BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17882
(181 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|242004528|ref|XP_002423135.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212506081|gb|EEB10397.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 467
Score = 301 bits (770), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 140/181 (77%), Positives = 158/181 (87%), Gaps = 1/181 (0%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAVKWAKNLPSFA+LPFRDQVILLEE WSELFLLNAIQW LP+ ESSPLF+ +EH A VP
Sbjct: 288 MAVKWAKNLPSFASLPFRDQVILLEECWSELFLLNAIQWCLPV-ESSPLFSVNEHAATVP 346
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
NGK+SQTAAD+RVLN +L R++ VGVDPAEFACLKA+VLFKSETRGLKD LQVENLQDQA
Sbjct: 347 NGKSSQTAADIRVLNDMLLRYKAVGVDPAEFACLKAIVLFKSETRGLKDPLQVENLQDQA 406
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
QVML QH R HP QPARFGRLLLM +++P+ RV+HIFF +T+ NT MEK+LCDMYK
Sbjct: 407 QVMLGQHARGQHPTQPARFGRLLLMIPLLKHVPTQRVEHIFFQRTIGNTPMEKVLCDMYK 466
Query: 181 N 181
N
Sbjct: 467 N 467
>gi|328707384|ref|XP_001948870.2| PREDICTED: photoreceptor-specific nuclear receptor-like
[Acyrthosiphon pisum]
Length = 510
Score = 285 bits (728), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 132/181 (72%), Positives = 155/181 (85%), Gaps = 1/181 (0%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAVKWAKNLPSFA+LPFRDQVILLEE WSELFLLNA+QW LPL E++PLFN S+HVAA+P
Sbjct: 331 MAVKWAKNLPSFASLPFRDQVILLEECWSELFLLNAVQWCLPL-ENNPLFNPSDHVAAIP 389
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
NGKASQ AAD+RVLN L+RFR + VDPAEFAC+KA+VLF+++TRGLKD +QVENLQDQA
Sbjct: 390 NGKASQVAADIRVLNETLRRFRTISVDPAEFACMKAIVLFRADTRGLKDPIQVENLQDQA 449
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
VML QH R HP QP RFGRLLLM +N+P+AR++ IFF +T+ N MEK+LCDMYK
Sbjct: 450 HVMLGQHTRNQHPGQPVRFGRLLLMLPLLKNVPAARIEAIFFQRTIGNIPMEKVLCDMYK 509
Query: 181 N 181
N
Sbjct: 510 N 510
>gi|383861940|ref|XP_003706442.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Megachile
rotundata]
Length = 537
Score = 256 bits (653), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 128/196 (65%), Positives = 149/196 (76%), Gaps = 16/196 (8%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVA--- 57
MAVKWAKNLPSFA+LPFRDQVILLEE+WSELFLLNA+QW LPL ESSPLFN++E A
Sbjct: 343 MAVKWAKNLPSFASLPFRDQVILLEEAWSELFLLNAVQWCLPL-ESSPLFNSAELTALTL 401
Query: 58 ------------AVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETR 105
GK SQ AADVR L+ LQR++ V VDPAEFAC+KA+VLF+ ETR
Sbjct: 402 SPHPHPHPGIHMQTTTGKPSQVAADVRHLHDTLQRYKAVMVDPAEFACMKAIVLFRPETR 461
Query: 106 GLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKT 165
GLKDS Q+ENLQDQAQVML QH R PA PARFGRLLL+ R +P++RV+ I+F +T
Sbjct: 462 GLKDSSQIENLQDQAQVMLGQHARAQQPASPARFGRLLLLLPLLRTVPASRVELIYFHRT 521
Query: 166 VANTSMEKLLCDMYKN 181
+ NT MEK+LCDMYKN
Sbjct: 522 IGNTPMEKVLCDMYKN 537
>gi|340709633|ref|XP_003393408.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Bombus
terrestris]
gi|350422440|ref|XP_003493165.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Bombus
impatiens]
Length = 540
Score = 254 bits (650), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 127/196 (64%), Positives = 148/196 (75%), Gaps = 16/196 (8%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVA--- 57
MAVKWAKNLPSFA+LPFRDQVILLEE+WSELFLLNA+QW LPL ESSPLFN++E A
Sbjct: 346 MAVKWAKNLPSFASLPFRDQVILLEEAWSELFLLNAVQWCLPL-ESSPLFNSAELTALTL 404
Query: 58 ------------AVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETR 105
GK SQ AADVR L+ LQR++ V VDPAEFAC+KA+VLF+ ETR
Sbjct: 405 SPHPHPHSGIHMQTTTGKPSQVAADVRHLHDTLQRYKAVMVDPAEFACMKAIVLFRPETR 464
Query: 106 GLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKT 165
GLKDS Q+ENLQDQAQVML QH R P PARFGRLLL+ R +P++RV+ I+F +T
Sbjct: 465 GLKDSSQIENLQDQAQVMLGQHARAQQPGSPARFGRLLLLLPLLRTVPASRVELIYFHRT 524
Query: 166 VANTSMEKLLCDMYKN 181
+ NT MEK+LCDMYKN
Sbjct: 525 IGNTPMEKVLCDMYKN 540
>gi|328792134|ref|XP_396999.4| PREDICTED: photoreceptor-specific nuclear receptor [Apis mellifera]
gi|380028656|ref|XP_003698008.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Apis
florea]
Length = 538
Score = 254 bits (650), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 127/196 (64%), Positives = 148/196 (75%), Gaps = 16/196 (8%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVA--- 57
MAVKWAKNLPSFA+LPFRDQVILLEE+WSELFLLNA+QW LPL ESSPLFN++E A
Sbjct: 344 MAVKWAKNLPSFASLPFRDQVILLEEAWSELFLLNAVQWCLPL-ESSPLFNSAELTALTL 402
Query: 58 ------------AVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETR 105
GK SQ AADVR L+ LQR++ V VDPAEFAC+KA+VLF+ ETR
Sbjct: 403 SPHPHPHSGIHMQTTTGKPSQVAADVRHLHDTLQRYKAVMVDPAEFACMKAIVLFRPETR 462
Query: 106 GLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKT 165
GLKDS Q+ENLQDQAQVML QH R P PARFGRLLL+ R +P++RV+ I+F +T
Sbjct: 463 GLKDSSQIENLQDQAQVMLGQHARAQQPGSPARFGRLLLLLPLLRTVPASRVELIYFHRT 522
Query: 166 VANTSMEKLLCDMYKN 181
+ NT MEK+LCDMYKN
Sbjct: 523 IGNTPMEKVLCDMYKN 538
>gi|307199534|gb|EFN80135.1| Photoreceptor-specific nuclear receptor [Harpegnathos saltator]
Length = 538
Score = 254 bits (649), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 128/196 (65%), Positives = 149/196 (76%), Gaps = 16/196 (8%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVA--- 57
MAVKWAKNLPSFA+LPFRDQVILLEE+WSELFLLNA+QW LPL ESSPLF+A+E A
Sbjct: 344 MAVKWAKNLPSFASLPFRDQVILLEEAWSELFLLNAVQWCLPL-ESSPLFSAAELTALTL 402
Query: 58 ------------AVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETR 105
GK SQ AADVR L+ LQR++ + VDPAEFAC+KA+VLF+ ETR
Sbjct: 403 SPHPHPHSGMHLQTTTGKPSQVAADVRHLHDTLQRYKAIMVDPAEFACMKAIVLFRPETR 462
Query: 106 GLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKT 165
GLKDS Q+ENLQDQAQVML QH R PA PARFGRLLL+ R +P+ARV+ I+F +T
Sbjct: 463 GLKDSSQIENLQDQAQVMLGQHARAQQPASPARFGRLLLLLPLLRAVPAARVELIYFHRT 522
Query: 166 VANTSMEKLLCDMYKN 181
+ NT MEK+LCDMYKN
Sbjct: 523 IGNTPMEKVLCDMYKN 538
>gi|270011038|gb|EFA07486.1| hormone receptor 51 [Tribolium castaneum]
Length = 470
Score = 249 bits (635), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 125/182 (68%), Positives = 145/182 (79%), Gaps = 7/182 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPL-LESSPLFNASEHVAAV 59
MAVKWAKNLPSFA+LPFRDQVILLEE+WSELFLLNAIQW +PL + +SPLFN +EHV
Sbjct: 295 MAVKWAKNLPSFASLPFRDQVILLEEAWSELFLLNAIQWCMPLDVSASPLFNVNEHV--- 351
Query: 60 PNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
K +A DVR+L L RF+ + VDPAEFACLKA+VLF+SETRGLKD Q+ENLQDQ
Sbjct: 352 ---KNGHSATDVRILADTLMRFKAIHVDPAEFACLKAIVLFRSETRGLKDPSQIENLQDQ 408
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
AQVML QH RT P Q ARFGRLLLM R +P++RV+ +FF KT+ NT MEK+LCDMY
Sbjct: 409 AQVMLWQHCRTQLPGQVARFGRLLLMLPLLRIVPASRVEAVFFQKTIGNTPMEKVLCDMY 468
Query: 180 KN 181
KN
Sbjct: 469 KN 470
>gi|189238719|ref|XP_970391.2| PREDICTED: similar to Hormone receptor 51 CG16801-PA [Tribolium
castaneum]
Length = 393
Score = 249 bits (635), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 125/182 (68%), Positives = 145/182 (79%), Gaps = 7/182 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPL-LESSPLFNASEHVAAV 59
MAVKWAKNLPSFA+LPFRDQVILLEE+WSELFLLNAIQW +PL + +SPLFN +EHV
Sbjct: 218 MAVKWAKNLPSFASLPFRDQVILLEEAWSELFLLNAIQWCMPLDVSASPLFNVNEHV--- 274
Query: 60 PNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
K +A DVR+L L RF+ + VDPAEFACLKA+VLF+SETRGLKD Q+ENLQDQ
Sbjct: 275 ---KNGHSATDVRILADTLMRFKAIHVDPAEFACLKAIVLFRSETRGLKDPSQIENLQDQ 331
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
AQVML QH RT P Q ARFGRLLLM R +P++RV+ +FF KT+ NT MEK+LCDMY
Sbjct: 332 AQVMLWQHCRTQLPGQVARFGRLLLMLPLLRIVPASRVEAVFFQKTIGNTPMEKVLCDMY 391
Query: 180 KN 181
KN
Sbjct: 392 KN 393
>gi|307168984|gb|EFN61863.1| Photoreceptor-specific nuclear receptor [Camponotus floridanus]
Length = 279
Score = 246 bits (627), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 125/196 (63%), Positives = 145/196 (73%), Gaps = 16/196 (8%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVA--- 57
MAVKWAKNLPSFA LPFRDQVILLEE WSELFLLNA+QW LPL ESSPLF+A+E A
Sbjct: 85 MAVKWAKNLPSFAGLPFRDQVILLEEVWSELFLLNAVQWCLPL-ESSPLFSAAELTALTL 143
Query: 58 ------------AVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETR 105
GK SQ AADVR L+ LQR++ V VDPAEFAC+KA+VLF+ ETR
Sbjct: 144 SPHPHPHSGLHLQTTTGKPSQVAADVRHLHDTLQRYKAVMVDPAEFACMKAIVLFRPETR 203
Query: 106 GLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKT 165
GLKDS Q+ENLQDQAQ+ML H R P PARFGRLLL+ R +P++RV+ I+F +T
Sbjct: 204 GLKDSSQIENLQDQAQLMLGHHARAQQPNSPARFGRLLLLLPLLRMVPASRVELIYFHRT 263
Query: 166 VANTSMEKLLCDMYKN 181
+ NT MEK+LCDMYKN
Sbjct: 264 IGNTPMEKVLCDMYKN 279
>gi|345487763|ref|XP_001606227.2| PREDICTED: photoreceptor-specific nuclear receptor [Nasonia
vitripennis]
Length = 551
Score = 245 bits (625), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 122/197 (61%), Positives = 149/197 (75%), Gaps = 17/197 (8%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASE------ 54
MAVKWAKNLPSFA+LPFRDQVILLEE+WSELFLLNA+QW LPL ESSPLF+A+E
Sbjct: 356 MAVKWAKNLPSFASLPFRDQVILLEEAWSELFLLNAVQWCLPL-ESSPLFSAAELSALTL 414
Query: 55 ---HVAAVPNG-------KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSET 104
H +G K++Q DVR L+ +L R++ + VDPAEFAC+KA++LF+ ET
Sbjct: 415 SPVHPVHPHSGLHLPSPTKSNQVGVDVRYLHDMLHRYKSIMVDPAEFACMKAIILFRPET 474
Query: 105 RGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAK 164
RGLKD Q+ENLQDQAQVML QH R+ HP PARFGRLLL+ RN+P+ RV+ I+F +
Sbjct: 475 RGLKDLNQIENLQDQAQVMLGQHTRSQHPNNPARFGRLLLLLPLLRNVPATRVELIYFHR 534
Query: 165 TVANTSMEKLLCDMYKN 181
T+ NT MEK+LCDMYKN
Sbjct: 535 TIGNTPMEKVLCDMYKN 551
>gi|443685615|gb|ELT89169.1| hypothetical protein CAPTEDRAFT_171557 [Capitella teleta]
Length = 437
Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 123/181 (67%), Positives = 144/181 (79%), Gaps = 1/181 (0%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAVKW+K+LPSFA LPFRDQVILLEE+WSELFLL AIQWS+P+ ESSPL + SEH P
Sbjct: 258 MAVKWSKSLPSFANLPFRDQVILLEEAWSELFLLCAIQWSMPM-ESSPLLSTSEHAQNAP 316
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
NGKA+ T D+R+L V RFR+ VDPAEFACLKA+VLFK +TRGLKD QVENLQDQA
Sbjct: 317 NGKATLTLTDIRILQEVFGRFRVAQVDPAEFACLKAIVLFKPDTRGLKDPHQVENLQDQA 376
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
Q+ML QH R PA PARFGRLLLM R PS+ +++IFF +T+ NT MEKLLCDM+K
Sbjct: 377 QLMLFQHCRAQRPALPARFGRLLLMLPLLRLAPSSHIENIFFRRTIGNTPMEKLLCDMFK 436
Query: 181 N 181
+
Sbjct: 437 S 437
>gi|259013303|ref|NP_001158447.1| photoreceptor-specific nuclear receptor protein [Saccoglossus
kowalevskii]
gi|196475499|gb|ACG76360.1| photoreceptor-specific nuclear receptor protein [Saccoglossus
kowalevskii]
Length = 439
Score = 243 bits (619), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 119/182 (65%), Positives = 142/182 (78%), Gaps = 3/182 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAVKWAKNLPSF+ALPFRDQVILLEE+WSELFLL AIQWS+P LESSPL A E A
Sbjct: 260 MAVKWAKNLPSFSALPFRDQVILLEEAWSELFLLCAIQWSMP-LESSPLLVAPEQSQATQ 318
Query: 61 -NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
NGK + +D+RVL ++ RF+ + VDPAEFAC+KA+VLFK +TRGLKD QVENLQDQ
Sbjct: 319 LNGKTAAMLSDIRVLQEIMARFKAMNVDPAEFACMKAIVLFKPDTRGLKDPQQVENLQDQ 378
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
AQ+ML QH R +HP QP RFGRLLLM R + R++++FF T+ NT ME+LLCDM+
Sbjct: 379 AQLMLGQHTR-NHPTQPTRFGRLLLMLPSLRFVTPNRIENLFFHHTIGNTPMERLLCDMF 437
Query: 180 KN 181
KN
Sbjct: 438 KN 439
>gi|332023687|gb|EGI63911.1| Photoreceptor-specific nuclear receptor [Acromyrmex echinatior]
Length = 730
Score = 241 bits (616), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 123/196 (62%), Positives = 143/196 (72%), Gaps = 16/196 (8%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVA--- 57
MAVKWAKNLPSFA LPFRDQVILLEE WSELFLLNA+QW LPL ESSPLF+A+E A
Sbjct: 415 MAVKWAKNLPSFAGLPFRDQVILLEEVWSELFLLNAVQWCLPL-ESSPLFSAAELTALTL 473
Query: 58 ------------AVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETR 105
GK SQ AADVR L+ LQR++ V VDPAEFAC+KA+VLF+ ETR
Sbjct: 474 SPHPHPHSGLHLQTTTGKPSQVAADVRHLHDTLQRYKAVMVDPAEFACMKAIVLFRPETR 533
Query: 106 GLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKT 165
GLKDS Q+ENLQDQAQ+ML H R P PARFGRLLL+ R +P+ARV+ I+F +T
Sbjct: 534 GLKDSSQIENLQDQAQLMLGHHARAQQPNSPARFGRLLLLLPLLRTVPAARVELIYFHRT 593
Query: 166 VANTSMEKLLCDMYKN 181
+ NT MEK+LCD+ N
Sbjct: 594 IGNTPMEKVLCDISGN 609
>gi|157115449|ref|XP_001658211.1| expressed protein (HR51) [Aedes aegypti]
gi|108876909|gb|EAT41134.1| AAEL007190-PA [Aedes aegypti]
Length = 594
Score = 241 bits (614), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 124/185 (67%), Positives = 145/185 (78%), Gaps = 4/185 (2%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESS-PLFNASEHVAAV 59
MAVKWAKNLPSFA+L FRDQVILLEESWSELFLLNAIQW +P+ S+ LF+ +EH ++V
Sbjct: 410 MAVKWAKNLPSFASLTFRDQVILLEESWSELFLLNAIQWCMPIDTSACTLFSLNEHCSSV 469
Query: 60 PNG---KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
N K Q A D+RVLN L RF+ V VDPAEFAC+KA+VLF+SE RGLKD +Q+ENL
Sbjct: 470 NNSGVFKPGQLAQDLRVLNDTLCRFKSVMVDPAEFACMKAIVLFRSEARGLKDPVQIENL 529
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
QDQAQVMLAQH RT P Q ARFGRLLLM R I S +++ I+F KT+ NT MEK+LC
Sbjct: 530 QDQAQVMLAQHSRTQFPGQIARFGRLLLMLPLLRIINSHKIESIYFQKTIGNTPMEKVLC 589
Query: 177 DMYKN 181
DMYKN
Sbjct: 590 DMYKN 594
>gi|170065210|ref|XP_001867845.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167882297|gb|EDS45680.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 505
Score = 238 bits (607), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 123/185 (66%), Positives = 145/185 (78%), Gaps = 4/185 (2%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESS-PLFNASEHVAAV 59
MAVKWAKNLPSFA+L FRDQVILLEESW+ELFLLNAIQW +P+ S+ LF+ +EH ++V
Sbjct: 321 MAVKWAKNLPSFASLTFRDQVILLEESWAELFLLNAIQWCMPIETSACTLFSLNEHCSSV 380
Query: 60 PNG---KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
N K Q A D+RVLN L RF+ V VDPAEFAC+KA+VLF+SE RGLKD +Q+ENL
Sbjct: 381 NNSGIFKPGQLAQDLRVLNDTLCRFKSVMVDPAEFACMKAIVLFRSEARGLKDPVQIENL 440
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
QDQAQVMLAQH RT P Q ARFGRLLLM R I S +++ I+F KT+ NT MEK+LC
Sbjct: 441 QDQAQVMLAQHSRTQFPGQIARFGRLLLMLPLLRIINSHKIESIYFQKTIGNTPMEKVLC 500
Query: 177 DMYKN 181
DMYKN
Sbjct: 501 DMYKN 505
>gi|312381897|gb|EFR27526.1| hypothetical protein AND_05729 [Anopheles darlingi]
Length = 399
Score = 237 bits (604), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 120/185 (64%), Positives = 144/185 (77%), Gaps = 4/185 (2%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESS-PLFNASEHVAAV 59
MAVKWAKNLPSFA+L FRDQVILLEESW+ELFLLNAIQW +P+ ++ LF+ +EH +V
Sbjct: 215 MAVKWAKNLPSFASLTFRDQVILLEESWAELFLLNAIQWCMPIDTTACTLFSLNEHCNSV 274
Query: 60 PNG---KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
N K Q A D+R+LN L RF+ V VDPAEFAC+KA+VLF+SE RGLKD +Q+ENL
Sbjct: 275 NNSGFFKPGQLAQDLRILNDTLCRFKSVMVDPAEFACMKAIVLFRSEARGLKDPVQIENL 334
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
QDQAQVMLAQH RT P Q ARFGRLLLM R + S +++ I+F KT+ NT MEK+LC
Sbjct: 335 QDQAQVMLAQHSRTQFPGQIARFGRLLLMLPLLRAVNSQKIESIYFQKTIGNTPMEKVLC 394
Query: 177 DMYKN 181
DMYKN
Sbjct: 395 DMYKN 399
>gi|410912674|ref|XP_003969814.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Takifugu
rubripes]
Length = 431
Score = 236 bits (603), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 116/181 (64%), Positives = 142/181 (78%), Gaps = 2/181 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M+VKWAKNLP F+ LPFRDQVILLEE+WSELFLL AIQWSLPL ES PL + + +
Sbjct: 253 MSVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLCAIQWSLPL-ESCPLLSLPDLCPGI- 310
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
GK S T+ D+R+L V RF+ + VDP EFACLKA+VLFK ETRGLKD QVENLQDQ+
Sbjct: 311 QGKGSYTSLDLRLLQEVFSRFKTLAVDPTEFACLKAIVLFKPETRGLKDPEQVENLQDQS 370
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
QVML QH+R+H+P+QPARFG+LLL+ R + S R++ +FF +T+ NT MEKLLCDM+K
Sbjct: 371 QVMLGQHIRSHYPSQPARFGKLLLLLPSLRFVNSERIELLFFHRTIGNTPMEKLLCDMFK 430
Query: 181 N 181
N
Sbjct: 431 N 431
>gi|147900594|ref|NP_001090633.1| nuclear receptor subfamily 2, group E, member 3 [Xenopus (Silurana)
tropicalis]
gi|115392210|gb|ABI96907.1| nuclear hormone receptor Nr2e3 [Xenopus (Silurana) tropicalis]
Length = 404
Score = 236 bits (601), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 113/181 (62%), Positives = 141/181 (77%), Gaps = 2/181 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAVKWAKNLP F+ LPFRDQVILLEE+WSELFLL AIQWS+PL +S PL + + + V
Sbjct: 226 MAVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLCAIQWSMPL-DSCPLLSVPDLSSQV- 283
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+GK+ + DVR+L + RF+ + VDP EFACLKAV+LFK ETRGLKD Q+ENLQDQ+
Sbjct: 284 HGKSVSSTIDVRILQETISRFKSLNVDPTEFACLKAVLLFKPETRGLKDPEQIENLQDQS 343
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
Q+MLAQH R +PAQP RFG+LLL++ R I S R++ +FF +T+ NT MEKLLCDM+K
Sbjct: 344 QMMLAQHTRNQYPAQPVRFGKLLLLSPSLRFISSERIELLFFHRTIGNTPMEKLLCDMFK 403
Query: 181 N 181
N
Sbjct: 404 N 404
>gi|348533763|ref|XP_003454374.1| PREDICTED: photoreceptor-specific nuclear receptor-like
[Oreochromis niloticus]
Length = 426
Score = 233 bits (595), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 115/181 (63%), Positives = 142/181 (78%), Gaps = 2/181 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M+VKWAKNLP F+ LPFRDQVILLEE+WSELFLL AIQWSLPL +S PL + + +
Sbjct: 248 MSVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLCAIQWSLPL-DSCPLLSLPDLCPGM- 305
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
GK S T+ D+R+L V RF+ + VDP EFACLKA+VLFK ETRGLKD QVENLQDQ+
Sbjct: 306 QGKTSYTSLDLRLLQEVFSRFKALAVDPTEFACLKAIVLFKPETRGLKDPEQVENLQDQS 365
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
QVML QH+R+H+P+QPARFG+LLL+ R + S R++ +FF +T+ NT MEKLLCDM+K
Sbjct: 366 QVMLGQHIRSHYPSQPARFGKLLLLLPSLRFVNSERIELLFFHRTIGNTPMEKLLCDMFK 425
Query: 181 N 181
N
Sbjct: 426 N 426
>gi|432850556|ref|XP_004066809.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Oryzias
latipes]
Length = 431
Score = 232 bits (591), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 114/181 (62%), Positives = 140/181 (77%), Gaps = 2/181 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M+VKWAKNLP F+ LPFRDQVILLEE+WSELFLL AIQWSLPL +S PL + + +
Sbjct: 253 MSVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLCAIQWSLPL-DSCPLLSLPDLCPGM- 310
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
GK S T D+R+L RF+ + VDP EFACLKA+VLFK ETRGLKD QVENLQDQ+
Sbjct: 311 QGKTSYTGLDLRLLQEAFSRFKALAVDPTEFACLKAIVLFKPETRGLKDPEQVENLQDQS 370
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
QVML QH+R+H+P+QPARFG+LLL+ R + S R++ +FF +T+ NT MEKLLCDM+K
Sbjct: 371 QVMLGQHIRSHYPSQPARFGKLLLLLPSLRFVNSERIELLFFHRTIGNTPMEKLLCDMFK 430
Query: 181 N 181
N
Sbjct: 431 N 431
>gi|432850560|ref|XP_004066811.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Oryzias latipes]
Length = 385
Score = 232 bits (591), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 114/181 (62%), Positives = 140/181 (77%), Gaps = 2/181 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M+VKWAKNLP F+ LPFRDQVILLEE+WSELFLL AIQWSLPL +S PL + + +
Sbjct: 207 MSVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLCAIQWSLPL-DSCPLLSLPDLCPGM- 264
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
GK S T D+R+L RF+ + VDP EFACLKA+VLFK ETRGLKD QVENLQDQ+
Sbjct: 265 QGKTSYTGLDLRLLQEAFSRFKALAVDPTEFACLKAIVLFKPETRGLKDPEQVENLQDQS 324
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
QVML QH+R+H+P+QPARFG+LLL+ R + S R++ +FF +T+ NT MEKLLCDM+K
Sbjct: 325 QVMLGQHIRSHYPSQPARFGKLLLLLPSLRFVNSERIELLFFHRTIGNTPMEKLLCDMFK 384
Query: 181 N 181
N
Sbjct: 385 N 385
Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 94/160 (58%), Positives = 119/160 (74%), Gaps = 2/160 (1%)
Query: 16 PFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNGKASQTAADVRVLN 75
P ++VILLEE+WSELFLL AIQWSLPL +S PL + + + GK S T D+R+L
Sbjct: 46 PDAEKVILLEEAWSELFLLCAIQWSLPL-DSCPLLSLPDLCPGM-QGKTSYTGLDLRLLQ 103
Query: 76 GVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQ 135
RF+ + VDP EFACLKA+VLFK ETRGLKD QVENLQDQ+QVML QH+R+H+P+Q
Sbjct: 104 EAFSRFKALAVDPTEFACLKAIVLFKPETRGLKDPEQVENLQDQSQVMLGQHIRSHYPSQ 163
Query: 136 PARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLL 175
PARFG+LLL+ R + S R++ +FF +T+ NT MEKLL
Sbjct: 164 PARFGKLLLLLPSLRFVNSERIELLFFHRTIGNTPMEKLL 203
>gi|118777094|ref|XP_307453.3| Anopheles gambiae str. PEST AGAP012600-PA [Anopheles gambiae str.
PEST]
gi|116133146|gb|EAA03055.4| AGAP012600-PA [Anopheles gambiae str. PEST]
Length = 202
Score = 231 bits (588), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 117/185 (63%), Positives = 141/185 (76%), Gaps = 4/185 (2%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPL-LESSPLFNASEHVAAV 59
MAVKWAKNLPSFA+L FRDQVILLEESW+ELFLLNAIQW +P+ + LF+ +EH +
Sbjct: 18 MAVKWAKNLPSFASLTFRDQVILLEESWAELFLLNAIQWCMPIDTTACTLFSLNEHCNSA 77
Query: 60 PNG---KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
N K Q ++R+LN L RF+ V VDPAEFAC+KA+VLF+SE RGLKD +Q+ENL
Sbjct: 78 NNSGFFKPGQVNDNLRILNDTLCRFKSVLVDPAEFACMKAIVLFRSEARGLKDPVQIENL 137
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
QDQAQVMLAQH RT P Q ARFGRLLLM R + S +++ I+F KT+ NT MEK+LC
Sbjct: 138 QDQAQVMLAQHSRTQFPGQIARFGRLLLMLPLLRAVNSHKIESIYFQKTIGNTPMEKVLC 197
Query: 177 DMYKN 181
DMYKN
Sbjct: 198 DMYKN 202
>gi|327285350|ref|XP_003227397.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Anolis
carolinensis]
Length = 418
Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 114/181 (62%), Positives = 139/181 (76%), Gaps = 2/181 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAVKWAKNLP F+ LPFRDQVILLEE+WSELFLL AIQWSLPL E+ PL + S+ A+
Sbjct: 240 MAVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLCAIQWSLPL-ETCPLLSVSDLAPAL- 297
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
NGK D+R L V+ RF+ + VDP EFAC+KA+VLFK ETRGLKD QVENLQDQ+
Sbjct: 298 NGKLVSGGTDIRALQEVIARFKALAVDPTEFACMKAIVLFKPETRGLKDPDQVENLQDQS 357
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
QVML QH + H+P+QP RFG+LLL+ + I S R++ +FF +T+ NT MEKLLCDM+K
Sbjct: 358 QVMLGQHNQIHYPSQPVRFGKLLLLLPSLKFISSDRIELLFFRRTIGNTPMEKLLCDMFK 417
Query: 181 N 181
N
Sbjct: 418 N 418
>gi|55925261|ref|NP_001007369.1| photoreceptor-specific nuclear receptor [Danio rerio]
gi|55250124|gb|AAH85568.1| Zgc:103631 [Danio rerio]
gi|182889208|gb|AAI64789.1| Zgc:103631 protein [Danio rerio]
Length = 419
Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 115/181 (63%), Positives = 142/181 (78%), Gaps = 2/181 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M+VKWAKNLP F+ LPFRDQVILLEE+WSELFLL AIQWSLPL ++ PL + + ++
Sbjct: 241 MSVKWAKNLPVFSHLPFRDQVILLEEAWSELFLLCAIQWSLPL-DNCPLLSLPD-LSPTG 298
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
GK S +A+DVRVL V RF+ + VDP EFACLKA+VLFK ETRGLKD QVENLQDQ+
Sbjct: 299 QGKGSPSASDVRVLQEVFSRFKPLQVDPTEFACLKAIVLFKPETRGLKDPEQVENLQDQS 358
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
QV+LAQH+ T +P+Q ARFGRLLL+ + S R++H+FF +T+ NT MEKLLCDM+K
Sbjct: 359 QVLLAQHIHTLYPSQVARFGRLLLLLPSLHFVSSERIEHLFFQRTIGNTPMEKLLCDMFK 418
Query: 181 N 181
N
Sbjct: 419 N 419
>gi|441617194|ref|XP_004088427.1| PREDICTED: LOW QUALITY PROTEIN: photoreceptor-specific nuclear
receptor [Nomascus leucogenys]
Length = 562
Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 113/182 (62%), Positives = 136/182 (74%), Gaps = 2/182 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAV- 59
MAVKWAKNLP F++LPFRDQVILLEE+WSELFLL AIQWSLPL +S PL E AA
Sbjct: 382 MAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPL-DSCPLLAPPEASAAGG 440
Query: 60 PNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
G+ + + + RVL + RFR + VDP EFAC+KA+VLFK ETRGLKD VE LQDQ
Sbjct: 441 AQGRLTLASMETRVLRETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQ 500
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
+QVML+QH + HHP+QP RFG+LLL R I + R++ +FF KT+ NT MEKLLCDM+
Sbjct: 501 SQVMLSQHSKAHHPSQPVRFGKLLLXLPSLRFITAERIELLFFRKTIGNTPMEKLLCDMF 560
Query: 180 KN 181
KN
Sbjct: 561 KN 562
>gi|116517488|gb|ABJ99096.1| nuclear receptor subfamily 2 group E member 3 [Danio rerio]
Length = 348
Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 115/181 (63%), Positives = 142/181 (78%), Gaps = 2/181 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M+VKWAKNLP F+ LPFRDQVILLEE+WSELFLL AIQWSLPL ++ PL + + ++
Sbjct: 170 MSVKWAKNLPVFSHLPFRDQVILLEEAWSELFLLCAIQWSLPL-DNCPLLSLPD-LSPTG 227
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
GK S +A+DVRVL V RF+ + VDP EFACLKA+VLFK ETRGLKD QVENLQDQ+
Sbjct: 228 QGKGSPSASDVRVLQEVFSRFKPLQVDPTEFACLKAIVLFKPETRGLKDPEQVENLQDQS 287
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
QV+LAQH+ T +P+Q ARFGRLLL+ + S R++H+FF +T+ NT MEKLLCDM+K
Sbjct: 288 QVLLAQHIHTLYPSQVARFGRLLLLLPSLHFVSSERIEHLFFQRTIGNTPMEKLLCDMFK 347
Query: 181 N 181
N
Sbjct: 348 N 348
>gi|449267650|gb|EMC78568.1| Photoreceptor-specific nuclear receptor [Columba livia]
Length = 406
Score = 229 bits (584), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 117/181 (64%), Positives = 134/181 (74%), Gaps = 5/181 (2%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAVKWAK LP F+ LPFRDQVILLEE+WSELFLL AIQWS+PL ES PL E
Sbjct: 231 MAVKWAKTLPVFSNLPFRDQVILLEEAWSELFLLCAIQWSMPL-ESCPLLAVPEPAP--- 286
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
GK TA D+R L L RF+ + VDP EFAC+KAVVLFK ETRGLKD QVENLQDQ+
Sbjct: 287 -GKLLPTALDIRALQETLSRFKALAVDPTEFACMKAVVLFKPETRGLKDPEQVENLQDQS 345
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
QVML QH R+H+P QP RFG+LLL+ R I S RV+ +FF +T+ NT MEKLLCDM+K
Sbjct: 346 QVMLGQHNRSHYPGQPVRFGKLLLLLPALRFISSERVELLFFRRTIGNTPMEKLLCDMFK 405
Query: 181 N 181
N
Sbjct: 406 N 406
>gi|224062203|ref|XP_002192483.1| PREDICTED: photoreceptor-specific nuclear receptor [Taeniopygia
guttata]
Length = 404
Score = 229 bits (583), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 117/181 (64%), Positives = 134/181 (74%), Gaps = 5/181 (2%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAVKWAKNLP F+ LPFRDQVILLEE+WSELFLL AIQWS+PL ES PL E +
Sbjct: 229 MAVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLCAIQWSMPL-ESCPLLAVPEPTS--- 284
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
GK DVR L L RF+ + VDP EFAC+KAVVLFK ETRGLKD QVENLQDQ+
Sbjct: 285 -GKLLPATLDVRALQETLGRFKALAVDPTEFACMKAVVLFKPETRGLKDPEQVENLQDQS 343
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
QVML QH R+H+P QP RFG+LLL+ R I S RV+ +FF +T+ NT MEKLLCDM+K
Sbjct: 344 QVMLGQHNRSHYPGQPVRFGKLLLLLPALRFISSERVELLFFRRTIGNTPMEKLLCDMFK 403
Query: 181 N 181
N
Sbjct: 404 N 404
>gi|405974187|gb|EKC38851.1| Photoreceptor-specific nuclear receptor [Crassostrea gigas]
Length = 438
Score = 228 bits (582), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 113/184 (61%), Positives = 138/184 (75%), Gaps = 6/184 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
+A++WAKNLPSFA LPFRDQVILLEE+WSELFLL AIQWS+P+ E+SPL H AA P
Sbjct: 258 VAIRWAKNLPSFANLPFRDQVILLEEAWSELFLLCAIQWSMPM-ETSPLLMT--HEAAQP 314
Query: 61 ---NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQ 117
N K D R+L + +RF+ VDPAEFACLKA+ LFK ETRGLKD LQVEN Q
Sbjct: 315 QMSNIKTGSEYPDNRLLQEIFRRFKHTQVDPAEFACLKAIALFKPETRGLKDPLQVENFQ 374
Query: 118 DQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCD 177
DQAQ+M++QHVR+++P Q RFGRLLLM + +PS RV+ IFF +T+ + MEKLLCD
Sbjct: 375 DQAQMMMSQHVRSNYPTQHIRFGRLLLMIPSLKFVPSDRVEKIFFGRTIGSVPMEKLLCD 434
Query: 178 MYKN 181
M+K
Sbjct: 435 MFKG 438
>gi|410960926|ref|XP_003987038.1| PREDICTED: photoreceptor-specific nuclear receptor [Felis catus]
Length = 411
Score = 228 bits (580), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 117/182 (64%), Positives = 139/182 (76%), Gaps = 2/182 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAVKWAKNLP F+ LPFRDQVILLEE+WSELFLL AIQWSLPL +S PL A E AA
Sbjct: 231 MAVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLGAIQWSLPL-DSCPLLAAPEASAAGS 289
Query: 61 N-GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
+ G+ + +A+ RVL + RFR + VDP EFAC+KA+VLFK ETRGLKD VE LQDQ
Sbjct: 290 SQGRLALASAESRVLQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQ 349
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
+QVML+QH + HHP+QP RFG+LLL+ R I S RV+ +FF KT+ NT MEKLLCDM+
Sbjct: 350 SQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERVELLFFRKTIGNTPMEKLLCDMF 409
Query: 180 KN 181
KN
Sbjct: 410 KN 411
>gi|326926346|ref|XP_003209363.1| PREDICTED: LOW QUALITY PROTEIN: photoreceptor-specific nuclear
receptor-like [Meleagris gallopavo]
Length = 395
Score = 226 bits (575), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 117/181 (64%), Positives = 134/181 (74%), Gaps = 5/181 (2%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAVKWAKNLP F+ LPFRDQVILLEE+WSELFLL AIQWS+PL ES PL E
Sbjct: 220 MAVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLCAIQWSMPL-ESCPLLAVPEPSP--- 275
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
GK A DVR L L RF+ + VDP EFAC+KAVVLFK ETRGLKD QVENLQDQ+
Sbjct: 276 -GKLLPAAVDVRALQETLGRFKALAVDPTEFACMKAVVLFKPETRGLKDPEQVENLQDQS 334
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
QVML QH R+H+P QP RFG+LLL+ R + S RV+ +FF +T+ NT MEKLLCDM+K
Sbjct: 335 QVMLGQHNRSHYPGQPVRFGKLLLLLPALRFLSSERVELLFFRRTIGNTPMEKLLCDMFK 394
Query: 181 N 181
N
Sbjct: 395 N 395
>gi|431893708|gb|ELK03529.1| Photoreceptor-specific nuclear receptor [Pteropus alecto]
Length = 417
Score = 225 bits (574), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 115/182 (63%), Positives = 139/182 (76%), Gaps = 2/182 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAVKWAKNLP F+ LPFRDQVILLEE+WSELFLL AIQWSLPL +S PL E AA
Sbjct: 237 MAVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLGAIQWSLPL-DSCPLLAPPEASAAGS 295
Query: 61 N-GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
+ G+ + +A++R+L + RFR + VDP EFAC+KA+VLFK ETRGLKD VE LQDQ
Sbjct: 296 SQGRLALASAEMRILQETILRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQ 355
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
+QVML+QH + HHP+QP RFG+LLL+ R I S RV+ +FF KT+ NT MEKLLCDM+
Sbjct: 356 SQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERVELLFFRKTIGNTPMEKLLCDMF 415
Query: 180 KN 181
KN
Sbjct: 416 KN 417
>gi|45382987|ref|NP_989925.1| photoreceptor-specific nuclear receptor [Gallus gallus]
gi|15777197|gb|AAL05940.1| photoreceptor-specific nuclear receptor [Gallus gallus]
Length = 406
Score = 225 bits (573), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 117/181 (64%), Positives = 134/181 (74%), Gaps = 5/181 (2%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAVKWAKNLP F+ LPFRDQVILLEE+WSELFLL AIQWS+PL ES PL E
Sbjct: 231 MAVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLCAIQWSMPL-ESCPLLAVPEPSP--- 286
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
GK A DVR L L RF+ + VDP EFAC+KAVVLFK ETRGLKD QVENLQDQ+
Sbjct: 287 -GKLLPAAVDVRALQETLGRFKALAVDPTEFACMKAVVLFKPETRGLKDPEQVENLQDQS 345
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
QVML QH R+H+P QP RFG+LLL+ R + S RV+ +FF +T+ NT MEKLLCDM+K
Sbjct: 346 QVMLGQHNRSHYPGQPVRFGKLLLLLPALRFLSSERVELLFFRRTIGNTPMEKLLCDMFK 405
Query: 181 N 181
N
Sbjct: 406 N 406
>gi|149692277|ref|XP_001495004.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Equus
caballus]
Length = 480
Score = 224 bits (572), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 115/182 (63%), Positives = 138/182 (75%), Gaps = 2/182 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAVKWAKNLP F+ LPFRDQVILLEE+WSELFLL AIQWSLP L+S PL E AA
Sbjct: 300 MAVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLGAIQWSLP-LDSCPLLAPPEASAAGS 358
Query: 61 N-GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
+ G+ + +A+ R+L + RFR + VDP EFAC+KA+VLFK ETRGLKD VE LQDQ
Sbjct: 359 SQGRLALASAETRILQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQ 418
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
+QVML+QH + HHP+QP RFG+LLL+ S R I S RV+ +FF KT+ NT MEKLLCDM+
Sbjct: 419 SQVMLSQHSKAHHPSQPVRFGKLLLLLSSLRFITSERVELLFFRKTIGNTPMEKLLCDMF 478
Query: 180 KN 181
K
Sbjct: 479 KT 480
>gi|109081780|ref|XP_001089693.1| PREDICTED: photoreceptor-specific nuclear receptor [Macaca mulatta]
Length = 448
Score = 224 bits (572), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 112/182 (61%), Positives = 136/182 (74%), Gaps = 2/182 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASE-HVAAV 59
MAVKWAKNLP F++LPFRDQVILLEE+WSELFLL AIQWSLPL +S PL E A
Sbjct: 268 MAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPL-DSCPLLAPPEASTAGG 326
Query: 60 PNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
G+ + + + RVL + RFR + VDP EFAC+KA+VLFK ETRGLKD VE LQDQ
Sbjct: 327 AQGRLTLASMETRVLRETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQ 386
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
+QVML+QH + HHP+QP RFG+LLL+ R I + R++ +FF KT+ NT MEKLLCDM+
Sbjct: 387 SQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLCDMF 446
Query: 180 KN 181
KN
Sbjct: 447 KN 448
>gi|390331720|ref|XP_780706.3| PREDICTED: photoreceptor-specific nuclear receptor-like
[Strongylocentrotus purpuratus]
Length = 443
Score = 224 bits (571), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 109/181 (60%), Positives = 135/181 (74%), Gaps = 3/181 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAVKWAK LPSF+ LPFRDQVILLEE+WSELFLL A+QWS+PL +S PL +
Sbjct: 266 MAVKWAKTLPSFSGLPFRDQVILLEEAWSELFLLCALQWSMPL-DSCPLLTGLHEQSQT- 323
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
KA+ +D+R+L ++ RFR + VDPAEFACLKA+VLFK ETRGLKD QVE LQDQA
Sbjct: 324 -DKAATCVSDIRLLQEIMSRFRGLRVDPAEFACLKAIVLFKPETRGLKDPQQVEILQDQA 382
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
+ML QH+R H PAQ ARFGR+LL+ R + S +V+ +FF T+ +T ME+LLCDM+K
Sbjct: 383 HMMLTQHIRAHQPAQTARFGRMLLLLPSLRFVTSDQVERLFFRCTIGDTPMERLLCDMFK 442
Query: 181 N 181
N
Sbjct: 443 N 443
>gi|402874751|ref|XP_003901191.1| PREDICTED: photoreceptor-specific nuclear receptor [Papio anubis]
Length = 445
Score = 224 bits (571), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 113/182 (62%), Positives = 137/182 (75%), Gaps = 2/182 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAV- 59
MAVKWAKNLP F++LPFRDQVILLEE+WSELFLL AIQWSLPL +S PL E AA
Sbjct: 265 MAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPL-DSCPLLAPPEASAAGG 323
Query: 60 PNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
G+ + + + RVL + RFR + VDP EFAC+KA+VLFK ETRGLKD VE LQDQ
Sbjct: 324 AQGRLTLASMETRVLRETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQ 383
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
+QVML+QH + HHP+QP RFG+LLL+ R I + R++ +FF KT+ NT MEKLLCDM+
Sbjct: 384 SQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLCDMF 443
Query: 180 KN 181
KN
Sbjct: 444 KN 445
>gi|297697018|ref|XP_002825669.1| PREDICTED: photoreceptor-specific nuclear receptor [Pongo abelii]
Length = 614
Score = 224 bits (571), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 113/182 (62%), Positives = 136/182 (74%), Gaps = 2/182 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAV- 59
MAVKWAKNLP F+ LPFRDQVILLEE+WSELFLL AIQWSLPL +S PL E AA
Sbjct: 434 MAVKWAKNLPVFSGLPFRDQVILLEEAWSELFLLGAIQWSLPL-DSCPLLAPPEASAAGG 492
Query: 60 PNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
G+ + + + RVL + RFR + VDP EFAC+KA+VLFK ETRGLKD VE LQDQ
Sbjct: 493 AQGRLTLASMETRVLRETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQ 552
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
+QVML+QH + HHP+QP RFG+LLL+ R I + R++ +FF KT+ NT MEKLLCDM+
Sbjct: 553 SQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLCDMF 612
Query: 180 KN 181
KN
Sbjct: 613 KN 614
>gi|7657395|ref|NP_055064.1| photoreceptor-specific nuclear receptor isoform b [Homo sapiens]
gi|8928275|sp|Q9Y5X4.1|NR2E3_HUMAN RecName: Full=Photoreceptor-specific nuclear receptor; AltName:
Full=Nuclear receptor subfamily 2 group E member 3;
AltName: Full=Retina-specific nuclear receptor
gi|4726075|gb|AAD28301.1|AF121129_1 photoreceptor-specific nuclear receptor [Homo sapiens]
gi|7329721|emb|CAB82769.1| photoreceptor-specific nuclear receptor [Homo sapiens]
gi|119598282|gb|EAW77876.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_a
[Homo sapiens]
gi|216409728|dbj|BAH02301.1| photoreceptor-specific nuclear receptor [Homo sapiens]
Length = 410
Score = 224 bits (571), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 113/182 (62%), Positives = 137/182 (75%), Gaps = 2/182 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAV- 59
MAVKWAKNLP F++LPFRDQVILLEE+WSELFLL AIQWSLPL +S PL E AA
Sbjct: 230 MAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPL-DSCPLLAPPEASAAGG 288
Query: 60 PNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
G+ + + + RVL + RFR + VDP EFAC+KA+VLFK ETRGLKD VE LQDQ
Sbjct: 289 AQGRLTLASMETRVLQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQ 348
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
+QVML+QH + HHP+QP RFG+LLL+ R I + R++ +FF KT+ NT MEKLLCDM+
Sbjct: 349 SQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLCDMF 408
Query: 180 KN 181
KN
Sbjct: 409 KN 410
>gi|397495510|ref|XP_003818595.1| PREDICTED: photoreceptor-specific nuclear receptor isoform 2 [Pan
paniscus]
Length = 322
Score = 224 bits (570), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 113/182 (62%), Positives = 137/182 (75%), Gaps = 2/182 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAV- 59
MAVKWAKNLP F++LPFRDQVILLEE+WSELFLL AIQWSLPL +S PL E AA
Sbjct: 142 MAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPL-DSCPLLAPPEASAAGG 200
Query: 60 PNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
G+ + + + RVL + RFR + VDP EFAC+KA+VLFK ETRGLKD VE LQDQ
Sbjct: 201 AQGRLTLASMETRVLRETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQ 260
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
+QVML+QH + HHP+QP RFG+LLL+ R I + R++ +FF KT+ NT MEKLLCDM+
Sbjct: 261 SQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLCDMF 320
Query: 180 KN 181
KN
Sbjct: 321 KN 322
>gi|114657922|ref|XP_001175020.1| PREDICTED: photoreceptor-specific nuclear receptor isoform 1 [Pan
troglodytes]
Length = 322
Score = 224 bits (570), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 113/182 (62%), Positives = 137/182 (75%), Gaps = 2/182 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAV- 59
MAVKWAKNLP F++LPFRDQVILLEE+WSELFLL AIQWSLPL +S PL E AA
Sbjct: 142 MAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPL-DSCPLLAPPEASAAGG 200
Query: 60 PNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
G+ + + + RVL + RFR + VDP EFAC+KA+VLFK ETRGLKD VE LQDQ
Sbjct: 201 AQGRLTLASMETRVLRETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQ 260
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
+QVML+QH + HHP+QP RFG+LLL+ R I + R++ +FF KT+ NT MEKLLCDM+
Sbjct: 261 SQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLCDMF 320
Query: 180 KN 181
KN
Sbjct: 321 KN 322
>gi|27371232|gb|AAH41421.1| NR2E3 protein [Homo sapiens]
Length = 322
Score = 224 bits (570), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 113/182 (62%), Positives = 137/182 (75%), Gaps = 2/182 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAV- 59
MAVKWAKNLP F++LPFRDQVILLEE+WSELFLL AIQWSLPL +S PL E AA
Sbjct: 142 MAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPL-DSCPLLAPPEASAAGG 200
Query: 60 PNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
G+ + + + RVL + RFR + VDP EFAC+KA+VLFK ETRGLKD VE LQDQ
Sbjct: 201 AQGRLTLASMETRVLQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQ 260
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
+QVML+QH + HHP+QP RFG+LLL+ R I + R++ +FF KT+ NT MEKLLCDM+
Sbjct: 261 SQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLCDMF 320
Query: 180 KN 181
KN
Sbjct: 321 KN 322
>gi|114657918|ref|XP_001175025.1| PREDICTED: photoreceptor-specific nuclear receptor isoform 3 [Pan
troglodytes]
Length = 402
Score = 224 bits (570), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 113/182 (62%), Positives = 137/182 (75%), Gaps = 2/182 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAV- 59
MAVKWAKNLP F++LPFRDQVILLEE+WSELFLL AIQWSLPL +S PL E AA
Sbjct: 222 MAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPL-DSCPLLAPPEASAAGG 280
Query: 60 PNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
G+ + + + RVL + RFR + VDP EFAC+KA+VLFK ETRGLKD VE LQDQ
Sbjct: 281 AQGRLTLASMETRVLRETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQ 340
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
+QVML+QH + HHP+QP RFG+LLL+ R I + R++ +FF KT+ NT MEKLLCDM+
Sbjct: 341 SQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLCDMF 400
Query: 180 KN 181
KN
Sbjct: 401 KN 402
>gi|355692849|gb|EHH27452.1| Retina-specific nuclear receptor, partial [Macaca mulatta]
Length = 411
Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 113/182 (62%), Positives = 137/182 (75%), Gaps = 2/182 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAV- 59
MAVKWAKNLP F++LPFRDQVILLEE+WSELFLL AIQWSLPL +S PL E AA
Sbjct: 231 MAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPL-DSCPLLAPPEASAAGG 289
Query: 60 PNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
G+ + + + RVL + RFR + VDP EFAC+KA+VLFK ETRGLKD VE LQDQ
Sbjct: 290 AQGRLTLASMETRVLRETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQ 349
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
+QVML+QH + HHP+QP RFG+LLL+ R I + R++ +FF KT+ NT MEKLLCDM+
Sbjct: 350 SQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLCDMF 409
Query: 180 KN 181
KN
Sbjct: 410 KN 411
>gi|426379592|ref|XP_004056476.1| PREDICTED: photoreceptor-specific nuclear receptor [Gorilla gorilla
gorilla]
Length = 402
Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 113/182 (62%), Positives = 137/182 (75%), Gaps = 2/182 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAV- 59
MAVKWAKNLP F++LPFRDQVILLEE+WSELFLL AIQWSLPL +S PL E AA
Sbjct: 222 MAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPL-DSCPLLAPPEASAAGG 280
Query: 60 PNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
G+ + + + RVL + RFR + VDP EFAC+KA+VLFK ETRGLKD VE LQDQ
Sbjct: 281 AQGRLTLASMETRVLRETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQ 340
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
+QVML+QH + HHP+QP RFG+LLL+ R I + R++ +FF KT+ NT MEKLLCDM+
Sbjct: 341 SQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLCDMF 400
Query: 180 KN 181
KN
Sbjct: 401 KN 402
>gi|397495508|ref|XP_003818594.1| PREDICTED: photoreceptor-specific nuclear receptor isoform 1 [Pan
paniscus]
Length = 402
Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 113/182 (62%), Positives = 137/182 (75%), Gaps = 2/182 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAV- 59
MAVKWAKNLP F++LPFRDQVILLEE+WSELFLL AIQWSLPL +S PL E AA
Sbjct: 222 MAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPL-DSCPLLAPPEASAAGG 280
Query: 60 PNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
G+ + + + RVL + RFR + VDP EFAC+KA+VLFK ETRGLKD VE LQDQ
Sbjct: 281 AQGRLTLASMETRVLRETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQ 340
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
+QVML+QH + HHP+QP RFG+LLL+ R I + R++ +FF KT+ NT MEKLLCDM+
Sbjct: 341 SQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLCDMF 400
Query: 180 KN 181
KN
Sbjct: 401 KN 402
>gi|395822830|ref|XP_003784710.1| PREDICTED: photoreceptor-specific nuclear receptor [Otolemur
garnettii]
Length = 693
Score = 223 bits (569), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 112/182 (61%), Positives = 138/182 (75%), Gaps = 2/182 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAVKWAKNLP F++LPFRDQVILLEE+WSELFLL AIQWSLPL + PL E AA
Sbjct: 513 MAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPL-DGCPLLVPPEASAASG 571
Query: 61 N-GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
+ G+ + + ++R+L + RFR + VDP EFAC+KA+VLFK ETRGLKD VE LQDQ
Sbjct: 572 SQGRHTLASMEMRILRETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQ 631
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
+QVML+QH + HHP+QP RFG+LLL+ R I S R++ +FF KT+ NT MEKLLCDM+
Sbjct: 632 SQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERIELLFFRKTIGNTPMEKLLCDMF 691
Query: 180 KN 181
KN
Sbjct: 692 KN 693
>gi|432111648|gb|ELK34747.1| Photoreceptor-specific nuclear receptor [Myotis davidii]
Length = 404
Score = 223 bits (567), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 113/182 (62%), Positives = 139/182 (76%), Gaps = 2/182 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAVKWAK+LP F+ LPFRDQVILLEE+WSELFLL AIQWSLPL +S PL E AA
Sbjct: 224 MAVKWAKSLPVFSNLPFRDQVILLEEAWSELFLLGAIQWSLPL-DSCPLLAPPEASAAGS 282
Query: 61 N-GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
+ G+ + +A++R L + RFR++ VDP EFAC+KA+VLFK ETRGLKD VE LQDQ
Sbjct: 283 SQGRLALASAEMRFLQETISRFRVLAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQ 342
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
+QVML+QH + HHP+QP RFG+LLL+ R I S R++ +FF KT+ NT MEKLLCDM+
Sbjct: 343 SQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERIELLFFRKTIGNTPMEKLLCDMF 402
Query: 180 KN 181
KN
Sbjct: 403 KN 404
>gi|403276151|ref|XP_003929774.1| PREDICTED: photoreceptor-specific nuclear receptor [Saimiri
boliviensis boliviensis]
Length = 552
Score = 222 bits (565), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 111/182 (60%), Positives = 137/182 (75%), Gaps = 2/182 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAV- 59
