RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17881
         (68 letters)



>d1ji6a1 b.18.1.3 (A:503-652) delta-Endotoxin, C-terminal domain
           {Bacillus thuringiensis, CRY3bb1 [TaxId: 1428]}
          Length = 150

 Score = 24.1 bits (52), Expect = 1.5
 Identities = 11/51 (21%), Positives = 18/51 (35%)

Query: 8   RTPSATKEPMYRLRYQSPVNALLKQSHINPRNASRTPSATKEPMYRLRYQS 58
            + +  +    R+RY S  N  L   + N        + T      L YQ+
Sbjct: 56  NSAALLQRYRVRIRYASTTNLRLFVQNSNNDFLVIYINKTMNKDDDLTYQT 106


>d1w36b3 c.52.1.24 (B:899-1174) Exodeoxyribonuclease V beta chain
           (RecB), C-terminal domain {Escherichia coli [TaxId:
           562]}
          Length = 276

 Score = 23.1 bits (49), Expect = 4.0
 Identities = 6/26 (23%), Positives = 11/26 (42%)

Query: 31  KQSHINPRNASRTPSATKEPMYRLRY 56
           K + +   +++ T  A    M   RY
Sbjct: 184 KSNWLGEDSSAYTQQAMAAAMQAHRY 209


>d1ciya1 b.18.1.3 (A:462-609) delta-Endotoxin, C-terminal domain
           {Bacillus thuringiensis, CRYIA (A) [TaxId: 1428]}
          Length = 148

 Score = 22.5 bits (48), Expect = 5.7
 Identities = 11/40 (27%), Positives = 13/40 (32%)

Query: 19  RLRYQSPVNALLKQSHINPRNASRTPSATKEPMYRLRYQS 58
           R+RY S  N     S           SAT      L+  S
Sbjct: 64  RIRYASTTNLQFHTSIDGRPINQGNFSATMSSGSNLQSGS 103


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.125    0.364 

Gapped
Lambda     K      H
   0.267   0.0526    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 222,467
Number of extensions: 6959
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 3
Length of query: 68
Length of database: 2,407,596
Length adjustment: 37
Effective length of query: 31
Effective length of database: 1,899,586
Effective search space: 58887166
Effective search space used: 58887166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.4 bits)