGSYRYR 25


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.314    0.125    0.364 

Gapped
Lambda     K      H
   0.267   0.0586    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 889,118
Number of extensions: 34836
Number of successful extensions: 84
Number of sequences better than 10.0: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 5
Length of query: 68
Length of database: 6,701,793
Length adjustment: 38
Effective length of query: 30
Effective length of database: 5,640,795
Effective search space: 169223850
Effective search space used: 169223850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.7 bits)