M+VKWAKNLP F++LPFRDQVILLEE+WSELFLL AIQWSLPL +S PL E AA
Sbjct: 372 MSVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPL-DSCPLLAPPEASAAGG 430
Query: 60 PNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
G+ + + + R+L + RFR + VDP EFAC+KA+VLFK ETRGLKD VE LQDQ
Sbjct: 431 AQGRLTLASMETRILQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQ 490
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
+QVML+QH + HHP+QP RFG+LLL+ R I + R++ +FF KT+ NT MEKLLCDM+
Sbjct: 491 SQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLCDMF 550
Query: 180 KN 181
KN
Sbjct: 551 KN 552
>gi|126272955|ref|XP_001371421.1| PREDICTED: photoreceptor-specific nuclear receptor-like
[Monodelphis domestica]
Length = 405
Score = 222 bits (565), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 110/181 (60%), Positives = 136/181 (75%), Gaps = 2/181 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAVKWAKNLP F+ LPFRDQVILLEE+WSELFLL AIQWSLPL ES PL + + +
Sbjct: 227 MAVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLCAIQWSLPL-ESCPLLSVPDPTPGI- 284
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
GK + + ++L + RF+ + VDP EFAC+KA+VLFK ETRGLKD QVENLQDQ+
Sbjct: 285 QGKLMSASIETQILQETIARFKSLTVDPTEFACMKALVLFKPETRGLKDPEQVENLQDQS 344
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
QVML QH + H+P+QP RFG+LLL+ R I S R++ +FF +T+ NT MEKLLCDM+K
Sbjct: 345 QVMLGQHNKMHYPSQPVRFGKLLLLLPALRFISSDRIELLFFRRTIGNTPMEKLLCDMFK 404
Query: 181 N 181
N
Sbjct: 405 N 405
>gi|269315847|ref|NP_001161372.1| photoreceptor-specific nuclear receptor [Bos taurus]
gi|296483590|tpg|DAA25705.1| TPA: photoreceptor-specific nuclear receptor [Bos taurus]
Length = 411
Score = 222 bits (565), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 113/182 (62%), Positives = 136/182 (74%), Gaps = 2/182 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAVKWAKNLP F+ LPFRDQVILLEE+WSELFLL AIQWSLPL ++ PL E A
Sbjct: 231 MAVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLGAIQWSLPL-DNCPLLALPEASAGGS 289
Query: 61 N-GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
+ G+ +A+ R+L + RFR + VDP EFAC+KA+VLFK ETRGLKD VE LQDQ
Sbjct: 290 SQGRLVLASAETRILQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQ 349
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
+QVML+QH + HHP+QP RFG+LLL+ R I S RV+ +FF KT+ NT MEKLLCDM+
Sbjct: 350 SQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFISSERVELLFFRKTIGNTPMEKLLCDMF 409
Query: 180 KN 181
KN
Sbjct: 410 KN 411
>gi|440897500|gb|ELR49170.1| Photoreceptor-specific nuclear receptor, partial [Bos grunniens
mutus]
Length = 427
Score = 222 bits (565), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 113/182 (62%), Positives = 136/182 (74%), Gaps = 2/182 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAVKWAKNLP F+ LPFRDQVILLEE+WSELFLL AIQWSLPL ++ PL E A
Sbjct: 247 MAVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLGAIQWSLPL-DNCPLLALPEASAGGS 305
Query: 61 N-GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
+ G+ +A+ R+L + RFR + VDP EFAC+KA+VLFK ETRGLKD VE LQDQ
Sbjct: 306 SQGRLVLASAETRILQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQ 365
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
+QVML+QH + HHP+QP RFG+LLL+ R I S RV+ +FF KT+ NT MEKLLCDM+
Sbjct: 366 SQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFISSERVELLFFRKTIGNTPMEKLLCDMF 425
Query: 180 KN 181
KN
Sbjct: 426 KN 427
>gi|296213607|ref|XP_002753344.1| PREDICTED: photoreceptor-specific nuclear receptor [Callithrix
jacchus]
Length = 368
Score = 221 bits (563), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 112/182 (61%), Positives = 137/182 (75%), Gaps = 2/182 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAV- 59
M+VKWAKNLP F++LPFRDQVILLEE+WSELFLL AIQWSLPL +S PL E AA
Sbjct: 188 MSVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPL-DSCPLLAPPEASAAGG 246
Query: 60 PNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
G+ + + + RVL + RFR + VDP EFAC+KA+VLFK ETRGLKD VE LQDQ
Sbjct: 247 APGRLTLASMETRVLQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQ 306
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
+QVML+QH + HHP+QP RFG+LLL+ R I + R++ +FF KT+ NT MEKLLCDM+
Sbjct: 307 SQVMLSQHSKAHHPSQPMRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLCDMF 366
Query: 180 KN 181
KN
Sbjct: 367 KN 368
>gi|344284423|ref|XP_003413967.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Loxodonta
africana]
Length = 608
Score = 221 bits (563), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 111/182 (60%), Positives = 136/182 (74%), Gaps = 2/182 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAVKWAKNLP F++LPFRDQVILLEE+WSELFLL AIQWSLPL +S PL E AA
Sbjct: 428 MAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPL-DSCPLLAPPEAPAASS 486
Query: 61 N-GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
+ G+ + ++ L + RFR + VDP EFAC+KA+VLF+ ETRGLKD VE LQDQ
Sbjct: 487 SQGRLKLASMEIHALQETISRFRALAVDPTEFACMKALVLFRPETRGLKDPENVEALQDQ 546
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
+QVML+QH + HHP+QP RFG+LLL+ R I S R++ +FF KT+ NT MEKLLCDM+
Sbjct: 547 SQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERIELLFFRKTIGNTPMEKLLCDMF 606
Query: 180 KN 181
KN
Sbjct: 607 KN 608
>gi|281353714|gb|EFB29298.1| hypothetical protein PANDA_011329 [Ailuropoda melanoleuca]
Length = 391
Score = 221 bits (563), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 115/182 (63%), Positives = 137/182 (75%), Gaps = 2/182 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAVKWAKNLP F+ LPFRDQVILLEE+WSELFLL AIQWSLPL +S PL A E AA
Sbjct: 211 MAVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLGAIQWSLPL-DSCPLLAAPEASAAGS 269
Query: 61 N-GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
+ G+ + +A+ R+L + RFR + VD EFACLKA+VLFK ETRGLK VE LQDQ
Sbjct: 270 SQGQLALASAESRILQETISRFRALAVDATEFACLKALVLFKPETRGLKGPEHVEALQDQ 329
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
+QVML+QH + HHP+QP RFG+LLL+ R I S RV+ +FF KT+ NT MEKLLCDM+
Sbjct: 330 SQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERVELLFFRKTIGNTPMEKLLCDMF 389
Query: 180 KN 181
KN
Sbjct: 390 KN 391
>gi|301773902|ref|XP_002922374.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Ailuropoda
melanoleuca]
Length = 483
Score = 221 bits (562), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 115/182 (63%), Positives = 137/182 (75%), Gaps = 2/182 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAVKWAKNLP F+ LPFRDQVILLEE+WSELFLL AIQWSLPL +S PL A E AA
Sbjct: 303 MAVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLGAIQWSLPL-DSCPLLAAPEASAAGS 361
Query: 61 N-GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
+ G+ + +A+ R+L + RFR + VD EFACLKA+VLFK ETRGLK VE LQDQ
Sbjct: 362 SQGQLALASAESRILQETISRFRALAVDATEFACLKALVLFKPETRGLKGPEHVEALQDQ 421
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
+QVML+QH + HHP+QP RFG+LLL+ R I S RV+ +FF KT+ NT MEKLLCDM+
Sbjct: 422 SQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERVELLFFRKTIGNTPMEKLLCDMF 481
Query: 180 KN 181
KN
Sbjct: 482 KN 483
>gi|395501668|ref|XP_003755213.1| PREDICTED: LOW QUALITY PROTEIN: photoreceptor-specific nuclear
receptor [Sarcophilus harrisii]
Length = 327
Score = 221 bits (562), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 110/181 (60%), Positives = 135/181 (74%), Gaps = 2/181 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAVKWAKNLP F+ LPFRDQVILLEE+WSELFLL AIQWSLPL ES PL + + +
Sbjct: 149 MAVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLCAIQWSLPL-ESCPLLSVPDPTPGI- 206
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
GK + ++L + RF+ + VDP EFAC+KA+VLFK ETRGLKD QVENLQDQ+
Sbjct: 207 QGKLMSAPIETQILQETIARFKSLTVDPTEFACMKALVLFKPETRGLKDPEQVENLQDQS 266
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
QVML QH + H+P+QP RFG+LLL+ R I S R++ +FF +T+ NT MEKLLCDM+K
Sbjct: 267 QVMLGQHNKMHYPSQPVRFGKLLLLLPSLRFISSDRIELLFFRRTIGNTPMEKLLCDMFK 326
Query: 181 N 181
N
Sbjct: 327 N 327
>gi|158298860|ref|XP_319009.4| AGAP009890-PA [Anopheles gambiae str. PEST]
gi|157014089|gb|EAA14402.4| AGAP009890-PA [Anopheles gambiae str. PEST]
Length = 526
Score = 221 bits (562), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 114/185 (61%), Positives = 137/185 (74%), Gaps = 9/185 (4%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPL-LESSPLFNASEHVAAV 59
MAVKWAKNLPSFA+L FRDQVILLEESW+ELFLLNAIQW +P+ + LF+ +EH +
Sbjct: 347 MAVKWAKNLPSFASLTFRDQVILLEESWAELFLLNAIQWCMPIDTTACTLFSLNEHCNSA 406
Query: 60 PNG---KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
N K Q A D+R+LN L RF+ V VDPAEFAC+KA+VLF+SE RGLKD +Q+ENL
Sbjct: 407 NNSGFFKPGQLAQDLRILNDTLCRFKSVLVDPAEFACMKAIVLFRSEARGLKDPVQIENL 466
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
QDQ AQH RT P Q ARFGRLLLM R + S +++ I+F KT+ NT MEK+LC
Sbjct: 467 QDQ-----AQHSRTQFPGQIARFGRLLLMLPLLRAVNSHKIESIYFQKTIGNTPMEKVLC 521
Query: 177 DMYKN 181
DMYKN
Sbjct: 522 DMYKN 526
>gi|391330852|ref|XP_003739866.1| PREDICTED: photoreceptor-specific nuclear receptor-like
[Metaseiulus occidentalis]
Length = 467
Score = 219 bits (558), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 106/188 (56%), Positives = 136/188 (72%), Gaps = 8/188 (4%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESS-------PLFNAS 53
MA+KWA+NLPSFA LPFRDQVILLEE+WSELF+L AIQW LPL S+ PLF+ +
Sbjct: 279 MAIKWARNLPSFANLPFRDQVILLEETWSELFVLCAIQWCLPLDSSTSTHPSIHPLFDIN 338
Query: 54 EHVAAVPNGKASQTAAD-VRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQ 112
EH++ K + + ++ L +L +FR V VDPAEFACLKA++LF+++ RGLKD
Sbjct: 339 EHMSTSATLKGNLGLLNSIKQLQEILSKFRSVCVDPAEFACLKAIILFRADARGLKDCHH 398
Query: 113 VENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSME 172
VE LQDQAQ+ML QHVR+ HP P RFGRLLLM R + S +++ +FF K + +T ME
Sbjct: 399 VEALQDQAQLMLQQHVRSQHPTHPVRFGRLLLMLPSLRTVSSDKIESLFFQKIIGSTPME 458
Query: 173 KLLCDMYK 180
KLLCDM+K
Sbjct: 459 KLLCDMFK 466
>gi|195155260|ref|XP_002018523.1| GL17753 [Drosophila persimilis]
gi|194114319|gb|EDW36362.1| GL17753 [Drosophila persimilis]
Length = 259
Score = 218 bits (555), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 116/189 (61%), Positives = 138/189 (73%), Gaps = 8/189 (4%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESS-PLFNASEHVAAV 59
MAVKWAKNLPSFA L FRDQVILLEESWSELFLLNAIQW +PL + LF+ +EH +
Sbjct: 71 MAVKWAKNLPSFARLSFRDQVILLEESWSELFLLNAIQWCIPLDPTGCALFSVAEHCNNL 130
Query: 60 PNGKASQT-------AADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQ 112
N T AADVR L+ + +++ V VDPAEFACLKA+VLF+ ETRGLKD Q
Sbjct: 131 ENNANGDTCTTKEELAADVRTLHEIFCKYKAVLVDPAEFACLKAIVLFRPETRGLKDPAQ 190
Query: 113 VENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSME 172
+ENLQDQA VML+QH +T AQ ARFGRLLLM R I S +++ I+F +T+ NT ME
Sbjct: 191 IENLQDQAHVMLSQHTKTQFTAQIARFGRLLLMLPLLRMISSHKIESIYFQRTIGNTPME 250
Query: 173 KLLCDMYKN 181
K+LCDMYKN
Sbjct: 251 KVLCDMYKN 259
>gi|148694040|gb|EDL25987.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_a [Mus
musculus]
gi|148694041|gb|EDL25988.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_a [Mus
musculus]
Length = 322
Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 110/181 (60%), Positives = 135/181 (74%), Gaps = 2/181 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAVKWAKNLP F+ LPFRDQVILLEE+W+ELFLL AIQWSLPL +S PL E +
Sbjct: 144 MAVKWAKNLPVFSNLPFRDQVILLEEAWNELFLLGAIQWSLPL-DSCPLLAPPE-ASGSS 201
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
G+ + +A+ R L + RFR + VDP EFACLKA+VLFK ETRGLKD VE LQDQ+
Sbjct: 202 QGRLALASAETRFLQETISRFRALAVDPTEFACLKALVLFKPETRGLKDPEHVEALQDQS 261
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
QVML+QH + HHP+QP RFG+LLL+ R + + R++ +FF KT+ NT MEKLLCDM+K
Sbjct: 262 QVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFLTAERIELLFFRKTIGNTPMEKLLCDMFK 321
Query: 181 N 181
N
Sbjct: 322 N 322
>gi|221330285|ref|NP_611032.2| hormone receptor 51 [Drosophila melanogaster]
gi|220902230|gb|AAM68536.2| hormone receptor 51 [Drosophila melanogaster]
gi|291490761|gb|ADE06696.1| RT06950p1 [Drosophila melanogaster]
Length = 582
Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 116/189 (61%), Positives = 138/189 (73%), Gaps = 8/189 (4%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESS-PLFNASEHVAAV 59
MAVKWAKNLPSFA L FRDQVILLEESWSELFLLNAIQW +PL + LF+ +EH +
Sbjct: 394 MAVKWAKNLPSFARLSFRDQVILLEESWSELFLLNAIQWCIPLDPTGCALFSVAEHCNNL 453
Query: 60 PNGKASQT-------AADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQ 112
N T AADVR L+ + +++ V VDPAEFACLKA+VLF+ ETRGLKD Q
Sbjct: 454 ENNANGDTCITKEELAADVRTLHEIFCKYKAVLVDPAEFACLKAIVLFRPETRGLKDPAQ 513
Query: 113 VENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSME 172
+ENLQDQA VML+QH +T AQ ARFGRLLLM R I S +++ I+F +T+ NT ME
Sbjct: 514 IENLQDQAHVMLSQHTKTQFTAQIARFGRLLLMLPLLRMISSHKIESIYFQRTIGNTPME 573
Query: 173 KLLCDMYKN 181
K+LCDMYKN
Sbjct: 574 KVLCDMYKN 582
>gi|260802126|ref|XP_002595944.1| hypothetical protein BRAFLDRAFT_235500 [Branchiostoma floridae]
gi|229281196|gb|EEN51956.1| hypothetical protein BRAFLDRAFT_235500 [Branchiostoma floridae]
Length = 369
Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 107/181 (59%), Positives = 133/181 (73%), Gaps = 4/181 (2%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAVKWAKNLP FA LPFRDQVILLEE W ELFLL AIQWS+P ++SPL + +EH +
Sbjct: 193 MAVKWAKNLPVFANLPFRDQVILLEEGWGELFLLCAIQWSMPF-DTSPLVSPTEHAQS-- 249
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
G + T D+R L ++ RF+ + VDP+EFACLKAV LFK +TRGLKD LQVE LQDQA
Sbjct: 250 -GGSGATLLDLRALQEMVDRFKALEVDPSEFACLKAVALFKPDTRGLKDPLQVEKLQDQA 308
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
Q+MLA+H R+ + P RFGRLLL R++ R++ IFF +T+ NT ME+LL DM+K
Sbjct: 309 QLMLAEHTRSQNRNHPIRFGRLLLTLPCLRHVGPDRIETIFFQRTIGNTPMERLLSDMFK 368
Query: 181 N 181
N
Sbjct: 369 N 369
>gi|7305323|ref|NP_038736.1| photoreceptor-specific nuclear receptor [Mus musculus]
gi|10720145|sp|Q9QXZ7.1|NR2E3_MOUSE RecName: Full=Photoreceptor-specific nuclear receptor; AltName:
Full=Nuclear receptor subfamily 2 group E member 3;
AltName: Full=Retina-specific nuclear receptor
gi|6651227|gb|AAF22228.1|AF148129_1 nuclear receptor [Mus musculus]
gi|7770295|gb|AAF69682.1|AF204053_1 photoreceptor specific nuclear receptor [Mus musculus]
gi|17028410|gb|AAH17521.1| Nuclear receptor subfamily 2, group E, member 3 [Mus musculus]
gi|26343545|dbj|BAC35429.1| unnamed protein product [Mus musculus]
gi|148694043|gb|EDL25990.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_c [Mus
musculus]
Length = 395
Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 110/181 (60%), Positives = 135/181 (74%), Gaps = 2/181 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAVKWAKNLP F+ LPFRDQVILLEE+W+ELFLL AIQWSLPL +S PL A +
Sbjct: 217 MAVKWAKNLPVFSNLPFRDQVILLEEAWNELFLLGAIQWSLPL-DSCPLL-APPEASGSS 274
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
G+ + +A+ R L + RFR + VDP EFACLKA+VLFK ETRGLKD VE LQDQ+
Sbjct: 275 QGRLALASAETRFLQETISRFRALAVDPTEFACLKALVLFKPETRGLKDPEHVEALQDQS 334
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
QVML+QH + HHP+QP RFG+LLL+ R + + R++ +FF KT+ NT MEKLLCDM+K
Sbjct: 335 QVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFLTAERIELLFFRKTIGNTPMEKLLCDMFK 394
Query: 181 N 181
N
Sbjct: 395 N 395
>gi|263506139|sp|Q9TTF0.2|NR2E3_BOVIN RecName: Full=Photoreceptor-specific nuclear receptor; AltName:
Full=Nuclear receptor subfamily 2 group E member 3;
AltName: Full=Retina-specific nuclear receptor
Length = 411
Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 112/182 (61%), Positives = 135/182 (74%), Gaps = 2/182 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAVKWAKNLP F+ LPFRDQVILLEE+WSELFLL AIQWSLPL ++ PL E A
Sbjct: 231 MAVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLGAIQWSLPL-DNCPLLALPEASAGGS 289
Query: 61 N-GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
+ G+ +A+ R+L + RFR + VDP EFAC+KA+VLFK ETRGLKD VE LQDQ
Sbjct: 290 SQGRLVLASAETRILQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQ 349
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
+QVML+QH + HHP+Q RFG+LLL+ R I S RV+ +FF KT+ NT MEKLLCDM+
Sbjct: 350 SQVMLSQHSKAHHPSQLVRFGKLLLLLPSLRFISSERVELLFFRKTIGNTPMEKLLCDMF 409
Query: 180 KN 181
KN
Sbjct: 410 KN 411
>gi|354473494|ref|XP_003498970.1| PREDICTED: photoreceptor-specific nuclear receptor [Cricetulus
griseus]
Length = 403
Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 109/181 (60%), Positives = 135/181 (74%), Gaps = 2/181 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAVKWAKNLP F++LPFRDQVILLEE+W+ELFLL AIQWSLPL +S PL A +
Sbjct: 225 MAVKWAKNLPVFSSLPFRDQVILLEEAWNELFLLGAIQWSLPL-DSCPLL-APPEASGGS 282
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+ +A++R L + RFR + VDP EFAC+KA+VLFK ETRGLKD VE LQDQ+
Sbjct: 283 QSRLVLASAEMRFLQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQS 342
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
QVML+QH + HHP+QP RFG+LLL+ R I + R++ +FF KT+ NT MEKLLCDM+K
Sbjct: 343 QVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLCDMFK 402
Query: 181 N 181
N
Sbjct: 403 N 403
>gi|6681852|gb|AAF15392.2|AF107729_1 paraneoplastic retinopathy associated protein De [Bos taurus]
Length = 427
Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 112/182 (61%), Positives = 135/182 (74%), Gaps = 2/182 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAVKWAKNLP F+ LPFRDQVILLEE+WSELFLL AIQWSLPL ++ PL E A
Sbjct: 247 MAVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLGAIQWSLPL-DNCPLLALPEASAGGS 305
Query: 61 N-GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
+ G+ +A+ R+L + RFR + VDP EFAC+KA+VLFK ETRGLKD VE LQDQ
Sbjct: 306 SQGRLVLASAETRILQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQ 365
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
+QVML+QH + HHP+Q RFG+LLL+ R I S RV+ +FF KT+ NT MEKLLCDM+
Sbjct: 366 SQVMLSQHSKAHHPSQLVRFGKLLLLLPSLRFISSERVELLFFRKTIGNTPMEKLLCDMF 425
Query: 180 KN 181
KN
Sbjct: 426 KN 427
>gi|194882843|ref|XP_001975519.1| GG20513 [Drosophila erecta]
gi|190658706|gb|EDV55919.1| GG20513 [Drosophila erecta]
Length = 630
Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 116/189 (61%), Positives = 138/189 (73%), Gaps = 8/189 (4%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESS-PLFNASEHVAAV 59
MAVKWAKNLPSFA L FRDQVILLEESWSELFLLNAIQW +PL + LF+ +EH +
Sbjct: 442 MAVKWAKNLPSFARLSFRDQVILLEESWSELFLLNAIQWCIPLDPTGCALFSVAEHCNNL 501
Query: 60 PNGKASQT-------AADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQ 112
N T AADVR L+ + +++ V VDPAEFACLKA+VLF+ ETRGLKD Q
Sbjct: 502 ENNANGDTCITREELAADVRTLHEIFCKYKAVLVDPAEFACLKAIVLFRPETRGLKDPAQ 561
Query: 113 VENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSME 172
+ENLQDQA VML+QH +T AQ ARFGRLLLM R I S +++ I+F +T+ NT ME
Sbjct: 562 IENLQDQAHVMLSQHTKTQFTAQIARFGRLLLMLPLLRMISSHKIESIYFQRTIGNTPME 621
Query: 173 KLLCDMYKN 181
K+LCDMYKN
Sbjct: 622 KVLCDMYKN 630
>gi|344248427|gb|EGW04531.1| Photoreceptor-specific nuclear receptor [Cricetulus griseus]
Length = 395
Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 109/181 (60%), Positives = 135/181 (74%), Gaps = 2/181 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAVKWAKNLP F++LPFRDQVILLEE+W+ELFLL AIQWSLPL +S PL E +
Sbjct: 217 MAVKWAKNLPVFSSLPFRDQVILLEEAWNELFLLGAIQWSLPL-DSCPLLAPPE-ASGGS 274
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+ +A++R L + RFR + VDP EFAC+KA+VLFK ETRGLKD VE LQDQ+
Sbjct: 275 QSRLVLASAEMRFLQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQS 334
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
QVML+QH + HHP+QP RFG+LLL+ R I + R++ +FF KT+ NT MEKLLCDM+K
Sbjct: 335 QVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLCDMFK 394
Query: 181 N 181
N
Sbjct: 395 N 395
>gi|195402633|ref|XP_002059909.1| GJ14974 [Drosophila virilis]
gi|194140775|gb|EDW57246.1| GJ14974 [Drosophila virilis]
Length = 577
Score = 216 bits (551), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 116/190 (61%), Positives = 140/190 (73%), Gaps = 9/190 (4%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESS-PLFNASEHVAAV 59
MAVKWAKNLPSFA L FRDQVILLEESWSELFLLNAIQW +PL + LF+ +EH +
Sbjct: 388 MAVKWAKNLPSFARLSFRDQVILLEESWSELFLLNAIQWCIPLDPTGCALFSVAEHCNNL 447
Query: 60 PNGKAS--------QTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSL 111
N ++ + AADVR L+ + +++ V VDPAEFACLKA+VLF+ ETRGLKD
Sbjct: 448 ENNASNGDNCVSKEELAADVRTLHEIFCKYKAVLVDPAEFACLKAIVLFRPETRGLKDPA 507
Query: 112 QVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSM 171
Q+ENLQDQA VML+QH +T AQ ARFGRLLLM R I S +++ IFF +T+ NT M
Sbjct: 508 QIENLQDQAHVMLSQHTKTQFTAQIARFGRLLLMLPLLRMINSHKIESIFFQRTIGNTPM 567
Query: 172 EKLLCDMYKN 181
EK+LCDMYKN
Sbjct: 568 EKVLCDMYKN 577
>gi|194754966|ref|XP_001959763.1| GF13031 [Drosophila ananassae]
gi|190621061|gb|EDV36585.1| GF13031 [Drosophila ananassae]
Length = 552
Score = 216 bits (550), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 116/189 (61%), Positives = 138/189 (73%), Gaps = 8/189 (4%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESS-PLFNASEHVAAV 59
MAVKWAKNLPSFA L FRDQVILLEESWSELFLLNAIQW +PL + LF+ +EH +
Sbjct: 364 MAVKWAKNLPSFARLSFRDQVILLEESWSELFLLNAIQWCIPLDPTGCALFSVAEHCNNL 423
Query: 60 PNGKASQT-------AADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQ 112
N T AADVR L+ + +++ V VDPAEFACLKA+VLF+ ETRGLKD Q
Sbjct: 424 ENNANGDTCITKEELAADVRSLHEIFCKYKAVLVDPAEFACLKAIVLFRPETRGLKDPAQ 483
Query: 113 VENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSME 172
+ENLQDQA VML+QH +T AQ ARFGRLLLM R I S +++ I+F +T+ NT ME
Sbjct: 484 IENLQDQAHVMLSQHTKTQFTAQIARFGRLLLMLPLLRMISSHKIEAIYFQRTIGNTPME 543
Query: 173 KLLCDMYKN 181
K+LCDMYKN
Sbjct: 544 KVLCDMYKN 552
>gi|321465568|gb|EFX76568.1| hypothetical protein DAPPUDRAFT_106791 [Daphnia pulex]
Length = 310
Score = 216 bits (549), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 112/185 (60%), Positives = 138/185 (74%), Gaps = 18/185 (9%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASE----HV 56
MAVKWAK+LPSFA LPFRDQVILLEESWSELFL+ AIQ+ LP+ +++PLF+ + H
Sbjct: 140 MAVKWAKSLPSFAGLPFRDQVILLEESWSELFLICAIQFCLPM-DNNPLFSLAHFNQPHS 198
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A + G NGV RFR+V VDPAEFACLKA++LFKSETRGLKD +QVENL
Sbjct: 199 ATLGCG------------NGVT-RFRVVAVDPAEFACLKAIILFKSETRGLKDPIQVENL 245
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
QDQAQVML QH+R P +PARFGRLLL R++ + R++ ++F T+ +T MEK+LC
Sbjct: 246 QDQAQVMLNQHIRNQQPQRPARFGRLLLTLPLLRHVTAHRLEQLYFRHTIGSTPMEKVLC 305
Query: 177 DMYKN 181
DMYKN
Sbjct: 306 DMYKN 310
>gi|348583723|ref|XP_003477622.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Cavia
porcellus]
Length = 603
Score = 215 bits (547), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 108/182 (59%), Positives = 135/182 (74%), Gaps = 2/182 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAVKWAKNLP + LPFRDQVILLEE+W ELFLL AIQWSLPL +S PL +E AA
Sbjct: 423 MAVKWAKNLPVLSNLPFRDQVILLEEAWGELFLLGAIQWSLPL-DSCPLLAPAEASAAGS 481
Query: 61 N-GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
+ G+ + + + R L + RFR + VDP EFAC+KA++LFK ET GLKD VE LQDQ
Sbjct: 482 SQGRLALASVERRFLQETVARFRALAVDPTEFACMKALILFKPETPGLKDPEHVEALQDQ 541
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
+Q+ML+QH + HHP+QP RFG+LLL+ R + S R++H+FF KT+ NT MEKLLCDM+
Sbjct: 542 SQMMLSQHTKAHHPSQPMRFGKLLLLLPSLRFLTSERIEHVFFCKTIGNTPMEKLLCDMF 601
Query: 180 KN 181
KN
Sbjct: 602 KN 603
>gi|432861654|ref|XP_004069672.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Oryzias
latipes]
Length = 416
Score = 213 bits (542), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 103/181 (56%), Positives = 131/181 (72%), Gaps = 2/181 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M+VKW KNLP FA LPFRDQVILLEESWSE+FLL IQWSLP+ +S PL + E ++
Sbjct: 238 MSVKWTKNLPIFAHLPFRDQVILLEESWSEMFLLCVIQWSLPM-DSCPLLSLPE-LSPKQ 295
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
K S +D+++L V RF+ + VDP EFACLKA+VLFK E R LKD QVENLQDQ+
Sbjct: 296 QAKVSPPTSDLQILEEVFNRFKALTVDPTEFACLKAIVLFKPEARSLKDPEQVENLQDQS 355
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
QV+L QH+ + +P Q RFGR+LL+ + SA++ +FF +T+ NT MEKLLCDM+K
Sbjct: 356 QVLLGQHIYSAYPNQSTRFGRMLLLLPSLHFVSSAKIGQLFFQRTIGNTPMEKLLCDMFK 415
Query: 181 N 181
N
Sbjct: 416 N 416
>gi|195426545|ref|XP_002061388.1| GK20892 [Drosophila willistoni]
gi|194157473|gb|EDW72374.1| GK20892 [Drosophila willistoni]
Length = 573
Score = 211 bits (538), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 115/191 (60%), Positives = 138/191 (72%), Gaps = 10/191 (5%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESS-PLFNASEHVAAV 59
MAVKWAKNLPSFA L FRDQVILLEESWSELFLLNAIQW +PL + LF+ +EH +
Sbjct: 383 MAVKWAKNLPSFARLSFRDQVILLEESWSELFLLNAIQWCIPLDPTGCALFSVAEHCNNL 442
Query: 60 PNG---------KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDS 110
N + AADVR L+ + +++ V VDPAEFACLKA+VLF+ ETRGLKD
Sbjct: 443 ENNNNANGETCVSKEELAADVRTLHEIFCKYKAVLVDPAEFACLKAIVLFRPETRGLKDP 502
Query: 111 LQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTS 170
Q+ENLQDQA VML+QH +T AQ ARFGRLLLM R I S +++ I+F +T+ NT
Sbjct: 503 AQIENLQDQAHVMLSQHTKTQFAAQIARFGRLLLMLPLLRMINSHKIESIYFQRTIGNTP 562
Query: 171 MEKLLCDMYKN 181
MEK+LCDMYKN
Sbjct: 563 MEKVLCDMYKN 573
>gi|348505631|ref|XP_003440364.1| PREDICTED: photoreceptor-specific nuclear receptor-like
[Oreochromis niloticus]
Length = 421
Score = 211 bits (536), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 104/182 (57%), Positives = 134/182 (73%), Gaps = 4/182 (2%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M+VKWAKNLP FA LPFRDQVILLEE+WSE+FLL AIQWSLP+ +S PL + + ++P
Sbjct: 243 MSVKWAKNLPVFAHLPFRDQVILLEEAWSEMFLLCAIQWSLPM-DSCPLLSLPD--LSIP 299
Query: 61 N-GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
S AD+++L V RF+ + VDP EFACLKA+VLFK E R LKD QVENLQDQ
Sbjct: 300 QQANISLLTADLQILEEVFSRFKALTVDPTEFACLKAIVLFKPEVRNLKDPEQVENLQDQ 359
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
+QV+L QH+ + +P Q ARFGRL+L+ R + S ++ +FF +T+ +T MEKLLCDM+
Sbjct: 360 SQVLLGQHIHSVYPNQGARFGRLILLLPSLRFVNSEKIAKLFFQRTIGSTPMEKLLCDMF 419
Query: 180 KN 181
KN
Sbjct: 420 KN 421
>gi|195486253|ref|XP_002091427.1| GE13645 [Drosophila yakuba]
gi|194177528|gb|EDW91139.1| GE13645 [Drosophila yakuba]
Length = 654
Score = 208 bits (529), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 112/189 (59%), Positives = 133/189 (70%), Gaps = 13/189 (6%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESS-PLFNASEHVAAV 59
MAVKWAKNLPSFA L FRDQVILLEESWSELFLLNAIQW +PL + LF+ +EH +
Sbjct: 471 MAVKWAKNLPSFARLSFRDQVILLEESWSELFLLNAIQWCIPLDPTGCALFSVAEHCNNL 530
Query: 60 PNGKASQT-------AADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQ 112
N T AADVR L+ + +++ V VDPAEFACLKA+VLF+ ETRGLKD Q
Sbjct: 531 ENNANGDTCTTKEELAADVRTLHEIFCKYKAVLVDPAEFACLKAIVLFRPETRGLKDPAQ 590
Query: 113 VENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSME 172
+ENLQDQ A H +T AQ ARFGRLLLM R I S +++ I+F +T+ NT ME
Sbjct: 591 IENLQDQ-----AHHTKTQFTAQIARFGRLLLMLPLLRIISSHKIESIYFQRTIGNTPME 645
Query: 173 KLLCDMYKN 181
K+LCDMYKN
Sbjct: 646 KVLCDMYKN 654
>gi|195583620|ref|XP_002081615.1| GD11109 [Drosophila simulans]
gi|194193624|gb|EDX07200.1| GD11109 [Drosophila simulans]
Length = 414
Score = 204 bits (519), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 112/189 (59%), Positives = 133/189 (70%), Gaps = 13/189 (6%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESS-PLFNASEHVAAV 59
MAVKWAKNLPSFA L FRDQVILLEESWSELFLLNAIQW +PL + LF+ +EH +
Sbjct: 231 MAVKWAKNLPSFARLSFRDQVILLEESWSELFLLNAIQWCIPLDPTGCALFSVAEHCNNL 290
Query: 60 PNGKASQT-------AADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQ 112
N T AADVR L+ + +++ V VDPAEFACLKA+VLF+ ETRGLKD Q
Sbjct: 291 ENNANGDTCITKEELAADVRTLHEIFCKYKAVLVDPAEFACLKAIVLFRPETRGLKDPAQ 350
Query: 113 VENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSME 172
+ENLQDQ A H +T AQ ARFGRLLLM R I S +++ I+F +T+ NT ME
Sbjct: 351 IENLQDQ-----AHHTKTQFTAQIARFGRLLLMLPLLRMISSHKIESIYFQRTIGNTPME 405
Query: 173 KLLCDMYKN 181
K+LCDMYKN
Sbjct: 406 KVLCDMYKN 414
>gi|195119854|ref|XP_002004444.1| GI19610 [Drosophila mojavensis]
gi|193909512|gb|EDW08379.1| GI19610 [Drosophila mojavensis]
Length = 589
Score = 202 bits (515), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 112/189 (59%), Positives = 133/189 (70%), Gaps = 13/189 (6%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESS-PLFNASEHVAAV 59
MAVKWAKNLPSFA L FRDQVILLEESWSELFLLNAIQW +PL + LF+ +EH +
Sbjct: 406 MAVKWAKNLPSFARLSFRDQVILLEESWSELFLLNAIQWCIPLDPTGCALFSVAEHCNNL 465
Query: 60 PNGKASQT-------AADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQ 112
N + AADVR L+ + +++ V VDPAEFACLKA+VLF+ ETRGLKD Q
Sbjct: 466 ENNANTDNCVSKEELAADVRTLHEIFCKYKAVLVDPAEFACLKAIVLFRPETRGLKDPAQ 525
Query: 113 VENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSME 172
+ENLQDQ A H +T AQ ARFGRLLLM R I S +++ IFF +T+ NT ME
Sbjct: 526 IENLQDQ-----AHHTKTQFAAQIARFGRLLLMLPLLRMINSHKIESIFFQRTIGNTPME 580
Query: 173 KLLCDMYKN 181
K+LCDMYKN
Sbjct: 581 KVLCDMYKN 589
>gi|195027479|ref|XP_001986610.1| GH20427 [Drosophila grimshawi]
gi|193902610|gb|EDW01477.1| GH20427 [Drosophila grimshawi]
Length = 281
Score = 202 bits (514), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 112/189 (59%), Positives = 133/189 (70%), Gaps = 13/189 (6%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESS-PLFNASEHVAAV 59
MAVKWAKNLPSFA L FRDQVILLEESWSELFLLNAIQW +PL + LF+ +EH +
Sbjct: 98 MAVKWAKNLPSFARLSFRDQVILLEESWSELFLLNAIQWCIPLEPTGCALFSVAEHCNNL 157
Query: 60 PNG-------KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQ 112
N + AADVR L+ + +++ V VDPAEFACLKA+VLF+ ETRGLKD Q
Sbjct: 158 ENNANGDNCVTKEELAADVRTLHEIFCKYKAVLVDPAEFACLKAIVLFRPETRGLKDPAQ 217
Query: 113 VENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSME 172
+ENLQDQ A H +T AQ ARFGRLLLM R I S +++ IFF +T+ NT ME
Sbjct: 218 IENLQDQ-----AHHTKTQFTAQIARFGRLLLMLPLLRMINSHKIESIFFQRTIGNTPME 272
Query: 173 KLLCDMYKN 181
K+LCDMYKN
Sbjct: 273 KVLCDMYKN 281
>gi|345794757|ref|XP_544754.3| PREDICTED: photoreceptor-specific nuclear receptor [Canis lupus
familiaris]
Length = 304
Score = 202 bits (513), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 104/168 (61%), Positives = 126/168 (75%), Gaps = 2/168 (1%)
Query: 15 LPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN-GKASQTAADVRV 73
LPFRDQVILLEE+WSELFLL AIQWSLPL +S PL A E AA + G+ + +A+ R+
Sbjct: 138 LPFRDQVILLEEAWSELFLLGAIQWSLPL-DSCPLLAAPEGPAAGSSQGRLALASAESRI 196
Query: 74 LNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHP 133
L + RFR + VDP EFAC+KA+VLF ETRGLKD VE LQDQ+QVML+QH + HHP
Sbjct: 197 LQETISRFRALAVDPTEFACMKALVLFTPETRGLKDPEHVEALQDQSQVMLSQHSKAHHP 256
Query: 134 AQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYKN 181
+QP RFG+LLL+ R I S RV+ +FF KT+ NT MEKLLCDM+KN
Sbjct: 257 SQPVRFGKLLLLLPSLRFITSERVELLFFRKTIGNTPMEKLLCDMFKN 304
>gi|357620179|gb|EHJ72470.1| hypothetical protein KGM_05607 [Danaus plexippus]
Length = 254
Score = 201 bits (510), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 106/181 (58%), Positives = 124/181 (68%), Gaps = 8/181 (4%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAVKWA+NLPSFA L FRDQV LLEE WSELFLLNA+QW PL ++ +EH
Sbjct: 82 MAVKWARNLPSFAGLAFRDQVTLLEEGWSELFLLNAVQWCAPLDAAASALFGTEHDTGAG 141
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+ R L V+ R+R V VDPAEFAC+KA+VLFK ETRGLKD LQ+ENLQDQA
Sbjct: 142 ECR--------RRLRAVVSRYRSVLVDPAEFACMKAIVLFKPETRGLKDPLQIENLQDQA 193
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
QVML H RT H PARFGRLLL+ R + +++ FFAKT+ T MEK+L DMYK
Sbjct: 194 QVMLMTHTRTAHGTAPARFGRLLLLLPLLRLVTPQQLEKEFFAKTIGETPMEKVLADMYK 253
Query: 181 N 181
N
Sbjct: 254 N 254
>gi|198459166|ref|XP_002138651.1| GA25604, partial [Drosophila pseudoobscura pseudoobscura]
gi|198136600|gb|EDY69209.1| GA25604, partial [Drosophila pseudoobscura pseudoobscura]
Length = 275
Score = 196 bits (499), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 112/210 (53%), Positives = 133/210 (63%), Gaps = 34/210 (16%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESS-PLFNASEHVAAV 59
MAVKWAKNLPSFA L FRDQVILLEESWSELFLLNAIQW +PL + LF+ +EH +
Sbjct: 71 MAVKWAKNLPSFARLSFRDQVILLEESWSELFLLNAIQWCIPLDPTGCALFSVAEHCNNL 130
Query: 60 PNGKASQT----------------------------AADVRVLNGVLQRFRLVGVDPAEF 91
N T AADVR L+ + +++ V VDPAEF
Sbjct: 131 ENNANGDTCTTKEEVSLSTIGLRVLVVRNDIVVGQLAADVRTLHEIFCKYKAVLVDPAEF 190
Query: 92 ACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRN 151
ACLKA+VLF+ ETRGLKD Q+ENLQDQ A H +T AQ ARFGRLLLM R
Sbjct: 191 ACLKAIVLFRPETRGLKDPAQIENLQDQ-----AHHTKTQFTAQIARFGRLLLMLPLLRM 245
Query: 152 IPSARVQHIFFAKTVANTSMEKLLCDMYKN 181
I S +++ I+F +T+ NT MEK+LCDMYKN
Sbjct: 246 ISSHKIESIYFQRTIGNTPMEKVLCDMYKN 275
>gi|47209636|emb|CAF93476.1| unnamed protein product [Tetraodon nigroviridis]
Length = 467
Score = 195 bits (495), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 98/162 (60%), Positives = 123/162 (75%), Gaps = 2/162 (1%)
Query: 20 QVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNGKASQTAADVRVLNGVLQ 79
QVILLEE+WSELFLL AIQWSLPL +S PL + + + GK S + D+R+L V
Sbjct: 308 QVILLEEAWSELFLLCAIQWSLPL-DSCPLLSLPDLCPGI-QGKGSYPSLDLRLLQEVFS 365
Query: 80 RFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARF 139
RF+ + VDP EFACLKA+VLFK ETRGLKD QVENLQDQ+QVML QH+R+H+ +QPARF
Sbjct: 366 RFKALAVDPTEFACLKAIVLFKPETRGLKDPEQVENLQDQSQVMLGQHIRSHYSSQPARF 425
Query: 140 GRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYKN 181
G+LLL+ R + S R++ +FF +T+ NT MEKLLCDM+KN
Sbjct: 426 GKLLLLLPSLRFVASERIELLFFHRTIGNTPMEKLLCDMFKN 467
>gi|355778151|gb|EHH63187.1| hypothetical protein EGM_16101, partial [Macaca fascicularis]
Length = 302
Score = 192 bits (489), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 100/170 (58%), Positives = 122/170 (71%), Gaps = 2/170 (1%)
Query: 13 AALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAV-PNGKASQTAADV 71
A L DQVILLEE+WSELFLL AIQWSLPL +S PL E AA G+ + + +
Sbjct: 134 AKLEPEDQVILLEEAWSELFLLGAIQWSLPL-DSCPLLAPPEASAAGGAQGRLTLASMET 192
Query: 72 RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTH 131
RVL + RFR + VDP EFAC+KA+VLFK ETRGLKD VE LQDQ+QVML+QH + H
Sbjct: 193 RVLRETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQSQVMLSQHSKAH 252
Query: 132 HPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYKN 181
HP+QP RFG+LLL+ R I + R++ +FF KT+ NT MEKLLCDM+KN
Sbjct: 253 HPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLCDMFKN 302
>gi|241647785|ref|XP_002409993.1| photoreceptor-specific nuclear receptor, putative [Ixodes
scapularis]
gi|215501485|gb|EEC10979.1| photoreceptor-specific nuclear receptor, putative [Ixodes
scapularis]
Length = 342
Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 104/191 (54%), Positives = 127/191 (66%), Gaps = 19/191 (9%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVA--- 57
MAVKWAKNLPSF+ LPFRDQVILLEE+WSELFLL AIQW LP LE+SPLF+ +EH A
Sbjct: 159 MAVKWAKNLPSFSNLPFRDQVILLEETWSELFLLCAIQWCLP-LEASPLFSPAEHAALAA 217
Query: 58 --AVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETR------GLKD 109
A P KA ADVR+L +L RFR +GVDPAEFACLKA++LFK+ +R G
Sbjct: 218 HPANPGPKAP--LADVRLLQELLARFRAIGVDPAEFACLKAILLFKAASRVSTKLLGSPR 275
Query: 110 SLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANT 169
L V + + V + RFGRLLLM R +P+ RV+ ++F +T+ NT
Sbjct: 276 PLSVHRISLLYRTATNAGVGVYR-----RFGRLLLMLPSLRYVPAERVEALYFQRTIGNT 330
Query: 170 SMEKLLCDMYK 180
MEKLLCDM+K
Sbjct: 331 PMEKLLCDMFK 341
>gi|156376476|ref|XP_001630386.1| predicted protein [Nematostella vectensis]
gi|156217406|gb|EDO38323.1| predicted protein [Nematostella vectensis]
Length = 358
Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 96/182 (52%), Positives = 124/182 (68%), Gaps = 2/182 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASE-HVAAV 59
M+VKWA+N+PSF +LPFRDQVILLEE W ELFLL A QWS+P LE +P+ AS HV
Sbjct: 176 MSVKWARNIPSFMSLPFRDQVILLEEGWRELFLLGASQWSMP-LEIAPILAASGMHVDNT 234
Query: 60 PNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
P K A VR L + +F+ GVD EFACLKA+VLFK GLKD Q+E QDQ
Sbjct: 235 PPEKIVDVMATVRTLQEAVNKFKAFGVDSTEFACLKAIVLFKPAACGLKDPEQIETTQDQ 294
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
AQ+ML +++R+ +P Q ARFGRLLL+ R + + ++ +FF KT+ +E+LL DM+
Sbjct: 295 AQLMLGEYIRSTYPTQVARFGRLLLLLPALRRVSALAIEELFFKKTIGTVPIERLLSDMF 354
Query: 180 KN 181
KN
Sbjct: 355 KN 356
>gi|291232327|ref|XP_002736110.1| PREDICTED: tailless-like [Saccoglossus kowalevskii]
Length = 407
Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 85/181 (46%), Positives = 121/181 (66%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
+ VKW K++PS+ LP+RDQ+ILLEE W +LF+L QWS+P+ E S L A P
Sbjct: 226 ITVKWVKHMPSYQILPYRDQLILLEEGWRDLFMLGLSQWSVPMDEKSILSLAKLSSENTP 285
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
K SQ +VR + ++R + +G+D E+ACLKA+ +FKSET GL+D+ QVE LQDQA
Sbjct: 286 QEKLSQIMTEVRHMQDNVRRLQKMGLDATEYACLKAISIFKSETHGLRDAHQVETLQDQA 345
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
QVML ++R + QP RFG+ LLM R+I S ++ +FF T+ + +E+LLCDM++
Sbjct: 346 QVMLGDYLRHQYARQPVRFGKCLLMLPSLRSISSRTLEMLFFRDTIGSIPIERLLCDMFQ 405
Query: 181 N 181
N
Sbjct: 406 N 406
>gi|293349263|ref|XP_002727107.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Rattus
norvegicus]
Length = 397
Score = 182 bits (462), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 99/183 (54%), Positives = 121/183 (66%), Gaps = 4/183 (2%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAVKWAKNLP F+ LPFRDQVILLEE+W+ELFLL AIQWSLPL +S PL A ++
Sbjct: 217 MAVKWAKNLPVFSNLPFRDQVILLEEAWNELFLLGAIQWSLPL-DSCPLL-APPEASSSS 274
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKA--VVLFKSETRGLKDSLQVENLQD 118
G+ + + G+ F GV P LK F ETRGLKD VE LQD
Sbjct: 275 QGRLALASGKQTKRCGLTNYFWGCGVRPTSERELKGAHCCCFSPETRGLKDPDHVEALQD 334
Query: 119 QAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
Q+QVML+QH + HHP+QP RFG+LLL+ R I + R++ +FF KT+ NT MEKLLCDM
Sbjct: 335 QSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLCDM 394
Query: 179 YKN 181
+KN
Sbjct: 395 FKN 397
>gi|291225515|ref|XP_002732745.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
Length = 405
Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 93/183 (50%), Positives = 126/183 (68%), Gaps = 6/183 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M VKWA+N+PSF LPFRDQ ILLEE W+ELFLL+A QW++PL E L +A ++A P
Sbjct: 226 MTVKWARNIPSFLTLPFRDQAILLEEGWNELFLLSAAQWAIPL-ELGSLLSA---ISAHP 281
Query: 61 NG--KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQD 118
N K AD+R L + RF + VD E+ACLKAVVLFK ETRGL++ +QVE LQD
Sbjct: 282 NNGDKMPCLMADIRTLQDTMSRFNAMQVDATEYACLKAVVLFKPETRGLREMVQVETLQD 341
Query: 119 QAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
QAQ+ML ++ P+Q RFGRLLL+ + + + ++ IFF +T+ + +E+LLCDM
Sbjct: 342 QAQLMLGEYTHARFPSQRVRFGRLLLLLPALKAVSARAIEEIFFRRTIGSIPIERLLCDM 401
Query: 179 YKN 181
+K+
Sbjct: 402 FKS 404
>gi|16797870|gb|AAL29193.1|AF323680_1 nuclear receptor Amtll [Acropora millepora]
Length = 380
Score = 179 bits (453), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 94/181 (51%), Positives = 119/181 (65%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M+VKWA+N+PSF +LPFRDQVILLEE W ELF+L A QWS+PL + L A HV P
Sbjct: 199 MSVKWARNIPSFMSLPFRDQVILLEEGWRELFVLGASQWSMPLEIAPILAAAGMHVDTTP 258
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
A VR+L + +F+ VD E+ACLKA+VLFKS GLKD QVE+ QDQA
Sbjct: 259 PETIVDVMATVRLLQETVNKFKAANVDSTEYACLKAIVLFKSTACGLKDPEQVESTQDQA 318
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
Q+ML ++VR P Q ARFGRLLL+ R I + ++ +FF KT+ +E+LL DM K
Sbjct: 319 QLMLGEYVRAQCPTQLARFGRLLLLLPALRRISTKEIEELFFKKTIGAVPIERLLSDMMK 378
Query: 181 N 181
N
Sbjct: 379 N 379
>gi|7706515|ref|NP_057430.1| photoreceptor-specific nuclear receptor isoform a [Homo sapiens]
gi|6651225|gb|AAF22227.1|AF148128_1 nuclear receptor [Homo sapiens]
gi|119598283|gb|EAW77877.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_b
[Homo sapiens]
gi|325495505|gb|ADZ17358.1| photoreceptor cell-specific nuclear receptor variant 1 [Homo
sapiens]
Length = 367
Score = 179 bits (453), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 89/139 (64%), Positives = 105/139 (75%), Gaps = 2/139 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAA-V 59
MAVKWAKNLP F++LPFRDQVILLEE+WSELFLL AIQWSLP L+S PL E AA
Sbjct: 230 MAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLP-LDSCPLLAPPEASAAGG 288
Query: 60 PNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
G+ + + + RVL + RFR + VDP EFAC+KA+VLFK ETRGLKD VE LQDQ
Sbjct: 289 AQGRLTLASMETRVLQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQ 348
Query: 120 AQVMLAQHVRTHHPAQPAR 138
+QVML+QH + HHP+QP R
Sbjct: 349 SQVMLSQHSKAHHPSQPVR 367
>gi|156376474|ref|XP_001630385.1| predicted protein [Nematostella vectensis]
gi|156217405|gb|EDO38322.1| predicted protein [Nematostella vectensis]
Length = 340
Score = 179 bits (453), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 92/182 (50%), Positives = 124/182 (68%), Gaps = 2/182 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASE-HVAAV 59
M+VKWA+N+PSF LPFRDQV+LLEE W ELF++ AIQW+LP LE +PL A+ HV
Sbjct: 159 MSVKWARNIPSFVNLPFRDQVVLLEEGWRELFIMGAIQWNLP-LEVAPLLAAAGMHVDNT 217
Query: 60 PNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
P K T AD+R L + RFR + V AEFACLKA+VLFK + R L+D QVE QDQ
Sbjct: 218 PAEKIVATMADIRKLQEIGSRFRALQVCEAEFACLKAIVLFKPDLRDLRDPQQVECYQDQ 277
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
AQ+ML +++ Q RFG+LLLM R + + ++ +FF +T+ + ++E LLCDM+
Sbjct: 278 AQIMLGDYIKRQFAGQQVRFGKLLLMLPSLRLVRNKTIEELFFRQTIGSVAIESLLCDMF 337
Query: 180 KN 181
K+
Sbjct: 338 KS 339
>gi|339245569|ref|XP_003378710.1| photoreceptor-specific nuclear receptor [Trichinella spiralis]
gi|316972367|gb|EFV56045.1| photoreceptor-specific nuclear receptor [Trichinella spiralis]
Length = 547
Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/183 (53%), Positives = 119/183 (65%), Gaps = 4/183 (2%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M VKWAK+LPSF AL FRDQVILLEESWS+LFLL QWS+P+ SS L + S V
Sbjct: 367 MVVKWAKSLPSFMALSFRDQVILLEESWSDLFLLTLYQWSMPM-GSSALLSHSSFVQ-FA 424
Query: 61 NGKASQT--AADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQD 118
G S +D+R L +L RFR +DPAEF CLKA+ LF+ E RGLKD Q+E LQD
Sbjct: 425 GGINSNIFRPSDLRYLQDLLARFRSCALDPAEFVCLKAIALFRPEARGLKDPAQIELLQD 484
Query: 119 QAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
QAQ ML QH + P RFGRLLLM R + + +++ +FF + MEK+LCDM
Sbjct: 485 QAQYMLIQHTQISQPNPAQRFGRLLLMLPLLRTVGTEKIEILFFNHGIRCMQMEKILCDM 544
Query: 179 YKN 181
YK+
Sbjct: 545 YKS 547
>gi|426233871|ref|XP_004010932.1| PREDICTED: photoreceptor-specific nuclear receptor [Ovis aries]
Length = 516
Score = 172 bits (436), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 92/181 (50%), Positives = 117/181 (64%), Gaps = 11/181 (6%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAVKWAKNLP F+ LPFRDQV +S L + + W + + +
Sbjct: 347 MAVKWAKNLPVFSNLPFRDQV------YSSAGLASQLGWG-----TVRQPSHLPSPPSSS 395
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
G+ +A+ R+L + RFR + VDP EFAC+KA+VLFK ETRGLKD VE LQDQ+
Sbjct: 396 QGRLVLASAETRILQETVSRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQS 455
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
QVML+QH + HHP+QP RFG+LLL+ R I S RV+ +FF KT+ NT MEKLLCDM+K
Sbjct: 456 QVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERVELLFFRKTIGNTPMEKLLCDMFK 515
Query: 181 N 181
N
Sbjct: 516 N 516
>gi|259013325|ref|NP_001158362.1| tailless [Saccoglossus kowalevskii]
gi|32307797|gb|AAP79295.1| tailless [Saccoglossus kowalevskii]
Length = 361
Score = 172 bits (436), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 85/191 (44%), Positives = 123/191 (64%), Gaps = 15/191 (7%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA----SEHV 56
M+VKWAKN+P+F +LPFRDQ++LLEE W ELF+L A QW + +E PL A +EH
Sbjct: 171 MSVKWAKNVPAFLSLPFRDQLLLLEEGWRELFVLGAAQWQM-CMEIGPLLAAAGLSTEHT 229
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKS-------ETRGLKD 109
K +++R ++ +F+ + VD E+ACLK +++FKS E RG++D
Sbjct: 230 NPE---KIVAIMSEMRTFQEIIAKFKQMQVDATEYACLKGIIIFKSVFPDSPQEIRGVRD 286
Query: 110 SLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANT 169
V LQDQAQ+ L++++ T +P QP RFG+LLLM Q R I + ++ +FF KT+ N
Sbjct: 287 FHGVATLQDQAQLTLSKYIHTKYPTQPFRFGKLLLMLPQLRAIRPSTIEELFFRKTIGNI 346
Query: 170 SMEKLLCDMYK 180
+E+LLCDMYK
Sbjct: 347 PIERLLCDMYK 357
>gi|291232333|ref|XP_002736112.1| PREDICTED: tailless-like [Saccoglossus kowalevskii]
Length = 308
Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 85/196 (43%), Positives = 123/196 (62%), Gaps = 20/196 (10%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA-------- 52
M+VKWAKN+P+F +LPFRDQ++LLEE W ELF+L A QW + +E PL A
Sbjct: 113 MSVKWAKNVPAFLSLPFRDQLLLLEEGWRELFVLGAAQWQM-CMEIGPLLAAAGQLHFRL 171
Query: 53 -SEHVAAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKS-------ET 104
+EH K +++R ++ +F+ + VD E+ACLK +++FKS E
Sbjct: 172 STEHTNP---EKIVAIMSEMRTFQEIIAKFKQMQVDATEYACLKGIIIFKSVFPDSPQEI 228
Query: 105 RGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAK 164
RG++D V LQDQAQ+ L++++ T +P QP RFG+LLLM Q R I + ++ +FF K
Sbjct: 229 RGVRDFHGVATLQDQAQLTLSKYIHTKYPTQPFRFGKLLLMLPQLRAIRPSTIEELFFRK 288
Query: 165 TVANTSMEKLLCDMYK 180
T+ N +E+LLCDMYK
Sbjct: 289 TIGNIPIERLLCDMYK 304
>gi|405966252|gb|EKC31559.1| Nuclear receptor subfamily 2 group C member 2 [Crassostrea gigas]
Length = 622
Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats.
Identities = 88/182 (48%), Positives = 123/182 (67%), Gaps = 3/182 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M+VKWAKN+PSF LPFRDQ ILLEESW ELF+L+A QWSL ++ L +A+ + P
Sbjct: 442 MSVKWAKNIPSFLQLPFRDQAILLEESWCELFVLSAAQWSLN-IDIGFLLSANGYTLDGP 500
Query: 61 N-GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
K + + +R L ++ R + +D E+ACLKA++LFK + +GL+DSLQVE LQDQ
Sbjct: 501 KMEKTTLMSLQLRQLQDIIYRLNGIRLDSTEYACLKALLLFKPDVKGLRDSLQVEALQDQ 560
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
AQ+ML +V ++ RFGRLLL RN+ S V+ IFF +T+ N +E++LCDM+
Sbjct: 561 AQIMLYDYV-SNQKLLKTRFGRLLLQLPALRNVSSRAVEDIFFRRTIGNIPIERILCDMF 619
Query: 180 KN 181
K+
Sbjct: 620 KS 621
>gi|156359518|ref|XP_001624815.1| predicted protein [Nematostella vectensis]
gi|156211616|gb|EDO32715.1| predicted protein [Nematostella vectensis]
Length = 327
Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 84/189 (44%), Positives = 122/189 (64%), Gaps = 9/189 (4%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASE-HVAAV 59
M+V WA+N+P+F LPFRDQ ILLEE WSELF+L++ Q+SLP L+ PL +A+ V
Sbjct: 139 MSVTWARNIPTFLDLPFRDQAILLEEGWSELFVLSSAQFSLP-LDMGPLLSAAGLQVDKA 197
Query: 60 PNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKS-------ETRGLKDSLQ 112
P + AD+R+L ++ RF+ + +D E+ACLKA+VLFK RGL+
Sbjct: 198 PTDRIVAGMADIRLLQNIVTRFKRLQIDSTEYACLKAIVLFKPVLPFFPVNLRGLRAPQL 257
Query: 113 VENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSME 172
VE LQDQAQ ML ++ R+ +P Q RFG+LLLM + + ++ +FF T+ N +E
Sbjct: 258 VERLQDQAQSMLGEYCRSQYPDQQVRFGKLLLMLPSLKTVSPKMIEDLFFRGTLDNVPIE 317
Query: 173 KLLCDMYKN 181
++LCDM+K+
Sbjct: 318 RMLCDMFKS 326
>gi|72099629|ref|XP_789465.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Strongylocentrotus purpuratus]
Length = 457
Score = 170 bits (430), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 89/185 (48%), Positives = 120/185 (64%), Gaps = 6/185 (3%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
+VKWAKN+ F LPFRDQ+ILLEE+W +LFL+ QW++PL ES L + +V
Sbjct: 273 SVKWAKNITCFRLLPFRDQLILLEETWRDLFLMGMCQWAVPL-ESDALLKSLAVSMSVKG 331
Query: 62 GKAS-----QTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
K S + AA VR + + + R + VD EFACLKA+ LFKSETRGL + +VE+L
Sbjct: 332 VKTSAETTAELAAQVRYMKETVAKLRAMKVDFTEFACLKAIALFKSETRGLSEPHRVESL 391
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
QDQAQVML +VR H +QP RFGRLLLM S R + S ++ +FF + + +E+LL
Sbjct: 392 QDQAQVMLGDYVRYAHLSQPPRFGRLLLMLSALRAVSSKFLEKLFFKQIIGEIPIERLLS 451
Query: 177 DMYKN 181
DM++
Sbjct: 452 DMFQT 456
>gi|312078554|ref|XP_003141789.1| hypothetical protein LOAG_06205 [Loa loa]
gi|307763047|gb|EFO22281.1| hypothetical protein LOAG_06205 [Loa loa]
Length = 493
Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 89/179 (49%), Positives = 118/179 (65%), Gaps = 15/179 (8%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
+A+KWAKNLPSFA+L FRDQ+ LL+E+W +LFLL+ QWSLP+ E PL NA +
Sbjct: 328 LAIKWAKNLPSFASLSFRDQLKLLKENWCDLFLLSVFQWSLPM-EKCPLLNALQ------ 380
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+ R LN + R R G+D EFACLKA+VLF+ ETRGLK+ QVE+LQDQA
Sbjct: 381 -----TDPSSFRYLNDLFFRIRTYGIDHGEFACLKALVLFRPETRGLKNLAQVEDLQDQA 435
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
Q LA+H + PARFGRLLL+ R I + +++ +FF T NTS ++++C MY
Sbjct: 436 QQTLARHTMN---SSPARFGRLLLLLPLLRTISAEKIERLFFMATFGNTSFDQIICKMY 491
>gi|351714332|gb|EHB17251.1| Photoreceptor-specific nuclear receptor [Heterocephalus glaber]
Length = 351
Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 82/139 (58%), Positives = 105/139 (75%), Gaps = 2/139 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAVKWAK+LP ++LPFRDQVILLEE+W ELFLL AIQWSLP L+S PL + +E AA
Sbjct: 214 MAVKWAKSLPVLSSLPFRDQVILLEEAWGELFLLGAIQWSLP-LDSCPLLSPAEASAAGS 272
Query: 61 N-GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
+ G+ + + + R L + RF+++ VDP EFAC+KA+VLFK ET GLKD VE LQDQ
Sbjct: 273 SQGRLALASGERRFLQETVARFQVLAVDPTEFACMKALVLFKPETPGLKDPEHVEALQDQ 332
Query: 120 AQVMLAQHVRTHHPAQPAR 138
+Q+ML+QH + HHP+QP R
Sbjct: 333 SQMMLSQHSKAHHPSQPVR 351
>gi|324510528|gb|ADY44403.1| Photoreceptor-specific nuclear receptor [Ascaris suum]
Length = 471
Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 91/181 (50%), Positives = 116/181 (64%), Gaps = 14/181 (7%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MA+KWAKNLPSF L FRDQVILLEE W +LFLL+ QWSLP +E PL ++ ++
Sbjct: 305 MAIKWAKNLPSFTLLSFRDQVILLEEGWCDLFLLSVFQWSLP-MEKCPLLTSTLPLST-- 361
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
NG +R L + R R +D EFACLKA+VLF+ ETRGLKD VE LQDQA
Sbjct: 362 NG--------LRYLQDLFLRIRNHNIDQGEFACLKALVLFRPETRGLKDFAHVEELQDQA 413
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
Q MLA+H + P RFGRLLL+ R + + +++ +FF T N S+EK++C MYK
Sbjct: 414 QQMLARHSMA---SGPTRFGRLLLLLPLLRTVGADKIEKMFFEATFGNMSIEKMICKMYK 470
Query: 181 N 181
Sbjct: 471 G 471
>gi|170586218|ref|XP_001897876.1| photoreceptor-specific nuclear receptor [Brugia malayi]
gi|158594271|gb|EDP32855.1| photoreceptor-specific nuclear receptor, putative [Brugia malayi]
Length = 486
Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 85/179 (47%), Positives = 118/179 (65%), Gaps = 15/179 (8%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
+A+KWAKNLPSFA+L RDQ+ LL+E+W +LFLL+ QWSLP+ + PL N +
Sbjct: 321 LAIKWAKNLPSFASLSLRDQLKLLKENWCDLFLLSVFQWSLPM-DKCPLLNTLQ------ 373
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+ R LN + R R G+D EFACLKA+VLF+ ETRGLK+ +Q+E+LQDQA
Sbjct: 374 -----TDPSSFRYLNDLFFRIRSYGIDHGEFACLKAIVLFRPETRGLKNLVQIEDLQDQA 428
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
Q LA+H + PARFGRLLL+ R I + +++ +FF T NTS+++++C MY
Sbjct: 429 QQTLAKHTMN---SSPARFGRLLLLLPLLRTISAEKIERMFFMATFGNTSIDQIICKMY 484
>gi|443688970|gb|ELT91492.1| hypothetical protein CAPTEDRAFT_53417, partial [Capitella teleta]
Length = 390
Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 87/200 (43%), Positives = 120/200 (60%), Gaps = 19/200 (9%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M+VKWA+N+PSF LPFRDQ ILLEESWSELF+L+A QWSLPL +S L P
Sbjct: 190 MSVKWARNIPSFLQLPFRDQAILLEESWSELFILSAAQWSLPLDPNSLLSANGVANDNHP 249
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK------------------- 101
+ + A +R + ++ RF + VD E ACLKA+VLFK
Sbjct: 250 SDTPAAMMAQIRAMKDIVARFNALRVDATECACLKALVLFKAGRHLVVFGSIISVTKLPS 309
Query: 102 SETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIF 161
SE L+D QVE+LQDQAQ+ML ++ +P+ RFG+L+L+ + I ++ +F
Sbjct: 310 SELPELRDCSQVESLQDQAQLMLRDYIFQQYPSNKFRFGKLILLLPALKTISPRTLERLF 369
Query: 162 FAKTVANTSMEKLLCDMYKN 181
F KT+ N +E+LLCDM+K+
Sbjct: 370 FGKTIGNVPVERLLCDMFKS 389
>gi|443724903|gb|ELU12704.1| hypothetical protein CAPTEDRAFT_226190 [Capitella teleta]
Length = 393
Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 123/192 (64%), Gaps = 12/192 (6%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNAS-----EH 55
M+VKWAKN+P+F +LPFRDQ +LLEE W ELF+L A Q+ +P+ + +PL ++ +
Sbjct: 200 MSVKWAKNVPAFLSLPFRDQTLLLEEGWRELFVLGAAQFQMPI-DPAPLLASAGISSPDK 258
Query: 56 VAAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK------SETRGLKD 109
+ + ++R L ++ +F+ + VD E+ACLK +V+FK SE R L+D
Sbjct: 259 SPSSSSDSTVDVVGEIRALQDIIAKFKAMQVDATEYACLKGIVIFKTALSGASENRSLRD 318
Query: 110 SLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANT 169
+ LQDQAQ+ L +++++ +P QP RFG+LLLM Q R+I ++ +FF KT+ N
Sbjct: 319 VHTIVALQDQAQLTLGKYIQSSYPTQPFRFGKLLLMLPQLRSISGQTIEELFFKKTIGNI 378
Query: 170 SMEKLLCDMYKN 181
+E+L+ DMYK+
Sbjct: 379 PIERLMVDMYKS 390
>gi|405978560|gb|EKC42940.1| Nuclear receptor subfamily 2 group E member 1 [Crassostrea gigas]
Length = 380
Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 81/190 (42%), Positives = 119/190 (62%), Gaps = 10/190 (5%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFN-ASEHVAAV 59
M+VKWAKN+P+F LPFRDQV+LLEE W ELF+L A Q+ +P +E+ PL A +
Sbjct: 189 MSVKWAKNVPAFLGLPFRDQVMLLEEGWRELFVLGAAQFQMP-VEAGPLLAVAGLNTEDA 247
Query: 60 PNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK--------SETRGLKDSL 111
P K ++R L ++ +F+ + VDP EFACLK +VLFK S+ + L+D
Sbjct: 248 PAEKVVSFMTEIRALQEIISKFKSLQVDPTEFACLKGIVLFKTAFGNSQNSDEKSLQDIH 307
Query: 112 QVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSM 171
V LQDQAQ+ L+++++ +P QP RFG+LLL + + + +FF KT+ N +
Sbjct: 308 TVAGLQDQAQLTLSKYIQATYPTQPFRFGKLLLSIPTLKTVCGNTIAELFFRKTIGNIPI 367
Query: 172 EKLLCDMYKN 181
E+LL DM+K+
Sbjct: 368 ERLLIDMFKS 377
>gi|156389440|ref|XP_001634999.1| predicted protein [Nematostella vectensis]
gi|156222088|gb|EDO42936.1| predicted protein [Nematostella vectensis]
Length = 364
Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 85/186 (45%), Positives = 122/186 (65%), Gaps = 6/186 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNAS--EHVAA 58
M VKW +N+P+F LPFRDQ IL+EESWSELF+L+ QW + ++ S L +A+ + +
Sbjct: 179 MTVKWVRNIPTFLDLPFRDQAILIEESWSELFILSLSQWDM-AVDLSSLVSAAYPQQMGL 237
Query: 59 VPNGKASQTA---ADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVEN 115
P K+ +T +D+R L V+ R R VD E+ACLKA+VLFK + RGL+ VE
Sbjct: 238 SPGHKSDRTPGSMSDIRNLQTVVSRLRTASVDQTEYACLKAIVLFKPDIRGLRLWSHVEQ 297
Query: 116 LQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLL 175
LQDQAQ ML ++ H+P Q +RFG+LLL ++IP ++ +FF+ T+ N ME+LL
Sbjct: 298 LQDQAQCMLGEYELQHYPDQVSRFGKLLLSLPSLKSIPPKAIERLFFSGTLDNIPMERLL 357
Query: 176 CDMYKN 181
DM+K+
Sbjct: 358 ADMFKS 363
>gi|115679027|ref|XP_792757.2| PREDICTED: nuclear receptor subfamily 2 group E member 1-like,
partial [Strongylocentrotus purpuratus]
Length = 297
Score = 158 bits (399), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 112/181 (61%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M+++W KN+P+F LP+ DQ+ LLEE W ELF+L A QW + + + +A P
Sbjct: 113 MSIRWVKNVPAFIGLPYSDQLTLLEEGWRELFILGAAQWQMTVDGPGLMASAGMKPDTTP 172
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
K + ++++RVL ++ +FR + VD EFACLK +V+FK++ G+K++ V LQDQ+
Sbjct: 173 AEKLAAISSELRVLQELIAKFRQLNVDDTEFACLKGIVIFKTDISGIKETSSVVTLQDQS 232
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
Q+ L++++ H QP RFG+LLL+ R I ++ IFF K V +T LL D+YK
Sbjct: 233 QLALSKYITVRHQTQPYRFGKLLLLLPSVRAIRPTTLEQIFFWKAVGSTPFHTLLTDLYK 292
Query: 181 N 181
Sbjct: 293 K 293
>gi|390341307|ref|XP_794533.3| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Strongylocentrotus purpuratus]
Length = 410
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 112/181 (61%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M+++W KN+P+F LP+ DQ+ LLEE W ELF+L A QW + + + +A P
Sbjct: 226 MSIRWVKNVPAFIGLPYSDQLTLLEEGWRELFILGAAQWQMTVDGPGLMASAGMKPDTTP 285
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
K + ++++RVL ++ +FR + VD EFACLK +V+FK++ G+K++ V LQDQ+
Sbjct: 286 AEKLAAISSELRVLQELIAKFRQLNVDDTEFACLKGIVIFKTDISGIKETSSVVTLQDQS 345
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
Q+ L++++ H QP RFG+LLL+ R I ++ IFF K V +T LL D+YK
Sbjct: 346 QLALSKYITVRHQTQPYRFGKLLLLLPSVRAIRPTTLEQIFFWKAVGSTPFHTLLTDLYK 405
Query: 181 N 181
Sbjct: 406 K 406
>gi|158253732|gb|AAI54181.1| Zgc:103631 protein [Danio rerio]
Length = 344
Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 76/120 (63%), Positives = 94/120 (78%)
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
GK S +A+DVRVL V RF+ + VDP EFACLKA+VLFK ETRGLKD QVENLQDQ+Q
Sbjct: 225 GKGSPSASDVRVLQEVFSRFKPLQVDPTEFACLKAIVLFKPETRGLKDPEQVENLQDQSQ 284
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYKN 181
V+LAQH+ T +P+Q ARFGRLLL+ + S R++H+FF +T+ NT MEKLLCDM+KN
Sbjct: 285 VLLAQHIHTLYPSQVARFGRLLLLLPSLHFVSSERIEHLFFQRTIGNTPMEKLLCDMFKN 344
>gi|260828845|ref|XP_002609373.1| hypothetical protein BRAFLDRAFT_236186 [Branchiostoma floridae]
gi|229294729|gb|EEN65383.1| hypothetical protein BRAFLDRAFT_236186 [Branchiostoma floridae]
Length = 336
Score = 155 bits (391), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 86/186 (46%), Positives = 127/186 (68%), Gaps = 5/186 (2%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAV- 59
+ VKWA+N+PSF LPFRDQ ILLEE+W+ELF+L+A QW++P+ S L A+ A+
Sbjct: 150 IVVKWARNIPSFLQLPFRDQAILLEEAWNELFVLSAAQWAMPIDPGSLLTAATSSPASAD 209
Query: 60 ----PNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVEN 115
+ ++S AD+R L V RF+ VDP E+ACLKA+VLFKS+ RGL+D+ QV+
Sbjct: 210 RVIQSSEQSSLLMADIRGLRDVTSRFQEAQVDPTEYACLKAIVLFKSDARGLRDAGQVQA 269
Query: 116 LQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLL 175
+QDQAQ+ML +++ + + RFGRLLL+ R + + ++ +FF T+ N +E+LL
Sbjct: 270 VQDQAQIMLGEYIASKNSEDKVRFGRLLLLLPALRGVRARGLEELFFRPTIGNIPIERLL 329
Query: 176 CDMYKN 181
CDM+K+
Sbjct: 330 CDMFKS 335
>gi|321478244|gb|EFX89201.1| tailless-like protein [Daphnia pulex]
Length = 337
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 78/181 (43%), Positives = 121/181 (66%), Gaps = 3/181 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M V+WAK++P+F LP RDQ+ILLEESW ELF+L A Q++LP+ E+ L A +++ P
Sbjct: 157 MNVRWAKSVPAFTTLPSRDQIILLEESWRELFVLGAAQFTLPI-EAGTLMTAL-GLSSSP 214
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+ ++++ + +F+ + VD E+ACL+AV+LFK+ GL+D NLQDQA
Sbjct: 215 TERQLGLLSEIKAFQETVAKFKQMNVDATEYACLRAVILFKTSA-GLRDIPSAVNLQDQA 273
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
Q+ L+++V T +P QP RFGRLLL+ R I + ++ +FF KT+ N +E+++ DMYK
Sbjct: 274 QLTLSRYVSTAYPNQPLRFGRLLLLLPALRTIAPSTIEELFFRKTIGNIPIERIISDMYK 333
Query: 181 N 181
+
Sbjct: 334 S 334
>gi|328696467|ref|XP_003240033.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Acyrthosiphon pisum]
Length = 459
Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 113/179 (63%), Gaps = 2/179 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAV+W + L F L DQ++LL+ESW ELFLL+ QWS+P + SPL N+ + +P
Sbjct: 276 MAVRWVRCLAPFQTLSKHDQLLLLQESWKELFLLHLAQWSIPW-DLSPLLNSEKARERLP 334
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
++ +++++ +L RFR + D +E C+KAV+LF ET GL D+ VE LQDQA
Sbjct: 335 -ADDTKVNNEMKIIQEILARFRQLSPDGSECGCMKAVILFTPETPGLIDAQPVEMLQDQA 393
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
Q +L +VR + QP RFGRLLLM R + A ++ +FF +T+ + +++LL DMY
Sbjct: 394 QCILGDYVRGRYSRQPTRFGRLLLMLPNLRAVRQATIERLFFKETIGDIPIQRLLGDMY 452
>gi|156389667|ref|XP_001635112.1| predicted protein [Nematostella vectensis]
gi|156222202|gb|EDO43049.1| predicted protein [Nematostella vectensis]
Length = 355
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 77/181 (42%), Positives = 112/181 (61%), Gaps = 6/181 (3%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
++++A+N+P F LPFRDQ+ILLEE W ELFLL+A W+LPL +S L V +
Sbjct: 178 SIRFARNVPCFTRLPFRDQIILLEEGWKELFLLDAAYWALPLEIASLLA-----VTGGCH 232
Query: 62 GKA-SQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
G + A+++++L +L R R +D E ACLKA+VLF+ ET+GLKDS QV+ +QD
Sbjct: 233 GDSYRHKASEIKLLQELLARLRSFQMDLNELACLKAIVLFRPETKGLKDSDQVDKIQDHI 292
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
Q++LA H T HP P+RFG+LLL S ++ ++ + F KT E +L +
Sbjct: 293 QLLLAHHTMTKHPTHPSRFGKLLLSISPLHSLAEKPIEDVLFRKTDDKDIFESVLSQLMD 352
Query: 181 N 181
N
Sbjct: 353 N 353
>gi|405978561|gb|EKC42941.1| Nuclear receptor subfamily 2 group E member 1 [Crassostrea gigas]
Length = 388
Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 125/190 (65%), Gaps = 10/190 (5%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNAS--EHVAA 58
M +KW K++P+F LP RDQ++L+EESW +LF+L+ Q+ LP+ + L AS +
Sbjct: 197 MTIKWTKSIPAFVGLPNRDQLVLIEESWRDLFILSLAQFRLPI-QPHVLITASGVTSDSK 255
Query: 59 VPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKS-------ETRGLKDSL 111
+ + + S ++R L+ V+ +F+L+ VDP E+ CLKA+V+FK+ E + L+DS
Sbjct: 256 MTSERMSACMLEIRALHDVIDKFKLINVDPTEYTCLKAIVIFKTALRNPVHEMKTLRDSH 315
Query: 112 QVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSM 171
V LQDQAQV L++++ + +P+QP RFG+LLL+ + + S ++ IFF +T+ + +
Sbjct: 316 AVALLQDQAQVTLSKYIESTYPSQPFRFGKLLLLLPLLQTVSSKVIEDIFFKRTIGHVPI 375
Query: 172 EKLLCDMYKN 181
+KL+ DM+K+
Sbjct: 376 DKLIVDMFKS 385
>gi|57525699|ref|NP_001003608.1| nuclear receptor subfamily 2 group E member 1 [Danio rerio]
gi|50418146|gb|AAH77146.1| Nuclear receptor subfamily 2, group E, member 1 [Danio rerio]
gi|116517486|gb|ABJ99095.1| nuclear receptor subfamily 2 group E member 1 [Danio rerio]
Length = 396
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 120/188 (63%), Gaps = 7/188 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M++KWAK++P+F+ LP DQ+ILLE++W ELF+L QW++P+ S+ L + +
Sbjct: 206 MSIKWAKSVPAFSTLPLPDQLILLEDAWRELFVLGIAQWAIPVDSSTLLAVSGMNTENTD 265
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK-------SETRGLKDSLQV 113
+ + ++ ++++ L V+ RFR + +D EFACLK +V FK SE R +++ +
Sbjct: 266 SQRLNKIISEIQALQEVVTRFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNASAI 325
Query: 114 ENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEK 173
LQD+AQ+ L ++ T +P QP RFG+LLL+ R++ + ++ +FF KT+ N + +
Sbjct: 326 AALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSVGPSTIEEVFFKKTIGNVPITR 385
Query: 174 LLCDMYKN 181
LL DMYK+
Sbjct: 386 LLSDMYKS 393
>gi|348524799|ref|XP_003449910.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
isoform 1 [Oreochromis niloticus]
Length = 396
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 120/188 (63%), Gaps = 7/188 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M++KWAK++P+F+ LP DQ+ILLE++W ELF+L QW++P+ ++ L + +
Sbjct: 206 MSIKWAKSVPAFSTLPLSDQLILLEDAWRELFVLGIAQWAIPVDSTTLLAVSGMNTENTE 265
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK-------SETRGLKDSLQV 113
+ + ++ ++++ L V+ RFR + +D EFACLK +V FK +E R +++ +
Sbjct: 266 SQRMNKIMSEIQALQEVVTRFRQMRLDATEFACLKCIVTFKAVPTHGSTELRSFRNASAI 325
Query: 114 ENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEK 173
LQD+AQ+ L ++ T +P QP RFG+LLL+ R++ + ++ +FF KT+ N + +
Sbjct: 326 AALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSVSPSTIEEVFFKKTIGNVPITR 385
Query: 174 LLCDMYKN 181
LL DMYK+
Sbjct: 386 LLSDMYKS 393
>gi|91077386|ref|XP_975255.1| PREDICTED: similar to Dissatisfaction (Dsf) [Tribolium castaneum]
gi|270002823|gb|EEZ99270.1| dissatisfaction [Tribolium castaneum]
Length = 483
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/179 (43%), Positives = 108/179 (60%), Gaps = 3/179 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAV+W + L F L DQ++LL+ESW ELFLL+ QWS+P + S L + +P
Sbjct: 298 MAVRWVRCLAPFQTLSKHDQLLLLQESWKELFLLHLAQWSVPW-DLSALLGCPQARERLP 356
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
TA +++ + ++ RFR + D +E C+KA++LF ET GL D VE LQDQA
Sbjct: 357 AD--IHTATEIKTIQEIMCRFRQISPDGSECGCMKAIILFTPETAGLCDVQPVEMLQDQA 414
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
Q +L +VRT +P QP RFGRLLL+ R I S V+ +FF +T+ + +LL DMY
Sbjct: 415 QCILGDYVRTRYPRQPTRFGRLLLLVPSLRAIRSLTVELLFFKETIGEIPITQLLGDMY 473
>gi|348524801|ref|XP_003449911.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
isoform 2 [Oreochromis niloticus]
Length = 385
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 120/188 (63%), Gaps = 7/188 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M++KWAK++P+F+ LP DQ+ILLE++W ELF+L QW++P+ ++ L + +
Sbjct: 195 MSIKWAKSVPAFSTLPLSDQLILLEDAWRELFVLGIAQWAIPVDSTTLLAVSGMNTENTE 254
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK-------SETRGLKDSLQV 113
+ + ++ ++++ L V+ RFR + +D EFACLK +V FK +E R +++ +
Sbjct: 255 SQRMNKIMSEIQALQEVVTRFRQMRLDATEFACLKCIVTFKAVPTHGSTELRSFRNASAI 314
Query: 114 ENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEK 173
LQD+AQ+ L ++ T +P QP RFG+LLL+ R++ + ++ +FF KT+ N + +
Sbjct: 315 AALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSVSPSTIEEVFFKKTIGNVPITR 374
Query: 174 LLCDMYKN 181
LL DMYK+
Sbjct: 375 LLSDMYKS 382
>gi|410916893|ref|XP_003971921.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
isoform 2 [Takifugu rubripes]
gi|21538834|gb|AAM61763.1|AF461063_2 nuclear receptor 2E1 [Takifugu rubripes]
Length = 396
Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 119/188 (63%), Gaps = 7/188 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M++KWAK++P+F+ LP DQ+ILLE++W ELF+L QW++P+ ++ L + +
Sbjct: 206 MSIKWAKSVPAFSTLPLSDQLILLEDAWRELFVLGIAQWAIPVDPTTLLAVSGMNTENTE 265
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK-------SETRGLKDSLQV 113
+ + ++ ++++ L V+ RFR + +D EFACLK +V FK +E R +++ +
Sbjct: 266 SQRMTKIMSEIQALQEVVTRFRQMRLDATEFACLKCIVTFKAVPTQGNAEIRSFRNASAI 325
Query: 114 ENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEK 173
LQD+AQ+ L ++ T +P QP RFG+LLL+ +I + ++ +FF KT+ N + +
Sbjct: 326 AALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPSLHSISPSTIEEVFFKKTIGNVPITR 385
Query: 174 LLCDMYKN 181
LL DMYK+
Sbjct: 386 LLSDMYKS 393
>gi|242024443|ref|XP_002432637.1| Orphan nuclear receptor NR6A1, putative [Pediculus humanus
corporis]
gi|212518107|gb|EEB19899.1| Orphan nuclear receptor NR6A1, putative [Pediculus humanus
corporis]
Length = 438
Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 75/178 (42%), Positives = 111/178 (62%), Gaps = 3/178 (1%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+W ++L F L DQ++LL+ESW ELFLL QWS+P + + L N+S+ +P
Sbjct: 261 AVRWVRSLGPFQTLSRHDQLLLLQESWKELFLLYLAQWSIPW-DLTTLLNSSKARDRLPQ 319
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ TA +++ + ++ RFR + D +E C+KAV+LF ET GL D VE LQDQAQ
Sbjct: 320 DEI--TANEIKTIQELIGRFRQLSPDLSECGCMKAVILFTPETAGLCDVQPVEMLQDQAQ 377
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
+L ++R +P QP RFGRLLL+ R+I V+ +FF +T+ +++LL DMY
Sbjct: 378 CILGDYIRNRYPRQPTRFGRLLLILPNLRSIRQLTVEQLFFKETIGEIPIQRLLGDMY 435
>gi|410916891|ref|XP_003971920.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
isoform 1 [Takifugu rubripes]
Length = 385
Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 119/188 (63%), Gaps = 7/188 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M++KWAK++P+F+ LP DQ+ILLE++W ELF+L QW++P+ ++ L + +
Sbjct: 195 MSIKWAKSVPAFSTLPLSDQLILLEDAWRELFVLGIAQWAIPVDPTTLLAVSGMNTENTE 254
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK-------SETRGLKDSLQV 113
+ + ++ ++++ L V+ RFR + +D EFACLK +V FK +E R +++ +
Sbjct: 255 SQRMTKIMSEIQALQEVVTRFRQMRLDATEFACLKCIVTFKAVPTQGNAEIRSFRNASAI 314
Query: 114 ENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEK 173
LQD+AQ+ L ++ T +P QP RFG+LLL+ +I + ++ +FF KT+ N + +
Sbjct: 315 AALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPSLHSISPSTIEEVFFKKTIGNVPITR 374
Query: 174 LLCDMYKN 181
LL DMYK+
Sbjct: 375 LLSDMYKS 382
>gi|391338722|ref|XP_003743704.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like
[Metaseiulus occidentalis]
Length = 394
Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 110/177 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
A+ WA+N+P FA L DQV LL ++WSELF+LNA Q S+PL ++ L + H A +
Sbjct: 204 AIDWARNIPFFADLQLTDQVALLRQAWSELFVLNASQCSMPLHVATLLAASGLHAAPMAA 263
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + +D E++CLKA+VLF ++ GL D QVE+LQ++ Q
Sbjct: 264 DRVVAFMDHIRIFQEQVEKLKALHIDGPEYSCLKAIVLFTTDACGLSDVTQVESLQEKTQ 323
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ R +P QP+RFG+LLL R + S ++H+FF + V TS+E L+ DM
Sbjct: 324 SSLEEYCRAQYPQQPSRFGKLLLRLPSLRTVSSQTIEHLFFVRLVGKTSIETLIRDM 380
>gi|126310401|ref|XP_001368385.1| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Monodelphis domestica]
Length = 385
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 120/188 (63%), Gaps = 7/188 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M++KWAK++P+F+ L +DQ++LLE++W ELF+L QW++P+ ++ L + +
Sbjct: 195 MSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGENTD 254
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK-------SETRGLKDSLQV 113
+ K S+ ++++ L V+ RFR + +D EFACLK +V FK SE R +++ +
Sbjct: 255 SQKLSKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAI 314
Query: 114 ENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEK 173
LQD+AQ+ L ++ T +P QP RFG+LLL+ R+I + ++ +FF KT+ N + +
Sbjct: 315 AALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITR 374
Query: 174 LLCDMYKN 181
LL DMYK+
Sbjct: 375 LLSDMYKS 382
>gi|395534716|ref|XP_003769385.1| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Sarcophilus harrisii]
Length = 385
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 120/188 (63%), Gaps = 7/188 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M++KWAK++P+F+ L +DQ++LLE++W ELF+L QW++P+ ++ L + +
Sbjct: 195 MSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGENTD 254
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK-------SETRGLKDSLQV 113
+ K S+ ++++ L V+ RFR + +D EFACLK +V FK SE R +++ +
Sbjct: 255 SQKLSKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAI 314
Query: 114 ENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEK 173
LQD+AQ+ L ++ T +P QP RFG+LLL+ R+I + ++ +FF KT+ N + +
Sbjct: 315 AALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITR 374
Query: 174 LLCDMYKN 181
LL DMYK+
Sbjct: 375 LLSDMYKS 382
>gi|169409578|gb|ACA57920.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Callicebus moloch]
Length = 385
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 120/188 (63%), Gaps = 7/188 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M++KWAK++P+F+ L +DQ++LLE++W ELF+L QW++P+ ++ L + +
Sbjct: 195 MSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTD 254
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK-------SETRGLKDSLQV 113
+ K S+ ++++ L V+ RFR + +D EFACLK +V FK SE R +++ +
Sbjct: 255 SQKLSKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAI 314
Query: 114 ENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEK 173
LQD+AQ+ L ++ T +P QP RFG+LLL+ R+I + ++ +FF KT+ N + +
Sbjct: 315 AALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITR 374
Query: 174 LLCDMYKN 181
LL DMYK+
Sbjct: 375 LLSDMYKS 382
>gi|22726205|ref|NP_689415.1| nuclear receptor subfamily 2 group E member 1 [Mus musculus]
gi|6094489|sp|Q64104.1|NR2E1_MOUSE RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll; Short=mTll
gi|2143507|pir||I53158 orphan nuclear receptor homolog - mouse
gi|998678|gb|AAB34090.1| orphan nuclear receptor homolog [Mus sp.]
gi|21668101|gb|AAM74229.1| nuclear receptor 2E1 [Mus musculus]
gi|34849469|gb|AAH57104.1| Nuclear receptor subfamily 2, group E, member 1 [Mus musculus]
gi|74205430|dbj|BAE21029.1| unnamed protein product [Mus musculus]
gi|148673056|gb|EDL05003.1| nuclear receptor subfamily 2, group E, member 1 [Mus musculus]
Length = 385
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 120/188 (63%), Gaps = 7/188 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M++KWAK++P+F+ L +DQ++LLE++W ELF+L QW++P+ ++ L + +
Sbjct: 195 MSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNTDNTD 254
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK-------SETRGLKDSLQV 113
+ K ++ ++++ L V+ RFR + +D EFACLK +V FK SE R +++ +
Sbjct: 255 SQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAI 314
Query: 114 ENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEK 173
LQD+AQ+ L ++ T +P QP RFG+LLL+ R+I + ++ +FF KT+ N + +
Sbjct: 315 AALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITR 374
Query: 174 LLCDMYKN 181
LL DMYK+
Sbjct: 375 LLSDMYKS 382
>gi|147904762|ref|NP_001079280.1| nuclear receptor subfamily 2 group E member 1 [Xenopus laevis]
gi|6094490|sp|P70052.1|NR2E1_XENLA RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll; Short=xTLL
gi|1527203|gb|AAB07732.1| orphan nuclear receptor XTLL [Xenopus laevis]
Length = 386
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 120/189 (63%), Gaps = 8/189 (4%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M++KWAK++P+F+ L +DQ++LLE++W ELF+L QW++P+ S+ L + +
Sbjct: 195 MSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDASTLLAVSGMNNENTE 254
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK--------SETRGLKDSLQ 112
+ K ++ ++++ L V+ RFR + +D EFACLK +V FK SE R +++
Sbjct: 255 SPKLNKIISEIQALQDVVSRFRQLRLDATEFACLKCIVTFKAGVSTHSGSELRNFRNAAA 314
Query: 113 VENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSME 172
+ LQD+AQ+ L ++ T +P QP RFG+LLL+ R+I + ++ +FF KT+ N +
Sbjct: 315 ISALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSINPSTIEEVFFKKTIGNVPIT 374
Query: 173 KLLCDMYKN 181
++L DMYK+
Sbjct: 375 RVLSDMYKS 383
>gi|157278483|ref|NP_001098343.1| nuclear receptor subfamily 2 group E member 1 [Oryzias latipes]
gi|9910805|sp|Q9YGL3.1|NR2E1_ORYLA RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll
gi|4468637|emb|CAB38085.1| tailless [Oryzias latipes]
Length = 396
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 119/188 (63%), Gaps = 7/188 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M++KWAK++P+F+ LP DQ+ILLE++W ELF+L QW++P+ ++ L + + +
Sbjct: 206 MSIKWAKSVPAFSTLPLSDQLILLEDAWRELFVLGIAQWAIPVDSTTLLAVSGLNSENME 265
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKS-------ETRGLKDSLQV 113
+ ++ A+++ L V+ RFR + +D EFACLK +V FK+ E R +++ +
Sbjct: 266 AQRMNKIMAEIQALQEVVTRFRQMRLDATEFACLKCIVTFKAVPTQGSAELRAFRNASAI 325
Query: 114 ENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEK 173
LQD+AQ+ L ++ T +P QP RFG+LLL+ R++ + ++ +FF K + N + +
Sbjct: 326 AALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSVSPSTIEEVFFKKNIGNVPITR 385
Query: 174 LLCDMYKN 181
LL DMYK+
Sbjct: 386 LLSDMYKS 393
>gi|195571509|ref|XP_002103745.1| GD18809 [Drosophila simulans]
gi|194199672|gb|EDX13248.1| GD18809 [Drosophila simulans]
Length = 680
Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats.
Identities = 70/177 (39%), Positives = 106/177 (59%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WAKN+P F L DQV LL WSELF+LNA Q S+PL + L A H + +
Sbjct: 352 AVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAA 411
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF ++ GL D +E+LQ+++Q
Sbjct: 412 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVTHIESLQEKSQ 471
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RT +P QP RFG+LLL R + S ++ +FF + V T +E L+ DM
Sbjct: 472 CALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDM 528
>gi|195342848|ref|XP_002038010.1| GM18580 [Drosophila sechellia]
gi|194132860|gb|EDW54428.1| GM18580 [Drosophila sechellia]
Length = 196
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/179 (44%), Positives = 111/179 (62%), Gaps = 3/179 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAV+W K L F L DQ +LL+ESW ELFLLN QW++PL + +P+ + V
Sbjct: 12 MAVRWVKCLMPFQTLSKNDQHLLLQESWKELFLLNLAQWTIPL-DLTPILESPLIRERVL 70
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+A+QT +++ + +L RFR + D +E C+KA+ LF ET GL D VE LQDQA
Sbjct: 71 QDEATQT--EMKTIQEILCRFRQITPDGSEVGCMKAIALFAPETAGLCDVQPVEMLQDQA 128
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
Q +L+ HVR +P Q RFGRLLL+ R I +A ++ +FF +T+ N + +LL DMY
Sbjct: 129 QCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFFKETIGNVPIARLLRDMY 187
>gi|149046956|gb|EDL99704.1| rCG58537 [Rattus norvegicus]
Length = 385
Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 120/188 (63%), Gaps = 7/188 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M++KWAK++P+F+ L +DQ++LLE++W ELF+L QW++P+ ++ L + +
Sbjct: 195 MSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNSDNTD 254
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK-------SETRGLKDSLQV 113
+ K ++ ++++ L V+ RFR + +D EFACLK +V FK SE R +++ +
Sbjct: 255 SQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAI 314
Query: 114 ENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEK 173
LQD+AQ+ L ++ T +P QP RFG+LLL+ R+I + ++ +FF KT+ N + +
Sbjct: 315 AALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITR 374
Query: 174 LLCDMYKN 181
LL DMYK+
Sbjct: 375 LLSDMYKS 382
>gi|449273615|gb|EMC83088.1| Nuclear receptor subfamily 2 group E member 1, partial [Columba
livia]
Length = 376
Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 120/188 (63%), Gaps = 7/188 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M++KWAK++P+F+ L +DQ++LLE++W ELF+L QW++P+ ++ L + +
Sbjct: 186 MSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTD 245
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK-------SETRGLKDSLQV 113
+ K ++ ++++ L V+ RFR + +D EFACLK +V FK SE R +++ +
Sbjct: 246 SQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAI 305
Query: 114 ENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEK 173
LQD+AQ+ L ++ T +P QP RFG+LLL+ R+I + ++ +FF KT+ N + +
Sbjct: 306 AALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITR 365
Query: 174 LLCDMYKN 181
LL DMYK+
Sbjct: 366 LLSDMYKS 373
>gi|431838686|gb|ELK00616.1| Nuclear receptor subfamily 2 group E member 1 [Pteropus alecto]
Length = 408
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 120/188 (63%), Gaps = 7/188 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M++KWAK++P+F+ L +DQ++LLE++W ELF+L QW++P+ ++ L + +
Sbjct: 218 MSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTD 277
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK-------SETRGLKDSLQV 113
+ K ++ ++++ L V+ RFR + +D EFACLK +V FK SE R +++ +
Sbjct: 278 SQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAI 337
Query: 114 ENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEK 173
LQD+AQ+ L ++ T +P QP RFG+LLL+ R+I + ++ +FF KT+ N + +
Sbjct: 338 AALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITR 397
Query: 174 LLCDMYKN 181
LL DMYK+
Sbjct: 398 LLSDMYKS 405
>gi|60828539|gb|AAX36846.1| nuclear receptor subfamily 2 group E member 1 [synthetic construct]
Length = 386
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 120/188 (63%), Gaps = 7/188 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M++KWAK++P+F+ L +DQ++LLE++W ELF+L QW++P+ ++ L + +
Sbjct: 195 MSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTD 254
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK-------SETRGLKDSLQV 113
+ K ++ ++++ L V+ RFR + +D EFACLK +V FK SE R +++ +
Sbjct: 255 SQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAI 314
Query: 114 ENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEK 173
LQD+AQ+ L ++ T +P QP RFG+LLL+ R+I + ++ +FF KT+ N + +
Sbjct: 315 AALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITR 374
Query: 174 LLCDMYKN 181
LL DMYK+
Sbjct: 375 LLSDMYKS 382
>gi|300676833|gb|ADK26709.1| nuclear receptor subfamily 2, group E, member 1 [Zonotrichia
albicollis]
gi|300676928|gb|ADK26800.1| nuclear receptor subfamily 2, group E, member 1 [Zonotrichia
albicollis]
Length = 385
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 120/188 (63%), Gaps = 7/188 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M++KWAK++P+F+ L +DQ++LLE++W ELF+L QW++P+ ++ L + +
Sbjct: 195 MSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTD 254
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK-------SETRGLKDSLQV 113
+ K ++ ++++ L V+ RFR + +D EFACLK +V FK SE R +++ +
Sbjct: 255 SQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAI 314
Query: 114 ENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEK 173
LQD+AQ+ L ++ T +P QP RFG+LLL+ R+I + ++ +FF KT+ N + +
Sbjct: 315 AALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITR 374
Query: 174 LLCDMYKN 181
LL DMYK+
Sbjct: 375 LLSDMYKS 382
>gi|226526921|gb|ACO71279.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Dasypus novemcinctus]
Length = 385
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 120/188 (63%), Gaps = 7/188 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M++KWAK++P+F+ L +DQ++LLE++W ELF+L QW++P+ ++ L + +
Sbjct: 195 MSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTD 254
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK-------SETRGLKDSLQV 113
+ K ++ ++++ L V+ RFR + +D EFACLK +V FK SE R +++ +
Sbjct: 255 SQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAI 314
Query: 114 ENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEK 173
LQD+AQ+ L ++ T +P QP RFG+LLL+ R+I + ++ +FF KT+ N + +
Sbjct: 315 AALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITR 374
Query: 174 LLCDMYKN 181
LL DMYK+
Sbjct: 375 LLSDMYKS 382
>gi|183637194|gb|ACC64552.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Rhinolophus ferrumequinum]
Length = 385
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 120/188 (63%), Gaps = 7/188 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M++KWAK++P+F+ L +DQ++LLE++W ELF+L QW++P+ ++ L + +
Sbjct: 195 MSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTD 254
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK-------SETRGLKDSLQV 113
+ K ++ ++++ L V+ RFR + +D EFACLK +V FK SE R +++ +
Sbjct: 255 SQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAI 314
Query: 114 ENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEK 173
LQD+AQ+ L ++ T +P QP RFG+LLL+ R+I + ++ +FF KT+ N + +
Sbjct: 315 AALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITR 374
Query: 174 LLCDMYKN 181
LL DMYK+
Sbjct: 375 LLSDMYKS 382
>gi|4507537|ref|NP_003260.1| nuclear receptor subfamily 2 group E member 1 [Homo sapiens]
gi|281183082|ref|NP_001162457.1| nuclear receptor subfamily 2 group E member 1 [Papio anubis]
gi|388490051|ref|NP_001252896.1| nuclear receptor subfamily 2 group E member 1 [Macaca mulatta]
gi|114608752|ref|XP_527467.2| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Pan
troglodytes]
gi|332259804|ref|XP_003278973.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Nomascus
leucogenys]
gi|344264555|ref|XP_003404357.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Loxodonta
africana]
gi|403289711|ref|XP_003935987.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Saimiri
boliviensis boliviensis]
gi|426354159|ref|XP_004044535.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Gorilla
gorilla gorilla]
gi|426354161|ref|XP_004044536.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Gorilla gorilla gorilla]
gi|9910804|sp|Q9Y466.1|NR2E1_HUMAN RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll; Short=hTll
gi|11141399|gb|AAG31945.1|AF220532_1 orphan nuclear receptor [Homo sapiens]
gi|15705907|gb|AAL05871.1|AF411525_1 nuclear receptor subfamily 2 group E member 1 [Homo sapiens]
gi|2292902|emb|CAA73725.1| Tailless protein [Homo sapiens]
gi|20380429|gb|AAH28031.1| Nuclear receptor subfamily 2, group E, member 1 [Homo sapiens]
gi|61358419|gb|AAX41565.1| nuclear receptor subfamily 2 group E member 1 [synthetic construct]
gi|119568770|gb|EAW48385.1| nuclear receptor subfamily 2, group E, member 1, isoform CRA_a
[Homo sapiens]
gi|164449656|gb|ABY56294.1| nuclear receptor subfamily 2, group E, member 1 (predicted) [Papio
anubis]
gi|166183798|gb|ABY84160.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Callithrix jacchus]
gi|216409726|dbj|BAH02300.1| tailes-related receptor [Homo sapiens]
gi|261857884|dbj|BAI45464.1| nuclear receptor subfamily 2, group E, member 1 [synthetic
construct]
gi|325495503|gb|ADZ17357.1| nuclear receptor TLX [Homo sapiens]
gi|355562170|gb|EHH18802.1| hypothetical protein EGK_15469 [Macaca mulatta]
gi|380816050|gb|AFE79899.1| nuclear receptor subfamily 2 group E member 1 [Macaca mulatta]
gi|380816052|gb|AFE79900.1| nuclear receptor subfamily 2 group E member 1 [Macaca mulatta]
Length = 385
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 120/188 (63%), Gaps = 7/188 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M++KWAK++P+F+ L +DQ++LLE++W ELF+L QW++P+ ++ L + +
Sbjct: 195 MSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTD 254
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK-------SETRGLKDSLQV 113
+ K ++ ++++ L V+ RFR + +D EFACLK +V FK SE R +++ +
Sbjct: 255 SQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAI 314
Query: 114 ENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEK 173
LQD+AQ+ L ++ T +P QP RFG+LLL+ R+I + ++ +FF KT+ N + +
Sbjct: 315 AALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITR 374
Query: 174 LLCDMYKN 181
LL DMYK+
Sbjct: 375 LLSDMYKS 382
>gi|397507811|ref|XP_003824377.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Pan
paniscus]
Length = 385
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 120/188 (63%), Gaps = 7/188 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M++KWAK++P+F+ L +DQ++LLE++W ELF+L QW++P+ ++ L + +
Sbjct: 195 MSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTD 254
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK-------SETRGLKDSLQV 113
+ K ++ ++++ L V+ RFR + +D EFACLK +V FK SE R +++ +
Sbjct: 255 SQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAI 314
Query: 114 ENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEK 173
LQD+AQ+ L ++ T +P QP RFG+LLL+ R+I + ++ +FF KT+ N + +
Sbjct: 315 AALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITR 374
Query: 174 LLCDMYKN 181
LL DMYK+
Sbjct: 375 LLSDMYKS 382
>gi|284005564|ref|NP_001164794.1| nuclear receptor subfamily 2 group E member 1 [Oryctolagus
cuniculus]
gi|217038306|gb|ACJ76603.1| nuclear receptor subfamily 2 group E member 1 (predicted)
[Oryctolagus cuniculus]
Length = 385
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 120/188 (63%), Gaps = 7/188 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M++KWAK++P+F+ L +DQ++LLE++W ELF+L QW++P+ ++ L + +
Sbjct: 195 MSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTD 254
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK-------SETRGLKDSLQV 113
+ K ++ ++++ L V+ RFR + +D EFACLK +V FK SE R +++ +
Sbjct: 255 SQKLNKVISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAI 314
Query: 114 ENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEK 173
LQD+AQ+ L ++ T +P QP RFG+LLL+ R+I + ++ +FF KT+ N + +
Sbjct: 315 AALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITR 374
Query: 174 LLCDMYKN 181
LL DMYK+
Sbjct: 375 LLSDMYKS 382
>gi|348560562|ref|XP_003466082.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Cavia porcellus]
Length = 385
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 120/188 (63%), Gaps = 7/188 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M++KWAK++P+F+ L +DQ++LLE++W ELF+L QW++P+ ++ L + +
Sbjct: 195 MSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTD 254
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK-------SETRGLKDSLQV 113
+ K ++ ++++ L V+ RFR + +D EFACLK +V FK SE R +++ +
Sbjct: 255 SQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAI 314
Query: 114 ENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEK 173
LQD+AQ+ L ++ T +P QP RFG+LLL+ R+I + ++ +FF KT+ N + +
Sbjct: 315 AALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITR 374
Query: 174 LLCDMYKN 181
LL DMYK+
Sbjct: 375 LLSDMYKS 382
>gi|300798463|ref|NP_001179582.1| nuclear receptor subfamily 2 group E member 1 [Bos taurus]
gi|426234591|ref|XP_004011277.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Ovis
aries]
gi|296484166|tpg|DAA26281.1| TPA: nuclear receptor subfamily 2, group E, member 1 [Bos taurus]
Length = 385
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 120/188 (63%), Gaps = 7/188 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M++KWAK++P+F+ L +DQ++LLE++W ELF+L QW++P+ ++ L + +
Sbjct: 195 MSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTD 254
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK-------SETRGLKDSLQV 113
+ K ++ ++++ L V+ RFR + +D EFACLK +V FK SE R +++ +
Sbjct: 255 SQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAI 314
Query: 114 ENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEK 173
LQD+AQ+ L ++ T +P QP RFG+LLL+ R+I + ++ +FF KT+ N + +
Sbjct: 315 AALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITR 374
Query: 174 LLCDMYKN 181
LL DMYK+
Sbjct: 375 LLSDMYKS 382
>gi|73973687|ref|XP_532253.2| PREDICTED: nuclear receptor subfamily 2 group E member 1 isoform 1
[Canis lupus familiaris]
gi|194216311|ref|XP_001502073.2| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Equus
caballus]
gi|335279315|ref|XP_003353327.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Sus
scrofa]
gi|190402236|gb|ACE77650.1| nuclear receptor subfamily 2, group E, member 1 homolog (predicted)
[Sorex araneus]
Length = 385
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 120/188 (63%), Gaps = 7/188 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M++KWAK++P+F+ L +DQ++LLE++W ELF+L QW++P+ ++ L + +
Sbjct: 195 MSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTD 254
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK-------SETRGLKDSLQV 113
+ K ++ ++++ L V+ RFR + +D EFACLK +V FK SE R +++ +
Sbjct: 255 SQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAI 314
Query: 114 ENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEK 173
LQD+AQ+ L ++ T +P QP RFG+LLL+ R+I + ++ +FF KT+ N + +
Sbjct: 315 AALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITR 374
Query: 174 LLCDMYKN 181
LL DMYK+
Sbjct: 375 LLSDMYKS 382
>gi|197215627|gb|ACH53021.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Otolemur garnettii]
Length = 385
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 120/188 (63%), Gaps = 7/188 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M++KWAK++P+F+ L +DQ++LLE++W ELF+L QW++P+ ++ L + +
Sbjct: 195 MSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTD 254
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK-------SETRGLKDSLQV 113
+ K ++ ++++ L V+ RFR + +D EFACLK +V FK SE R +++ +
Sbjct: 255 SQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAI 314
Query: 114 ENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEK 173
LQD+AQ+ L ++ T +P QP RFG+LLL+ R+I + ++ +FF KT+ N + +
Sbjct: 315 AALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITR 374
Query: 174 LLCDMYKN 181
LL DMYK+
Sbjct: 375 LLSDMYKS 382
>gi|327261729|ref|XP_003215681.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Anolis carolinensis]
Length = 382
Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 120/188 (63%), Gaps = 7/188 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M++KWAK++P+F+ L +DQ++LLE++W ELF+L QW++P+ ++ L + +
Sbjct: 192 MSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTD 251
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK-------SETRGLKDSLQV 113
+ K ++ ++++ L V+ RFR + +D EFACLK +V FK SE R +++ +
Sbjct: 252 SQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAI 311
Query: 114 ENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEK 173
LQD+AQ+ L ++ T +P QP RFG+LLL+ R+I + ++ +FF KT+ N + +
Sbjct: 312 AALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITR 371
Query: 174 LLCDMYKN 181
LL DMYK+
Sbjct: 372 LLSDMYKS 379
>gi|395816268|ref|XP_003781627.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Otolemur
garnettii]
Length = 385
Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 120/188 (63%), Gaps = 7/188 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M++KWAK++P+F+ L +DQ++LLE++W ELF+L QW++P+ ++ L + +
Sbjct: 195 MSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTD 254
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK-------SETRGLKDSLQV 113
+ K ++ ++++ L V+ RFR + +D EFACLK +V FK SE R +++ +
Sbjct: 255 SQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAI 314
Query: 114 ENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEK 173
LQD+AQ+ L ++ T +P QP RFG+LLL+ R+I + ++ +FF KT+ N + +
Sbjct: 315 AALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITR 374
Query: 174 LLCDMYKN 181
LL DMYK+
Sbjct: 375 LLSDMYKS 382
>gi|45384018|ref|NP_990501.1| nuclear receptor subfamily 2 group E member 1 [Gallus gallus]
gi|6094488|sp|Q91379.1|NR2E1_CHICK RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll
gi|619338|gb|AAB31467.1| nuclear receptor TLX [Gallus gallus]
gi|745066|prf||2015392A nuclear receptor Tlx
Length = 385
Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 120/188 (63%), Gaps = 7/188 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M++KWAK++P+F+ L +DQ++LLE++W ELF+L QW++P+ ++ L + +
Sbjct: 195 MSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTD 254
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK-------SETRGLKDSLQV 113
+ K ++ ++++ L V+ RFR + +D EFACLK +V FK SE R +++ +
Sbjct: 255 SQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAI 314
Query: 114 ENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEK 173
LQD+AQ+ L ++ T +P QP RFG+LLL+ R+I + ++ +FF KT+ N + +
Sbjct: 315 AALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITR 374
Query: 174 LLCDMYKN 181
LL DMYK+
Sbjct: 375 LLSDMYKS 382
>gi|301763932|ref|XP_002917384.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
E member 1-like [Ailuropoda melanoleuca]
Length = 380
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 120/188 (63%), Gaps = 7/188 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M++KWAK++P+F+ L +DQ++LLE++W ELF+L QW++P+ ++ L + +
Sbjct: 190 MSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTD 249
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK-------SETRGLKDSLQV 113
+ K ++ ++++ L V+ RFR + +D EFACLK +V FK SE R +++ +
Sbjct: 250 SQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAI 309
Query: 114 ENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEK 173
LQD+AQ+ L ++ T +P QP RFG+LLL+ R+I + ++ +FF KT+ N + +
Sbjct: 310 AALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITR 369
Query: 174 LLCDMYKN 181
LL DMYK+
Sbjct: 370 LLSDMYKS 377
>gi|444519103|gb|ELV12583.1| COUP transcription factor 1 [Tupaia chinensis]
Length = 216
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 111/177 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 23 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 82
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D+ +E+LQ+++Q
Sbjct: 83 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQ 142
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 143 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 199
>gi|354469258|ref|XP_003497047.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Cricetulus griseus]
Length = 518
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 120/188 (63%), Gaps = 7/188 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M++KWAK++P+F+ L +DQ++LLE++W ELF+L QW++P+ ++ L + +
Sbjct: 328 MSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNSDNTD 387
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK-------SETRGLKDSLQV 113
+ K ++ ++++ L V+ RFR + +D EFACLK +V FK SE R +++ +
Sbjct: 388 SQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAI 447
Query: 114 ENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEK 173
LQD+AQ+ L ++ T +P QP RFG+LLL+ R+I + ++ +FF KT+ N + +
Sbjct: 448 AALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITR 507
Query: 174 LLCDMYKN 181
LL DMYK+
Sbjct: 508 LLSDMYKS 515
>gi|354499555|ref|XP_003511874.1| PREDICTED: COUP transcription factor 1-like [Cricetulus griseus]
Length = 295
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 111/177 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 102 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 161
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D+ +E+LQ+++Q
Sbjct: 162 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQ 221
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 222 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 278
>gi|431907899|gb|ELK11506.1| COUP transcription factor 1 [Pteropus alecto]
Length = 263
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 111/177 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 70 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 129
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D+ +E+LQ+++Q
Sbjct: 130 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQ 189
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 190 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 246
>gi|410959792|ref|XP_003986483.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Felis
catus]
Length = 422
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 120/188 (63%), Gaps = 7/188 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M++KWAK++P+F+ L +DQ++LLE++W ELF+L QW++P+ ++ L + +
Sbjct: 232 MSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTD 291
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK-------SETRGLKDSLQV 113
+ K ++ ++++ L V+ RFR + +D EFACLK +V FK SE R +++ +
Sbjct: 292 SQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAI 351
Query: 114 ENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEK 173
LQD+AQ+ L ++ T +P QP RFG+LLL+ R+I + ++ +FF KT+ N + +
Sbjct: 352 AALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITR 411
Query: 174 LLCDMYKN 181
LL DMYK+
Sbjct: 412 LLSDMYKS 419
>gi|335283229|ref|XP_003354263.1| PREDICTED: COUP transcription factor 1-like isoform 3 [Sus scrofa]
gi|344253194|gb|EGW09298.1| COUP transcription factor 1 [Cricetulus griseus]
Length = 263
Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 111/177 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 70 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 129
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D+ +E+LQ+++Q
Sbjct: 130 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQ 189
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 190 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 246
>gi|335283227|ref|XP_003354262.1| PREDICTED: COUP transcription factor 1-like isoform 2 [Sus scrofa]
gi|426349454|ref|XP_004042315.1| PREDICTED: COUP transcription factor 1 [Gorilla gorilla gorilla]
gi|151554252|gb|AAI49439.1| NR2F1 protein [Bos taurus]
Length = 273
Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 111/177 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 80 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 139
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D+ +E+LQ+++Q
Sbjct: 140 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQ 199
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 200 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 256
>gi|440904093|gb|ELR54654.1| Nuclear receptor subfamily 2 group E member 1, partial [Bos
grunniens mutus]
Length = 396
Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 120/188 (63%), Gaps = 7/188 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M++KWAK++P+F+ L +DQ++LLE++W ELF+L QW++P+ ++ L + +
Sbjct: 206 MSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTD 265
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK-------SETRGLKDSLQV 113
+ K ++ ++++ L V+ RFR + +D EFACLK +V FK SE R +++ +
Sbjct: 266 SQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAI 325
Query: 114 ENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEK 173
LQD+AQ+ L ++ T +P QP RFG+LLL+ R+I + ++ +FF KT+ N + +
Sbjct: 326 AALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITR 385
Query: 174 LLCDMYKN 181
LL DMYK+
Sbjct: 386 LLSDMYKS 393
>gi|47224633|emb|CAG03617.1| unnamed protein product [Tetraodon nigroviridis]
Length = 393
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 120/203 (59%), Gaps = 22/203 (10%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M++KWAK++P+F+ LP DQ+ILLE++W ELF+L QW++P+ ++ L + +
Sbjct: 188 MSIKWAKSVPAFSTLPLSDQLILLEDAWRELFVLGIAQWAIPVDSTTLLAVSGMNTENTE 247
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK------------------- 101
+ + ++ ++++ L V+ RFR + +D EFACLK +V FK
Sbjct: 248 SQRMTKIVSEIQALQEVVTRFRQMRLDATEFACLKCIVTFKAGQYHRGSVLGNMCLWVPT 307
Query: 102 ---SETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQ 158
+E R +++ + LQD+AQ+ L ++ T +P QP RFG+LLL+ R++ + ++
Sbjct: 308 QGNAEIRSFRNASAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPSLRSVSPSTIE 367
Query: 159 HIFFAKTVANTSMEKLLCDMYKN 181
+FF KT+ N + +LL DMYK+
Sbjct: 368 EVFFKKTIGNVPITRLLSDMYKS 390
>gi|355691480|gb|EHH26665.1| COUP transcription factor 1, partial [Macaca mulatta]
Length = 270
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 111/177 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 77 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 136
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D+ +E+LQ+++Q
Sbjct: 137 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQ 196
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 197 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 253
>gi|444709054|gb|ELW50086.1| Nuclear receptor subfamily 2 group E member 1 [Tupaia chinensis]
Length = 441
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 120/188 (63%), Gaps = 7/188 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M++KWAK++P+F+ L +DQ++LLE++W ELF+L QW++P+ ++ L + +
Sbjct: 251 MSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTD 310
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK-------SETRGLKDSLQV 113
+ K ++ ++++ L V+ RFR + +D EFACLK +V FK SE R +++ +
Sbjct: 311 SQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAI 370
Query: 114 ENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEK 173
LQD+AQ+ L ++ T +P QP RFG+LLL+ R+I + ++ +FF KT+ N + +
Sbjct: 371 AALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITR 430
Query: 174 LLCDMYKN 181
LL DMYK+
Sbjct: 431 LLSDMYKS 438
>gi|209156457|pdb|3CJW|A Chain A, Crystal Structure Of The Human Coup-Tfii Ligand Binding
Domain
Length = 244
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 53 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 112
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++Q
Sbjct: 113 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQ 172
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 173 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 229
>gi|163954969|ref|NP_001106668.1| nuclear receptor subfamily 2, group E, member 1 [Rattus norvegicus]
gi|163658507|gb|ABY28383.1| tailless-like protein [Rattus norvegicus]
Length = 385
Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 119/188 (63%), Gaps = 7/188 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M++KWAK++P+F+ L +DQ++LLE++W ELF+L QW++P+ ++ L + +
Sbjct: 195 MSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNSDNTD 254
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK-------SETRGLKDSLQV 113
+ K ++ ++++ L V+ RFR + +D EFACLK V FK SE R +++ +
Sbjct: 255 SQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCTVTFKAVPTHSGSELRSFRNAAAI 314
Query: 114 ENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEK 173
LQD+AQ+ L ++ T +P QP RFG+LLL+ R+I + ++ +FF KT+ N + +
Sbjct: 315 AALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITR 374
Query: 174 LLCDMYKN 181
LL DMYK+
Sbjct: 375 LLSDMYKS 382
>gi|281346029|gb|EFB21613.1| hypothetical protein PANDA_017952 [Ailuropoda melanoleuca]
Length = 358
Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 111/177 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 165 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 224
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D+ +E+LQ+++Q
Sbjct: 225 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQ 284
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 285 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 341
>gi|351697339|gb|EHB00258.1| COUP transcription factor 2 [Heterocephalus glaber]
Length = 271
Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 80 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 139
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++Q
Sbjct: 140 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQ 199
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 200 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 256
>gi|47077588|dbj|BAD18677.1| unnamed protein product [Homo sapiens]
gi|119568771|gb|EAW48386.1| nuclear receptor subfamily 2, group E, member 1, isoform CRA_b
[Homo sapiens]
Length = 422
Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 120/188 (63%), Gaps = 7/188 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M++KWAK++P+F+ L +DQ++LLE++W ELF+L QW++P+ ++ L + +
Sbjct: 232 MSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTD 291
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK-------SETRGLKDSLQV 113
+ K ++ ++++ L V+ RFR + +D EFACLK +V FK SE R +++ +
Sbjct: 292 SQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAI 351
Query: 114 ENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEK 173
LQD+AQ+ L ++ T +P QP RFG+LLL+ R+I + ++ +FF KT+ N + +
Sbjct: 352 AALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITR 411
Query: 174 LLCDMYKN 181
LL DMYK+
Sbjct: 412 LLSDMYKS 419
>gi|223555951|ref|NP_001138628.1| COUP transcription factor 2 isoform c [Homo sapiens]
gi|223555953|ref|NP_001138629.1| COUP transcription factor 2 isoform c [Homo sapiens]
gi|73951115|ref|XP_858826.1| PREDICTED: COUP transcription factor 2 isoform 4 [Canis lupus
familiaris]
gi|114659052|ref|XP_001135366.1| PREDICTED: COUP transcription factor 2 isoform 2 [Pan troglodytes]
gi|332238782|ref|XP_003268581.1| PREDICTED: COUP transcription factor 2 isoform 3 [Nomascus
leucogenys]
gi|338717601|ref|XP_003363657.1| PREDICTED: COUP transcription factor 2-like isoform 2 [Equus
caballus]
gi|403258148|ref|XP_003921639.1| PREDICTED: COUP transcription factor 2 isoform 2 [Saimiri
boliviensis boliviensis]
gi|403258150|ref|XP_003921640.1| PREDICTED: COUP transcription factor 2 isoform 3 [Saimiri
boliviensis boliviensis]
gi|410960650|ref|XP_003986902.1| PREDICTED: COUP transcription factor 2 isoform 2 [Felis catus]
gi|410960652|ref|XP_003986903.1| PREDICTED: COUP transcription factor 2 isoform 3 [Felis catus]
gi|441616841|ref|XP_004088401.1| PREDICTED: COUP transcription factor 2 [Nomascus leucogenys]
gi|119622602|gb|EAX02197.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_c
[Homo sapiens]
gi|148675208|gb|EDL07155.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a [Mus
musculus]
gi|148675209|gb|EDL07156.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a [Mus
musculus]
gi|194385096|dbj|BAG60954.1| unnamed protein product [Homo sapiens]
gi|221045560|dbj|BAH14457.1| unnamed protein product [Homo sapiens]
gi|325495511|gb|ADZ17361.1| chicken ovalbumin upstream promoter-transcription factor II variant
3 [Homo sapiens]
gi|344238582|gb|EGV94685.1| COUP transcription factor 2 [Cricetulus griseus]
Length = 261
Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 70 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 129
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++Q
Sbjct: 130 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQ 189
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 190 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 246
>gi|351702072|gb|EHB04991.1| Nuclear receptor subfamily 2 group E member 1 [Heterocephalus
glaber]
Length = 445
Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 120/188 (63%), Gaps = 7/188 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M++KWAK++P+F+ L +DQ++LLE++W ELF+L QW++P+ ++ L + +
Sbjct: 255 MSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTD 314
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK-------SETRGLKDSLQV 113
+ K ++ ++++ L V+ RFR + +D EFACLK +V FK SE R +++ +
Sbjct: 315 SQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPPHSGSELRSFRNAAAI 374
Query: 114 ENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEK 173
LQD+AQ+ L ++ T +P QP RFG+LLL+ R+I + ++ +FF KT+ N + +
Sbjct: 375 AALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITR 434
Query: 174 LLCDMYKN 181
LL DMYK+
Sbjct: 435 LLSDMYKS 442
>gi|325495565|gb|ADZ17388.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 372
Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 111/177 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 179 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 238
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D+ +E+LQ+++Q
Sbjct: 239 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQ 298
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 299 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 355
>gi|32454395|gb|AAP82999.1| ovalbumin upstream promoter transcription factor II [Bos taurus]
Length = 339
Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 148 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 207
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++Q
Sbjct: 208 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVTHVESLQEKSQ 267
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 268 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 324
>gi|449513880|ref|XP_002189105.2| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Taeniopygia guttata]
Length = 413
Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 111/177 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 220 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 279
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D+ +E+LQ+++Q
Sbjct: 280 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQ 339
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 340 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 396
>gi|47211605|emb|CAF91926.1| unnamed protein product [Tetraodon nigroviridis]
Length = 267
Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 111/177 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+W++N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 76 AVEWSRNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 135
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D+ +E+LQ+++Q
Sbjct: 136 DRVVAFMDHIRIFQEQVEKLKTLHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQ 195
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 196 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 252
>gi|73611910|ref|NP_899084.2| COUP transcription factor 2 isoform 2 [Mus musculus]
gi|223555949|ref|NP_001138627.1| COUP transcription factor 2 isoform b [Homo sapiens]
gi|298228995|ref|NP_001177182.1| COUP transcription factor 2 isoform 2 [Sus scrofa]
gi|73951111|ref|XP_536178.2| PREDICTED: COUP transcription factor 2 isoform 1 [Canis lupus
familiaris]
gi|291409135|ref|XP_002720865.1| PREDICTED: nuclear receptor subfamily 2, group F, member 2-like
[Oryctolagus cuniculus]
gi|332238778|ref|XP_003268579.1| PREDICTED: COUP transcription factor 2 isoform 1 [Nomascus
leucogenys]
gi|338717599|ref|XP_003363656.1| PREDICTED: COUP transcription factor 2-like isoform 1 [Equus
caballus]
gi|344284393|ref|XP_003413952.1| PREDICTED: COUP transcription factor 2 isoform 2 [Loxodonta
africana]
gi|354465707|ref|XP_003495319.1| PREDICTED: COUP transcription factor 2-like [Cricetulus griseus]
gi|395502497|ref|XP_003755616.1| PREDICTED: COUP transcription factor 2 isoform 2 [Sarcophilus
harrisii]
gi|403258146|ref|XP_003921638.1| PREDICTED: COUP transcription factor 2 isoform 1 [Saimiri
boliviensis boliviensis]
gi|410960648|ref|XP_003986901.1| PREDICTED: COUP transcription factor 2 isoform 1 [Felis catus]
gi|76780223|gb|AAI06084.1| NR2F2 protein [Homo sapiens]
gi|119622601|gb|EAX02196.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_b
[Homo sapiens]
gi|149057165|gb|EDM08488.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_b
[Rattus norvegicus]
gi|194295609|gb|ACF40832.1| orphan nuclear receptor COUP-TFII [Sus scrofa]
gi|194377044|dbj|BAG63083.1| unnamed protein product [Homo sapiens]
gi|283482326|emb|CAR63888.1| nuclear receptor subfamily 2, group F, member 2 [Homo sapiens]
gi|325495509|gb|ADZ17360.1| chicken ovalbumin upstream promoter-transcription factor II variant
2 [Homo sapiens]
gi|384949090|gb|AFI38150.1| COUP transcription factor 2 isoform b [Macaca mulatta]
gi|387542112|gb|AFJ71683.1| COUP transcription factor 2 isoform b [Macaca mulatta]
gi|410216136|gb|JAA05287.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410258702|gb|JAA17318.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410307124|gb|JAA32162.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
Length = 281
Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 90 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 149
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++Q
Sbjct: 150 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQ 209
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 210 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 266
>gi|154147672|ref|NP_001093677.1| nuclear receptor subfamily 2, group F, member 1 [Xenopus (Silurana)
tropicalis]
gi|138519913|gb|AAI35590.1| nr2f1 protein [Xenopus (Silurana) tropicalis]
Length = 410
Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 111/177 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 217 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 276
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D+ +E+LQ+++Q
Sbjct: 277 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQ 336
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 337 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 393
>gi|426248035|ref|XP_004017771.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 1 [Ovis aries]
gi|426248039|ref|XP_004017773.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 3 [Ovis aries]
gi|426248041|ref|XP_004017774.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 4 [Ovis aries]
gi|426248043|ref|XP_004017775.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 5 [Ovis aries]
Length = 261
Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 70 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 129
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++Q
Sbjct: 130 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQ 189
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 190 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 246
>gi|301785285|ref|XP_002928058.1| PREDICTED: COUP transcription factor 1-like [Ailuropoda
melanoleuca]
Length = 414
Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 111/177 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 221 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 280
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D+ +E+LQ+++Q
Sbjct: 281 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQ 340
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 341 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 397
>gi|449497928|ref|XP_002192943.2| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Taeniopygia guttata]
Length = 532
Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 120/188 (63%), Gaps = 7/188 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M++KWAK++P+F+ L +DQ++LLE++W ELF+L QW++P+ ++ L + +
Sbjct: 342 MSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNSDNTD 401
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK-------SETRGLKDSLQV 113
+ K ++ ++++ L V+ RFR + +D EFACLK +V FK SE R +++ +
Sbjct: 402 SQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAI 461
Query: 114 ENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEK 173
LQD+AQ+ L ++ T +P QP RFG+LLL+ R+I + ++ +FF KT+ N + +
Sbjct: 462 AALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITR 521
Query: 174 LLCDMYKN 181
LL DMYK+
Sbjct: 522 LLSDMYKS 529
>gi|148705178|gb|EDL37125.1| nuclear receptor subfamily 2, group F, member 1 [Mus musculus]
Length = 416
Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 111/177 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 223 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 282
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D+ +E+LQ+++Q
Sbjct: 283 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQ 342
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 343 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 399
>gi|242247451|ref|NP_001156015.1| COUP transcription factor 2 [Ovis aries]
gi|134024805|gb|AAI34736.1| NR2F2 protein [Bos taurus]
gi|238799806|gb|ACR55775.1| nuclear receptor subfamily 2 group F member 2 [Ovis aries]
Length = 281
Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 90 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 149
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++Q
Sbjct: 150 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQ 209
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 210 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 266
>gi|426248037|ref|XP_004017772.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 2 [Ovis aries]
Length = 281
Score = 141 bits (356), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 90 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 149
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++Q
Sbjct: 150 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQ 209
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 210 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 266
>gi|325495567|gb|ADZ17389.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 382
Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 111/177 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 189 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 248
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D+ +E+LQ+++Q
Sbjct: 249 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQ 308
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 309 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 365
>gi|74223617|dbj|BAE28687.1| unnamed protein product [Mus musculus]
Length = 337
Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 111/177 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 70 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 129
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D+ +E+LQ+++Q
Sbjct: 130 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQ 189
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 190 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 246
>gi|417409902|gb|JAA51440.1| Putative coup transcription factor 2 isoform 1, partial [Desmodus
rotundus]
Length = 346
Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 155 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 214
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++Q
Sbjct: 215 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQ 274
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 275 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 331
>gi|281347624|gb|EFB23208.1| hypothetical protein PANDA_013481 [Ailuropoda melanoleuca]
Length = 357
Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 166 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 225
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++Q
Sbjct: 226 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQ 285
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 286 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 342
>gi|221124181|ref|XP_002154441.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Hydra
magnipapillata]
Length = 438
Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 76/180 (42%), Positives = 111/180 (61%), Gaps = 2/180 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M+V WA+++P F LPF DQ +LLEESWSELF+L+ IQ+S P+ L++ A+
Sbjct: 257 MSVSWAQSIPKFLELPFSDQALLLEESWSELFILSMIQYSEPIELGVLLYSIGAENAS-- 314
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+ K S +++ L ++ RF+ + +D EFACLKA VLFK + GL+ +ENLQD A
Sbjct: 315 SQKGSNDIQELQTLQQIVYRFQNLAIDCTEFACLKATVLFKPDLEGLRCGQYIENLQDYA 374
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
Q ML ++VR HP PARFG+LLL+ R I + + +F + ++K+L DM K
Sbjct: 375 QSMLGEYVRNTHPQTPARFGKLLLLLPSLRAIGAKTLIKLFLKGDTDQSPIDKVLHDMRK 434
>gi|431891667|gb|ELK02268.1| COUP transcription factor 2, partial [Pteropus alecto]
gi|432091002|gb|ELK24218.1| COUP transcription factor 2, partial [Myotis davidii]
Length = 343
Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 152 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 211
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++Q
Sbjct: 212 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQ 271
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 272 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 328
>gi|345798599|ref|XP_848884.2| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1 isoform
2 [Canis lupus familiaris]
Length = 423
Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 111/177 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 230 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 289
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D+ +E+LQ+++Q
Sbjct: 290 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQ 349
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 350 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 406
>gi|259013249|ref|NP_001158369.1| transcription factor COUP1 [Saccoglossus kowalevskii]
gi|196123801|gb|ACG70189.1| COUP protein [Saccoglossus kowalevskii]
Length = 435
Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/178 (41%), Positives = 110/178 (61%), Gaps = 2/178 (1%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASE-HVAAVP 60
AV+WA+N+P F L DQV LL WSELF+LNA Q S+P L +PL AS H + +
Sbjct: 244 AVEWARNIPFFPDLQVTDQVALLRMVWSELFVLNASQCSMP-LHVAPLLAASGLHTSPMS 302
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D+ +ENLQ+++
Sbjct: 303 ADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIENLQEKS 362
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
Q L ++VR+ +P QP RFG+LLL R + S ++ +FF + V T +E L+ DM
Sbjct: 363 QCALEEYVRSQYPNQPNRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDM 420
>gi|440909469|gb|ELR59375.1| COUP transcription factor 2, partial [Bos grunniens mutus]
Length = 348
Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 157 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 216
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++Q
Sbjct: 217 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQ 276
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 277 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 333
>gi|296198939|ref|XP_002746955.1| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Callithrix jacchus]
Length = 386
Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 120/189 (63%), Gaps = 8/189 (4%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M++KWAK++P+F+ L +DQ++LLE++W ELF+L QW++P+ ++ L + +
Sbjct: 195 MSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTD 254
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK--------SETRGLKDSLQ 112
+ K ++ ++++ L V+ RFR + +D EFACLK +V F+ SE R +++
Sbjct: 255 SQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFQAVIPTHSGSELRSFRNAAA 314
Query: 113 VENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSME 172
+ LQD+AQ+ L ++ T +P QP RFG+LLL+ R+I + ++ +FF KT+ N +
Sbjct: 315 IAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPIT 374
Query: 173 KLLCDMYKN 181
+LL DMYK+
Sbjct: 375 RLLSDMYKS 383
>gi|444730350|gb|ELW70737.1| COUP transcription factor 2 [Tupaia chinensis]
Length = 413
Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 222 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 281
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++Q
Sbjct: 282 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQ 341
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 342 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 398
>gi|380800545|gb|AFE72148.1| COUP transcription factor 1, partial [Macaca mulatta]
Length = 383
Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 111/177 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 190 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 249
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D+ +E+LQ+++Q
Sbjct: 250 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQ 309
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 310 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 366
>gi|325495563|gb|ADZ17387.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 397
Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 111/177 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 204 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 263
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D+ +E+LQ+++Q
Sbjct: 264 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQ 323
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 324 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 380
>gi|395747169|ref|XP_003778564.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 2 [Pongo
abelii]
Length = 414
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 223 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 282
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++Q
Sbjct: 283 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQ 342
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 343 CXLEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 399
>gi|348530340|ref|XP_003452669.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Oreochromis niloticus]
Length = 410
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 111/177 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 219 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 278
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D+ +E+LQ+++Q
Sbjct: 279 DRVVAFMDHIRIFQEQVEKLKTLHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQ 338
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 339 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 395
>gi|321454980|gb|EFX66127.1| hypothetical protein DAPPUDRAFT_116667 [Daphnia pulex]
Length = 340
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/177 (44%), Positives = 112/177 (63%), Gaps = 4/177 (2%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
+ V+WAK++PSF+ L +RDQ +LLEE+W ELF+L QW L L E + + N E +
Sbjct: 165 LTVRWAKSIPSFSHLFYRDQSLLLEEAWCELFVLTVAQWGLSLDEVNTMRNCPE----LT 220
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+ + +R L+ V+ R L+ +D EFACLKA+VLFK ET GL+D L +E LQDQ
Sbjct: 221 SERHELLLEGLRHLHQVVARIHLLRLDHTEFACLKALVLFKPETLGLRDGLAIEILQDQT 280
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCD 177
Q+ML VR+H P+ RFG+LLL+ + + SA V +FF K + +T + +LL D
Sbjct: 281 QMMLHDMVRSHRPSLAGRFGKLLLLLPALKAVQSANVVDLFFRKLIGDTPISRLLAD 337
>gi|301777570|ref|XP_002924203.1| PREDICTED: COUP transcription factor 2-like [Ailuropoda
melanoleuca]
Length = 383
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 192 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 251
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++Q
Sbjct: 252 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQ 311
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 312 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 368
>gi|297294717|ref|XP_001089115.2| PREDICTED: COUP transcription factor 1 [Macaca mulatta]
Length = 560
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 111/177 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 367 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 426
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D+ +E+LQ+++Q
Sbjct: 427 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQ 486
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 487 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 543
>gi|395511284|ref|XP_003759890.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Sarcophilus harrisii]
Length = 416
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 111/177 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 223 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 282
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D+ +E+LQ+++Q
Sbjct: 283 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQ 342
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 343 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 399
>gi|355778322|gb|EHH63358.1| COUP transcription factor 2, partial [Macaca fascicularis]
Length = 352
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 161 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 220
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++Q
Sbjct: 221 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQ 280
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 281 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 337
>gi|325495569|gb|ADZ17390.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 398
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 111/177 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 205 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 264
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D+ +E+LQ+++Q
Sbjct: 265 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQ 324
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 325 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 381
>gi|334325755|ref|XP_003340678.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
F member 1-A-like [Monodelphis domestica]
Length = 416
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 111/177 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 223 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 282
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D+ +E+LQ+++Q
Sbjct: 283 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQ 342
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 343 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 399
>gi|363744735|ref|XP_003643114.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Gallus gallus]
Length = 418
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 111/177 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 225 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 284
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D+ +E+LQ+++Q
Sbjct: 285 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQ 344
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 345 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 401
>gi|14149746|ref|NP_066285.1| COUP transcription factor 2 isoform a [Homo sapiens]
gi|45598394|ref|NP_033827.2| COUP transcription factor 2 isoform 1 [Mus musculus]
gi|109082429|ref|XP_001099957.1| PREDICTED: COUP transcription factor 2 isoform 4 [Macaca mulatta]
gi|114659046|ref|XP_001135545.1| PREDICTED: COUP transcription factor 2 isoform 4 [Pan troglodytes]
gi|296203984|ref|XP_002749136.1| PREDICTED: COUP transcription factor 2 [Callithrix jacchus]
gi|332238780|ref|XP_003268580.1| PREDICTED: COUP transcription factor 2 isoform 2 [Nomascus
leucogenys]
gi|395831197|ref|XP_003788693.1| PREDICTED: COUP transcription factor 2 [Otolemur garnettii]
gi|402875344|ref|XP_003901468.1| PREDICTED: COUP transcription factor 2 [Papio anubis]
gi|426380391|ref|XP_004056850.1| PREDICTED: COUP transcription factor 2 [Gorilla gorilla gorilla]
gi|114203|sp|P24468.1|COT2_HUMAN RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=Apolipoprotein A-I regulatory protein 1;
Short=ARP-1; AltName: Full=COUP transcription factor II;
Short=COUP-TF II; AltName: Full=Nuclear receptor
subfamily 2 group F member 2
gi|46397833|sp|P43135.2|COT2_MOUSE RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=Apolipoprotein AI regulatory protein 1;
Short=ARP-1; AltName: Full=COUP transcription factor II;
Short=COUP-TF II; AltName: Full=Nuclear receptor
subfamily 2 group F member 2
gi|2137150|pir||I48975 apolipoprotein A-I regulatory protein 1 - mouse
gi|179024|gb|AAA86429.1| apolipoprotein AI regulatory protein-1 [Homo sapiens]
gi|466470|gb|AAA19854.1| COUP-TFII [Mus musculus]
gi|1575343|gb|AAB09475.1| apoliprotein AI regulatory protein-1 [Homo sapiens]
gi|15779213|gb|AAH14664.1| Nuclear receptor subfamily 2, group F, member 2 [Homo sapiens]
gi|27503725|gb|AAH42484.1| Nuclear receptor subfamily 2, group F, member 2 [Mus musculus]
gi|27781285|gb|AAH42897.1| Nuclear receptor subfamily 2, group F, member 2 [Homo sapiens]
gi|61363669|gb|AAX42426.1| nuclear receptor subfamily 2 group F member 2 [synthetic construct]
gi|74148522|dbj|BAE24245.1| unnamed protein product [Mus musculus]
gi|119622600|gb|EAX02195.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a
[Homo sapiens]
gi|119622603|gb|EAX02198.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a
[Homo sapiens]
gi|216409730|dbj|BAH02302.1| ovalbumin upstream promoter transcription factor II [Homo sapiens]
gi|307685477|dbj|BAJ20669.1| nuclear receptor subfamily 2, group F, member 2 [synthetic
construct]
gi|325495507|gb|ADZ17359.1| chicken ovalbumin upstream promoter-transcription factor II variant
1 [Homo sapiens]
gi|410216134|gb|JAA05286.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410216138|gb|JAA05288.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410216140|gb|JAA05289.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410258704|gb|JAA17319.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410307120|gb|JAA32160.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410307122|gb|JAA32161.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410307126|gb|JAA32163.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410336357|gb|JAA37125.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410336359|gb|JAA37126.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
Length = 414
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 223 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 282
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++Q
Sbjct: 283 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQ 342
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 343 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 399
>gi|297678833|ref|XP_002817264.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Pongo
abelii]
Length = 385
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 119/188 (63%), Gaps = 7/188 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M++KWAK++P+F+ L +DQ++LLE++W ELF+L QW++P+ ++ L + +
Sbjct: 195 MSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTD 254
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK-------SETRGLKDSLQV 113
+ K ++ ++++ L V+ RFR + +D EFACLK +V FK SE R +++ +
Sbjct: 255 SQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAI 314
Query: 114 ENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEK 173
LQD+AQ+ L ++ +P QP RFG+LLL+ R+I + ++ +FF KT+ N + +
Sbjct: 315 AALQDEAQLTLNSYIHNRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITR 374
Query: 174 LLCDMYKN 181
LL DMYK+
Sbjct: 375 LLSDMYKS 382
>gi|355693023|gb|EHH27626.1| COUP transcription factor 2, partial [Macaca mulatta]
Length = 380
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 189 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 248
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++Q
Sbjct: 249 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQ 308
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 309 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 365
>gi|170031169|ref|XP_001843459.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167869235|gb|EDS32618.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 697
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/185 (43%), Positives = 111/185 (60%), Gaps = 13/185 (7%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLP-----LLESSPLFNASEH 55
M+V+W + L F L DQ +LL+ESW ELFLLN QWS+P LLES P+ +
Sbjct: 493 MSVRWVRCLIPFQTLSKNDQHLLLQESWKELFLLNFAQWSVPWDLSALLESPPVRDR--- 549
Query: 56 VAAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVEN 115
+P A+Q +++ + +L RFR + D +E C+KAV+LF ET L D VE
Sbjct: 550 ---LPQDPATQM--EMKTMQEILCRFRQISPDLSELGCMKAVILFSPETSELCDVQPVEM 604
Query: 116 LQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLL 175
LQDQAQ +L+ HVR +P QP RFGRLLL+ R I S ++ +FF +T+ + +LL
Sbjct: 605 LQDQAQCVLSDHVRVRYPRQPTRFGRLLLLLPLLRTIRSTTIETLFFKETIGTVPISRLL 664
Query: 176 CDMYK 180
DMY+
Sbjct: 665 IDMYQ 669
>gi|147900283|ref|NP_001083835.1| nuclear receptor subfamily 2, group F, member 1 [Xenopus laevis]
gi|5353742|gb|AAD42224.1|AF157558_1 COUP transcription factor 1 [Xenopus laevis]
gi|213623636|gb|AAI70009.1| COUP transcription factor 1 [Xenopus laevis]
gi|213626739|gb|AAI70011.1| COUP transcription factor 1 [Xenopus laevis]
Length = 411
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 111/177 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 218 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 277
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++C+KA+VLF S+ GL D+ +E+LQ+++Q
Sbjct: 278 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCIKAIVLFTSDACGLSDAAHIESLQEKSQ 337
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 338 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 394
>gi|482928|emb|CAA54096.1| ARP-1 [Mus musculus]
Length = 414
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 223 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 282
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++Q
Sbjct: 283 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQ 342
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 343 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 399
>gi|28461227|ref|NP_786998.1| COUP transcription factor 1 [Bos taurus]
gi|10719970|sp|Q9TTR8.1|COT1_BOVIN RecName: Full=COUP transcription factor 1; Short=COUP-TF1; AltName:
Full=COUP transcription factor I; Short=COUP-TF I;
AltName: Full=Nuclear receptor subfamily 2 group F
member 1
gi|5870336|emb|CAB55623.1| transcription factor, COUP-TFI [Bos taurus]
Length = 424
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 111/177 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 231 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 290
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D+ +E+LQ+++Q
Sbjct: 291 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQ 350
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 351 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 407
>gi|426231150|ref|XP_004023618.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1 [Ovis
aries]
Length = 457
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 111/177 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 264 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 323
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D+ +E+LQ+++Q
Sbjct: 324 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQ 383
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 384 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 440
>gi|27806025|ref|NP_776827.1| COUP transcription factor 2 [Bos taurus]
gi|10719969|sp|Q9TTR7.1|COT2_BOVIN RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=COUP transcription factor II; Short=COUP-TF II;
AltName: Full=Nuclear receptor subfamily 2 group F
member 2
gi|5870338|emb|CAB55624.1| COUP-TFII transcription factor [Bos taurus]
gi|115305372|gb|AAI23678.1| Nuclear receptor subfamily 2, group F, member 2 [Bos taurus]
gi|296475581|tpg|DAA17696.1| TPA: COUP transcription factor 2 [Bos taurus]
Length = 414
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 223 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 282
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++Q
Sbjct: 283 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQ 342
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 343 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 399
>gi|332224991|ref|XP_003261656.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1
[Nomascus leucogenys]
Length = 423
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 111/177 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 230 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 289
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D+ +E+LQ+++Q
Sbjct: 290 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQ 349
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 350 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 406
>gi|60654339|gb|AAX29860.1| nuclear receptor subfamily 2 group F member 2 [synthetic construct]
Length = 415
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 223 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 282
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++Q
Sbjct: 283 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQ 342
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 343 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 399
>gi|111185902|ref|NP_034281.2| COUP transcription factor 1 [Mus musculus]
gi|466468|gb|AAA19853.1| COUP-TFI [Mus musculus]
gi|80478748|gb|AAI08409.1| Nuclear receptor subfamily 2, group F, member 1 [Mus musculus]
Length = 420
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 111/177 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 227 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 286
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D+ +E+LQ+++Q
Sbjct: 287 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQ 346
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 347 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 403
>gi|45383323|ref|NP_989752.1| COUP transcription factor 2 [Gallus gallus]
gi|3913114|sp|Q90733.1|COT2_CHICK RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=COUP transcription factor II; Short=COUP-TF II;
AltName: Full=Nuclear receptor subfamily 2 group F
member 2
gi|392817|gb|AAA17733.1| orphan receptor COUP-TFII [Gallus gallus]
Length = 410
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 219 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 278
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++Q
Sbjct: 279 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQ 338
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 339 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 395
>gi|147901133|ref|NP_001080488.1| nuclear receptor subfamily 2, group F, member 2 [Xenopus laevis]
gi|27924187|gb|AAH44975.1| Nr2f2 protein [Xenopus laevis]
Length = 405
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 214 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 273
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++Q
Sbjct: 274 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQ 333
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 334 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 390
>gi|410049651|ref|XP_003952785.1| PREDICTED: COUP transcription factor 2 [Pan troglodytes]
Length = 421
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 230 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 289
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++Q
Sbjct: 290 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQ 349
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 350 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 406
>gi|335283225|ref|XP_003354261.1| PREDICTED: COUP transcription factor 1-like isoform 1 [Sus scrofa]
Length = 422
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 111/177 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 229 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 288
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D+ +E+LQ+++Q
Sbjct: 289 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQ 348
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 349 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 405
>gi|5032173|ref|NP_005645.1| COUP transcription factor 1 [Homo sapiens]
gi|332821062|ref|XP_517657.3| PREDICTED: COUP transcription factor 1 [Pan troglodytes]
gi|402872088|ref|XP_003899969.1| PREDICTED: COUP transcription factor 1 [Papio anubis]
gi|116959|sp|P10589.1|COT1_HUMAN RecName: Full=COUP transcription factor 1; Short=COUP-TF1; AltName:
Full=COUP transcription factor I; Short=COUP-TF I;
AltName: Full=Nuclear receptor subfamily 2 group F
member 1; AltName: Full=V-erbA-related protein 3;
Short=EAR-3
gi|31067|emb|CAA31283.1| unnamed protein product [Homo sapiens]
gi|13278759|gb|AAH04154.1| Nuclear receptor subfamily 2, group F, member 1 [Homo sapiens]
gi|52790443|gb|AAH17493.1| Nuclear receptor subfamily 2, group F, member 1 [Homo sapiens]
gi|119616415|gb|EAW96009.1| nuclear receptor subfamily 2, group F, member 1, isoform CRA_b
[Homo sapiens]
gi|208966886|dbj|BAG73457.1| nuclear receptor subfamily 2, group F, member 1 [synthetic
construct]
gi|387542998|gb|AFJ72126.1| COUP transcription factor 1 [Macaca mulatta]
Length = 423
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 111/177 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 230 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 289
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D+ +E+LQ+++Q
Sbjct: 290 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQ 349
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 350 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 406
>gi|2500905|sp|Q60632.2|COT1_MOUSE RecName: Full=COUP transcription factor 1; Short=COUP-TF1; AltName:
Full=COUP transcription factor I; Short=COUP-TF I;
AltName: Full=Nuclear receptor subfamily 2 group F
member 1; AltName: Full=V-erbA-related protein 3;
Short=EAR-3
gi|695627|emb|CAA52231.1| COUP-TF1 [Mus musculus]
Length = 422
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 111/177 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 229 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 288
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D+ +E+LQ+++Q
Sbjct: 289 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQ 348
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 349 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 405
>gi|190339066|gb|AAI62484.1| Nr2f2 protein [Danio rerio]
Length = 428
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 237 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 296
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++Q
Sbjct: 297 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQ 356
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 357 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 413
>gi|195473765|ref|XP_002089163.1| GE25723 [Drosophila yakuba]
gi|194175264|gb|EDW88875.1| GE25723 [Drosophila yakuba]
Length = 691
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/179 (44%), Positives = 111/179 (62%), Gaps = 3/179 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAV+W K L F L DQ +LL+ESW ELFLLN QW++PL + +P+ + V
Sbjct: 507 MAVRWVKCLMPFQTLSKNDQHLLLQESWKELFLLNLAQWTIPL-DLTPILESPLIRERVL 565
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+A+QT +++ + +L RFR + D +E C+KA+ LF ET GL D VE LQDQA
Sbjct: 566 QDEATQT--EMKTIQEILCRFRQITPDGSEVGCMKAIALFAPETAGLCDVQPVEMLQDQA 623
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
Q +L+ HVR +P Q RFGRLLL+ R I +A ++ +FF +T+ N + +LL DMY
Sbjct: 624 QCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFFKETIGNVPIARLLRDMY 682
>gi|298228993|ref|NP_001177181.1| COUP transcription factor 2 isoform 1 [Sus scrofa]
gi|344284391|ref|XP_003413951.1| PREDICTED: COUP transcription factor 2 isoform 1 [Loxodonta
africana]
gi|345798235|ref|XP_849497.2| PREDICTED: COUP transcription factor 2 isoform 2 [Canis lupus
familiaris]
gi|348579089|ref|XP_003475314.1| PREDICTED: COUP transcription factor 2 [Cavia porcellus]
Length = 414
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 223 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 282
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++Q
Sbjct: 283 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQ 342
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 343 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 399
>gi|18158445|ref|NP_542956.1| COUP transcription factor 2 [Rattus norvegicus]
gi|3913096|sp|O09018.1|COT2_RAT RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=Apolipoprotein A-I regulatory protein 1;
Short=ARP-1; AltName: Full=COUP transcription factor II;
Short=COUP-TF II; AltName: Full=COUPb; AltName:
Full=Nuclear receptor subfamily 2 group F member 2;
AltName: Full=Ovalbumin upstream promoter beta nuclear
receptor
gi|2197125|gb|AAB61297.1| ovalbumin upstream promoter beta nuclear receptor rCOUPb [Rattus
norvegicus]
gi|149057164|gb|EDM08487.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a
[Rattus norvegicus]
Length = 414
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 223 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 282
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++Q
Sbjct: 283 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQ 342
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 343 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 399
>gi|30140|emb|CAA34277.1| COUP-TF [Homo sapiens]
gi|226405|prf||1510304A COUP transcription factor
Length = 418
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 111/177 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 225 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 284
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D+ +E+LQ+++Q
Sbjct: 285 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQ 344
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 345 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 401
>gi|194760978|ref|XP_001962709.1| GF15588 [Drosophila ananassae]
gi|190616406|gb|EDV31930.1| GF15588 [Drosophila ananassae]
Length = 702
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/179 (44%), Positives = 111/179 (62%), Gaps = 3/179 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAV+W K L F L DQ +LL+ESW ELFLLN QW++PL + +P+ + V
Sbjct: 517 MAVRWVKCLMPFQTLSKNDQHLLLQESWKELFLLNLAQWTIPL-DLTPILESPLIRERVL 575
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+A+QT +++ + +L RFR + D +E C+KA+ LF ET GL D VE LQDQA
Sbjct: 576 QDEATQT--EMKTIQEILCRFRQITPDGSEVGCMKAIALFAPETAGLCDVQPVEMLQDQA 633
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
Q +L+ HVR +P Q RFGRLLL+ R I +A ++ +FF +T+ N + +LL DMY
Sbjct: 634 QCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFFKETIGNVPIARLLRDMY 692
>gi|441616846|ref|XP_004088402.1| PREDICTED: COUP transcription factor 2 [Nomascus leucogenys]
Length = 422
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 231 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 290
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++Q
Sbjct: 291 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQ 350
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 351 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 407
>gi|166796001|ref|NP_001107703.1| nuclear receptor subfamily 2, group F, member 2 [Xenopus (Silurana)
tropicalis]
gi|163916021|gb|AAI57200.1| nr2f2 protein [Xenopus (Silurana) tropicalis]
Length = 408
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 217 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 276
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++Q
Sbjct: 277 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQ 336
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 337 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 393
>gi|380796215|gb|AFE69983.1| COUP transcription factor 1, partial [Macaca mulatta]
Length = 383
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 190 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 249
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++Q
Sbjct: 250 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQ 309
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 310 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 366
>gi|24111246|ref|NP_571258.1| COUP transcription factor 2 [Danio rerio]
gi|1311663|gb|AAA99309.1| Drosophila seven-up homolog/mammalian ARP-1 homolog [Danio rerio]
Length = 422
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 231 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 290
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++Q
Sbjct: 291 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQ 350
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 351 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 407
>gi|443715570|gb|ELU07483.1| hypothetical protein CAPTEDRAFT_224811 [Capitella teleta]
Length = 360
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/194 (40%), Positives = 115/194 (59%), Gaps = 15/194 (7%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNAS--------- 53
V W K +P+F AL DQ+ LLEE+W +LFL++ Q + L ++ + NA
Sbjct: 164 VSWVKQIPAFIALHHTDQITLLEETWKDLFLISLAQTACHLDIATLMENADTKLCNPLQV 223
Query: 54 ---EHVAAVPNGKASQTA---ADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGL 107
V + N + Q A + +++ ++ R + + +D EFACL+AVVLF+ + L
Sbjct: 224 LRHRDVHSDINDRHLQVAHFVQEAKIVCDMILRMKRMAMDRTEFACLRAVVLFRQDISRL 283
Query: 108 KDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVA 167
KD VENLQDQAQ++LA++ HH Q RFGRLLL T R IP++ V IFF +TV
Sbjct: 284 KDVRPVENLQDQAQMILAEYSILHHQNQSTRFGRLLLATPALRAIPASLVSRIFFRETVG 343
Query: 168 NTSMEKLLCDMYKN 181
N +E+L+CD+Y+N
Sbjct: 344 NIPIERLVCDIYQN 357
>gi|310703613|ref|NP_001185508.1| COUP transcription factor 2 [Taeniopygia guttata]
Length = 410
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 219 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 278
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++Q
Sbjct: 279 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQ 338
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 339 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 395
>gi|197129927|gb|ACH46425.1| putative nuclear receptor subfamily 2 group F member 2 [Taeniopygia
guttata]
Length = 410
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 219 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 278
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++Q
Sbjct: 279 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQ 338
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 339 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 395
>gi|4160012|gb|AAD05225.1| dissatisfaction [Drosophila melanogaster]
Length = 693
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/179 (44%), Positives = 111/179 (62%), Gaps = 3/179 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAV+W K L F L DQ +LL+ESW ELFLLN QW++PL + +P+ + V
Sbjct: 509 MAVRWVKCLMPFQTLSKNDQHLLLQESWKELFLLNLAQWTIPL-DLTPILESPLIRERVL 567
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+A+QT +++ + +L RFR + D +E C+KA+ LF ET GL D VE LQDQA
Sbjct: 568 QDEATQT--EMKTIQEILCRFRQITPDGSEVGCMKAIALFAPETAGLCDVQPVEMLQDQA 625
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
Q +L+ HVR +P Q RFGRLLL+ R I +A ++ +FF +T+ N + +LL DMY
Sbjct: 626 QCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFFKETIGNVPIARLLRDMY 684
>gi|17137164|ref|NP_477140.1| dissatisfaction, isoform A [Drosophila melanogaster]
gi|442626233|ref|NP_001260109.1| dissatisfaction, isoform B [Drosophila melanogaster]
gi|7297033|gb|AAF52303.1| dissatisfaction, isoform A [Drosophila melanogaster]
gi|440213405|gb|AGB92645.1| dissatisfaction, isoform B [Drosophila melanogaster]
Length = 691
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/179 (44%), Positives = 111/179 (62%), Gaps = 3/179 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAV+W K L F L DQ +LL+ESW ELFLLN QW++PL + +P+ + V
Sbjct: 507 MAVRWVKCLMPFQTLSKNDQHLLLQESWKELFLLNLAQWTIPL-DLTPILESPLIRERVL 565
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+A+QT +++ + +L RFR + D +E C+KA+ LF ET GL D VE LQDQA
Sbjct: 566 QDEATQT--EMKTIQEILCRFRQITPDGSEVGCMKAIALFAPETAGLCDVQPVEMLQDQA 623
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
Q +L+ HVR +P Q RFGRLLL+ R I +A ++ +FF +T+ N + +LL DMY
Sbjct: 624 QCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFFKETIGNVPIARLLRDMY 682
>gi|194856940|ref|XP_001968860.1| GG25103 [Drosophila erecta]
gi|190660727|gb|EDV57919.1| GG25103 [Drosophila erecta]
Length = 693
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/179 (44%), Positives = 111/179 (62%), Gaps = 3/179 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAV+W K L F L DQ +LL+ESW ELFLLN QW++PL + +P+ + V
Sbjct: 509 MAVRWVKCLMPFQTLSKNDQHLLLQESWKELFLLNLAQWTIPL-DLTPILESPLIRERVL 567
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+A+QT +++ + +L RFR + D +E C+KA+ LF ET GL D VE LQDQA
Sbjct: 568 QDEATQT--EMKTIQEILCRFRQITPDGSEVGCMKAIALFAPETAGLCDVQPVEMLQDQA 625
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
Q +L+ HVR +P Q RFGRLLL+ R I +A ++ +FF +T+ N + +LL DMY
Sbjct: 626 QCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFFKETIGNVPIARLLRDMY 684
>gi|395502499|ref|XP_003755617.1| PREDICTED: COUP transcription factor 2 isoform 3 [Sarcophilus
harrisii]
Length = 418
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 227 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 286
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++Q
Sbjct: 287 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQ 346
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 347 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 403
>gi|157109777|ref|XP_001650818.1| Dissatisfaction (Dsf) [Aedes aegypti]
gi|108878920|gb|EAT43145.1| AAEL005381-PA, partial [Aedes aegypti]
Length = 723
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/180 (42%), Positives = 110/180 (61%), Gaps = 3/180 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M+V+W + L F L DQ +LL+ESW ELFLLN QWS+P + S L + + +P
Sbjct: 524 MSVRWVRCLIPFQTLSKNDQHLLLQESWKELFLLNFAQWSVPW-DLSALLESPQVRDRIP 582
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+ A+Q +++ + +L RFR + D +E C+KAV+LF ET L D VE LQDQA
Sbjct: 583 HDPATQ--MEMKTMQEILCRFRQISPDLSELGCMKAVILFSPETSELCDVQPVEMLQDQA 640
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
Q +L+ HVR +P QP RFGRLLL+ R I S ++ +FF +T+ + +LL DMY+
Sbjct: 641 QCVLSDHVRVRYPRQPTRFGRLLLLLPLLRTIRSVTIETLFFKETIGTVPISRLLIDMYQ 700
>gi|334318448|ref|XP_003340091.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 2-like
[Monodelphis domestica]
gi|395502495|ref|XP_003755615.1| PREDICTED: COUP transcription factor 2 isoform 1 [Sarcophilus
harrisii]
Length = 411
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 220 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 279
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++Q
Sbjct: 280 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQ 339
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 340 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 396
>gi|158298421|ref|XP_318587.4| AGAP009575-PA [Anopheles gambiae str. PEST]
gi|157013872|gb|EAA14563.5| AGAP009575-PA [Anopheles gambiae str. PEST]
Length = 761
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/180 (42%), Positives = 111/180 (61%), Gaps = 3/180 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M+V+W + L F L DQ +LL+ESW ELFLLN QWS+P + S L ++ + +P
Sbjct: 555 MSVRWVRCLIPFQTLSKNDQHLLLQESWKELFLLNFAQWSVPW-DLSGLLDSPQVRDRLP 613
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
A+Q +++ + +L RFR + D +E C+KAV+LF ET L D VE LQDQA
Sbjct: 614 PDAATQ--LEMKTMQEILCRFRQISPDLSELGCMKAVILFSPETSELCDVQPVEMLQDQA 671
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
Q +L++HVR +P QP RFGRLLL+ R I S ++ +FF +T+ + +LL DMY+
Sbjct: 672 QCVLSEHVRVRYPRQPTRFGRLLLLLPLLRTIRSTTIETLFFKETIGTVPISRLLIDMYQ 731
>gi|149410809|ref|XP_001508281.1| PREDICTED: COUP transcription factor 2 [Ornithorhynchus anatinus]
Length = 411
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 220 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 279
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++Q
Sbjct: 280 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQ 339
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 340 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 396
>gi|34194058|gb|AAH56574.1| Nuclear receptor subfamily 2, group F, member 1a [Danio rerio]
Length = 410
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 111/177 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 219 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 278
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++C+KA+VLF S+ GL D+ +E+LQ+++Q
Sbjct: 279 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCIKAIVLFTSDACGLSDAAHIESLQEKSQ 338
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 339 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 395
>gi|410923623|ref|XP_003975281.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Takifugu rubripes]
Length = 411
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 111/177 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+W++N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 220 AVEWSRNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 279
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D+ +E+LQ+++Q
Sbjct: 280 DRVVAFMDHIRIFQEQVEKLKTLHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQ 339
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 340 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 396
>gi|20589472|ref|NP_571255.1| nuclear receptor subfamily 2 group F member 1-A [Danio rerio]
gi|6094377|sp|Q06725.1|N2F1A_DANRE RecName: Full=Nuclear receptor subfamily 2 group F member 1-A;
AltName: Full=COUP transcription factor 1-A;
Short=COUP-TFalpha-A; Short=zCOUP-TFI; AltName:
Full=Seven-up related 44; Short=Svp[44]; Short=zSvp[44];
AltName: Full=Steroid receptor homolog SVP 44
gi|296419|emb|CAA49780.1| svp 44 [Danio rerio]
gi|45219746|gb|AAH66671.1| Nuclear receptor subfamily 2, group F, member 1a [Danio rerio]
Length = 411
Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 111/177 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 220 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 279
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++C+KA+VLF S+ GL D+ +E+LQ+++Q
Sbjct: 280 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCIKAIVLFTSDACGLSDAAHIESLQEKSQ 339
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 340 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 396
>gi|189237797|ref|XP_973111.2| PREDICTED: similar to PNR-like [Tribolium castaneum]
Length = 426
Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/180 (42%), Positives = 108/180 (60%), Gaps = 7/180 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
+A+KWAK++PSF L +RDQ ILLEESWSELF+L A QW+ P+ E+ + N A P
Sbjct: 251 LAIKWAKSIPSFLQLSYRDQSILLEESWSELFVLTAAQWAFPVDETLLVSN-----AIAP 305
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+ + D R L ++ R L+ VD E ACLKA+VLFKSE RGL + VE LQDQ
Sbjct: 306 TSRHAALEEDARRLREIITRLTLLRVDHTEHACLKALVLFKSECRGLCEPSHVELLQDQT 365
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
VML ++ RFG+LLL + + ++ + F +TV + ++++LL D+ K
Sbjct: 366 HVMLNEYCNQRQTK--GRFGKLLLTLPAVQAVTRRGLEELIFRQTVGDVAIDRLLTDLAK 423
>gi|47224170|emb|CAG13090.1| unnamed protein product [Tetraodon nigroviridis]
Length = 746
Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 569 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 628
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF ++ GL D VE+LQ+++Q
Sbjct: 629 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVAHVESLQEKSQ 688
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 689 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 745
Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 106/218 (48%), Gaps = 43/218 (19%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 145 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 204
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKS------------------- 102
+ +R+ +++ + + VD AE++CLKA+VLF +
Sbjct: 205 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKTIDGRAPKFTLCMNVTI 264
Query: 103 ------------------------ETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPAR 138
+ GL D VE+LQ+++Q L ++VR+ +P QP R
Sbjct: 265 THADSSHSSPDPNICAGYMLLLILDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTR 324
Query: 139 FGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
FG+LLL R + S+ ++ +FF + + + + L C
Sbjct: 325 FGKLLLRLPSLRTVSSSVIEQLFFVRLICFSGLRWLRC 362
>gi|348505807|ref|XP_003440452.1| PREDICTED: COUP transcription factor 2-like isoform 2 [Oreochromis
niloticus]
Length = 423
Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 232 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 291
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF ++ GL D VE+LQ+++Q
Sbjct: 292 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVAHVESLQEKSQ 351
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 352 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 408
>gi|148234557|ref|NP_001087950.1| Nr2f2 protein [Xenopus laevis]
gi|50416274|gb|AAH78057.1| Nr2f2 protein [Xenopus laevis]
Length = 404
Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 110/177 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 211 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 270
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF + GL D+ +E+LQ+++Q
Sbjct: 271 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTPDACGLSDAAHIESLQEKSQ 330
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 331 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 387
>gi|195434755|ref|XP_002065368.1| GK14705 [Drosophila willistoni]
gi|194161453|gb|EDW76354.1| GK14705 [Drosophila willistoni]
Length = 730
Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/179 (43%), Positives = 111/179 (62%), Gaps = 3/179 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAV+W K L F L DQ +LL+ESW ELFLLN QW++PL + +P+ + V
Sbjct: 546 MAVRWVKCLMPFQTLSKNDQHLLLQESWKELFLLNLAQWTIPL-DLTPILESPLIKERVL 604
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+A+QT +++ + +L RFR + D +E C+KA+ LF ET GL D VE LQDQA
Sbjct: 605 QDEATQT--EMKTIQEILCRFRQITPDGSEVGCMKAIALFAPETAGLCDVQPVEMLQDQA 662
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
Q +L+ HVR +P Q RFGRLLL+ R I ++ ++ +FF +T+ N + +LL DMY
Sbjct: 663 QCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRASTIEALFFKETIGNVPIARLLRDMY 721
>gi|348505805|ref|XP_003440451.1| PREDICTED: COUP transcription factor 2-like isoform 1 [Oreochromis
niloticus]
Length = 417
Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 226 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 285
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF ++ GL D VE+LQ+++Q
Sbjct: 286 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVAHVESLQEKSQ 345
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 346 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 402
>gi|410907275|ref|XP_003967117.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 2 [Takifugu rubripes]
Length = 423
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 232 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 291
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF ++ GL D VE+LQ+++Q
Sbjct: 292 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVAHVESLQEKSQ 351
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 352 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 408
>gi|410907273|ref|XP_003967116.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 1 [Takifugu rubripes]
Length = 417
Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 226 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 285
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF ++ GL D VE+LQ+++Q
Sbjct: 286 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVAHVESLQEKSQ 345
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 346 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 402
>gi|28974300|gb|AAO61416.1| COUP-TF [Branchiostoma floridae]
Length = 443
Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL WSELF+LNA Q S+PL + L A H + +
Sbjct: 252 AVEWARNIPYFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMSA 311
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D+ +++LQ+++Q
Sbjct: 312 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIDSLQEKSQ 371
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 372 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 428
>gi|410911980|ref|XP_003969468.1| PREDICTED: COUP transcription factor 2-like [Takifugu rubripes]
Length = 431
Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+P+ + L A H + +
Sbjct: 240 AVEWARNIPFFPDLQVTDQVALLRLTWSELFVLNAAQCSMPVHVAPLLAAAGLHASPMSA 299
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +RV +++ +++ VD AE++C+KA+VLF ++ GL D VE LQ+++Q
Sbjct: 300 DRVVAFMDHIRVFQEQVEKLKILHVDSAEYSCIKAIVLFTTDACGLSDVAHVEGLQEKSQ 359
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 360 CALEEYVRSQYPNQPNRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 416
>gi|195030592|ref|XP_001988152.1| GH11011 [Drosophila grimshawi]
gi|193904152|gb|EDW03019.1| GH11011 [Drosophila grimshawi]
Length = 719
Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 78/179 (43%), Positives = 110/179 (61%), Gaps = 3/179 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAV+W K L F L DQ +LL+ESW ELFLLN QW++PL + +P+ + V
Sbjct: 535 MAVRWVKCLMPFQTLSKNDQHLLLQESWKELFLLNLAQWTIPL-DLTPILESPLIKERVL 593
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+A+Q +++ + +L RFR + D +E C+KA+ LF ET GL D VE LQDQA
Sbjct: 594 QDEATQI--EMKTIQEILCRFRQITPDGSEVGCMKAIALFAPETAGLCDVQPVEMLQDQA 651
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
Q +L+ HVR +P Q RFGRLLL+ R I +A ++ +FF +T+ N + +LL DMY
Sbjct: 652 QCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFFKETIGNVPIARLLRDMY 710
>gi|24646230|ref|NP_731682.1| seven up, isoform C [Drosophila melanogaster]
gi|18447096|gb|AAL68139.1| AT29920p [Drosophila melanogaster]
gi|23171092|gb|AAF54774.2| seven up, isoform C [Drosophila melanogaster]
gi|220942234|gb|ACL83660.1| svp-PC [synthetic construct]
gi|220952448|gb|ACL88767.1| svp-PC [synthetic construct]
Length = 281
Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 106/177 (59%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WAKN+P F L DQV LL WSELF+LNA Q S+PL + L A H + +
Sbjct: 90 AVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAA 149
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF ++ GL D +E+LQ+++Q
Sbjct: 150 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVTHIESLQEKSQ 209
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RT +P QP RFG+LLL R + S ++ +FF + V T +E L+ DM
Sbjct: 210 CALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDM 266
>gi|1703646|gb|AAB37686.1| xCOUP-TF-B=proposed retinoid receptor-mediated transcriptional
activation negative regulator [Xenopus, stage 17
embryos, Peptide, 405 aa]
Length = 405
Score = 138 bits (348), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 72/178 (40%), Positives = 111/178 (62%), Gaps = 2/178 (1%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASE-HVAAVP 60
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+P L +PL A+ H + +
Sbjct: 214 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMP-LHVAPLSAAAGLHASPMS 272
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++
Sbjct: 273 ADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKS 332
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
Q L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 333 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 390
>gi|13592107|ref|NP_112392.1| nuclear receptor subfamily 2, group F, member 1 [Rattus norvegicus]
gi|506762|gb|AAA83437.1| orphan receptor COUP-TFI [Rattus norvegicus]
Length = 419
Score = 138 bits (347), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 111/177 (62%), Gaps = 1/177 (0%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 227 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPL-HVAVLAAAGLHASPMSA 285
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D+ +E+LQ+++Q
Sbjct: 286 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQ 345
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 346 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 402
>gi|432861727|ref|XP_004069708.1| PREDICTED: COUP transcription factor 2-like isoform 2 [Oryzias
latipes]
Length = 423
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 232 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 291
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF ++ GL + VE+LQ+++Q
Sbjct: 292 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSNVAHVESLQEKSQ 351
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 352 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 408
>gi|344265387|ref|XP_003404766.1| PREDICTED: hypothetical protein LOC100660824 [Loxodonta africana]
Length = 1396
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 110/177 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 1203 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 1262
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ ++ + + VD AE++CLKA+VLF S+ GL D+ +E+LQ+++Q
Sbjct: 1263 DRVVAFMDHIRIFQEQGEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQ 1322
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 1323 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 1379
>gi|432861725|ref|XP_004069707.1| PREDICTED: COUP transcription factor 2-like isoform 1 [Oryzias
latipes]
Length = 417
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 226 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 285
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF ++ GL + VE+LQ+++Q
Sbjct: 286 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSNVAHVESLQEKSQ 345
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 346 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 402
>gi|195443622|ref|XP_002069499.1| GK11542 [Drosophila willistoni]
gi|194165584|gb|EDW80485.1| GK11542 [Drosophila willistoni]
Length = 835
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 106/177 (59%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WAKN+P F L DQV LL WSELF+LNA Q S+PL + L A H + +
Sbjct: 350 AVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAA 409
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF ++ GL D +E+LQ+++Q
Sbjct: 410 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVTHIESLQEKSQ 469
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RT +P QP RFG+LLL R + S ++ +FF + V T +E L+ DM
Sbjct: 470 CALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDM 526
>gi|195116317|ref|XP_002002702.1| GI17531 [Drosophila mojavensis]
gi|193913277|gb|EDW12144.1| GI17531 [Drosophila mojavensis]
Length = 736
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/179 (43%), Positives = 110/179 (61%), Gaps = 3/179 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAV+W K L F L DQ +LL+ESW ELFLLN QW++PL + +P+ + V
Sbjct: 552 MAVRWVKCLMPFQTLSKNDQHLLLQESWKELFLLNLAQWTIPL-DLTPILESPLIKERVL 610
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+A+Q +++ + +L RFR + D +E C+KA+ LF ET GL D VE LQDQA
Sbjct: 611 QDEATQM--EMKTIQEILCRFRQITPDGSEVGCMKAIALFAPETAGLCDVQPVEMLQDQA 668
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
Q +L+ HVR +P Q RFGRLLL+ R I +A ++ +FF +T+ N + +LL DMY
Sbjct: 669 QCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFFKETIGNVPIARLLRDMY 727
>gi|198454165|ref|XP_001359502.2| GA11038 [Drosophila pseudoobscura pseudoobscura]
gi|198132680|gb|EAL28648.2| GA11038 [Drosophila pseudoobscura pseudoobscura]
Length = 777
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 106/177 (59%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WAKN+P F L DQV LL WSELF+LNA Q S+PL + L A H + +
Sbjct: 348 AVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAA 407
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF ++ GL D +E+LQ+++Q
Sbjct: 408 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVTHIESLQEKSQ 467
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RT +P QP RFG+LLL R + S ++ +FF + V T +E L+ DM
Sbjct: 468 CALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDM 524
>gi|195152898|ref|XP_002017373.1| GL22274 [Drosophila persimilis]
gi|194112430|gb|EDW34473.1| GL22274 [Drosophila persimilis]
Length = 777
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 106/177 (59%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WAKN+P F L DQV LL WSELF+LNA Q S+PL + L A H + +
Sbjct: 348 AVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAA 407
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF ++ GL D +E+LQ+++Q
Sbjct: 408 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVTHIESLQEKSQ 467
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RT +P QP RFG+LLL R + S ++ +FF + V T +E L+ DM
Sbjct: 468 CALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDM 524
>gi|195385346|ref|XP_002051367.1| GJ15408 [Drosophila virilis]
gi|194147824|gb|EDW63522.1| GJ15408 [Drosophila virilis]
Length = 726
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/179 (43%), Positives = 110/179 (61%), Gaps = 3/179 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAV+W K L F L DQ +LL+ESW ELFLLN QW++PL + +P+ + V
Sbjct: 542 MAVRWVKCLMPFQTLSKNDQHLLLQESWKELFLLNLAQWTIPL-DLTPILESPLIKERVL 600
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+A+Q +++ + +L RFR + D +E C+KA+ LF ET GL D VE LQDQA
Sbjct: 601 QDEATQM--EMKTIQEILCRFRQITPDGSEVGCMKAIALFAPETAGLCDVQPVEMLQDQA 658
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
Q +L+ HVR +P Q RFGRLLL+ R I +A ++ +FF +T+ N + +LL DMY
Sbjct: 659 QCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFFKETIGNVPIARLLRDMY 717
>gi|91092158|ref|XP_967537.1| PREDICTED: similar to COUP-TF/Svp nuclear hormone receptor
[Tribolium castaneum]
gi|270015100|gb|EFA11548.1| seven up [Tribolium castaneum]
Length = 419
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 108/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL WSELF+LNA Q S+PL + + A H + +
Sbjct: 231 AVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLIAAAGLHASPMCA 290
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ Q +R+ +++ + + VD AE++CLKA+VLF ++ GL D +E++Q+++Q
Sbjct: 291 DRVVQFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVAHIESIQEKSQ 350
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ R+ +P QP RFG+LLL R + SA ++ +FF + V T +E L+ DM
Sbjct: 351 CALEEYCRSQYPNQPTRFGKLLLRLPSLRTVSSAVIEQLFFVRLVGKTPIETLIRDM 407
>gi|390357069|ref|XP_003728922.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Strongylocentrotus purpuratus]
Length = 585
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 97/152 (63%), Gaps = 1/152 (0%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M VKWA+ +P+F LPF DQ ILLEESW ELF+L A QWSL E L +A +
Sbjct: 432 MTVKWARGMPAFLTLPFSDQAILLEESWGELFVLGACQWSL-SAECGQLVSAETLNSLKK 490
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+ + DVR+L ++ R R + DP EFACLKA+ LF+ ++RGL++ + VE LQD+
Sbjct: 491 DQSDTSIQHDVRILQDIVCRVRELQADPMEFACLKALTLFRPDSRGLREVMTVERLQDET 550
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNI 152
Q+ LA++ H+ Q ARFG+LLL+ R++
Sbjct: 551 QLTLAEYNHAHYLTQRARFGKLLLLLPSVRSV 582
>gi|355707891|gb|AES03097.1| nuclear receptor subfamily 2, group F, member 1 [Mustela putorius
furo]
Length = 275
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 108/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+ L + L A H + +
Sbjct: 85 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMQLHVAPLLAAAGLHASPMSA 144
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++Q
Sbjct: 145 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQ 204
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 205 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 261
>gi|195396200|ref|XP_002056720.1| GJ11090 [Drosophila virilis]
gi|194143429|gb|EDW59832.1| GJ11090 [Drosophila virilis]
Length = 787
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 106/177 (59%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WAKN+P F L DQV LL WSELF+LNA Q S+PL + L A H + +
Sbjct: 347 AVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAA 406
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF ++ GL D +E+LQ+++Q
Sbjct: 407 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVTHIESLQEKSQ 466
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RT +P QP RFG+LLL R + S ++ +FF + V T +E L+ DM
Sbjct: 467 CALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDM 523
>gi|195111960|ref|XP_002000544.1| GI10282 [Drosophila mojavensis]
gi|193917138|gb|EDW16005.1| GI10282 [Drosophila mojavensis]
Length = 812
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 106/177 (59%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WAKN+P F L DQV LL WSELF+LNA Q S+PL + L A H + +
Sbjct: 348 AVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAA 407
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF ++ GL D +E+LQ+++Q
Sbjct: 408 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVTHIESLQEKSQ 467
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RT +P QP RFG+LLL R + S ++ +FF + V T +E L+ DM
Sbjct: 468 CALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDM 524
>gi|442618705|ref|NP_001262499.1| seven up, isoform E [Drosophila melanogaster]
gi|440217344|gb|AGB95881.1| seven up, isoform E [Drosophila melanogaster]
Length = 554
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 106/177 (59%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WAKN+P F L DQV LL WSELF+LNA Q S+PL + L A H + +
Sbjct: 352 AVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAA 411
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF ++ GL D +E+LQ+++Q
Sbjct: 412 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVTHIESLQEKSQ 471
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RT +P QP RFG+LLL R + S ++ +FF + V T +E L+ DM
Sbjct: 472 CALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDM 528
>gi|145228046|gb|ABP48744.1| COUP-TF/Svp nuclear hormone receptor [Callosobruchus maculatus]
Length = 419
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 108/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL WSELF+LNA Q S+PL + + A H + +
Sbjct: 231 AVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLIAAAGLHASPMCA 290
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ Q +R+ +++ + + VD AE++CLKA+VLF ++ GL D +E++Q+++Q
Sbjct: 291 DRVVQFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVAHIESIQEKSQ 350
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ R+ +P QP RFG+LLL R + SA ++ +FF + V T +E L+ DM
Sbjct: 351 CALEEYCRSQYPNQPTRFGKLLLRLPSLRTVSSAVIEQLFFVRLVGKTPVETLIRDM 407
>gi|194741798|ref|XP_001953374.1| GF17240 [Drosophila ananassae]
gi|190626433|gb|EDV41957.1| GF17240 [Drosophila ananassae]
Length = 826
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 106/177 (59%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WAKN+P F L DQV LL WSELF+LNA Q S+PL + L A H + +
Sbjct: 357 AVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAA 416
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF ++ GL D +E+LQ+++Q
Sbjct: 417 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVTHIESLQEKSQ 476
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RT +P QP RFG+LLL R + S ++ +FF + V T +E L+ DM
Sbjct: 477 CALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDM 533
>gi|194901808|ref|XP_001980443.1| GG18706 [Drosophila erecta]
gi|195500393|ref|XP_002097354.1| GE26169 [Drosophila yakuba]
gi|190652146|gb|EDV49401.1| GG18706 [Drosophila erecta]
gi|194183455|gb|EDW97066.1| GE26169 [Drosophila yakuba]
Length = 543
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 106/177 (59%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WAKN+P F L DQV LL WSELF+LNA Q S+PL + L A H + +
Sbjct: 352 AVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAA 411
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF ++ GL D +E+LQ+++Q
Sbjct: 412 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVTHIESLQEKSQ 471
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RT +P QP RFG+LLL R + S ++ +FF + V T +E L+ DM
Sbjct: 472 CALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDM 528
>gi|21744271|gb|AAM76194.1| RE08410p [Drosophila melanogaster]
gi|220947910|gb|ACL86498.1| svp-PC [synthetic construct]
gi|220957212|gb|ACL91149.1| svp-PC [synthetic construct]
Length = 543
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 106/177 (59%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WAKN+P F L DQV LL WSELF+LNA Q S+PL + L A H + +
Sbjct: 352 AVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAA 411
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF ++ GL D +E+LQ+++Q
Sbjct: 412 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVTHIESLQEKSQ 471
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RT +P QP RFG+LLL R + S ++ +FF + V T +E L+ DM
Sbjct: 472 CALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDM 528
>gi|17737921|ref|NP_524325.1| seven up, isoform B [Drosophila melanogaster]
gi|112858|sp|P16375.1|7UP1_DROME RecName: Full=Steroid receptor seven-up, isoforms B/C; AltName:
Full=Nuclear receptor subfamily 2 group F member 3,
isoforms B/C
gi|158519|gb|AAA62770.1| seven-up protein type 1 [Drosophila melanogaster]
gi|7299588|gb|AAF54773.1| seven up, isoform B [Drosophila melanogaster]
Length = 543
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 106/177 (59%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WAKN+P F L DQV LL WSELF+LNA Q S+PL + L A H + +
Sbjct: 352 AVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAA 411
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF ++ GL D +E+LQ+++Q
Sbjct: 412 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVTHIESLQEKSQ 471
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RT +P QP RFG+LLL R + S ++ +FF + V T +E L+ DM
Sbjct: 472 CALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDM 528
>gi|350416858|ref|XP_003491138.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like, partial
[Bombus impatiens]
Length = 324
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 106/177 (59%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL WSELF+LNA Q S+PL + L A H + +
Sbjct: 133 AVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAA 192
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF ++ GL D +E+LQ+++Q
Sbjct: 193 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVAHIESLQEKSQ 252
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RT +P QP RFG+LLL R + S ++ +FF + V T +E L+ DM
Sbjct: 253 CALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDM 309
>gi|363745928|ref|XP_003643465.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-B-like
[Gallus gallus]
Length = 300
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 107/176 (60%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WA+N+P F LP DQV LL SWSELF+LNA Q +LPL + L A H + +
Sbjct: 110 VEWARNIPFFPELPVSDQVALLRLSWSELFVLNAAQSALPLHMAPLLAAAGFHASPMSAD 169
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ +R+ +++ + VD AE++CLKA+ LF + GL D VE LQ++AQV
Sbjct: 170 RVVSFMDQIRIFQDQVEKLNRLQVDSAEYSCLKAIALFTPDACGLSDPAHVEGLQEKAQV 229
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P+QP RFGRLLL R +P+A + +FF + V T +E L+ DM
Sbjct: 230 ALTEYVRSQYPSQPQRFGRLLLRLPALRAVPAALISQLFFMRLVGKTPIETLIRDM 285
>gi|390335482|ref|XP_003724162.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A isoform
1 [Strongylocentrotus purpuratus]
gi|390335484|ref|XP_782295.3| PREDICTED: nuclear receptor subfamily 2 group F member 1-A isoform
2 [Strongylocentrotus purpuratus]
Length = 472
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/178 (39%), Positives = 109/178 (61%), Gaps = 2/178 (1%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASE-HVAAVP 60
AV+WA+N+P F L DQV LL WSELF+LNA Q S+P L +PL AS H + +
Sbjct: 281 AVEWARNIPFFPDLQVTDQVALLRMCWSELFVLNASQCSMP-LHVAPLLAASGLHASPMS 339
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+ +R+ +++ + + VD AE++C+KA+VLF S+ GL D+ +E LQ+++
Sbjct: 340 ADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCIKAIVLFTSDACGLSDAAHIEALQEKS 399
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
Q L ++VR+ +P QP RFG+LLL R + S ++ +FF + V T +E L+ DM
Sbjct: 400 QCALEEYVRSQYPNQPNRFGKLLLRLPSLRTVSSHVIEQLFFVRLVGKTPIETLIRDM 457
>gi|340729306|ref|XP_003402945.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like [Bombus
terrestris]
Length = 400
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 106/177 (59%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL WSELF+LNA Q S+PL + L A H + +
Sbjct: 209 AVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAA 268
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF ++ GL D +E+LQ+++Q
Sbjct: 269 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVTHIESLQEKSQ 328
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RT +P QP RFG+LLL R + S ++ +FF + V T +E L+ DM
Sbjct: 329 CALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDM 385
>gi|328791488|ref|XP_392402.3| PREDICTED: steroid receptor seven-up, isoforms B/C, partial [Apis
mellifera]
Length = 344
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 106/177 (59%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL WSELF+LNA Q S+PL + L A H + +
Sbjct: 153 AVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAA 212
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF ++ GL D +E+LQ+++Q
Sbjct: 213 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVAHIESLQEKSQ 272
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RT +P QP RFG+LLL R + S ++ +FF + V T +E L+ DM
Sbjct: 273 CALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDM 329
>gi|195055334|ref|XP_001994574.1| GH17319 [Drosophila grimshawi]
gi|193892337|gb|EDV91203.1| GH17319 [Drosophila grimshawi]
Length = 542
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 105/177 (59%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WAKN+P F L DQV LL WSELF+LNA Q S+PL + L A H + +
Sbjct: 351 AVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAA 410
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF ++ GL D +E LQ+++Q
Sbjct: 411 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVQHIETLQEKSQ 470
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RT +P QP RFG+LLL R + S ++ +FF + V T +E L+ DM
Sbjct: 471 CALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDM 527
>gi|346456835|dbj|BAK78983.1| COUP-TF homolog [Lethenteron camtschaticum]
Length = 408
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL WSELF+LNA Q ++PL + L A H + +
Sbjct: 217 AVEWARNIPFFPDLQITDQVALLRLVWSELFVLNAAQCAMPLHVAPLLAAAGLHASPMSA 276
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++C+KA+VLF ++ GL D+ +E+LQ+++Q
Sbjct: 277 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCIKAIVLFTTDACGLSDAAHIESLQEKSQ 336
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 337 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 393
>gi|383855696|ref|XP_003703346.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like [Megachile
rotundata]
Length = 394
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 106/177 (59%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL WSELF+LNA Q S+PL + L A H + +
Sbjct: 203 AVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAA 262
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF ++ GL D +E+LQ+++Q
Sbjct: 263 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVAHIESLQEKSQ 322
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RT +P QP RFG+LLL R + S ++ +FF + V T +E L+ DM
Sbjct: 323 CALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDM 379
>gi|14090242|dbj|BAB55582.1| seven-up alpha [Bombyx mori]
Length = 421
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 106/177 (59%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL WSELF+LNA Q S+PL + L A H + +
Sbjct: 230 AVEWARNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAA 289
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF ++ GL D +E+LQ+++Q
Sbjct: 290 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVTHIESLQEKSQ 349
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RT +P QP RFG+LLL R + S ++ +FF + V T +E L+ DM
Sbjct: 350 CALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDM 406
>gi|312385998|gb|EFR30376.1| hypothetical protein AND_00091 [Anopheles darlingi]
Length = 787
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 109/185 (58%), Gaps = 12/185 (6%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLP-----LLESSPLFNASEH 55
M+V+W + L F L DQ +LL+ESW ELFLLN QWS+P LL+S H
Sbjct: 577 MSVRWVRCLIPFQTLSKSDQHLLLQESWKELFLLNFAQWSVPWDLGGLLDS-------PH 629
Query: 56 VAAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVEN 115
V + + + +++ + +L RFR + D +E C+KAV+LF ET L D VE
Sbjct: 630 VRDRLPQQDAASQLEMKTMQEILCRFRQISPDLSELGCMKAVILFSPETSELCDVQPVEM 689
Query: 116 LQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLL 175
LQDQAQ +LA+HVR +P QP RFGRLLL+ R I S ++ +FF +T+ + +LL
Sbjct: 690 LQDQAQCVLAEHVRVRYPRQPTRFGRLLLLLPLLRTIRSTTIETLFFKETIGTVPISRLL 749
Query: 176 CDMYK 180
DMY+
Sbjct: 750 IDMYQ 754
>gi|195146576|ref|XP_002014260.1| GL19043 [Drosophila persimilis]
gi|194106213|gb|EDW28256.1| GL19043 [Drosophila persimilis]
Length = 819
Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 77/179 (43%), Positives = 110/179 (61%), Gaps = 3/179 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAV+W K L F L DQ +LL+ESW ELFLLN QW++PL + +P+ + V
Sbjct: 633 MAVRWVKCLMPFQTLSKNDQHLLLQESWKELFLLNLAQWTIPL-DLTPILESPLIKERVL 691
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+A+QT +++ + +L RFR + D +E C+KA+ LF ET GL D VE LQDQA
Sbjct: 692 QDEATQT--EMKTIQEILCRFRQITPDGSEVGCMKAIALFAPETAGLCDVQPVEMLQDQA 749
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
Q +L+ HVR + Q RFGRLLL+ R I ++ ++ +FF +T+ N + +LL DMY
Sbjct: 750 QCILSDHVRLRYSRQATRFGRLLLLLPSLRTIRASTIEALFFKETIGNVPIARLLRDMY 808
>gi|307204825|gb|EFN83383.1| Steroid receptor seven-up, isoforms B/C [Harpegnathos saltator]
Length = 458
Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 105/177 (59%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL WSELF+LNA Q S+PL + + A H +
Sbjct: 281 AVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLIAAAGLHATPMAA 340
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF ++ GL D +E+LQ+++Q
Sbjct: 341 DRVVAFMDHIRIFQEQVEKLKALHVDTAEYSCLKAIVLFTTDACGLSDVAHIESLQEKSQ 400
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RT +P QP RFG+LLL R + S ++ +FF + V T +E L+ DM
Sbjct: 401 CALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDM 457
>gi|225581113|gb|ACN94685.1| GA21482 [Drosophila miranda]
Length = 690
Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 77/179 (43%), Positives = 110/179 (61%), Gaps = 3/179 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAV+W K L F L DQ +LL+ESW ELFLLN QW++PL + +P+ + V
Sbjct: 504 MAVRWVKCLMPFQTLSKNDQHLLLQESWKELFLLNLAQWTIPL-DLTPILESPLIKERVL 562
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+A+QT +++ + +L RFR + D +E C+KA+ LF ET GL D VE LQDQA
Sbjct: 563 QDEATQT--EMKTIQEILCRFRQITPDGSEVGCMKAIALFAPETAGLCDVQPVEMLQDQA 620
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
Q +L+ HVR + Q RFGRLLL+ R I ++ ++ +FF +T+ N + +LL DMY
Sbjct: 621 QCILSDHVRLRYSRQATRFGRLLLLLPSLRTIRASTIEALFFKETIGNVPIARLLRDMY 679
>gi|198475944|ref|XP_001357213.2| GA21482 [Drosophila pseudoobscura pseudoobscura]
gi|198137475|gb|EAL34282.2| GA21482 [Drosophila pseudoobscura pseudoobscura]
Length = 691
Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 77/179 (43%), Positives = 110/179 (61%), Gaps = 3/179 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAV+W K L F L DQ +LL+ESW ELFLLN QW++PL + +P+ + V
Sbjct: 505 MAVRWVKCLMPFQTLSKNDQHLLLQESWKELFLLNLAQWTIPL-DLTPILESPLIKERVL 563
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+A+QT +++ + +L RFR + D +E C+KA+ LF ET GL D VE LQDQA
Sbjct: 564 QDEATQT--EMKTIQEILCRFRQITPDGSEVGCMKAIALFAPETAGLCDVQPVEMLQDQA 621
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
Q +L+ HVR + Q RFGRLLL+ R I ++ ++ +FF +T+ N + +LL DMY
Sbjct: 622 QCILSDHVRLRYSRQATRFGRLLLLLPSLRTIRASTIEALFFKETIGNVPIARLLRDMY 680
>gi|242013777|ref|XP_002427577.1| Orphan nuclear receptor NR2E1, putative [Pediculus humanus
corporis]
gi|212511992|gb|EEB14839.1| Orphan nuclear receptor NR2E1, putative [Pediculus humanus
corporis]
Length = 403
Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 77/199 (38%), Positives = 117/199 (58%), Gaps = 21/199 (10%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M V WAKN+P+F L ++DQ++LLEESW ELF+L+A Q+ LPL E L A V A
Sbjct: 204 MNVTWAKNVPAFTRLNYKDQLLLLEESWRELFVLSASQFMLPL-ELVDLLTAHTTVTA-N 261
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKS------------------ 102
+ KA A +V+ L +F+ + VD E+ACL+A+VLFK+
Sbjct: 262 SEKALTIAQEVKQFQETLIKFKQLHVDIHEYACLRAIVLFKTSFDPSNNTVTSSTAPSSS 321
Query: 103 -ETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIF 161
E + L D +V +QD Q+ L +++ HP QP RFG+LLL+ R++ + ++ +F
Sbjct: 322 GEGKTLHDLAEVAAVQDHTQLTLNKYISAAHPTQPFRFGKLLLLLPSLRSVSNNTIEELF 381
Query: 162 FAKTVANTSMEKLLCDMYK 180
F +T+ N +E+++CDMYK
Sbjct: 382 FRRTIGNIPIERIICDMYK 400
>gi|221120884|ref|XP_002159396.1| PREDICTED: COUP transcription factor 2-like [Hydra magnipapillata]
Length = 500
Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 105/177 (59%), Gaps = 2/177 (1%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+W++N+P F L DQ+ LL W ELF+LN Q + L++ S L N+ ++ A P
Sbjct: 308 AVEWSRNIPFFPNLSLTDQIALLRLCWKELFILNVAQCPM-LIDVSHLLNSQMNIYASPE 366
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
AS VR+L L + R + VDPAEFACLKA+V+F S+ GL D +E LQ++
Sbjct: 367 HMAS-FLDQVRILKEQLNKLRAMHVDPAEFACLKAIVVFSSDAPGLNDPQYIETLQEKTY 425
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L +++T +P QP RFG+LLL R I + ++ +FF + V T +E L+ D+
Sbjct: 426 FALEDYIKTQYPLQPTRFGKLLLRFPSIRIISATVIEQLFFVRLVGKTPIETLIRDI 482
>gi|403256259|ref|XP_003920806.1| PREDICTED: COUP transcription factor 1 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 281
Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 108/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 88 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 147
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CL VV+F + GL D+ +E+LQ+++Q
Sbjct: 148 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLSPVVVFTFDACGLSDAAHIESLQEKSQ 207
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 208 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 264
>gi|193598915|ref|XP_001944021.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like
[Acyrthosiphon pisum]
Length = 446
Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 106/177 (59%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL WSELF+LNA Q S+PL + L A H + +
Sbjct: 255 AVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAA 314
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF ++ GL D +E+LQ+++Q
Sbjct: 315 DRVVAFMDHIRIFQEQVEKLKALHVDAAEYSCLKAIVLFTTDACGLSDVAHIESLQEKSQ 374
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RT +P QP RFG+LLL R + S ++ +FF + V T +E L+ DM
Sbjct: 375 CALEEYCRTQYPNQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDM 431
>gi|345325512|ref|XP_001506145.2| PREDICTED: nuclear receptor subfamily 2 group F member 1-B-like
[Ornithorhynchus anatinus]
Length = 342
Score = 135 bits (339), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 107/176 (60%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WA+N+P F LP DQV LL SWSELF+LNA Q +LPL + L A H + +
Sbjct: 152 VEWARNIPFFPELPVSDQVSLLRLSWSELFVLNAAQSALPLHMAPLLAAAGFHASPMSAD 211
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ +RV +++ + VD AE++CLKA+ LF + GL D VE+LQ++AQV
Sbjct: 212 RVVSFMDQIRVFQDQVEKLSRLQVDSAEYSCLKAIALFTPDACGLSDPAHVESLQEKAQV 271
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR +P+QP RFGRLLL R +P++ + +FF + V T +E L+ DM
Sbjct: 272 ALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDM 327
>gi|347968053|ref|XP_312394.4| AGAP002544-PA [Anopheles gambiae str. PEST]
gi|333468184|gb|EAA07520.4| AGAP002544-PA [Anopheles gambiae str. PEST]
Length = 515
Score = 135 bits (339), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 106/177 (59%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL WSELF+LNA Q S+PL + L A H + +
Sbjct: 324 AVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAA 383
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF ++ GL D +E+LQ+++Q
Sbjct: 384 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVAHIESLQEKSQ 443
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ R+ +P QP RFG+LLL R + S ++ +FF + V T +E L+ DM
Sbjct: 444 CALEEYCRSQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDM 500
>gi|242020457|ref|XP_002430670.1| retinoid X receptor, putative [Pediculus humanus corporis]
gi|212515850|gb|EEB17932.1| retinoid X receptor, putative [Pediculus humanus corporis]
Length = 344
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 103/168 (61%), Gaps = 7/168 (4%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
+ VKWA+++PSF L F DQ ILLE +W+ELF+L+A QW+LP+ E + V ++P
Sbjct: 180 LTVKWARSIPSFLQLTFHDQSILLENTWNELFILSAAQWTLPVDEEYLV-----RVTSLP 234
Query: 61 NGKASQT-AADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
N KA + +V+ ++ +F + VD E+ACLKA+ LFK+ET LKD LQVE LQDQ
Sbjct: 235 NNKAKEKFEREVKNFKKIITKFNNLNVDYTEYACLKALTLFKAETSELKDRLQVEMLQDQ 294
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVA 167
+ML + T + ARFG+LL++ + ++ + F KT+
Sbjct: 295 THIMLHDYC-TSQDSHKARFGKLLMLLPSVNGLSKDFIEELLFRKTIG 341
>gi|84617148|emb|CAH59197.1| seven-up protein [Cupiennius salei]
Length = 353
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 106/177 (59%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL WSELF+LNA Q S+PL + L A H + +
Sbjct: 162 AVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAA 221
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF ++ GL D +E+LQ+++Q
Sbjct: 222 DRVVAFMDHIRIFQEQVEKLKALQVDAAEYSCLKAIVLFTTDACGLSDVAHIESLQEKSQ 281
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RT +P +P RFG+LLL R + S ++ +FF + V T +E L+ DM
Sbjct: 282 CALEEYCRTQYPNRPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDM 338
>gi|118343705|ref|NP_001071673.1| nuclear receptor [Ciona intestinalis]
gi|70569140|dbj|BAE06356.1| nuclear receptor [Ciona intestinalis]
Length = 416
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 110/177 (62%), Gaps = 1/177 (0%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV +L+ WSELF+LNA Q +PL +PL A+ ++
Sbjct: 225 AVEWARNIPFFPELQVTDQVAMLKWVWSELFVLNAAQSHMPL-HVAPLLAAAGLHTSMSA 283
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ ++R + + VD AE++CLKA+VLF +++ GL D +E++Q+++Q
Sbjct: 284 DRVMTFMDHIRIFQEQVERLKSLHVDSAEYSCLKAIVLFTADSHGLSDMTHIESVQEKSQ 343
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR +P QP+RFG+LLL R + ++ ++ +FF + V T +E L+ DM
Sbjct: 344 CALEEYVRHQYPNQPSRFGKLLLRLPSLRTVSASAIEQLFFVRLVGKTPIETLIRDM 400
>gi|41351197|gb|AAH65651.1| Nr2f1b protein [Danio rerio]
Length = 388
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 106/177 (59%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 197 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQSSMPLHVAPLLAAAGLHASPMSA 256
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R +++ + + VD AE++C KA+VLF S+ GL D +E LQ+++Q
Sbjct: 257 DRVVAFMDHIRFFQEQVEKLKALQVDSAEYSCAKAIVLFTSDACGLSDIPHIEGLQEKSQ 316
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 317 CALEEYVRSQYPNQPTRFGKLLLRLPALRMVSSSVIEQLFFVRLVGKTPIETLIRDM 373
>gi|55925486|ref|NP_956886.1| nuclear receptor subfamily 2 group F member 1-B [Danio rerio]
gi|82202654|sp|Q6PH18.1|N2F1B_DANRE RecName: Full=Nuclear receptor subfamily 2 group F member 1-B;
AltName: Full=COUP transcription factor 1-B;
Short=COUP-TFalpha-B
gi|34785135|gb|AAH56748.1| Nuclear receptor subfamily 2, group F, member 1b [Danio rerio]
Length = 389
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 106/177 (59%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 198 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQSSMPLHVAPLLAAAGLHASPMSA 257
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R +++ + + VD AE++C KA+VLF S+ GL D +E LQ+++Q
Sbjct: 258 DRVVAFMDHIRFFQEQVEKLKALQVDSAEYSCAKAIVLFTSDACGLSDIPHIEGLQEKSQ 317
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 318 CALEEYVRSQYPNQPTRFGKLLLRLPALRMVSSSVIEQLFFVRLVGKTPIETLIRDM 374
>gi|12484038|gb|AAG53940.1| nuclear hormone receptor [Aedes aegypti]
Length = 493
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 105/177 (59%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL WSELF+LNA Q S+PL + L A H + +
Sbjct: 302 AVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAA 361
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF ++ GL D +E+LQ+++Q
Sbjct: 362 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVAHIESLQEKSQ 421
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ R+ +P QP RFG+LLL R + S ++ FF + V T +E L+ DM
Sbjct: 422 CALEEYCRSQYPNQPTRFGKLLLRLPSLRTVSSQVIEQFFFVRLVGKTPIETLIRDM 478
>gi|391329670|ref|XP_003739292.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Metaseiulus occidentalis]
Length = 201
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/181 (42%), Positives = 109/181 (60%), Gaps = 12/181 (6%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWS--LPLLESSPLFNASEHVAA 58
M ++W K LP+F L DQV LLEESW +LFLL WS + L+ S P AA
Sbjct: 25 MVIRWVKCLPTFQTLSRGDQVCLLEESWRDLFLLYMSHWSPGVDLISSLP--------AA 76
Query: 59 VPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQD 118
V + + + ++ + V++R R + D E +CLKA+VLFK ET GL D+ VE LQD
Sbjct: 77 VHHDELN--PIEIHYVQDVMRRLRQLSPDDTECSCLKAIVLFKPETMGLCDTHPVEMLQD 134
Query: 119 QAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
+AQ +L +VR +P QP RFGRLLL+ R+I + ++ +FF T+ N +EK+L +M
Sbjct: 135 RAQCVLGDYVRERYPRQPTRFGRLLLLLPILRSISNVFIEKLFFKGTIGNIRVEKILGEM 194
Query: 179 Y 179
Y
Sbjct: 195 Y 195
>gi|405977938|gb|EKC42362.1| Nuclear receptor subfamily 2 group F member 1-A [Crassostrea gigas]
Length = 435
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 110/194 (56%), Gaps = 17/194 (8%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL SWSELF+LNA Q S+PL + L A H + +
Sbjct: 227 AVEWARNIPFFPELQITDQVALLRVSWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMAA 286
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETR---------------- 105
+ +R+ +++ + + VD AE++CLKA+VLF S+ +
Sbjct: 287 DRVVAFMDHIRIFQEQVEKLKTLHVDSAEYSCLKAIVLFSSDRKPEPVPSQRPAVNGYNA 346
Query: 106 -GLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAK 164
GL D+ +EN+Q+++Q L ++VR+ +P QP RFG+LLL R + + ++ +FF +
Sbjct: 347 CGLSDATHIENIQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSAQVIEQLFFVR 406
Query: 165 TVANTSMEKLLCDM 178
V T +E L+ DM
Sbjct: 407 LVGKTPIETLIRDM 420
>gi|76364250|gb|ABA41639.1| COUP transcription factor-like protein [Strongylocentrotus
purpuratus]
Length = 336
Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 109/179 (60%), Gaps = 3/179 (1%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASE-HVAAVP 60
AV+WA+N+P F L DQV LL WSELF+LNA Q S+P L +PL AS H + +
Sbjct: 144 AVEWARNIPFFPDLQVTDQVALLRMCWSELFVLNASQCSMP-LHVAPLLAASGLHASPMS 202
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKS-ETRGLKDSLQVENLQDQ 119
+ +R+ +++ + + VD AE++C+KA+VLF S + GL D+ +E LQ++
Sbjct: 203 ADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCIKAIVLFTSTDACGLSDAAHIEALQEK 262
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
+Q L ++VR+ +P QP RFG+LLL R + S ++ +FF + V T +E L+ DM
Sbjct: 263 SQCALEEYVRSQYPNQPNRFGKLLLRLPSLRTVSSHVIEQLFFVRLVGKTPIETLIRDM 321
>gi|440907586|gb|ELR57717.1| COUP transcription factor 1, partial [Bos grunniens mutus]
Length = 368
Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 110/177 (62%), Gaps = 1/177 (0%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 176 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 235
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VL ++ GL D+ +E+LQ+++Q
Sbjct: 236 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVL-TADACGLSDAAHIESLQEKSQ 294
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 295 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 351
>gi|284424952|dbj|BAI67122.1| nuclear receptor [Taeniopygia guttata]
Length = 181
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 102/167 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 15 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 74
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++Q
Sbjct: 75 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQ 134
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVAN 168
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V
Sbjct: 135 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGK 181
>gi|126324155|ref|XP_001369925.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Monodelphis domestica]
Length = 732
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 76/176 (43%), Positives = 106/176 (60%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WA+N+P F LP DQV LL SWSELF+LNA Q +LPL + L A H A +
Sbjct: 542 VEWARNIPFFPELPVADQVALLRLSWSELFVLNAAQSALPLHMAPLLAAAGFHAAPMAAD 601
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ +RV + + + VD AE++CLKA+ LF + GL D VE+LQ++AQV
Sbjct: 602 RVVSFMDQIRVFQEQVDKLNRLQVDSAEYSCLKAIALFTPDACGLSDPAHVESLQEKAQV 661
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR +P+QP RFGRLLL R +P+A + +FF + V T +E L+ DM
Sbjct: 662 ALTEYVRAQYPSQPQRFGRLLLRLPALRAVPAALISQLFFMRLVGKTPIETLIRDM 717
>gi|321477464|gb|EFX88423.1| hypothetical protein DAPPUDRAFT_311322 [Daphnia pulex]
Length = 364
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 105/177 (59%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL WSELF+LNA Q S+PL + L A H + +
Sbjct: 173 AVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAA 232
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF ++ GL D +E+LQ+++Q
Sbjct: 233 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVGHIESLQEKSQ 292
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RT + QP RFG+LLL R + S ++ +FF + V T +E L+ DM
Sbjct: 293 CALEEYCRTQYANQPVRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDM 349
>gi|224151159|ref|XP_002199588.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Taeniopygia guttata]
Length = 318
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 104/176 (59%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WA+N+P F LP DQV LL SWSELF+LNA Q +LPL + L A H + +
Sbjct: 128 VEWARNIPFFPELPVSDQVALLRLSWSELFVLNAAQSALPLHMAPLLAAAGFHASPMSAD 187
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ +RV +++ + VD AE++CLKA+ LF + GL D VE LQ++AQV
Sbjct: 188 RVVAFMDQIRVFQEQVEKLNRLQVDSAEYSCLKAIALFTPDACGLSDPAHVETLQEKAQV 247
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ R PAQP RFGRLLL R +P+A + +FF + V T +E L+ DM
Sbjct: 248 ALTEYERAQFPAQPQRFGRLLLRLPALRAVPAALISQLFFMRLVGKTPIETLIRDM 303
>gi|395825625|ref|XP_003786025.1| PREDICTED: COUP transcription factor 1 [Otolemur garnettii]
Length = 267
Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 103/163 (63%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 80 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 139
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D+ +E+LQ+++Q
Sbjct: 140 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQ 199
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAK 164
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF +
Sbjct: 200 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVR 242
>gi|410924582|ref|XP_003975760.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Takifugu rubripes]
Length = 404
Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 106/176 (60%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WA+N+P F LP DQV LL SWSELF+LNA Q +LPL + L A H + +
Sbjct: 214 VEWARNIPYFPELPVSDQVALLRLSWSELFILNAAQSALPLHMAPLLAAAGFHSSPMSAE 273
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ VRV + + + VD AE++CLKA+ LF + GL D + VE+LQ++AQV
Sbjct: 274 RVVSFMDQVRVFQDQVDKLTRLQVDSAEYSCLKAIALFSPDACGLTDPVHVESLQEKAQV 333
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ R +P+QP RFGRLLL R +P++ + +FF + V T +E L+ DM
Sbjct: 334 ALTEYERMQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDM 389
>gi|74145119|dbj|BAE27426.1| unnamed protein product [Mus musculus]
Length = 390
Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 104/176 (59%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WA++ P F LP DQV LL SWSELF+LNA Q +LPL + L A H A +
Sbjct: 201 VEWARHAPFFPELPAADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAE 260
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A VR + + + VD AE+ CLKA+ LF + GL D VE+LQ++AQV
Sbjct: 261 RAVAFMDQVRAFQEQVDKLGRLQVDAAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQV 320
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR +P+QP RFGRLLL R +P++ + +FF + V T +E L+ DM
Sbjct: 321 ALTEYVRAQYPSQPQRFGRLLLRLPAMRAVPASLISQLFFMRLVGKTPIETLIRDM 376
>gi|270008322|gb|EFA04770.1| hypothetical protein TcasGA2_TC030676 [Tribolium castaneum]
Length = 357
Score = 132 bits (331), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 73/180 (40%), Positives = 102/180 (56%), Gaps = 22/180 (12%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
+A+KWAK++PSF L +RDQ ILLEESWSELF+L A QW+ P+ E+
Sbjct: 197 LAIKWAKSIPSFLQLSYRDQSILLEESWSELFVLTAAQWAFPVDET-------------- 242
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
D R L ++ R L+ VD E ACLKA+VLFKSE RGL + VE LQDQ
Sbjct: 243 ------LEEDARRLREIITRLTLLRVDHTEHACLKALVLFKSECRGLCEPSHVELLQDQT 296
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
VML ++ RFG+LLL + + ++ + F +TV + ++++LL D+ K
Sbjct: 297 HVMLNEYCNQRQTK--GRFGKLLLTLPAVQAVTRRGLEELIFRQTVGDVAIDRLLTDLAK 354
>gi|16797884|gb|AAL29200.1|AF323687_1 nuclear receptor AmNR7 [Acropora millepora]
Length = 368
Score = 132 bits (331), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 107/177 (60%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL WSELF+LNA Q +PL + L +A H +
Sbjct: 177 AVEWARNIPFFPDLAVTDQVALLRLVWSELFVLNAAQCPMPLQVAPLLASAGIHSNHMSP 236
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +VR+ ++++R + VD AEFACLKA+VLF S+ GL D +E+LQ++ Q
Sbjct: 237 DRMVTFMDNVRIFQEQIEKYRNLHVDAAEFACLKAIVLFTSDASGLTDPQYIESLQEKTQ 296
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ R +P QP RFG+LLL R+I S+ V+ +FF + V T ++ LL DM
Sbjct: 297 CALEEYTRNQYPNQPTRFGKLLLRLPSLRSINSSIVEQLFFVRLVGKTPIDTLLRDM 353
>gi|156374224|ref|XP_001629708.1| predicted protein [Nematostella vectensis]
gi|156216714|gb|EDO37645.1| predicted protein [Nematostella vectensis]
Length = 366
Score = 132 bits (331), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 105/177 (59%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL WSELF+LNA Q +PL + L A H +
Sbjct: 175 AVEWARNIPFFPDLAVTDQVALLRLVWSELFVLNAAQCPMPLQVAPLLATAGIHSNHMSP 234
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ ++R+ +++ R + VD AEFACLKA+VLF S+ GL D +E+LQ++ Q
Sbjct: 235 DRMVSFMDNIRIFQEQVEKLRNLHVDAAEFACLKAIVLFTSDASGLTDPQYIESLQEKTQ 294
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ R +P QP RFG+LLL R+I S+ V+ +FF + V T +E LL DM
Sbjct: 295 CALEEYTRNQYPNQPTRFGKLLLRLPSLRSISSSVVEQLFFVRLVGKTPIETLLRDM 351
>gi|432910588|ref|XP_004078428.1| PREDICTED: nuclear receptor subfamily 2 group F member 5-like
[Oryzias latipes]
Length = 404
Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 108/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WAKN+P F L DQV LL SWSELF+LNA Q S+PL + L A H + +
Sbjct: 198 AVEWAKNIPFFPDLQLMDQVALLRMSWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 257
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +RV +++ + + VD AE++CLK++VLF S+ GL D VE++Q+++Q
Sbjct: 258 ERVVAFMDHIRVFQEQVEKLKALQVDTAEYSCLKSIVLFTSDAMGLSDVAHVESIQEKSQ 317
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR +P+QP RFGRLLL R + S ++ +FF + V T +E LL DM
Sbjct: 318 CALEEYVRNQYPSQPNRFGRLLLRLPSLRIVSSPVIEQLFFVRLVGKTPIETLLRDM 374
>gi|410904505|ref|XP_003965732.1| PREDICTED: nuclear receptor subfamily 2 group F member 5-like
[Takifugu rubripes]
Length = 404
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 108/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WAKN+P F L DQV LL SWSELF+LNA Q S+PL + L A H + +
Sbjct: 198 AVEWAKNIPFFPDLQLMDQVALLRMSWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 257
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +RV +++ + + VD AE++CLK++VLF S+ GL D VE++Q+++Q
Sbjct: 258 ERVVAFMDHIRVFQEQVEKLKALQVDTAEYSCLKSIVLFTSDAMGLSDVAHVESIQEKSQ 317
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR +P+QP RFGRLLL R + S ++ +FF + V T +E LL DM
Sbjct: 318 CALEEYVRNQYPSQPNRFGRLLLRLPSLRIVSSPVIEQLFFVRLVGKTPIETLLRDM 374
>gi|403182505|gb|EAT46025.2| AAEL002765-PA, partial [Aedes aegypti]
Length = 274
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 106/178 (59%), Gaps = 1/178 (0%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL WSELF+LNA Q S+PL + L A H + +
Sbjct: 82 AVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAA 141
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKS-ETRGLKDSLQVENLQDQA 120
+ +R+ +++ + + VD AE++CLKA+VLF + + GL D +E+LQ+++
Sbjct: 142 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTADACGLSDVAHIESLQEKS 201
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
Q L ++ R+ +P QP RFG+LLL R + S ++ +FF + V T +E L+ DM
Sbjct: 202 QCALEEYCRSQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDM 259
>gi|432913184|ref|XP_004078947.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Oryzias latipes]
Length = 406
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 105/176 (59%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WA+N+P F LP DQV LL SWSELF+LNA Q SLPL + L A H + +
Sbjct: 216 VEWARNIPYFPELPVSDQVALLRLSWSELFILNAAQSSLPLHMAPLLAAAGFHSSPMSAE 275
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ VR+ + + + VD AE++CLKA+ LF + GL D + VE+LQ++AQV
Sbjct: 276 RVVSFMDQVRMFQDQVDKLTRLQVDSAEYSCLKAIALFSPDACGLTDPVHVESLQEKAQV 335
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ R +P+QP RFGRLLL R +P+ + +FF + V T +E L+ DM
Sbjct: 336 ALTEYERMQYPSQPQRFGRLLLRLPALRAVPANLISQLFFMRLVGKTPIETLIRDM 391
>gi|348511313|ref|XP_003443189.1| PREDICTED: nuclear receptor subfamily 2 group F member 5-like
[Oreochromis niloticus]
Length = 404
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 108/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WAKN+P F L DQV LL SWSELF+LNA Q S+PL + L A H + +
Sbjct: 198 AVEWAKNIPFFPDLQLMDQVALLRMSWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 257
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +RV +++ + + VD AE++CLK++VLF S+ GL D VE++Q+++Q
Sbjct: 258 ERVVAFMDHIRVFQEQVEKLKALQVDTAEYSCLKSIVLFTSDAMGLSDVAHVESIQEKSQ 317
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR +P+QP RFGRLLL R + S ++ +FF + V T +E LL DM
Sbjct: 318 CALEEYVRNQYPSQPNRFGRLLLRLPSLRIVSSPVIEQLFFVRLVGKTPIETLLRDM 374
>gi|327287768|ref|XP_003228600.1| PREDICTED: COUP transcription factor 2-like, partial [Anolis
carolinensis]
Length = 266
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 108/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
A++WAKN+P F DQV LL +WSELF+LNA Q ++PL + L A H + +P
Sbjct: 75 AIEWAKNIPFFPDFQLADQVCLLRMTWSELFVLNAAQCAMPLHVAPLLAAAGLHASPMPA 134
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +RV +++ + + VD AE++CLKA+VLF + GL D VEN+Q+++Q
Sbjct: 135 ERVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTPDAVGLTDLCHVENVQEKSQ 194
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR +P+QP+RFGRLLL R + + ++ +FF + V T +E L+ DM
Sbjct: 195 CALEEYVRNQYPSQPSRFGRLLLRLPSLRIVSAPVIEQLFFVRLVGKTPIETLIRDM 251
>gi|391328748|ref|XP_003738846.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
E member 1-like [Metaseiulus occidentalis]
Length = 524
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 108/194 (55%), Gaps = 15/194 (7%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWS--LPLLESSPLFNASEHVAA 58
M ++W K LP+F L DQV LLEE W +LFLL WS + L+ S P ++
Sbjct: 325 MVIRWVKCLPTFQTLSRGDQVCLLEEPWKDLFLLYMSHWSPGVDLISSLPAKSSRPSSPK 384
Query: 59 VPNGKASQTAA-------------DVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETR 105
P G + A ++ + V++R R + D E +CLKA+VLF+ ET
Sbjct: 385 SPTGSPERDAVSPAAVHHDELNPIEIHYVQDVMRRLRQLSPDDTECSCLKAIVLFRPETM 444
Query: 106 GLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKT 165
GL D+ VE LQDQAQ +L +VR +P QP RFGRLLL+ R+I + ++ +FF T
Sbjct: 445 GLCDTHPVEMLQDQAQCVLGDYVRERYPRQPTRFGRLLLLLPILRSISNVFIEKLFFKGT 504
Query: 166 VANTSMEKLLCDMY 179
+ N +EK+L +MY
Sbjct: 505 IGNIRVEKILGEMY 518
>gi|47214501|emb|CAG00925.1| unnamed protein product [Tetraodon nigroviridis]
Length = 383
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 108/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WAKN+P F L DQV LL SWSELF+LNA Q S+PL + L A H + +
Sbjct: 196 AVEWAKNIPFFPDLQLMDQVALLRMSWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 255
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +RV +++ + + VD AE++CLK++VLF S+ GL D VE++Q+++Q
Sbjct: 256 ERVVAFMDHIRVFQEQVEKLKALQVDTAEYSCLKSIVLFTSDAMGLSDVAHVESIQEKSQ 315
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR +P+QP RFGRLLL R + S ++ +FF + V T +E LL DM
Sbjct: 316 CALEEYVRNQYPSQPNRFGRLLLRLPSLRIVSSPVIEQLFFVRLVGKTPIETLLRDM 372
>gi|307170858|gb|EFN62969.1| Photoreceptor-specific nuclear receptor [Camponotus floridanus]
Length = 195
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 106/180 (58%), Gaps = 2/180 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAV+W + LP F + DQ++LLE SW++LFLL+ QWS+ + + L + + + +P
Sbjct: 12 MAVRWVRCLPPFQTISKDDQLLLLERSWTQLFLLHLAQWSISW-DITALLDDEQVRSRLP 70
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+ T ++ ++ ++ RFR + D E C+KAV LF ET GL +E LQDQA
Sbjct: 71 TDD-NLTNQELVLIQAIICRFRQLSPDFGECGCMKAVALFTPETVGLHAIQPIEILQDQA 129
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
Q +L + R+ +P QP R GRL+++ R + S V+ +FF +T+ + +LL DMY+
Sbjct: 130 QRILVDYTRSRYPQQPGRIGRLMILVGYLRCVSSKTVERLFFHETIGEIPISRLLVDMYQ 189
>gi|47086055|ref|NP_998404.1| nuclear receptor subfamily 2, group F, member 6b [Danio rerio]
gi|40807068|gb|AAH65332.1| Nuclear receptor subfamily 2, group F, member 6b [Danio rerio]
Length = 404
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/176 (40%), Positives = 103/176 (58%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
++WA+N+P F LP +QV LL SWSELF+LNA Q +LPL + L A H + +P
Sbjct: 214 IEWARNIPYFPDLPVSEQVALLRLSWSELFILNAAQSALPLHTAPLLAAAGFHSSPMPAD 273
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ VRV + + + VD E++CLKA+ LF + GL D VE+LQ++AQV
Sbjct: 274 RVVSFMDQVRVFQDQVDKLTRLQVDSVEYSCLKAIALFSPDACGLSDPAHVESLQEKAQV 333
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ R +P QP RFGRLLL R +P+ + +FF + V T +E L+ DM
Sbjct: 334 ALTEYERMQYPGQPQRFGRLLLRLPALRAVPANLISQLFFMRLVGKTPIETLIRDM 389
>gi|327283177|ref|XP_003226318.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 2-like
[Anolis carolinensis]
Length = 359
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 106/177 (59%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 168 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 227
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++Q
Sbjct: 228 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQ 287
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ + F + V T +E L+ DM
Sbjct: 288 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIAVSXFVRLVGKTPIETLIRDM 344
>gi|20589475|ref|NP_571261.1| nuclear receptor subfamily 2 group F member 5 [Danio rerio]
gi|6094378|sp|Q06726.1|NR2F5_DANRE RecName: Full=Nuclear receptor subfamily 2 group F member 5;
AltName: Full=Steroid receptor homolog SVP 46
gi|296421|emb|CAA49781.1| spv 46 [Danio rerio]
gi|190339654|gb|AAI62999.1| Nr2f5 protein [Danio rerio]
gi|190340229|gb|AAI62963.1| Nuclear receptor subfamily 2, group F, member 5 [Danio rerio]
Length = 403
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 107/177 (60%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WAKN+P F L DQV LL SWSELF+LNA Q S+PL + L A H + +
Sbjct: 198 AVEWAKNIPFFPDLQLMDQVALLRMSWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 257
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +RV +++ + + VD AE++CLK++VLF S+ GL D VE++Q+++Q
Sbjct: 258 ERVVAFMDHIRVFQEQVEKLKALQVDTAEYSCLKSIVLFTSDAMGLSDVAHVESIQEKSQ 317
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR +P QP RFGRLLL R + S ++ +FF + V T +E LL DM
Sbjct: 318 CALEEYVRNQYPNQPNRFGRLLLRLPSLRIVSSPVIEQLFFVRLVGKTPIETLLRDM 374
>gi|395736005|ref|XP_002815781.2| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1 [Pongo
abelii]
Length = 422
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 103/163 (63%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 230 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 289
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D+ +E+LQ+++Q
Sbjct: 290 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQ 349
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAK 164
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF +
Sbjct: 350 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVR 392
>gi|348501001|ref|XP_003438059.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Oreochromis niloticus]
Length = 410
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/176 (40%), Positives = 106/176 (60%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WA+N+P F LP DQV LL SWSELF+L+A Q +LPL + L A H + +
Sbjct: 215 VEWARNIPYFPELPVSDQVALLRLSWSELFILSAAQSALPLHMAPLLAAAGFHSSPMSAE 274
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ VRV + + + VD AE++CLKA+ LF + GL D + VE+LQ++AQV
Sbjct: 275 RVVSFMDQVRVFQDQVDKLTRLQVDSAEYSCLKAIALFSPDACGLTDPVHVESLQEKAQV 334
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ R +P+QP RFGRLLL R +P++ + +FF + + T +E L+ DM
Sbjct: 335 ALTEYERMQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLIGKTPIETLIRDM 390
>gi|52345586|ref|NP_001004841.1| nuclear receptor subfamily 2, group F, member 6 [Xenopus (Silurana)
tropicalis]
gi|49250456|gb|AAH74651.1| nuclear receptor subfamily 2, group F, member 6 [Xenopus (Silurana)
tropicalis]
Length = 389
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/176 (40%), Positives = 107/176 (60%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+W++N+P F L DQV LL SWSELF+L+A Q +LPL + L A H + +
Sbjct: 199 VEWSRNIPYFPELAMADQVSLLRLSWSELFVLSAAQSALPLHMAPLLAAAGFHASPMSAD 258
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ +R+ +++ + VD AE+ACLKA+ LF S+ GL D VE+LQ++AQV
Sbjct: 259 RVVSFMDQIRLFQDQVEKLNRLQVDSAEYACLKAIALFTSDACGLTDPAHVESLQEKAQV 318
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR +P+QP RFGRLLL R +P++ + +FF + V T +E L+ DM
Sbjct: 319 ALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDM 374
>gi|322787044|gb|EFZ13268.1| hypothetical protein SINV_11756 [Solenopsis invicta]
Length = 288
Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 105/180 (58%), Gaps = 2/180 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAV+W + LP F + DQ++LLE SW++LFLL+ QWS+ + + L + + +P
Sbjct: 105 MAVRWVRCLPPFQTISKDDQLLLLERSWTQLFLLHLAQWSISW-DITALLEDEQVRSRLP 163
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+ T ++ ++ ++ RFR + D E C+KAV LF ET GL +E LQDQA
Sbjct: 164 TDD-NPTNQELVLIQAIICRFRQLSPDFGECGCMKAVALFTPETVGLHAIQPIEILQDQA 222
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
Q +L + R+ +P QP R GRL+++ R + S V+ +FF +T+ + +LL DMY+
Sbjct: 223 QRILVDYTRSRYPQQPGRIGRLMILVGYLRCVSSKTVERLFFHETIGEIPISRLLVDMYQ 282
>gi|56090166|ref|NP_991120.1| nuclear receptor subfamily 2, group F, member 6 [Danio rerio]
gi|40807137|gb|AAH65330.1| Nuclear receptor subfamily 2, group F, member 6a [Danio rerio]
Length = 402
Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 72/176 (40%), Positives = 105/176 (59%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
++WA+N+P F LP +QV LL SWSELF+LNA Q +LPL + L A H + +
Sbjct: 212 IEWARNIPYFPELPVSEQVALLRLSWSELFILNAAQSALPLHMAPLLAAAGFHSSPMSAE 271
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ VRV +++ + VD AE++CLKA+ LF + GL D VE+LQ++AQV
Sbjct: 272 RVVSFMDQVRVFQDQVEKLTRLQVDSAEYSCLKAIALFSPDACGLTDPAHVESLQEKAQV 331
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ R +P QP RFGRLLL R +P++ + +FF + V T +E L+ DM
Sbjct: 332 ALTEYERMQYPGQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDM 387
>gi|432854604|ref|XP_004067983.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Oryzias latipes]
Length = 406
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 72/176 (40%), Positives = 105/176 (59%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
++WA+N+P F LP +QV LL SWSELF+LNA Q +LPL + L A H + +
Sbjct: 216 IEWARNIPYFPELPVSEQVALLRLSWSELFILNAAQSALPLHMAPLLAAAGFHSSPMSAE 275
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ VRV + + + VD AE++CLKA+ LF + GL D VE+LQ++AQV
Sbjct: 276 RVVSFMDQVRVFQDQVDKLNRLQVDSAEYSCLKAIALFSPDACGLTDPAHVESLQEKAQV 335
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ R +P+QP RFGRLLL R +P++ + +FF + V T +E L+ DM
Sbjct: 336 ALTEYERLQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDM 391
>gi|307203729|gb|EFN82689.1| Photoreceptor-specific nuclear receptor [Harpegnathos saltator]
Length = 547
Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 104/185 (56%), Gaps = 12/185 (6%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLP-----LLESSPLFNASEH 55
MAV+W + LP F + DQ++LLE SW++LFLL+ QWS+ LLE E
Sbjct: 364 MAVRWVRCLPPFQTISKDDQLLLLERSWTQLFLLHLAQWSISWDITALLED-------EQ 416
Query: 56 VAAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVEN 115
V + + T ++ ++ ++ RFR + D E C+KAV LF ET GL +E
Sbjct: 417 VRSRLPADDNPTNQELVLIQAIICRFRQLSPDFGECGCMKAVALFTPETVGLHAVQPIEI 476
Query: 116 LQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLL 175
LQDQAQ +L + R+ +P QP R GRL+++ R + S V+ +FF +T+ + +LL
Sbjct: 477 LQDQAQRILVDYTRSRYPQQPGRIGRLMILVGYLRCVSSKTVERLFFHETIGEIPISRLL 536
Query: 176 CDMYK 180
DMY+
Sbjct: 537 VDMYQ 541
>gi|332025033|gb|EGI65220.1| Photoreceptor-specific nuclear receptor [Acromyrmex echinatior]
Length = 443
Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 106/180 (58%), Gaps = 2/180 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAV+W + LP F + DQ++LLE SW++LFLL+ QWS+ + + L + + +P
Sbjct: 260 MAVRWVRCLPPFQTISKDDQLLLLERSWTQLFLLHLAQWSVSW-DITALLEDEQVRSRLP 318
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+ T ++ ++ ++ RFR + D E C+KAV LF ET GL +E LQDQA
Sbjct: 319 TDD-NPTNQELVLIQAIICRFRQLSPDFGECGCMKAVALFTPETVGLHAVQPIEILQDQA 377
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
Q +L + R+ +P QP+R GRL+++ R + S V+ +FF +T+ + +LL DMY+
Sbjct: 378 QRILVDYTRSRYPQQPSRIGRLMILVGYLRCVSSKTVERLFFHETIGEIPISRLLVDMYQ 437
>gi|410929439|ref|XP_003978107.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Takifugu rubripes]
Length = 406
Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/176 (40%), Positives = 104/176 (59%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
++WA+N+P F LP +QV LL SWSELF+LNA Q SLP+ + L A H + +
Sbjct: 216 IEWARNIPYFPELPVSEQVALLRLSWSELFILNAAQSSLPVHMAPLLAAAGFHSSPMSAE 275
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ VRV + + + VD AE++CLKA+ LF + GL D VE+LQ++AQV
Sbjct: 276 RVVSFMDQVRVFQDQVDKLNRLQVDTAEYSCLKAIALFSPDACGLTDPAHVESLQEKAQV 335
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ R +P+QP RFGRLLL R +P+ + +FF + V T +E L+ DM
Sbjct: 336 ALTEYERIQYPSQPQRFGRLLLRLPALRAVPANLISQLFFMRLVGKTPIETLIRDM 391
>gi|443685606|gb|ELT89160.1| hypothetical protein CAPTEDRAFT_171549 [Capitella teleta]
Length = 428
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 108/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+W +N+P F L DQV LL +WSELF+LNA Q ++PL + L A H + +
Sbjct: 237 AVEWGRNIPFFPDLQVADQVALLRLAWSELFVLNAAQCAMPLHVAPLLAAAGLHASPMAA 296
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL DS +E+LQ++AQ
Sbjct: 297 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFSSDACGLSDSAHIESLQEKAQ 356
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ R+ +P QP RFG+LLL R++ + ++ +FF + V T +E L+ DM
Sbjct: 357 CALEEYDRSQYPNQPTRFGKLLLRLPSLRSVSAQVIEQLFFVRLVGKTPIETLIRDM 413
>gi|348515163|ref|XP_003445109.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Oreochromis niloticus]
Length = 407
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/176 (40%), Positives = 104/176 (59%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
++WA+N+P F LP +QV LL SWSELF+LNA Q +LPL + L A H + +
Sbjct: 217 IEWARNIPYFPELPVSEQVALLRLSWSELFILNAAQSALPLHMAPLLAAAGFHSSPMSAE 276
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ VRV +++ + VD AE++CLKA+ LF + GL D VE+LQ++AQV
Sbjct: 277 RVVSFMDQVRVFQDQVEKLNRLQVDSAEYSCLKAIALFSPDACGLTDPAHVESLQEKAQV 336
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ R +P QP RFGRLLL R +P+ + +FF + V T +E L+ DM
Sbjct: 337 ALTEYERLQYPNQPQRFGRLLLRLPALRAVPANLISQLFFMRLVGKTPIETLIRDM 392
>gi|313233664|emb|CBY09835.1| unnamed protein product [Oikopleura dioica]
Length = 490
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 100/177 (56%), Gaps = 3/177 (1%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+ +P F L DQV +L+ W ELF+LNA Q +PL + L A H +A
Sbjct: 247 AVEWARQIPFFPELQITDQVNMLKHCWPELFVLNAAQSHMPLHVAPLLAAAGFHNSA--- 303
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
K VRV +++ + + +D AEF CLKA+VL + G+ D VE++Q++AQ
Sbjct: 304 DKVMNFMDQVRVFQEQVEKLKSLHIDSAEFTCLKAIVLLSPDAPGVSDPAHVESIQEKAQ 363
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ R +P QP+RFGRLLL R + ++ +FF + V T +E L+ DM
Sbjct: 364 CALEEYTRCQYPGQPSRFGRLLLRLPSVRTVSPHVIEQLFFVRLVGKTPIETLIRDM 420
>gi|20806167|ref|NP_620813.1| nuclear receptor subfamily 2 group F member 6 [Rattus norvegicus]
gi|10720384|sp|O09017.1|NR2F6_RAT RecName: Full=Nuclear receptor subfamily 2 group F member 6;
AltName: Full=COUPg; AltName: Full=Ovalbumin upstream
promoter gamma nuclear receptor; AltName:
Full=V-erbA-related protein 2; Short=EAR-2
gi|2197123|gb|AAB61296.1| ovalbumin upstream promoter gamma nuclear receptor rCOUPg [Rattus
norvegicus]
Length = 390
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 102/176 (57%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WA++ P F LP DQV LL SWSELF+LNA Q +PL + L A H +
Sbjct: 201 VEWARHAPFFPELPAADQVGLLRLSWSELFVLNAAQAPVPLHTAPLLAAAGLHAGPMAAE 260
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A VR + + + VD AE+ CLKA+ LF + GL D VE+LQ++AQV
Sbjct: 261 RAVAFMDQVRAFQEQVDKLGRLQVDAAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQV 320
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR +P+QP RFGRLLL R +P++ + +FF + V T +E L+ DM
Sbjct: 321 ALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDM 376
>gi|148233922|ref|NP_001080181.1| nuclear receptor subfamily 2, group F, member 6 [Xenopus laevis]
gi|33416678|gb|AAH56043.1| Nr2f6 protein [Xenopus laevis]
Length = 389
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 107/176 (60%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+W++++P F L DQV LL SWSELF+L+A Q +LPL + L A H + +
Sbjct: 199 VEWSRSIPYFPELAVADQVSLLRLSWSELFVLSAAQSALPLHMAPLLAAAGFHSSPMSAD 258
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ +R+ +++ + VD AE+ACLKA+ LF S+ GL D VE+LQ++AQV
Sbjct: 259 RVVSFMDQIRLFQDQVEKLNRLQVDSAEYACLKAIALFTSDACGLTDPAHVESLQEKAQV 318
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR +P+QP RFGRLLL R +P++ + +FF + V T +E L+ DM
Sbjct: 319 ALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDM 374
>gi|397491841|ref|XP_003816848.1| PREDICTED: COUP transcription factor 2 [Pan paniscus]
Length = 367
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 99/160 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 204 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 263
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++Q
Sbjct: 264 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQ 323
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIF 161
L ++VR+ +P QP RFG+LLL R + S+ ++ +F
Sbjct: 324 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLF 363
>gi|348500378|ref|XP_003437750.1| PREDICTED: COUP transcription factor 2-like [Oreochromis niloticus]
Length = 410
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 110/177 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+P+ + L A H + +
Sbjct: 219 AVEWARNIPFFPDLQVPDQVALLRLTWSELFVLNAAQCSMPVHAAPLLAAAGLHASPMSA 278
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +RV +++ +++ VD AE++C+KA+VLF ++ GL D VE LQ+++Q
Sbjct: 279 DRVVAFMDHIRVFQEQVEKLKVLHVDSAEYSCIKAIVLFTTDACGLSDVAHVEGLQEKSQ 338
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R++ S+ ++ +FF + V T +E L+ DM
Sbjct: 339 CALEEYVRSQYPNQPNRFGKLLLRLPSLRSVSSSVIEQLFFVRLVGKTPIETLIRDM 395
>gi|44969507|gb|AAS49607.1| nuclear receptor subfamily 2 group F member 1 [Scyliorhinus
canicula]
Length = 273
Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 97/154 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 118 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 177
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D+ +E+LQ+++Q
Sbjct: 178 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQ 237
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSA 155
L ++VR+ +P QP+RFG+LLL R + S+
Sbjct: 238 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSS 271
>gi|344282642|ref|XP_003413082.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Loxodonta
africana]
Length = 408
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/176 (43%), Positives = 104/176 (59%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WA++ P F LP DQV LL SWSELF+LNA Q +LPL + L A H A +
Sbjct: 218 VEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAE 277
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A VR + + + VD AE+ CLKA+ LF + GL D VE+LQ++AQV
Sbjct: 278 RAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQV 337
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR +PAQP RFGRLLL R +P++ + +FF + V T +E L+ DM
Sbjct: 338 ALTEYVRAQYPAQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDM 393
>gi|241651520|ref|XP_002411276.1| retinoid X receptor, putative [Ixodes scapularis]
gi|215503906|gb|EEC13400.1| retinoid X receptor, putative [Ixodes scapularis]
Length = 370
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 96/169 (56%), Gaps = 11/169 (6%)
Query: 21 VILLEESWSELFLLNAIQWSLP--LLESSPLFNASEHVA--------AVPNGKASQTAAD 70
V LLEESW +LFLL QWS+ L+ S P A A G Q A+
Sbjct: 197 VTLLEESWKDLFLLYMAQWSVAADLVSSLPGLKGGAGAALRLHPDALAALEGSPHQ-GAE 255
Query: 71 VRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRT 130
+ + V++R R + D E +CLKAVVLFK ET GL D VE LQDQAQ +L ++R
Sbjct: 256 LHYIQDVMRRLRQLSPDDTECSCLKAVVLFKPETIGLCDVHPVEMLQDQAQCVLGDYIRH 315
Query: 131 HHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
HP QP RFGRLLL+ R I +A V+ +FF T+ N +E++L DMY
Sbjct: 316 KHPRQPTRFGRLLLLLPSLRAISAATVERLFFKDTIGNIPIERILGDMY 364
>gi|44964649|gb|AAS49525.1| nuclear receptor subfamily 2 group F number 1 [Latimeria chalumnae]
Length = 274
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 96/154 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 119 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 178
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D +E+LQ+++Q
Sbjct: 179 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHIESLQEKSQ 238
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSA 155
L ++VR+ +P QP+RFG+LLL R + S+
Sbjct: 239 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSS 272
>gi|44964709|gb|AAS49526.1| nuclear receptor subfamily 2 group F number 1 [Protopterus dolloi]
Length = 273
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 97/154 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV+LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 118 AVEWARNIPFFPDLQITDQVVLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 177
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + +D AE++CLKA+VLF S GL D+ +E+LQ+++Q
Sbjct: 178 DRVVAFMDHIRIFQEQVEKLKALHLDSAEYSCLKAIVLFTSGACGLSDAAHIESLQEKSQ 237
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSA 155
L ++VR+ +P QP+RFG+LLL R + S+
Sbjct: 238 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSS 271
>gi|355707900|gb|AES03100.1| nuclear receptor subfamily 2, group F, member 6 [Mustela putorius
furo]
Length = 214
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 104/176 (59%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WA++ P F LP DQV LL SWSELF+LNA Q +LPL + L A H A +
Sbjct: 25 VEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAE 84
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A VR + + + VD AE+ CLKA+ LF + GL D VE+LQ++AQV
Sbjct: 85 RAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQV 144
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR +P+QP RFGRLLL R +P++ + +FF + V T +E L+ DM
Sbjct: 145 ALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDM 200
>gi|122892614|gb|ABM67369.1| NR2E3 [Hylobates klossii]
Length = 140
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/102 (62%), Positives = 75/102 (73%), Gaps = 2/102 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAA-V 59
MAVKWAKNLP F+ LPFRDQVILLEE+WSELFLL AIQWSLP L+S PL E AA
Sbjct: 39 MAVKWAKNLPVFSGLPFRDQVILLEEAWSELFLLGAIQWSLP-LDSCPLLAPPEASAAGG 97
Query: 60 PNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK 101
G+ + + + RVL + RFR + VDP EFAC+KA+VLFK
Sbjct: 98 AQGRLTLASMETRVLRETISRFRALAVDPTEFACMKALVLFK 139
>gi|297276426|ref|XP_001114305.2| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
isoform 1 [Macaca mulatta]
Length = 404
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 104/176 (59%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WA++ P F LP DQV LL SWSELF+LNA Q +LPL + L A H A +
Sbjct: 214 VEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAE 273
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A VR + + + VD AE+ CLKA+ LF + GL D VE+LQ++AQV
Sbjct: 274 RAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTQDACGLSDPAHVESLQEKAQV 333
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR +P+QP RFGRLLL R +P++ + +FF + V T +E L+ DM
Sbjct: 334 ALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDM 389
>gi|114675979|ref|XP_001173294.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Pan
troglodytes]
gi|410209646|gb|JAA02042.1| nuclear receptor subfamily 2, group F, member 6 [Pan troglodytes]
gi|410259260|gb|JAA17596.1| nuclear receptor subfamily 2, group F, member 6 [Pan troglodytes]
gi|410296550|gb|JAA26875.1| nuclear receptor subfamily 2, group F, member 6 [Pan troglodytes]
gi|410337621|gb|JAA37757.1| nuclear receptor subfamily 2, group F, member 6 [Pan troglodytes]
Length = 404
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 104/176 (59%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WA++ P F LP DQV LL SWSELF+LNA Q +LPL + L A H A +
Sbjct: 214 VEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAE 273
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A VR + + + VD AE+ CLKA+ LF + GL D VE+LQ++AQV
Sbjct: 274 RAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQV 333
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR +P+QP RFGRLLL R +P++ + +FF + V T +E L+ DM
Sbjct: 334 ALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDM 389
>gi|302563813|ref|NP_001181753.1| nuclear receptor subfamily 2 group F member 6 [Macaca mulatta]
Length = 377
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 104/176 (59%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WA++ P F LP DQV LL SWSELF+LNA Q +LPL + L A H A +
Sbjct: 187 VEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAE 246
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A VR + + + VD AE+ CLKA+ LF + GL D VE+LQ++AQV
Sbjct: 247 RAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTQDACGLSDPAHVESLQEKAQV 306
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR +P+QP RFGRLLL R +P++ + +FF + V T +E L+ DM
Sbjct: 307 ALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDM 362
>gi|387541468|gb|AFJ71361.1| nuclear receptor subfamily 2 group F member 6 [Macaca mulatta]
Length = 404
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 104/176 (59%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WA++ P F LP DQV LL SWSELF+LNA Q +LPL + L A H A +
Sbjct: 214 VEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAE 273
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A VR + + + VD AE+ CLKA+ LF + GL D VE+LQ++AQV
Sbjct: 274 RAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQV 333
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR +P+QP RFGRLLL R +P++ + +FF + V T +E L+ DM
Sbjct: 334 ALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDM 389
>gi|194384988|dbj|BAG60906.1| unnamed protein product [Homo sapiens]
Length = 377
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 104/176 (59%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WA++ P F LP DQV LL SWSELF+LNA Q +LPL + L A H A +
Sbjct: 187 VEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAE 246
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A VR + + + VD AE+ CLKA+ LF + GL D VE+LQ++AQV
Sbjct: 247 RAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQV 306
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR +P+QP RFGRLLL R +P++ + +FF + V T +E L+ DM
Sbjct: 307 ALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDM 362
>gi|311249241|ref|XP_003123537.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Sus
scrofa]
Length = 414
Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 104/176 (59%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WA++ P F LP DQV LL SWSELF+LNA Q +LPL + L A H A +
Sbjct: 224 VEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAE 283
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A VR + + + VD AE+ CLKA+ LF + GL D VE+LQ++AQV
Sbjct: 284 RAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQV 343
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR +P+QP RFGRLLL R +P++ + +FF + V T +E L+ DM
Sbjct: 344 ALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDM 399
>gi|20070199|ref|NP_005225.2| nuclear receptor subfamily 2 group F member 6 [Homo sapiens]
gi|23503053|sp|P10588.2|NR2F6_HUMAN RecName: Full=Nuclear receptor subfamily 2 group F member 6;
AltName: Full=V-erbA-related protein 2; Short=EAR-2
gi|119604986|gb|EAW84580.1| nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
gi|127798390|gb|AAH02669.3| Nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
gi|127799092|gb|AAH63018.2| Nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
gi|127799948|gb|AAH84544.2| Nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
gi|189054615|dbj|BAG37465.1| unnamed protein product [Homo sapiens]
gi|208966888|dbj|BAG73458.1| nuclear receptor subfamily 2, group F, member 6 [synthetic
construct]
gi|325495513|gb|ADZ17362.1| nuclear receptor V-erbA-related [Homo sapiens]
Length = 404
Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 104/176 (59%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WA++ P F LP DQV LL SWSELF+LNA Q +LPL + L A H A +
Sbjct: 214 VEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAE 273
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A VR + + + VD AE+ CLKA+ LF + GL D VE+LQ++AQV
Sbjct: 274 RAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQV 333
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR +P+QP RFGRLLL R +P++ + +FF + V T +E L+ DM
Sbjct: 334 ALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDM 389
>gi|296486096|tpg|DAA28209.1| TPA: nuclear receptor subfamily 2, group F, member 6-like [Bos
taurus]
Length = 383
Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 104/176 (59%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WA++ P F LP DQV LL SWSELF+LNA Q +LPL + L A H A +
Sbjct: 193 VEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAE 252
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A VR + + + VD AE+ CLKA+ LF + GL D VE+LQ++AQV
Sbjct: 253 RAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQV 312
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR +P+QP RFGRLLL R +P++ + +FF + V T +E L+ DM
Sbjct: 313 ALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDM 368
>gi|296233223|ref|XP_002761927.1| PREDICTED: nuclear receptor subfamily 2 group F member 6
[Callithrix jacchus]
Length = 386
Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 104/176 (59%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WA++ P F LP DQV LL SWSELF+LNA Q +LPL + L A H A +
Sbjct: 196 VEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAE 255
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A VR + + + VD AE+ CLKA+ LF + GL D VE+LQ++AQV
Sbjct: 256 RAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQV 315
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR +P+QP RFGRLLL R +P++ + +FF + V T +E L+ DM
Sbjct: 316 ALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDM 371
>gi|358412829|ref|XP_002704762.2| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Bos
taurus]
gi|359066798|ref|XP_002688591.2| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Bos
taurus]
Length = 412
Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 104/176 (59%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WA++ P F LP DQV LL SWSELF+LNA Q +LPL + L A H A +
Sbjct: 222 VEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAE 281
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A VR + + + VD AE+ CLKA+ LF + GL D VE+LQ++AQV
Sbjct: 282 RAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQV 341
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR +P+QP RFGRLLL R +P++ + +FF + V T +E L+ DM
Sbjct: 342 ALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDM 397
>gi|73986038|ref|XP_852412.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 isoform 1
[Canis lupus familiaris]
Length = 416
Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 104/176 (59%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WA++ P F LP DQV LL SWSELF+LNA Q +LPL + L A H A +
Sbjct: 226 VEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAE 285
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A VR + + + VD AE+ CLKA+ LF + GL D VE+LQ++AQV
Sbjct: 286 RAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQV 345
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR +P+QP RFGRLLL R +P++ + +FF + V T +E L+ DM
Sbjct: 346 ALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDM 401
>gi|395847866|ref|XP_003796585.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Otolemur
garnettii]
Length = 410
Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 104/176 (59%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WA++ P F LP DQV LL SWSELF+LNA Q +LPL + L A H A +
Sbjct: 220 VEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAE 279
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A VR + + + VD AE+ CLKA+ LF + GL D VE+LQ++AQV
Sbjct: 280 RAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQV 339
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR +P+QP RFGRLLL R +P++ + +FF + V T +E L+ DM
Sbjct: 340 ALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDM 395
>gi|332253632|ref|XP_003275940.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Nomascus
leucogenys]
Length = 366
Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 104/176 (59%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WA++ P F LP DQV LL SWSELF+LNA Q +LPL + L A H A +
Sbjct: 176 VEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAE 235
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A VR + + + VD AE+ CLKA+ LF + GL D VE+LQ++AQV
Sbjct: 236 RAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQV 295
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR +P+QP RFGRLLL R +P++ + +FF + V T +E L+ DM
Sbjct: 296 ALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDM 351
>gi|156387699|ref|XP_001634340.1| predicted protein [Nematostella vectensis]
gi|156221422|gb|EDO42277.1| predicted protein [Nematostella vectensis]
Length = 391
Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 105/185 (56%), Gaps = 8/185 (4%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WAKN+P ++ LP DQ +LL WSELF LNA Q P S L + S A
Sbjct: 174 AVEWAKNIPFYSDLPLPDQAVLLRSCWSELFTLNAAQHCSPFHISPTLTSNSSGFAGNGG 233
Query: 62 GKASQTAA--------DVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQV 113
G + ++++ +++ + + +D AEFACLKA+VLF +++GL + QV
Sbjct: 234 GYLNTRVMSAFDCQNNNMKLFEEQVEKLKNMHIDSAEFACLKAIVLFNPDSQGLSEPAQV 293
Query: 114 ENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEK 173
ENLQD+ Q L ++RT +P Q RFG+LLL R + V+++FF++ +++
Sbjct: 294 ENLQDRTQSALEDYIRTQYPNQTTRFGKLLLRLPALRLLRPVSVENLFFSRLSMGNTVDS 353
Query: 174 LLCDM 178
LL DM
Sbjct: 354 LLNDM 358
>gi|431921971|gb|ELK19144.1| Nuclear receptor subfamily 2 group F member 6 [Pteropus alecto]
Length = 481
Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 104/176 (59%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WA++ P F LP DQV LL SWSELF+LNA Q +LPL + L A H A +
Sbjct: 291 VEWARHAPFFPDLPVADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAE 350
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A VR + + + VD AE+ CLKA+ LF + GL D VE+LQ++AQV
Sbjct: 351 RAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQV 410
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR +P+QP RFGRLLL R +P++ + +FF + V T +E L+ DM
Sbjct: 411 ALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDM 466
>gi|402904691|ref|XP_003915174.1| PREDICTED: Usher syndrome type-1C protein-binding protein 1 [Papio
anubis]
Length = 952
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 104/176 (59%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WA++ P F LP DQV LL SWSELF+LNA Q +LPL + L A H A +
Sbjct: 762 VEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAE 821
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A VR + + + VD AE+ CLKA+ LF + GL D VE+LQ++AQV
Sbjct: 822 RAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQV 881
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR +P+QP RFGRLLL R +P++ + +FF + V T +E L+ DM
Sbjct: 882 ALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDM 937
>gi|148694042|gb|EDL25989.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_b [Mus
musculus]
Length = 303
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 63/104 (60%), Positives = 75/104 (72%), Gaps = 2/104 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAVKWAKNLP F+ LPFRDQVILLEE+W+ELFLL AIQWSLP L+S PL A +
Sbjct: 144 MAVKWAKNLPVFSNLPFRDQVILLEEAWNELFLLGAIQWSLP-LDSCPLL-APPEASGSS 201
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSET 104
G+ + +A+ R L + RFR + VDP EFACLKA+VLFK T
Sbjct: 202 QGRLALASAETRFLQETISRFRALAVDPTEFACLKALVLFKPGT 245
>gi|156119469|ref|NP_001095229.1| nuclear receptor subfamily 2, group F, member 5 [Xenopus laevis]
gi|64643|emb|CAA44806.1| Coup transcription factor [Xenopus laevis]
Length = 397
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 104/177 (58%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
A++WAKN+P F DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 206 AIEWAKNIPFFPDFQLSDQVSLLRMTWSELFVLNAAQCSMPLHVAPLLARAGLHASPMSA 265
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+ LF + GL D VE++Q+++Q
Sbjct: 266 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIALFTPDAVGLSDIGHVESIQEKSQ 325
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR +P QP RFGRLLL R + + ++ +FF + V T +E L+ DM
Sbjct: 326 CALEEYVRNQYPNQPTRFGRLLLRLPSLRIVSAPVIEQLFFVRLVGKTPIETLIRDM 382
>gi|301618212|ref|XP_002938509.1| PREDICTED: nuclear receptor subfamily 2 group F member 5-like
[Xenopus (Silurana) tropicalis]
Length = 398
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 104/177 (58%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
A++WAKN+P F DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 207 AIEWAKNIPFFPDFQLSDQVSLLRMTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 266
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +RV +++ + + VD AE++CLKA+ LF + GL D VE++Q+++Q
Sbjct: 267 DRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIALFTPDAVGLSDIGHVESIQEKSQ 326
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR +P QP RFGRLLL R + + ++ +FF + V T +E L+ DM
Sbjct: 327 CALEEYVRNQYPNQPTRFGRLLLRLPSLRIVSAPVIEQLFFVRLVGKTPIETLIRDM 383
>gi|348556980|ref|XP_003464298.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Cavia porcellus]
Length = 396
Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 76/176 (43%), Positives = 104/176 (59%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WA++ P F LP DQV LL SWSELF+LNA Q +LPL +S L A H A +
Sbjct: 206 VEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTASLLAAAGLHAAPMAAE 265
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A VR + + + VD AE+ CLKA+ LF + GL D VE+LQ++AQV
Sbjct: 266 RAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQV 325
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR +P QP RFGRLLL R +P++ + +FF + V T +E L+ DM
Sbjct: 326 ALTEYVRAQYPTQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDM 381
>gi|112807199|ref|NP_034280.2| nuclear receptor subfamily 2 group F member 6 [Mus musculus]
gi|341941192|sp|P43136.2|NR2F6_MOUSE RecName: Full=Nuclear receptor subfamily 2 group F member 6;
AltName: Full=COUP transcription factor 3;
Short=COUP-TF3; AltName: Full=V-erbA-related protein 2;
Short=EAR-2
gi|14198162|gb|AAH08138.1| Nuclear receptor subfamily 2, group F, member 6 [Mus musculus]
gi|74143003|dbj|BAE42523.1| unnamed protein product [Mus musculus]
gi|74203464|dbj|BAE20887.1| unnamed protein product [Mus musculus]
gi|148696964|gb|EDL28911.1| nuclear receptor subfamily 2, group F, member 6, isoform CRA_b [Mus
musculus]
Length = 390
Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 104/176 (59%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WA++ P F LP DQV LL SWSELF+LNA Q +LPL + L A H A +
Sbjct: 201 VEWARHAPFFPELPAADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAE 260
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A VR + + + VD AE+ CLKA+ LF + GL D VE+LQ++AQV
Sbjct: 261 RAVAFMDQVRAFQEQVDKLGRLQVDAAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQV 320
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR +P+QP RFGRLLL R +P++ + +FF + V T +E L+ DM
Sbjct: 321 ALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDM 376
>gi|328787581|ref|XP_624042.2| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Apis
mellifera]
Length = 394
Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 105/182 (57%), Gaps = 21/182 (11%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
AV+WA+++ SF LP+RDQ ILLEESWSELF+L A QW+ P+ E A VP
Sbjct: 223 FAVRWARSIHSFLQLPYRDQTILLEESWSELFVLTAAQWNFPV----------EEAALVP 272
Query: 61 NGKASQTAA----DVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
N +S+ + R L +L + L+ VD +E+ACLKA+VLFK E+RGL + ++ L
Sbjct: 273 NDLSSERKETLVDEARKLRELLAKCALLRVDHSEYACLKAIVLFKGESRGLCEPGRITAL 332
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
Q+Q + + R GRLLL+ R + + +Q + F TV + S+E+LL
Sbjct: 333 QEQTVAVFCER-------DARRVGRLLLLLPSARALCRSTLQELLFKPTVGDVSVERLLG 385
Query: 177 DM 178
DM
Sbjct: 386 DM 387
>gi|482930|emb|CAA54097.1| EAR2 [Mus musculus]
Length = 390
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 104/176 (59%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WA++ P F LP DQV LL SWSELF+LNA Q +LPL + L A H A +
Sbjct: 201 VEWARHAPFFPELPAADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAE 260
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A VR + + + VD AE+ CLKA+ LF + GL D VE+LQ++AQV
Sbjct: 261 RAVAFMDQVRAFQEQVDKLGRLQVDAAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQV 320
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR +P+QP RFGRLLL R +P++ + +FF + V T +E L+ DM
Sbjct: 321 ALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISKLFFMRLVGKTPIETLIRDM 376
>gi|295656541|gb|ADG26733.1| COUP transcription factor 1 [Platynereis dumerilii]
Length = 302
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 102/163 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+W++N+P F L DQV LL SWSELF+LNA Q S+PL + L A H + +
Sbjct: 139 AVEWSRNIPFFPDLQVTDQVALLRLSWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMAA 198
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKAVVLF S+ GL D+ +E+LQ+++Q
Sbjct: 199 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAVVLFSSDACGLSDTAHIESLQEKSQ 258
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAK 164
L ++VR+ +P QP RFG+LLL R++ + ++ +FF +
Sbjct: 259 CALEEYVRSQYPNQPTRFGKLLLRLPSLRSVSAQVIEQLFFVR 301
>gi|324512063|gb|ADY45006.1| Steroid receptor seven-up, isoform B/C [Ascaris suum]
Length = 417
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 108/179 (60%), Gaps = 3/179 (1%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNAS--EHVAAV 59
AV+WAKN+P F L DQ+ LL SW+ELF++NA Q+ +P+ ++PL AS + +
Sbjct: 220 AVEWAKNIPFFGELIESDQLTLLRASWAELFVVNAAQFGMPV-HAAPLLAASVLHSTSPL 278
Query: 60 PNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
P + +RV G ++R + + +D AEF+ LKAV+LF ++ GL D ++VE++Q++
Sbjct: 279 PPDRLVLFMDRIRVFQGQVERLKSLHMDSAEFSSLKAVILFSADCCGLSDVMRVESIQEK 338
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
Q L ++ RT Q RFGRLLL R I S ++ +FF K V T +E LL DM
Sbjct: 339 VQSALEEYCRTQRQQQIGRFGRLLLRLPSLRTISSTMIEQLFFVKLVGETPIEFLLRDM 397
>gi|403256261|ref|XP_003920807.1| PREDICTED: COUP transcription factor 1 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 279
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 109/183 (59%), Gaps = 6/183 (3%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 80 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 139
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLF------KSETRGLKDSLQVEN 115
+ +R+ +++ + + VD AE++CL ++ L +++ GL D+ +E+
Sbjct: 140 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLSSLSLSLPPMAARADACGLSDAAHIES 199
Query: 116 LQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLL 175
LQ+++Q L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E L+
Sbjct: 200 LQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLI 259
Query: 176 CDM 178
DM
Sbjct: 260 RDM 262
>gi|380027402|ref|XP_003697414.1| PREDICTED: COUP transcription factor 2-like [Apis florea]
Length = 393
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/182 (39%), Positives = 104/182 (57%), Gaps = 21/182 (11%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
AV+WA+++ SF LP+RDQ ILLEESWSELF+L A QW+ P+ E VP
Sbjct: 222 FAVRWARSIHSFLQLPYRDQTILLEESWSELFVLTAAQWNFPV----------EEATLVP 271
Query: 61 NGKASQTAA----DVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
N +S+ + R L +L + L+ VD +E+ACLKA+VLFK E+RGL + ++ L
Sbjct: 272 NDLSSERKETLVDEARKLRELLGKCALLRVDHSEYACLKAIVLFKGESRGLCEPGRITAL 331
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
Q+Q + + R GRLLL+ R + + +Q + F TV + S+E+LL
Sbjct: 332 QEQTVAVFCER-------DARRVGRLLLLLPSARALCRSTLQELLFKPTVGDVSVERLLG 384
Query: 177 DM 178
DM
Sbjct: 385 DM 386
>gi|47216397|emb|CAG01948.1| unnamed protein product [Tetraodon nigroviridis]
Length = 426
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 107/200 (53%), Gaps = 24/200 (12%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WA+N+P F LP DQV LL SWSELF+LNA Q +LPL + L A H + +
Sbjct: 214 VEWARNIPYFPELPVSDQVALLRLSWSELFILNAAQSALPLHMAPLLAAAGFHSSPMSAE 273
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK--------------------- 101
+ VRV + + + VD AE++CLKA+ LF
Sbjct: 274 RVVSFMDQVRVFQDQVDKLTRLQVDSAEYSCLKAIALFSPAHHDSLRKLPTLAQLNNGAT 333
Query: 102 ---SETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQ 158
S+ GL D + VE+LQ++AQV L ++ R +P+QP RFGRLLL R +P++ +
Sbjct: 334 LPPSDACGLTDPVHVESLQEKAQVALTEYERMQYPSQPQRFGRLLLRLPALRAVPASLIS 393
Query: 159 HIFFAKTVANTSMEKLLCDM 178
+FF + V T +E L+ DM
Sbjct: 394 QLFFMRLVGKTPIETLIRDM 413
>gi|301615499|ref|XP_002937209.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
E member 1-like [Xenopus (Silurana) tropicalis]
Length = 405
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 104/170 (61%), Gaps = 8/170 (4%)
Query: 20 QVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNGKASQTAADVRVLNGVLQ 79
Q++LLE++W ELF+L QW++P+ S+ L + + + K ++ ++++ L V+
Sbjct: 233 QLMLLEDAWRELFVLGIAQWAIPVDASTLLAVSGMNSDNTESQKLNKIISEIQALQEVVS 292
Query: 80 RFRLVGVDPAEFACLKAVVLFK--------SETRGLKDSLQVENLQDQAQVMLAQHVRTH 131
RFR + +D EFACLK +V FK SE R +++ + LQD+AQ+ L ++ T
Sbjct: 293 RFRQLRLDATEFACLKCIVTFKAGVPPHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTR 352
Query: 132 HPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYKN 181
+P QP RFG+LLL+ R+I + ++ +FF KT+ N + +LL DMYK+
Sbjct: 353 YPTQPCRFGKLLLLLPALRSINPSTIEEVFFKKTIGNVPITRLLSDMYKS 402
>gi|449281976|gb|EMC88912.1| COUP transcription factor 2 [Columba livia]
Length = 281
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 100/177 (56%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 90 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 149
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + V +E C + F S GL D VE+LQ+++Q
Sbjct: 150 DRVVAFMDHIRIFQEQVEKLKALHVAVSEKKCPDPIREFSSYACGLSDVAHVESLQEKSQ 209
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 210 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 266
>gi|357622948|gb|EHJ74290.1| putative Orphan nuclear receptor NR6A1 [Danaus plexippus]
Length = 307
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/180 (38%), Positives = 102/180 (56%), Gaps = 3/180 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAV+W + L F AL DQ +LL +W +LF+L+ QWS P + L +
Sbjct: 112 MAVRWVRCLAPFQALAASDQAVLLRAAWKDLFVLHLAQWSAPWDLAPLLAAPAARARLPS 171
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+ ++ L +L RFR + D +E C+KA+VLF +T GL ++ VE LQDQA
Sbjct: 172 DPLVD---LEINTLQEILCRFRQIAPDGSECGCMKAIVLFSPDTPGLSETQPVEMLQDQA 228
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
Q +LA +VRT + QP RFGRLLL+ R + + ++ + F +TV + S+ LL DMY+
Sbjct: 229 QCILADYVRTRYTRQPTRFGRLLLLLPSLRAVRARSIESLLFRETVGDVSVATLLHDMYR 288
>gi|74187239|dbj|BAE22615.1| unnamed protein product [Mus musculus]
Length = 173
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 103/168 (61%), Gaps = 7/168 (4%)
Query: 21 VILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNGKASQTAADVRVLNGVLQR 80
++LLE++W ELF+L QW++P+ ++ L + + + K ++ ++++ L V+ R
Sbjct: 3 LMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNTDNTDSQKLNKIISEIQALQEVVAR 62
Query: 81 FRLVGVDPAEFACLKAVVLFK-------SETRGLKDSLQVENLQDQAQVMLAQHVRTHHP 133
FR + +D EFACLK +V FK SE R +++ + LQD+AQ+ L ++ T +P
Sbjct: 63 FRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYP 122
Query: 134 AQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYKN 181
QP RFG+LLL+ R+I + ++ +FF KT+ N + +LL DMYK+
Sbjct: 123 TQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRLLSDMYKS 170
>gi|260834489|ref|XP_002612243.1| hypothetical protein BRAFLDRAFT_155937 [Branchiostoma floridae]
gi|229297618|gb|EEN68252.1| hypothetical protein BRAFLDRAFT_155937 [Branchiostoma floridae]
Length = 375
Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 104/194 (53%), Gaps = 13/194 (6%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M + W +++P+F L DQ +LL+ SW E+FLL QW+LP+ A P
Sbjct: 182 MTLHWLRSIPAFLTLSSHDQHLLLQSSWQEMFLLGLAQWALPMDPKQLAVEAGVPPDQSP 241
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKS------------ETRGLK 108
+ V++L L +F + VD E+ACLK +VLFK+ + + L+
Sbjct: 242 ADRLQTFLQQVQMLQETLHKFHQLQVDAVEYACLKGIVLFKTGETISQTTCCFTDVQSLR 301
Query: 109 DSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTV-A 167
D V LQDQ Q+ + H+ H P QP RFG+LLL+ S R + + ++ +FF KT+
Sbjct: 302 DPGTVAVLQDQTQLSFSHHIEMHKPGQPFRFGKLLLLLSSLREVQRSSLESVFFTKTMTG 361
Query: 168 NTSMEKLLCDMYKN 181
SM++L+ DMYK+
Sbjct: 362 GVSMDQLVLDMYKS 375
>gi|28630300|gb|AAN73342.1| nuclear receptor subfamily 2 group F [Petromyzon marinus]
Length = 283
Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 91/143 (63%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL WSELF+LNA Q ++PL + L A H + +
Sbjct: 138 AVEWARNIPFFPDLQITDQVALLRLVWSELFVLNAAQCAMPLHVAPLLAAAGLHASPMSA 197
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++C+KA+VLF ++ GL D+ +E+LQ+++Q
Sbjct: 198 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCIKAIVLFTTDACGLSDAAHIESLQEKSQ 257
Query: 122 VMLAQHVRTHHPAQPARFGRLLL 144
L ++VR+ +P QP RFG+LLL
Sbjct: 258 CALEEYVRSQYPNQPTRFGKLLL 280
>gi|312065719|ref|XP_003135926.1| hypothetical protein LOAG_00338 [Loa loa]
gi|307768898|gb|EFO28132.1| hypothetical protein LOAG_00338 [Loa loa]
Length = 212
Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 107/179 (59%), Gaps = 3/179 (1%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAA--V 59
AV+WAKN+P F L DQ+ LL SW+ELF++NA Q+ +P+ +PL AS ++ +
Sbjct: 15 AVEWAKNIPFFNELSDTDQLTLLRASWAELFVVNAAQFGMPV-HVAPLLAASGLHSSPPL 73
Query: 60 PNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
P + +RV G ++R + + +D AEF LKAV+LF + GL D ++VE +Q++
Sbjct: 74 PTDQLVVFMDRIRVFQGQIERLKALQMDSAEFCSLKAVILFSVDCCGLNDVIRVETIQEK 133
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
Q L ++ RT Q RFGRLLL R+I ++ ++ +FF K V T +E LL DM
Sbjct: 134 VQSALEEYCRTQKQLQVGRFGRLLLRLPSLRSISASVIEQLFFVKLVGETPIEFLLRDM 192
>gi|344242733|gb|EGV98836.1| Nuclear receptor subfamily 2 group E member 1 [Cricetulus griseus]
Length = 323
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 104/169 (61%), Gaps = 7/169 (4%)
Query: 20 QVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNGKASQTAADVRVLNGVLQ 79
+++LLE++W ELF+L QW++P+ ++ L + + + K ++ ++++ L V+
Sbjct: 152 KLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNSDNTDSQKLNKIISEIQALQEVVA 211
Query: 80 RFRLVGVDPAEFACLKAVVLFK-------SETRGLKDSLQVENLQDQAQVMLAQHVRTHH 132
RFR + +D EFACLK +V FK SE R +++ + LQD+AQ+ L ++ T +
Sbjct: 212 RFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRY 271
Query: 133 PAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYKN 181
P QP RFG+LLL+ R+I + ++ +FF KT+ N + +LL DMYK+
Sbjct: 272 PTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRLLSDMYKS 320
>gi|350424111|ref|XP_003493692.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Bombus impatiens]
Length = 392
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 105/186 (56%), Gaps = 29/186 (15%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
AV+WA+++ SF LP+RDQ ILLEESWSELF+L A QW+ P+ ES+ VP
Sbjct: 221 FAVRWARSIHSFLQLPYRDQTILLEESWSELFVLTAAQWNFPVEEST----------LVP 270
Query: 61 NGKASQTAA----DVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
N +S+ +VR L +L + L+ VD +E+ACLKA+VLFK E+RGL + ++ L
Sbjct: 271 NDLSSERKETLVDEVRKLRELLAKCALLRVDHSEYACLKAIVLFKGESRGLCEPGRITAL 330
Query: 117 QDQAQVMLAQHVRTHHPAQPARFG----RLLLMTSQCRNIPSARVQHIFFAKTVANTSME 172
Q+Q + + R G L + CR+I +Q + F TV + S+E
Sbjct: 331 QEQTVAVFCER-------DARRVGRLLLLLPPARALCRSI----LQELLFKPTVGDVSVE 379
Query: 173 KLLCDM 178
+LL DM
Sbjct: 380 RLLGDM 385
>gi|340722756|ref|XP_003399768.1| PREDICTED: COUP transcription factor 1-like [Bombus terrestris]
Length = 392
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 105/186 (56%), Gaps = 29/186 (15%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
AV+WA+++ SF LP+RDQ ILLEESWSELF+L A QW+ P+ ES+ VP
Sbjct: 221 FAVRWARSIHSFLQLPYRDQTILLEESWSELFVLTAAQWNFPVDEST----------LVP 270
Query: 61 NGKASQTAA----DVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
N +S+ +VR L +L + L+ VD +E+ACLKA+VLFK E+RGL + ++ L
Sbjct: 271 NDLSSERKETLVDEVRKLRELLAKCALLRVDHSEYACLKAIVLFKGESRGLCEPGRITAL 330
Query: 117 QDQAQVMLAQHVRTHHPAQPARFG----RLLLMTSQCRNIPSARVQHIFFAKTVANTSME 172
Q+Q + + R G L + CR+I +Q + F TV + S+E
Sbjct: 331 QEQTVAVFCER-------DARRVGRLLLLLPPARALCRSI----LQELLFKPTVGDVSVE 379
Query: 173 KLLCDM 178
+LL DM
Sbjct: 380 RLLGDM 385
>gi|409758|gb|AAA37532.1| transcription factor [Mus musculus]
Length = 389
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/176 (40%), Positives = 103/176 (58%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WA++ P F LP DQV LL SWSELF+LNA Q ++ + + L A H A +
Sbjct: 200 VEWARHAPFFPELPAADQVALLRLSWSELFVLNAAQAAVAVHTAPLLAAAGLHAAPMAAE 259
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A VR + + + VD AE+ CLKA+ LF + GL D VE+LQ++AQV
Sbjct: 260 RAVAFMDQVRAFQEQVDKLGRLQVDAAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQV 319
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR +P+QP RFGRLLL R +P++ + +FF + V T +E L+ DM
Sbjct: 320 ALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDM 375
>gi|397494017|ref|XP_003817891.1| PREDICTED: nuclear receptor subfamily 2 group F member 6, partial
[Pan paniscus]
Length = 429
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/176 (40%), Positives = 101/176 (57%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WA++ P F LP DQV LL SWSELF+LNA Q +LPL + L A H A +
Sbjct: 239 VEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAE 298
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + + + VD AE+ CLKA+ LF + GL D VE+LQ++AQV
Sbjct: 299 RXXXXXXXXXXXXEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQV 358
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR +P+QP RFGRLLL R +P++ + +FF + V T +E L+ DM
Sbjct: 359 ALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDM 414
>gi|170587670|ref|XP_001898597.1| Steroid receptor seven-up type 2 [Brugia malayi]
gi|158593867|gb|EDP32461.1| Steroid receptor seven-up type 2, putative [Brugia malayi]
Length = 530
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 106/182 (58%), Gaps = 3/182 (1%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNAS--EHVAAV 59
AV+WAKN+P F L DQ+ LL SW+ELF++NA Q+ +P+ +PL AS +
Sbjct: 333 AVEWAKNIPFFNELSDTDQLTLLRASWAELFVINAAQFGMPV-HVAPLLAASGLHSSPPL 391
Query: 60 PNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
P + +RV G ++R + + +D AEF LKAV+LF + GL D ++VE +Q++
Sbjct: 392 PTDQLVVFMDRIRVFQGQIERLKALQMDLAEFCSLKAVILFSVDCCGLNDVIRVETIQEK 451
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
Q L ++ RT Q RFGRLLL R+I ++ ++ +FF K V T +E LL DM
Sbjct: 452 VQSALEEYCRTQKQLQVGRFGRLLLRLPSLRSISASVIEQLFFVKLVGETPIEFLLRDML 511
Query: 180 KN 181
+
Sbjct: 512 RT 513
>gi|31065|emb|CAA31282.1| unnamed protein product [Homo sapiens]
Length = 403
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 103/176 (58%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WA++ F LP DQV LL SWSELF+LNA Q +LPL + L A H A +
Sbjct: 214 VEWARH-GFFPELPVADQVALLRMSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAE 272
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A VR + + + VD AE+ CLKA+ LF + GL D VE+LQ++AQV
Sbjct: 273 RAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQV 332
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR +P+QP RFGRLLL R +P++ + +FF + V T +E L+ DM
Sbjct: 333 ALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDM 388
>gi|397504531|ref|XP_003822842.1| PREDICTED: COUP transcription factor 1 [Pan paniscus]
Length = 523
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 102/177 (57%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 330 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 389
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + V AV+L S+ GL D+ +E+LQ+++Q
Sbjct: 390 DRVVAFMDHIRIFQEQVEKLKALHVXXXXXXXXGAVLLEVSDACGLSDAAHIESLQEKSQ 449
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 450 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 506
>gi|216409732|dbj|BAH02303.1| nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
Length = 401
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 103/176 (58%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WA++ F LP DQV LL SWSELF+LNA Q +LPL + L A H A +
Sbjct: 212 VEWARH-GFFPELPVADQVALLRMSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAE 270
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A VR + + + VD AE+ CLKA+ LF + GL D VE+LQ++AQV
Sbjct: 271 RAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQV 330
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR +P+QP RFGRLLL R +P++ + +FF + V T +E L+ DM
Sbjct: 331 ALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDM 386
>gi|426228806|ref|XP_004008487.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
F member 6, partial [Ovis aries]
Length = 382
Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 102/186 (54%), Gaps = 10/186 (5%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEE-----SWSELFLLNAIQWSLPLLESSPLFNASEHVA 57
V+WA++ P F LP D V SWSELF+LNA Q +LPL + L A H A
Sbjct: 182 VEWARHAPFFPELPGADPVAPAARGGRRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAA 241
Query: 58 AVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQ 117
+ +A VR + + + VD AE+ CLKA+ LF + GL D VE+LQ
Sbjct: 242 PMAAERAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQ 301
Query: 118 DQAQVMLAQHVRTHHPAQPARFGRLLLM-----TSQCRNIPSARVQHIFFAKTVANTSME 172
++AQV L ++VR +P+QP RFGRLLL + R +P++ + +FF + V T +E
Sbjct: 302 EKAQVALTEYVRAQYPSQPQRFGRLLLRLPALGARRARAVPASLISQLFFMRLVGKTPIE 361
Query: 173 KLLCDM 178
L+ DM
Sbjct: 362 TLIRDM 367
>gi|156394045|ref|XP_001636637.1| predicted protein [Nematostella vectensis]
gi|156223742|gb|EDO44574.1| predicted protein [Nematostella vectensis]
Length = 196
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 104/178 (58%), Gaps = 3/178 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M WAK + F+ L DQV LL E+WS++F++N +QW++P E +P+ S+ V P
Sbjct: 13 MTAHWAKKVKHFSELSHFDQVTLLRENWSKVFIINLVQWAMPF-EIAPI--VSDIVEKTP 69
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+ + LN V+ + + + AEF+ LKA+ LF +T L D++Q++ +Q++
Sbjct: 70 GQHLDKVLHTMGKLNEVVFKLVQLQLSRAEFSLLKALALFNPDTEQLADAVQIQAVQNKT 129
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
Q L +++R H+P P RFG++LL + + ++H+FF K + +TS+ L+ D+
Sbjct: 130 QNALEEYIRVHYPQTPNRFGQVLLRLTALGAVECKIIEHVFFNKLLGSTSIYTLVDDI 187
>gi|47217403|emb|CAG00763.1| unnamed protein product [Tetraodon nigroviridis]
Length = 432
Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 104/202 (51%), Gaps = 26/202 (12%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
++WA+N+P F LP +QV LL SWSELF+LNA Q SLP+ + L A H + +
Sbjct: 216 IEWARNIPYFPELPVSEQVALLRLSWSELFILNAAQSSLPIHMAPLLAAAGFHSSPMSAE 275
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK--------------------- 101
+ VRV + + + VD AE++CLKA+ LF
Sbjct: 276 RVVSFMDQVRVFQDQVDKLNRLQVDTAEYSCLKAIALFSPGVQSTACTRRLWERSRTTTS 335
Query: 102 -----SETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSAR 156
++ GL D VE+LQ++AQV L ++ R +P QP RFGRLLL R +P+
Sbjct: 336 GLLSPTDACGLTDPAHVESLQEKAQVALTEYERMQYPGQPQRFGRLLLRLPALRAVPANL 395
Query: 157 VQHIFFAKTVANTSMEKLLCDM 178
+ +FF + V T +E L+ DM
Sbjct: 396 ISQLFFMRLVGKTPIETLIRDM 417
>gi|340712645|ref|XP_003394866.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Bombus terrestris]
Length = 425
Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 102/180 (56%), Gaps = 3/180 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAV+W LP F +L DQ++LLE SW++LFLL+ QWS+ + L + A +P
Sbjct: 243 MAVRWVCCLPLFQSLSKNDQLLLLEGSWTQLFLLHLAQWSISW-NITGLLEDEQVRARLP 301
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+ + T + + + RFR + D +E+ C+KAV LF ET GL S ++ LQDQA
Sbjct: 302 D--EATTNQQLITIQDTICRFRQLSPDMSEWGCMKAVALFTPETEGLHASESIKMLQDQA 359
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
Q +L + ++ + QP R G L+ + + +I V+ +FF +T+ + +LL DMY+
Sbjct: 360 QCILGDYTKSRYQRQPGRSGTLMHVVGRLTSIFPKLVERLFFHETIGEIPISRLLVDMYQ 419
>gi|383858852|ref|XP_003704913.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Megachile rotundata]
Length = 392
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 103/182 (56%), Gaps = 21/182 (11%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
AV+WA+++ SF LP+RDQ ILLEESWSELF+L A QW+ P+ E VP
Sbjct: 221 FAVRWARSIHSFLQLPYRDQTILLEESWSELFVLTAAQWNFPV----------EETTLVP 270
Query: 61 NGKASQTAA----DVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
N S+ +VR L +L + L+ VD +E+ACLKA+VLFK E RGL + +V L
Sbjct: 271 NDLLSERKEVLVDEVRRLRELLGKCALLRVDHSEYACLKAIVLFKGEARGLCEPGRVTAL 330
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
Q+Q + + R GRLLL+ R + + +Q + F TV + S+E+LL
Sbjct: 331 QEQTVAVFCER-------DARRVGRLLLLLPPARALCRSTLQELLFKPTVGDVSVERLLG 383
Query: 177 DM 178
DM
Sbjct: 384 DM 385
>gi|402590411|gb|EJW84341.1| hypothetical protein WUBG_04747 [Wuchereria bancrofti]
Length = 537
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 106/182 (58%), Gaps = 3/182 (1%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNAS--EHVAAV 59
AV+WAKN+P F L DQ+ LL SW+ELF++NA Q+ +P+ +PL AS +
Sbjct: 340 AVEWAKNIPFFNELNDTDQLTLLRASWAELFVVNAAQFGMPV-HVAPLLAASGLHSSPPL 398
Query: 60 PNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
P + +RV G ++R + + +D AEF LKAV+LF + GL D ++VE +Q++
Sbjct: 399 PTDQLVVFMDRIRVFQGQIERLKALQMDLAEFCSLKAVILFSIDCCGLNDVIRVETIQEK 458
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
Q L ++ RT Q RFGRLLL R+I ++ ++ +FF K V T +E LL DM
Sbjct: 459 VQSALEEYCRTQKQLQIGRFGRLLLRLPSLRSISASVIEQLFFVKLVGETPIEFLLRDML 518
Query: 180 KN 181
+
Sbjct: 519 RT 520
>gi|124431273|gb|ABN11285.1| ultraspiracle protein [Bemisia tabaci]
Length = 251
Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 98/182 (53%), Gaps = 7/182 (3%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
++WAK++P F LP DQVILL+ W+EL + S+ + + L V
Sbjct: 70 IEWAKHIPHFTELPVEDQVILLKSGWNELLIAGFSHRSMSVKDGIMLATG----LVVHRN 125
Query: 63 KASQTAADV---RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
A Q RVL ++ + R + +D E CL+++VLF E +GLK + QVENL+++
Sbjct: 126 CAHQAGVGAIFDRVLTELVAKMREMKMDKTELGCLRSIVLFNPEAKGLKSTQQVENLREK 185
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
+L ++ R +P Q RF +LLL R+I ++H+FF K V NTS++ L M
Sbjct: 186 VYAILEEYCRQTYPDQSGRFAKLLLRLPALRSIGLKCLEHLFFFKLVGNTSIDSFLLSML 245
Query: 180 KN 181
++
Sbjct: 246 ES 247
>gi|321470051|gb|EFX81029.1| dissatisfaction-like protein [Daphnia pulex]
Length = 394
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 105/190 (55%), Gaps = 11/190 (5%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPL----LESSPLFNASEHV 56
MAV+W + L F L DQ +LL+ESW ELFLL QWS P + + L N +
Sbjct: 183 MAVRWVRWLTPFQTLSRADQQLLLQESWKELFLLYLAQWSSPWDLGAILTQRLMNRQQQQ 242
Query: 57 AAVPNGKASQTAAD-------VRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKD 109
+G AD ++ + ++ R+R + D +E CLKA+ +FK ET GL +
Sbjct: 243 QQQQHGGMRMMQADDLLLATEIKTIQELMSRYRQLSPDGSECGCLKAIAVFKPETGGLSE 302
Query: 110 SLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANT 169
VE +QDQAQ +LA +VR +P Q RFGRLLL+ R + S+ V+ +FF T+
Sbjct: 303 VRPVELMQDQAQCILADYVRHRYPRQLTRFGRLLLLLPCLRLVRSSTVELLFFKDTLGEV 362
Query: 170 SMEKLLCDMY 179
++ ++L D+Y
Sbjct: 363 AINRVLDDIY 372
>gi|328496564|gb|AEB21388.1| COUP-TF protein [Hydractinia echinata]
Length = 339
Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 101/176 (57%), Gaps = 3/176 (1%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
A++WAKN+P F L DQ+ L++ W ELF+LN + PL + L N++ + +P
Sbjct: 142 AIEWAKNIPIFPTLTTGDQIALIKLGWKELFVLNLGKCQSPLRLNDVLSNSN--LDGLPE 199
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+A+ V+ L + + + +D AE+ACLKA++LF +T L +S + LQ++A
Sbjct: 200 YQAT-FYEHVKALQTQIDTLKSLQIDAAEYACLKAMILFTPDTPSLNNSAYIHTLQEKAM 258
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCD 177
L + +T +P QPARFG+LLL S R I + ++ +FF V T +E ++ D
Sbjct: 259 NALESYTKTKYPLQPARFGKLLLRLSSIRPINTVVIEQLFFTWLVGKTPIETIIQD 314
>gi|383859045|ref|XP_003705008.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Megachile rotundata]
Length = 442
Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 100/189 (52%), Gaps = 20/189 (10%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLP-----LLESSPLFNASEH 55
M V+W LP F +L DQ++LLE SW++LFLL+ QWS+ LLE +
Sbjct: 259 MTVRWVCCLPLFQSLSKNDQLLLLEGSWTQLFLLHLAQWSISWDITGLLEDEQI------ 312
Query: 56 VAAVPNGKASQTAADVR----VLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSL 111
G+ S+ + ++ ++ RFR + D E C+KAV LF ET GL +
Sbjct: 313 -----RGRFSKDEVGINQELIIIQAIVCRFRQLSPDVGECGCMKAVALFTPETEGLHATE 367
Query: 112 QVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSM 171
V+ LQDQAQ +L + + + QP R G L+ + +++ S V+ +FF +TV +
Sbjct: 368 SVKMLQDQAQCILGDYTTSRYLRQPGRSGTLMYLVGYLKSVSSKTVERLFFHETVGEIPI 427
Query: 172 EKLLCDMYK 180
+LL +MY+
Sbjct: 428 SRLLVNMYQ 436
>gi|62738907|pdb|1Z5X|U Chain U, Hemipteran Ecdysone Receptor Ligand-Binding Domain
Complexed With Ponasterone A
Length = 262
Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 96/179 (53%), Gaps = 7/179 (3%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
++WAK++P F LP DQVILL+ W+EL + S+ + + L V
Sbjct: 81 IEWAKHIPHFTELPVEDQVILLKSGWNELLIAGFSHRSMSVKDGIMLATG----LVVHRN 136
Query: 63 KASQTAADV---RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
A Q RVL ++ + R + +D E CL+++VLF E +GLK + QVENL+++
Sbjct: 137 CAHQAGVGAIFDRVLTELVAKMREMKMDKTELGCLRSIVLFNPEAKGLKSTQQVENLREK 196
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
+L ++ R +P Q RF +LLL R+I ++H+FF K V NTS++ L M
Sbjct: 197 VYAILEEYCRQTYPDQSGRFAKLLLRLPALRSIGLKCLEHLFFFKLVGNTSIDSFLLSM 255
>gi|5631312|dbj|BAA82618.1| retinoid X receptor [Polyandrocarpa misakiensis]
Length = 363
Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 99/176 (56%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + + S L + HV
Sbjct: 154 VEWAKRIPHFSSLPLEDQVILLRAGWNELLIASFSHRSIDV-KDSILLASGLHVHRHSAH 212
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A RVL ++ + R + +D E CL+A+VLF + + L DS +E+L+++
Sbjct: 213 QAGVGPIFDRVLTELVSKMRDMMMDKTELGCLRAIVLFNPDVKNLSDSAHIESLREKVYA 272
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + R+ +P QP RF +LLL R+I ++H+FF K + +T ++K L +M
Sbjct: 273 SLEAYCRSKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDKFLMNM 328
>gi|326916109|ref|XP_003204353.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Meleagris gallopavo]
Length = 339
Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 99/164 (60%), Gaps = 7/164 (4%)
Query: 25 EESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNGKASQTAADVRVLNGVLQRFRLV 84
E++W ELF+L QW++P+ ++ L + + + K ++ ++++ L V+ RFR +
Sbjct: 173 EDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARFRQL 232
Query: 85 GVDPAEFACLKAVVLFK-------SETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPA 137
+D EFACLK +V FK SE R +++ + LQD+AQ+ L ++ T +P QP
Sbjct: 233 RLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPC 292
Query: 138 RFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYKN 181
RFG+LLL+ R+I + ++ +FF KT+ N + +LL DMYK+
Sbjct: 293 RFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRLLSDMYKS 336
>gi|419590185|dbj|BAM66778.1| retinoid X receptor [Polyandrocarpa misakiensis]
Length = 539
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 99/176 (56%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + +S L + HV
Sbjct: 330 VEWAKRIPHFSSLPLEDQVILLRAGWNELLIASFSHRSIDVKDSI-LLASGLHVHRHSAH 388
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A RVL ++ + R + +D E CL+A+VLF + + L DS +E+L+++
Sbjct: 389 QAGVGPIFDRVLTELVSKMRDMMMDKTELGCLRAIVLFNPDVKNLSDSAHIESLREKVYA 448
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + R+ +P QP RF +LLL R+I ++H+FF K + +T ++K L +M
Sbjct: 449 SLEAYCRSKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDKFLMNM 504
>gi|189095956|pdb|2Q60|A Chain A, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
gi|189095957|pdb|2Q60|B Chain B, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
gi|189095958|pdb|2Q60|C Chain C, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
gi|189095959|pdb|2Q60|D Chain D, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
Length = 258
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 99/179 (55%), Gaps = 1/179 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + + S L + HV
Sbjct: 75 VEWAKRIPHFSSLPLEDQVILLRAGWNELLIASFSHRSIDV-KDSILLASGLHVHRHSAH 133
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A RVL ++ + R + +D E CL+AVVLF + + DS +E+L+++
Sbjct: 134 QAGVGPIFDRVLTELVSKMRDMMMDKTELGCLRAVVLFNPDVKNPSDSAHIESLREKVYA 193
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYKN 181
L + R+ +P QP RF +LLL R+I ++H+FF K + +T ++K L +M +
Sbjct: 194 SLEAYCRSKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDKFLMNMLET 252
>gi|345497210|ref|XP_001599315.2| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Nasonia
vitripennis]
Length = 417
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/183 (40%), Positives = 106/183 (57%), Gaps = 23/183 (12%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
+AVKW +++ SF L +RDQ ILLEESW ELF+L A QW+ P +E S L A H++ P
Sbjct: 246 LAVKWPRSISSFLQLSYRDQAILLEESWCELFVLTAAQWNFP-VEESQLIPA--HLS--P 300
Query: 61 NGKASQTAAD-VRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
+ K Q +D R L +L R ++ +D +E+ACLKA+VLFK E+RGL D+ +V LQ+Q
Sbjct: 301 DRK--QILSDEARRLRELLARCAILRIDHSEYACLKAIVLFKGESRGLCDAARVTALQEQ 358
Query: 120 AQVMLAQHVRTHHPAQPARFGR----LLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLL 175
+L+ R G L + CR I +Q + F TV + S+E+LL
Sbjct: 359 TVSVLSDR-------GAGRIGHLLLLLPPARALCRRI----LQELLFKPTVGDVSVERLL 407
Query: 176 CDM 178
DM
Sbjct: 408 DDM 410
>gi|241707738|ref|XP_002403220.1| zinc finger, C4 type, putative [Ixodes scapularis]
gi|215505031|gb|EEC14525.1| zinc finger, C4 type, putative [Ixodes scapularis]
Length = 299
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 101/183 (55%), Gaps = 28/183 (15%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M VKW K + + ALP RDQ+ LLEE W ELF+L+A Q+ LPL E +PL A+ +++ P
Sbjct: 140 MNVKWMKTVTALTALPMRDQLTLLEEGWRELFVLSAAQFMLPL-EVAPLL-AAAGLSSEP 197
Query: 61 NG--KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQD 118
+ + + +++R ++ RF+ + VD E+AC+KA++LFK+ + +
Sbjct: 198 STSERVATLVSEIRNFQEIIARFKEMQVDATEYACVKAILLFKTCECSSTNCM------- 250
Query: 119 QAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
P RFG+LLL R + + ++ +FF KT+ +E+LLCDM
Sbjct: 251 -----------------PFRFGKLLLTLPCLRTVSATAIEDLFFRKTIGAIPIERLLCDM 293
Query: 179 YKN 181
YK+
Sbjct: 294 YKS 296
>gi|3098336|gb|AAC15589.1| retinoid X receptor [Amblyomma americanum]
Length = 414
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 98/184 (53%), Gaps = 17/184 (9%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WA+ +P F LP D+ LL+ W+EL + S+ + + L S H
Sbjct: 233 VQWARRIPHFEELPIEDRTALLKAGWNELLIAAFSHRSVAVRDGIVLATGLVVQRHSAHG 292
Query: 57 AAVPNGKASQTAADV--RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVE 114
A V D+ RVL ++ + R + +D E CL+AVVLF + +GL+++ +VE
Sbjct: 293 AGV---------GDIFDRVLAELVAKMRDMKMDKTELGCLRAVVLFNPDAKGLRNATRVE 343
Query: 115 NLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKL 174
L+++ L +H R HHP QP RFG+LLL R+I ++H+FF K + +T ++
Sbjct: 344 ALREKVYAALEEHCRRHHPDQPGRFGKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDSF 403
Query: 175 LCDM 178
L +M
Sbjct: 404 LLNM 407
>gi|7766906|pdb|1DKF|A Chain A, Crystal Structure Of A Heterodimeric Complex Of Rar And
Rxr Ligand-Binding Domains
Length = 233
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 96/176 (54%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + +A S+ + + L HV
Sbjct: 56 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASASHRSIAV-KDGILLATGLHVHRNSAH 114
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 115 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 174
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 175 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 230
>gi|410949022|ref|XP_003981224.1| PREDICTED: COUP transcription factor 1, partial [Felis catus]
Length = 335
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 96/177 (54%), Gaps = 12/177 (6%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 154 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 213
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + AC GL D+ +E+LQ+++Q
Sbjct: 214 DRVVAFMDHIRIFQEQVEKLKXXXXXXXXXAC------------GLSDAAHIESLQEKSQ 261
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 262 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 318
>gi|83638436|gb|ABC33911.1| retinoid X receptor alpha transcript variant 1 [Sus scrofa]
Length = 374
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 96/176 (54%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 192 VEWAKRVPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 250
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 251 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 310
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I R++H+FF K + +T ++ L +M
Sbjct: 311 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKRLEHLFFFKLIGDTPIDTFLMEM 366
>gi|50539758|ref|NP_001002345.1| retinoic acid receptor RXR-gamma-B [Danio rerio]
gi|82200328|sp|Q6DHP9.1|RXRGB_DANRE RecName: Full=Retinoic acid receptor RXR-gamma-B; AltName:
Full=Nuclear receptor subfamily 2 group B member 3-B;
AltName: Full=Retinoid X receptor gamma-B
gi|49902731|gb|AAH75918.1| Zgc:92183 [Danio rerio]
gi|124054092|gb|ABM89230.1| retinoid X receptor gamma b [Danio rerio]
Length = 452
Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 96/176 (54%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 270 VEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSI-TVKDGILLGTGLHVHRSSAH 328
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D E CL+A+VLF + +GL +SL+VE L+++
Sbjct: 329 SAGVGSIFNRVLTELVSKMKDMQMDKTELGCLRAIVLFNPDAKGLSNSLEVEALREKVYA 388
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 389 SLETYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 444
>gi|301753845|ref|XP_002912831.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
F member 6-like, partial [Ailuropoda melanoleuca]
Length = 323
Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 101/176 (57%), Gaps = 11/176 (6%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WA++ P F LP DQV LL SWSELF+LN + L ++P+ A+E A +
Sbjct: 144 VEWARHAPFFPELPVADQVALLRLSWSELFVLNXPLLAAAGLHAAPM--AAERAVAFMD- 200
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
VR + + + VD +E+ CLKA+ LF + GL D VE+LQ++AQV
Sbjct: 201 -------QVRAFQEQVDKLGRLQVD-SEYGCLKAIALFTPDACGLSDPAHVESLQEKAQV 252
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR +P+QP RFGRLLL R +P++ + +FF + V T +E L+ DM
Sbjct: 253 ALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDM 308
>gi|301087323|gb|ADK60866.1| retinoid X receptor [Haliotis diversicolor]
Length = 441
Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 95/179 (53%), Gaps = 1/179 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F LP DQVILL W+EL + S+ ++ L HV
Sbjct: 259 VEWAKRIPHFTELPLEDQVILLRAGWNELLIAGFSHRSI-AVKDGILLATGLHVHRSSAH 317
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A RVL ++ + R + +D E CL+A+VLF + +GL +VE L+++
Sbjct: 318 QAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVLFNPDAKGLSAVQEVEQLREKVYA 377
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYKN 181
L ++ +T +P +P RF +LLL R+I ++H+FF K + +T ++ L +M +N
Sbjct: 378 SLEEYCKTRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEN 436
>gi|1710719|sp|P51128.1|RXRA_XENLA RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
Length = 488
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 96/176 (54%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 306 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 364
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + L+VE L+++
Sbjct: 365 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPLEVEALREKVYA 424
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 425 SLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 480
>gi|443691595|gb|ELT93409.1| hypothetical protein CAPTEDRAFT_164614 [Capitella teleta]
Length = 540
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 98/185 (52%), Gaps = 13/185 (7%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLN------AIQWSLPLLESSPLFNASEHV 56
V WAK +P F LP DQVILL W+EL + A++ + L + +S H
Sbjct: 358 VDWAKRVPHFTELPLEDQVILLRAGWNELLIAGFSHRSTAVKDGILLATGLHVHRSSAHQ 417
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V T D RVL ++ + R + +D E CL+A+VLF + +GL VE L
Sbjct: 418 AGV------GTIFD-RVLTELVAKMREMNMDKTELGCLRAIVLFNPDAKGLSAITDVEAL 470
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+++ L ++ +TH+P +P RF +LLL R+I ++H+FF K + +T ++ L
Sbjct: 471 REKVYASLEEYCKTHYPEEPGRFAKLLLRLPALRSIGLKCMEHLFFFKLIGDTPIDSFLM 530
Query: 177 DMYKN 181
+M ++
Sbjct: 531 EMLES 535
>gi|211939465|pdb|3EYB|A Chain A, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
gi|211939466|pdb|3EYB|B Chain B, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
gi|211939467|pdb|3EYB|C Chain C, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
gi|211939468|pdb|3EYB|D Chain D, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
Length = 219
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + S+ + + L + HV
Sbjct: 44 VEWAKRIPHFSDLPIDDQVILLRAGWNELLIAAFSHRSIDV-KDGILLASGLHVHRSSAH 102
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A RVL ++ + R + +D E CL+A+VLF + +GL D VE+L+++
Sbjct: 103 QAGVGTIFDRVLTELVAKMRDMKMDKTELGCLRAIVLFNPDAKGLTDPSLVESLREKVYA 162
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 163 SLEEYCKQQYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 218
>gi|51860121|gb|AAU11312.1| COUP-TF1 nuclear orphan receptor, partial [Hydra vulgaris]
Length = 453
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 105/179 (58%), Gaps = 2/179 (1%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F+ALP DQ+ LL+ SWSEL++L+ Q + ++ + ++++ +
Sbjct: 128 AVEWARNVPFFSALPTSDQIALLKSSWSELYILSTSQHCIAFQINARALTSEQNLSEIKK 187
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
A V++ +++RF+ + D AEF+CLKA+VLF ++ GL + +ENLQ++AQ
Sbjct: 188 RSEGANEASVKMFEELVERFKNLQTDAAEFSCLKALVLFNPDSPGLGNPSLIENLQEKAQ 247
Query: 122 VMLAQHVRTHHPAQP--ARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++R + Q RFG+LLL I A ++ +FF + + +++ L+ M
Sbjct: 248 SALEDYLRQQNATQSYHNRFGKLLLRLPALSLIRPATIEALFFPRHHGSQNIDSLVGSM 306
>gi|20302776|gb|AAM18897.1|AF391295_6 unknown [Branchiostoma floridae]
Length = 232
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 96/178 (53%), Gaps = 1/178 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + S+ + + L + HV
Sbjct: 19 VEWAKRIPHFSDLPIDDQVILLRAGWNELLIAAFSHRSIDV-KDGILLASGLHVHRSSAH 77
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A RVL ++ + R + +D E CL+A+VLF + +GL D VE+L+++
Sbjct: 78 QAGVGTIFDRVLTELVAKMRDMKMDKTELGCLRAIVLFNPDAKGLTDPSLVESLREKVYA 137
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
L ++ + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M +
Sbjct: 138 SLEEYCKQQYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLE 195
>gi|146332014|gb|ABQ22513.1| retinoic acid receptor RXR-alpha-like protein [Callithrix jacchus]
Length = 187
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L HV
Sbjct: 5 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAV-KDGILLATGLHVHRNSAH 63
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 64 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 123
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 124 SLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 179
>gi|242000854|ref|XP_002435070.1| retinoid X receptor, putative [Ixodes scapularis]
gi|215498400|gb|EEC07894.1| retinoid X receptor, putative [Ixodes scapularis]
Length = 400
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 96/182 (52%), Gaps = 13/182 (7%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WAK++P F LP D+++LL+ W+EL + S+ + + L S H
Sbjct: 219 VEWAKHIPHFVELPLEDRMVLLKAGWNELLIAAFSHRSIGVRDGIVLATGLVVQRHSAHG 278
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V A RVL ++ + R + +D E CL+AVVLF E +GL+ + QVE L
Sbjct: 279 AGV-------GAIFDRVLTELVAKMREMKMDRTELGCLRAVVLFNPEAKGLRSTAQVEAL 331
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+++ L +H R +P QP RF +LLL R+I ++H+FF K + +T ++ L
Sbjct: 332 REKVYAALEEHCRQQYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDNFLL 391
Query: 177 DM 178
M
Sbjct: 392 SM 393
>gi|449688240|ref|XP_002168741.2| PREDICTED: nuclear receptor subfamily 2 group F member 1-B-like
[Hydra magnipapillata]
Length = 334
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 105/179 (58%), Gaps = 2/179 (1%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F+ALP DQ+ LL+ SWSEL++L+ Q + ++ + ++++ +
Sbjct: 9 AVEWARNVPFFSALPTSDQIALLKSSWSELYILSTSQHCIAFQINARALTSEQNLSEIKK 68
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
A V++ +++RF+ + D AEF+CLKA+VLF ++ GL + +ENLQ++AQ
Sbjct: 69 RSEGANEASVKMFEELVERFKNLQTDAAEFSCLKALVLFNPDSPGLGNPSLIENLQEKAQ 128
Query: 122 VMLAQHVRTHHPAQP--ARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++R + Q RFG+LLL I A ++ +FF + + +++ L+ M
Sbjct: 129 SALEDYLRQQNATQSYHNRFGKLLLRLPALSLIRPATIEALFFPRHHGSQNIDSLVGSM 187
>gi|156387775|ref|XP_001634378.1| predicted protein [Nematostella vectensis]
gi|156221460|gb|EDO42315.1| predicted protein [Nematostella vectensis]
Length = 351
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 99/184 (53%), Gaps = 16/184 (8%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V WA+ L +F L DQ+ LL+ +W++LFLL A SPL + + A N
Sbjct: 152 VDWARKLTTFNNLMDSDQITLLKMAWTDLFLLEA--------SRSPLQLYVQQMYATINA 203
Query: 63 KASQTAADV--------RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVE 114
+ Q + +V R+ +R R +G+D E LK +VLF+++ + QVE
Sbjct: 204 QTKQLSMEVIVKRMEYARLFQEQAERIRNLGMDMTEHFHLKCIVLFRADGSLINQPRQVE 263
Query: 115 NLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKL 174
LQD +Q L Q++R+ +P+QP RFG+LLLM S R + S ++ +FFA + SM ++
Sbjct: 264 VLQDTSQSSLEQYIRSQYPSQPTRFGKLLLMLSSLRKVESTVIEQLFFADVLRGASMGEV 323
Query: 175 LCDM 178
L M
Sbjct: 324 LKKM 327
>gi|239782043|pdb|3H0A|A Chain A, Crystal Structure Of Peroxisome Proliferator-Activated
Receptor Gamma (Pparg) And Retinoic Acid Receptor Alpha
(Rxra) In Complex With 9-Cis Retinoic Acid, Co-Activator
Peptide, And A Partial Agonist
Length = 228
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L HV
Sbjct: 53 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAV-KDGILLATGLHVHRNSAH 111
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 112 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 171
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 172 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 227
>gi|384482349|pdb|3UVV|B Chain B, Crystal Structure Of The Ligand Binding Domains Of The
Thyroid Receptor:retinoid X Receptor Complexed With
3,3',5 Triiodo-L- Thyronine And 9-Cis Retinoic Acid
Length = 244
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L HV
Sbjct: 60 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAV-KDGILLATGLHVHRNSAH 118
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 119 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 178
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 179 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 234
>gi|426363508|ref|XP_004048881.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Gorilla gorilla
gorilla]
Length = 365
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L HV
Sbjct: 183 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAV-KDGILLATGLHVHRNSAH 241
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 242 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVETLREKVYA 301
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 302 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 357
>gi|13399885|pdb|1FM6|A Chain A, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Rosiglitazone And Co-Activator Peptides.
gi|13399887|pdb|1FM6|U Chain U, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Rosiglitazone And Co-Activator Peptides.
gi|13399893|pdb|1FM9|A Chain A, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Gi262570 And Co-Activator Peptides.
gi|14278179|pdb|1G5Y|A Chain A, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
gi|14278180|pdb|1G5Y|B Chain B, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
gi|14278181|pdb|1G5Y|C Chain C, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
gi|14278182|pdb|1G5Y|D Chain D, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
gi|14278313|pdb|1G1U|A Chain A, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
gi|14278314|pdb|1G1U|B Chain B, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
gi|14278315|pdb|1G1U|C Chain C, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
gi|14278316|pdb|1G1U|D Chain D, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
gi|17943020|pdb|1K74|A Chain A, The 2.3 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Ppargamma And Rxralpha Ligand
Binding Domains Respectively Bound With Gw409544 And
9-Cis Retinoic Acid And Co-Activator Peptides.
gi|78101296|pdb|2ACL|A Chain A, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
gi|78101298|pdb|2ACL|C Chain C, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
gi|78101300|pdb|2ACL|E Chain E, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
gi|78101302|pdb|2ACL|G Chain G, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
gi|321159910|pdb|3OZJ|A Chain A, Crystal Structure Of Human Retinoic X Receptor Alpha
Complexed With Bigelovin And Coactivator Src-1
gi|321159912|pdb|3OZJ|C Chain C, Crystal Structure Of Human Retinoic X Receptor Alpha
Complexed With Bigelovin And Coactivator Src-1
Length = 238
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L HV
Sbjct: 56 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAV-KDGILLATGLHVHRNSAH 114
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 115 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 174
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 175 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 230
>gi|357380532|pdb|3PCU|A Chain A, Crystal Structure Of Human Retinoic X Receptor Alpha
Ligand-Binding Domain Complexed With Lx0278 And Src1
Peptide
Length = 230
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L HV
Sbjct: 52 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAV-KDGILLATGLHVHRNSAH 110
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 111 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 170
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 171 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 226
>gi|56965939|pdb|1RDT|A Chain A, Crystal Structure Of A New Rexinoid Bound To The Rxralpha
Ligand Binding Doamin In The RxralphaPPARGAMMA
HETERODIMER
gi|223365895|pdb|3FC6|A Chain A, Hrxralpha & Mlxralpha With An Indole Pharmacophore,
Sb786875
gi|223365897|pdb|3FC6|C Chain C, Hrxralpha & Mlxralpha With An Indole Pharmacophore,
Sb786875
gi|226887770|pdb|3FAL|A Chain A, Humanrxr Alpha & Mouse Lxr Alpha Complexed With Retenoic
Acid And Gsk2186
gi|226887772|pdb|3FAL|C Chain C, Humanrxr Alpha & Mouse Lxr Alpha Complexed With Retenoic
Acid And Gsk2186
Length = 242
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L HV
Sbjct: 60 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAV-KDGILLATGLHVHRNSAH 118
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 119 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 178
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 179 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 234
>gi|58177375|pdb|1XLS|A Chain A, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
gi|58177376|pdb|1XLS|B Chain B, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
gi|58177377|pdb|1XLS|C Chain C, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
gi|58177378|pdb|1XLS|D Chain D, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
Length = 232
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L HV
Sbjct: 54 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAV-KDGILLATGLHVHRNSAH 112
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 113 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 172
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 173 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 228
>gi|9955002|pdb|1FBY|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To 9-Cis Retinoic Acid
gi|9955003|pdb|1FBY|B Chain B, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To 9-Cis Retinoic Acid
Length = 239
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L HV
Sbjct: 57 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAV-KDGILLATGLHVHRNSAH 115
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 116 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 175
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 176 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 231
>gi|312208011|pdb|3OAP|A Chain A, Crystal Structure Of Human Retinoid X Receptor
Alpha-Ligand Binding Domain Complex With 9-Cis Retinoic
Acid And The Coactivator Peptide Grip-1
Length = 231
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L HV
Sbjct: 53 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAV-KDGILLATGLHVHRNSAH 111
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 112 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 171
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 172 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 227
>gi|24987814|pdb|1MV9|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To The Eicosanoid Dha (Docosa Hexaenoic
Acid) And A Coactivator Peptide
gi|24987816|pdb|1MVC|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To The Synthetic Agonist Compound Bms 649
And A Coactivator Peptide
gi|24987862|pdb|1MZN|A Chain A, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
gi|24987864|pdb|1MZN|C Chain C, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
gi|24987866|pdb|1MZN|E Chain E, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
gi|24987868|pdb|1MZN|G Chain G, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
gi|158429278|pdb|2P1T|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Retinoid X Receptor Alpha In Complex With
3-(2'-Methoxy)- Tetrahydronaphtyl Cinnamic Acid And A
Fragment Of The Coactivator Tif-2
gi|158429280|pdb|2P1U|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Retinoid X Receptor Alpha In Complex With 3-(2'-Ethoxy)-
Tetrahydronaphtyl Cinnamic Acid And A Fragment Of The
Coactivator Tif-2
gi|158429282|pdb|2P1V|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Retinoid X Receptor Alpha In Complex With
3-(2'-Propoxy)- Tetrahydronaphtyl Cinnamic Acid And A
Fragment Of The Coactivator Tif-2
gi|237640540|pdb|3FUG|A Chain A, Crystal Structure Of The Retinoid X Receptor Ligand
Binding Domain Bound To The Synthetic Agonist
3-[4-Hydroxy-3-(3,5,
5,8,8-Pentamethyl-5,6,7,8-Tetrahydronaphthalen-2-Yl)-
Phenyl]acrylic Acid
gi|255917832|pdb|2ZXZ|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To A Synthetic Agonist Compound And A
Coactivator Peptide
gi|255917834|pdb|2ZY0|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To A Synthetic Agonist Compound And A
Coactivator Peptide
gi|255917836|pdb|2ZY0|C Chain C, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To A Synthetic Agonist Compound And A
Coactivator Peptide
gi|312207941|pdb|3NSP|A Chain A, Crystal Structure Of Tetrameric Rxralpha-Lbd
gi|312207942|pdb|3NSP|B Chain B, Crystal Structure Of Tetrameric Rxralpha-Lbd
gi|312207943|pdb|3NSQ|A Chain A, Crystal Structure Of Tetrameric Rxralpha-Lbd Complexed
With Antagonist Danthron
gi|312207944|pdb|3NSQ|B Chain B, Crystal Structure Of Tetrameric Rxralpha-Lbd Complexed
With Antagonist Danthron
gi|333944482|pdb|3R29|A Chain A, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2
gi|333944483|pdb|3R29|B Chain B, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2
gi|333944486|pdb|3R2A|A Chain A, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
gi|333944487|pdb|3R2A|B Chain B, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
gi|333944488|pdb|3R2A|C Chain C, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
gi|333944489|pdb|3R2A|D Chain D, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
gi|374977596|pdb|3R5M|A Chain A, Crystal Structure Of Rxralphalbd Complexed With The
Agonist Magnolol
gi|374977598|pdb|3R5M|C Chain C, Crystal Structure Of Rxralphalbd Complexed With The
Agonist Magnolol
Length = 240
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L HV
Sbjct: 58 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAV-KDGILLATGLHVHRNSAH 116
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 117 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 176
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 177 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 232
>gi|195999876|ref|XP_002109806.1| hypothetical protein TRIADDRAFT_21656 [Trichoplax adhaerens]
gi|190587930|gb|EDV27972.1| hypothetical protein TRIADDRAFT_21656 [Trichoplax adhaerens]
Length = 352
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 92/176 (52%), Gaps = 6/176 (3%)
Query: 3 VKWAKNLPSFAAL-PFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
V+W LP F+ + DQ+ LL WSELF+LNA QWS PL P S P
Sbjct: 174 VEWTVKLPYFSEMTSCTDQMTLLRSCWSELFILNAAQWSPPL-NMFPYSTTSNFYLTHPQ 232
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ + +RF +D EF+CLKA++LF + RGL + VE +Q+ Q
Sbjct: 233 EVMHHICLFQEAIVKLKKRF----IDTTEFSCLKALILFNPDVRGLVNPNYVEYIQENIQ 288
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCD 177
L QHV++ +P QP+RFG LLL R+I S ++ IFF + S++ LC+
Sbjct: 289 CALKQHVKSQYPDQPSRFGYLLLRLLMLRSISSKVIEEIFFTSVLCRRSIDIFLCE 344
>gi|56967064|pdb|1XDK|A Chain A, Crystal Structure Of The RarbetaRXRALPHA LIGAND BINDING
Domain Heterodimer In Complex With 9-Cis Retinoic Acid
And A Fragment Of The Trap220 Coactivator
gi|56967068|pdb|1XDK|E Chain E, Crystal Structure Of The RarbetaRXRALPHA LIGAND BINDING
Domain Heterodimer In Complex With 9-Cis Retinoic Acid
And A Fragment Of The Trap220 Coactivator
Length = 238
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L HV
Sbjct: 56 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAV-KDGILLATGLHVHRNSAH 114
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 115 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 174
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 175 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 230
>gi|158962474|dbj|BAF91724.1| retinoid X receptor [Ornithodoros moubata]
Length = 453
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 95/182 (52%), Gaps = 13/182 (7%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WAK++P F LP D+++LL+ W+EL + S+ + + L S H
Sbjct: 272 VEWAKHIPHFTELPLEDRMVLLKAGWNELLIAAFSHRSMXVKDGIVLATGLVVQRHSAHS 331
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V A RVL ++ + R + +D E CL+A+VLF E RGL+ S QVE L
Sbjct: 332 AGV-------GAIFDRVLTELVAKMRELRMDRTELGCLRAIVLFNPEARGLRCSAQVEAL 384
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+++ L H R +P QP RF +LLL R+I ++H+FF K + +T ++ L
Sbjct: 385 RERVYAALEDHCRQQYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDNFLL 444
Query: 177 DM 178
M
Sbjct: 445 SM 446
>gi|432908440|ref|XP_004077862.1| PREDICTED: retinoic acid receptor RXR-beta-A [Oryzias latipes]
Length = 443
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 102/187 (54%), Gaps = 11/187 (5%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLE----SSPLFNASEHVAA 58
V+WAK +P F+ LP DQVILL W+EL + + S+PL + +S L H A
Sbjct: 249 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIPLKDGGSLASELQRDGSHAAG 308
Query: 59 VPN--GKASQTAADV-----RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSL 111
V + S +A+V RVL ++ + R + +D E CL+A+VLF + +GL ++
Sbjct: 309 VGAIFDRESVQSAEVGAIFDRVLTELVNKMRDMQMDKTELGCLRAIVLFNPDAKGLSNTS 368
Query: 112 QVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSM 171
+VE L+++ L + + +P Q RF +LLL R+I ++H+FF K + +T +
Sbjct: 369 EVELLREKVYASLEAYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 428
Query: 172 EKLLCDM 178
+ L +M
Sbjct: 429 DTFLMEM 435
>gi|61679483|pdb|1XV9|A Chain A, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid, And 5b-Pregnane-3,20-Dione.
gi|61679485|pdb|1XV9|C Chain C, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid, And 5b-Pregnane-3,20-Dione.
gi|61679491|pdb|1XVP|A Chain A, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid And Citco
gi|61679493|pdb|1XVP|C Chain C, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid And Citco
Length = 236
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L HV
Sbjct: 54 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAV-KDGILLATGLHVHRNSAH 112
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 113 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 172
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 173 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 228
>gi|348533852|ref|XP_003454418.1| PREDICTED: retinoic acid receptor RXR-beta-A-like isoform 3
[Oreochromis niloticus]
Length = 434
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 103/187 (55%), Gaps = 11/187 (5%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPL----LESSPLFNASEHVAA 58
V+WAK +P F+ LP DQVILL W+EL + + S+PL L +S L S H A
Sbjct: 240 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIPLKDGVLLASELQRDSAHSAG 299
Query: 59 VPN--GKASQTAADV-----RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSL 111
V + S +A+V RVL ++ + R + +D E CL+A+VLF + +GL ++
Sbjct: 300 VGAIFDRESVQSAEVGAIFDRVLTELVNKMRDMQMDKIELGCLRAIVLFNPDAKGLSNTG 359
Query: 112 QVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSM 171
+VE L+++ L + + +P Q RF +LLL R+I ++H+FF K + +T +
Sbjct: 360 EVELLREKVYASLEAYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 419
Query: 172 EKLLCDM 178
+ L +M
Sbjct: 420 DTFLMEM 426
>gi|224983542|pdb|3E94|A Chain A, Crystal Structure Of Rxralpha Ligand Binding Domain In
Complex With Tributyltin And A Coactivator Fragment
gi|284055748|pdb|3KWY|A Chain A, Crystal Structure Of Rxralpha Ligand Binding Domain In
Complex With Triphenyltin And A Coactivator Fragment
Length = 244
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L HV
Sbjct: 62 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAV-KDGILLATGLHVHRNSAH 120
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 121 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 180
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 181 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 236
>gi|78100924|pdb|1XIU|A Chain A, Crystal Structure Of The Agonist-Bound Ligand-Binding
Domain Of Biomphalaria Glabrata Rxr
gi|78100925|pdb|1XIU|B Chain B, Crystal Structure Of The Agonist-Bound Ligand-Binding
Domain Of Biomphalaria Glabrata Rxr
Length = 230
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 94/179 (52%), Gaps = 1/179 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F LP DQVILL W+EL + S+ + + L HV
Sbjct: 48 VEWAKRIPHFTELPLEDQVILLRAGWNELLIAGFSHRSI-MAKDGILLATGLHVHRSSAH 106
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A RVL ++ + R + +D E CL+AVVLF + +GL +VE L+++
Sbjct: 107 QAGVGTIFDRVLTELVAKMRDMKMDKTELGCLRAVVLFNPDAKGLTAVQEVEQLREKVYA 166
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYKN 181
L ++ ++ +P +P RF +LLL R+I ++H+FF K + + ++ L +M +N
Sbjct: 167 SLEEYTKSRYPEEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDQPIDTFLMEMLEN 225
>gi|308198436|pdb|3A9E|A Chain A, Crystal Structure Of A Mixed Agonist-Bound Rar-Alpha And
Antagonist- Bound Rxr-Alpha Heterodimer Ligand Binding
Domains
Length = 240
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L HV
Sbjct: 58 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAV-KDGILLATGLHVHRNSAH 116
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 117 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 176
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 177 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 232
>gi|74902124|sp|Q5I7G2.1|RXR_LYMST RecName: Full=Retinoic acid receptor RXR; AltName: Full=Retinoid X
receptor; Short=LymRXR
gi|57164664|gb|AAW34268.1| retinoid X receptor [Lymnaea stagnalis]
Length = 436
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 94/179 (52%), Gaps = 1/179 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F LP DQVILL W+EL + S+ + + L HV
Sbjct: 254 VEWAKRIPHFTELPLEDQVILLRAGWNELLIAGFSHRSI-MAKDGILLATGLHVHRSSAH 312
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A RVL ++ + R + +D E CL+AVVLF + +GL +VE L+++
Sbjct: 313 QAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAVVLFNPDAKGLTAVQEVEQLREKVYA 372
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYKN 181
L ++ +T +P +P RF +LLL R+I ++H+FF K + + ++ L +M +N
Sbjct: 373 SLEEYTKTRYPEEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDQPIDTFLMEMLEN 431
>gi|355717622|gb|AES05998.1| retinoid X receptor, alpha [Mustela putorius furo]
Length = 202
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L HV
Sbjct: 20 VEWAKRVPHFSELPLDDQVILLRAGWNELLIASFSHRSITV-KDGILLATGLHVHRNSAH 78
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 79 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 138
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 139 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 194
>gi|405953743|gb|EKC21345.1| Retinoic acid receptor RXR-alpha [Crassostrea gigas]
Length = 446
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F LP DQVILL W+EL + S+ +++ L HV
Sbjct: 263 VEWAKRIPHFTELPLEDQVILLRAGWNELLIAGFSHRSI-VVKDGILLATGLHVHRSSAH 321
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A RVL ++ + R + +D E CL+A+VLF + +G+ +VE L+++
Sbjct: 322 QAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVLFNPDAKGVSAVSEVEQLREKVYA 381
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ + H+P +P RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 382 SLEEYCKMHYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLLEM 437
>gi|348533850|ref|XP_003454417.1| PREDICTED: retinoic acid receptor RXR-beta-A-like isoform 2
[Oreochromis niloticus]
Length = 426
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 103/187 (55%), Gaps = 11/187 (5%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPL----LESSPLFNASEHVAA 58
V+WAK +P F+ LP DQVILL W+EL + + S+PL L +S L S H A
Sbjct: 232 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIPLKDGVLLASELQRDSAHSAG 291
Query: 59 VPN--GKASQTAADV-----RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSL 111
V + S +A+V RVL ++ + R + +D E CL+A+VLF + +GL ++
Sbjct: 292 VGAIFDRESVQSAEVGAIFDRVLTELVNKMRDMQMDKIELGCLRAIVLFNPDAKGLSNTG 351
Query: 112 QVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSM 171
+VE L+++ L + + +P Q RF +LLL R+I ++H+FF K + +T +
Sbjct: 352 EVELLREKVYASLEAYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 411
Query: 172 EKLLCDM 178
+ L +M
Sbjct: 412 DTFLMEM 418
>gi|314955556|gb|ADT64885.1| retinoid X receptor [Gryllus firmus]
Length = 403
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 97/182 (53%), Gaps = 13/182 (7%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WAK++P F +LP DQV+LL W+EL + S+ + + L S H
Sbjct: 222 VEWAKHIPHFTSLPLEDQVLLLRAGWNELLIAAFSHRSMEVKDGIVLATGLTIHRNSAHQ 281
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V T D RVL ++ + R + +D E CL++V+LF + RGLK +VE L
Sbjct: 282 AGVG------TIFD-RVLTELVAKMREMKMDKTELGCLRSVILFNPDVRGLKSQQEVEML 334
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+++ L ++ RT HP +P RF +LLL R+I ++H+FF + + + ++ L
Sbjct: 335 REKVYAALEEYTRTTHPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIGDAPIDTFLM 394
Query: 177 DM 178
+M
Sbjct: 395 EM 396
>gi|314955486|gb|ADT64884.1| retinoid X receptor [Gryllus firmus]
Length = 403
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 97/182 (53%), Gaps = 13/182 (7%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WAK++P F +LP DQV+LL W+EL + S+ + + L S H
Sbjct: 222 VEWAKHIPHFTSLPLEDQVLLLRAGWNELLIAAFSHRSMEVKDGIVLATGLTIHRNSAHQ 281
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V T D RVL ++ + R + +D E CL++V+LF + RGLK +VE L
Sbjct: 282 AGVG------TIFD-RVLTELVAKMREMKMDKTELGCLRSVILFNPDVRGLKSQQEVEML 334
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+++ L ++ RT HP +P RF +LLL R+I ++H+FF + + + ++ L
Sbjct: 335 REKVYAALEEYTRTTHPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIGDAPIDTFLM 394
Query: 177 DM 178
+M
Sbjct: 395 EM 396
>gi|417401446|gb|JAA47609.1| Putative retinoic acid receptor rxr-alpha [Desmodus rotundus]
Length = 467
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 285 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRSSAH 343
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 344 SAGVGAIFDRVLTELVSKMRDMHMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 403
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 404 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 459
>gi|348533848|ref|XP_003454416.1| PREDICTED: retinoic acid receptor RXR-beta-A-like isoform 1
[Oreochromis niloticus]
Length = 412
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 98/180 (54%), Gaps = 11/180 (6%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPL----LESSPLFNASEHVAA 58
V+WAK +P F+ LP DQVILL W+EL + + S+PL L +S L S H A
Sbjct: 232 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIPLKDGVLLASELQRDSAHSAG 291
Query: 59 VPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQD 118
V A RVL ++ + R + +D E CL+A+VLF + +GL ++ +VE L++
Sbjct: 292 V-------GAIFDRVLTELVNKMRDMQMDKIELGCLRAIVLFNPDAKGLSNTGEVELLRE 344
Query: 119 QAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
+ L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 345 KVYASLEAYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 404
>gi|403301502|ref|XP_003941427.1| PREDICTED: retinoic acid receptor RXR-alpha [Saimiri boliviensis
boliviensis]
Length = 365
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L HV
Sbjct: 183 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAV-KDGILLATGLHVHRNSAH 241
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 242 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 301
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 302 SLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 357
>gi|302202572|gb|ADL09403.1| retinoid X receptor [Gryllus firmus]
Length = 403
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 97/182 (53%), Gaps = 13/182 (7%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WAK++P F +LP DQV+LL W+EL + S+ + + L S H
Sbjct: 222 VEWAKHIPHFTSLPLEDQVLLLRAGWNELLIAAFSHRSMEVKDGIVLATGLTIHRNSAHQ 281
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V T D RVL ++ + R + +D E CL++V+LF + RGLK +VE L
Sbjct: 282 AGVG------TIFD-RVLTELVAKMREMKMDKTELGCLRSVILFNPDVRGLKSQQEVEML 334
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+++ L ++ RT HP +P RF +LLL R+I ++H+FF + + + ++ L
Sbjct: 335 REKVYAALEEYTRTTHPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIGDAPIDTFLM 394
Query: 177 DM 178
+M
Sbjct: 395 EM 396
>gi|157831763|pdb|1LBD|A Chain A, Ligand-Binding Domain Of The Human Nuclear Receptor
Rxr-Alpha
Length = 282
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L HV
Sbjct: 100 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAV-KDGILLATGLHVHRNSAH 158
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 159 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 218
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 219 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 274
>gi|397503782|ref|XP_003822498.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Pan paniscus]
gi|402896147|ref|XP_003911168.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Papio anubis]
gi|410043384|ref|XP_520345.4| PREDICTED: retinoic acid receptor RXR-alpha [Pan troglodytes]
gi|193785958|dbj|BAG54745.1| unnamed protein product [Homo sapiens]
Length = 365
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L HV
Sbjct: 183 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAV-KDGILLATGLHVHRNSAH 241
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 242 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 301
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 302 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 357
>gi|296481981|tpg|DAA24096.1| TPA: retinoid X receptor, alpha [Bos taurus]
Length = 404
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 222 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 280
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 281 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 340
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 341 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 396
>gi|314955738|gb|ADT64886.1| retinoid X receptor [Gryllus firmus]
Length = 358
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 97/182 (53%), Gaps = 13/182 (7%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WAK++P F +LP DQV+LL W+EL + S+ + + L S H
Sbjct: 177 VEWAKHIPHFTSLPLEDQVLLLRAGWNELLIAAFSHRSMEVKDGIVLATGLTIHRNSAHQ 236
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V T D RVL ++ + R + +D E CL++V+LF + RGLK +VE L
Sbjct: 237 AGVG------TIFD-RVLTELVAKMREMKMDKTELGCLRSVILFNPDVRGLKSQQEVEML 289
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+++ L ++ RT HP +P RF +LLL R+I ++H+FF + + + ++ L
Sbjct: 290 REKVYAALEEYTRTTHPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIGDAPIDTFLM 349
Query: 177 DM 178
+M
Sbjct: 350 EM 351
>gi|345806213|ref|XP_858806.2| PREDICTED: retinoic acid receptor RXR-alpha isoform 11 [Canis lupus
familiaris]
Length = 492
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 96/176 (54%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 310 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 368
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D +E CL+A+VLF +++GL + +VE L+++
Sbjct: 369 SAGVGAIFDRVLTELVSKMRDMQMDKSELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 428
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 429 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 484
>gi|197941306|gb|ACH78357.1| retinoid X receptor alpha [Sebastiscus marmoratus]
Length = 331
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L HV
Sbjct: 149 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAI-KDGILLATGLHVHRNSAH 207
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 208 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYA 267
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 268 SLEAYCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 323
>gi|148725669|emb|CAN87977.1| retinoid x receptor, alpha b [Danio rerio]
Length = 202
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L HV
Sbjct: 20 VEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSIAV-KDGILLATGLHVHRNSAH 78
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 79 TAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPSEVEALRERVYA 138
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 139 SLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 194
>gi|27819113|gb|AAO22211.1| retinoid X receptor alpha [Carassius auratus]
Length = 297
Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L HV
Sbjct: 115 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAV-KDGILLATGLHVHRNSAH 173
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 174 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYA 233
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 234 SLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 289
>gi|146186456|gb|ABQ09280.1| retinoid X receptor alpha 1 [Oryzias latipes]
Length = 250
Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L HV
Sbjct: 75 VEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSIAV-KDGILLATGLHVHRNSAH 133
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 134 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYA 193
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 194 SLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 249
>gi|84579197|dbj|BAE73032.1| hypothetical protein [Macaca fascicularis]
Length = 462
Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 95/178 (53%), Gaps = 1/178 (0%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 278 MLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNS 336
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 337 AHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKV 396
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K +T ++ L +M
Sbjct: 397 YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLTGDTPIDTFLMEM 454
>gi|395741153|ref|XP_002820405.2| PREDICTED: retinoic acid receptor RXR-alpha-like [Pongo abelii]
Length = 318
Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 96/178 (53%), Gaps = 1/178 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L HV
Sbjct: 136 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSNRSIAV-KDGILLATGLHVHRNSAH 194
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 195 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 254
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M +
Sbjct: 255 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLE 312
>gi|149410285|ref|XP_001506054.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Ornithorhynchus
anatinus]
Length = 433
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 251 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 309
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 310 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 369
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 370 SLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 425
>gi|1710810|sp|P51129.1|RXRG_XENLA RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
Length = 470
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 96/176 (54%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L HV
Sbjct: 288 VEWAKRIPYFSDLPLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 346
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL ++ +VE L+++
Sbjct: 347 NAGVGSIFDRVLTELVSKMKDMDMDKSELGCLRAIVLFNPDAKGLSNAAEVEALREKVYA 406
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 407 TLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 462
>gi|395506404|ref|XP_003757522.1| PREDICTED: retinoic acid receptor RXR-alpha [Sarcophilus harrisii]
Length = 468
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 286 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 344
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 345 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 404
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 405 SLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 460
>gi|260828819|ref|XP_002609360.1| hypothetical protein BRAFLDRAFT_236165 [Branchiostoma floridae]
gi|229294716|gb|EEN65370.1| hypothetical protein BRAFLDRAFT_236165 [Branchiostoma floridae]
Length = 427
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + S+ + + L + HV
Sbjct: 249 VEWAKRIPHFSDLPIDDQVILLRAGWNELLIAAFSHRSIDVKDGI-LLASGLHVHRSSAH 307
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A RVL ++ + R + +D E CL+A+VLF + +GL D VE+L+++
Sbjct: 308 QAGVGTIFDRVLTELVAKMRDMKMDKTELGCLRAIVLFNPDAKGLTDPSLVESLREKVYA 367
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 368 SLEEYCKQQYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 423
>gi|68132036|gb|AAY85284.1| RXRalpha-B [Danio rerio]
Length = 365
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 183 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 241
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 242 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYA 301
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 302 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 357
>gi|431898965|gb|ELK07335.1| Retinoic acid receptor RXR-alpha [Pteropus alecto]
Length = 439
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 257 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 315
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 316 SAGVGAIFDRVLTELVSKMRDMHMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 375
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 376 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 431
>gi|149039210|gb|EDL93430.1| retinoid X receptor alpha, isoform CRA_b [Rattus norvegicus]
Length = 439
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 257 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 315
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 316 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 375
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 376 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 431
>gi|9931482|gb|AAG02188.1| retinoid-X-receptor [Cloning vector pFB-ERV]
Length = 472
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 290 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 348
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 349 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 408
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 409 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 464
>gi|444518523|gb|ELV12209.1| Retinoic acid receptor RXR-alpha [Tupaia chinensis]
Length = 386
Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 204 VEWAKRVPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 262
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 263 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 322
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 323 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 378
>gi|83026436|gb|ABB96254.1| retinoid X receptor, alpha [Homo sapiens]
Length = 452
Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 270 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 328
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 329 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 388
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 389 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 444
>gi|355752946|gb|EHH56992.1| hypothetical protein EGM_06542, partial [Macaca fascicularis]
Length = 453
Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 271 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 329
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 330 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 389
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 390 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 445
>gi|427785707|gb|JAA58305.1| Putative retinoid x receptor alpha a [Rhipicephalus pulchellus]
Length = 433
Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 95/182 (52%), Gaps = 13/182 (7%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WAK++P F LP D+++LL+ W+EL + S+ + + L S H
Sbjct: 252 VQWAKHIPHFEELPIEDRMVLLKAGWNELLIAAFSHRSIDVRDGIVLATGLVVQRHSAHS 311
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V A RVL ++ + R + +D E CL+AVVLF E +GL+ + QVE L
Sbjct: 312 AGV-------GAIFDRVLTELVAKMREMKMDRTELGCLRAVVLFNPEAKGLRSTAQVEAL 364
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+++ L H R +P QP RF +LLL R+I ++H+FF K + +T ++ L
Sbjct: 365 REKVYAALEDHCRQQYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDNFLI 424
Query: 177 DM 178
M
Sbjct: 425 TM 426
>gi|348505482|ref|XP_003440290.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like [Oreochromis
niloticus]
Length = 781
Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 599 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 657
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 658 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYA 717
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 718 SLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 773
>gi|4003528|gb|AAC95154.1| retinoic acid receptor RXR [Cloning vector pERV3]
Length = 479
Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 297 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 355
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 356 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 415
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 416 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 471
>gi|74194825|dbj|BAE26004.1| unnamed protein product [Mus musculus]
Length = 467
Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 285 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 343
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 344 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 403
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 404 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 459
>gi|355567352|gb|EHH23693.1| hypothetical protein EGK_07223, partial [Macaca mulatta]
Length = 453
Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 271 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 329
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 330 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 389
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 390 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 445
>gi|441623802|ref|XP_003279685.2| PREDICTED: retinoic acid receptor RXR-alpha [Nomascus leucogenys]
Length = 418
Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 236 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 294
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 295 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 354
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 355 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 410
>gi|1685271|gb|AAB36777.1| RXR alpha 2 [Mus musculus]
gi|1685273|gb|AAB36778.1| RXR alpha 3 [Mus musculus]
Length = 439
Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 257 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 315
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 316 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 375
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 376 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 431
>gi|363740474|ref|XP_003642339.1| PREDICTED: retinoic acid receptor RXR-alpha [Gallus gallus]
Length = 467
Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 285 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 343
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 344 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 403
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 404 SLEAYCKHKYPDQPGRFAKLLLRLPALRSISLKCLEHLFFFKLIGDTPIDTFLMEM 459
>gi|354501950|ref|XP_003513051.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Cricetulus
griseus]
gi|344245296|gb|EGW01400.1| Retinoic acid receptor RXR-alpha [Cricetulus griseus]
Length = 439
Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 257 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 315
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 316 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 375
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 376 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 431
>gi|358414696|ref|XP_887036.4| PREDICTED: retinoic acid receptor RXR-alpha isoform 4 [Bos taurus]
Length = 557
Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 375 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 433
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 434 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 493
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 494 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 549
>gi|210060988|pdb|3DZU|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Bvt.13, 9-Cis Retinoic Acid And Ncoa2
Peptide
gi|210060994|pdb|3DZY|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Rosiglitazone, 9-Cis Retinoic Acid And
Ncoa2 Peptide
gi|210061000|pdb|3E00|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Gw9662, 9-Cis Retinoic Acid And Ncoa2
Peptide
Length = 467
Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 285 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 343
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 344 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 403
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 404 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 459
>gi|365176244|gb|AEW68002.1| retinoid X receptor [Halocynthia roretzi]
Length = 453
Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F L DQ+ILL W+EL + + S+ + + S L + HV
Sbjct: 241 VEWAKRIPHFPKLVLDDQIILLRAGWNELLIASFSHRSIDV-KDSILLASGLHVHRHSAH 299
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A RVL ++ + R + +D E CL+A+VLF + + L D +E+L+++
Sbjct: 300 QAGVGPIFDRVLTELVSKMRDMMMDKTELGCLRAIVLFNPDVKNLSDPAHIESLREKVYA 359
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + R+ +P QP RF +LLL R+I ++H+FF K + +T ++K L DM
Sbjct: 360 SLEAYCRSKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDKFLMDM 415
>gi|4506755|ref|NP_002948.1| retinoic acid receptor RXR-alpha [Homo sapiens]
gi|133701|sp|P19793.1|RXRA_HUMAN RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
gi|35885|emb|CAA36982.1| unnamed protein product [Homo sapiens]
gi|84201602|gb|AAI10999.1| Retinoid X receptor, alpha [Homo sapiens]
gi|119608529|gb|EAW88123.1| retinoid X receptor, alpha, isoform CRA_b [Homo sapiens]
gi|119608530|gb|EAW88124.1| retinoid X receptor, alpha, isoform CRA_b [Homo sapiens]
gi|167773495|gb|ABZ92182.1| retinoid X receptor, alpha [synthetic construct]
gi|208965438|dbj|BAG72733.1| retinoid X receptor, alpha [synthetic construct]
gi|216409718|dbj|BAH02296.1| retinoid X receptor, alpha [Homo sapiens]
gi|325495497|gb|ADZ17354.1| retinoid X nuclear receptor alpha [Homo sapiens]
gi|380815422|gb|AFE79585.1| retinoic acid receptor RXR-alpha [Macaca mulatta]
gi|383420605|gb|AFH33516.1| retinoic acid receptor RXR-alpha [Macaca mulatta]
gi|226861|prf||1609194A retinoic acid receptor RXRalpha
Length = 462
Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 280 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 338
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 339 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 398
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 399 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 454
>gi|410222730|gb|JAA08584.1| retinoid X receptor, alpha [Pan troglodytes]
gi|410251064|gb|JAA13499.1| retinoid X receptor, alpha [Pan troglodytes]
gi|410306614|gb|JAA31907.1| retinoid X receptor, alpha [Pan troglodytes]
gi|410353913|gb|JAA43560.1| retinoid X receptor, alpha [Pan troglodytes]
Length = 462
Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 280 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 338
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 339 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 398
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 399 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 454
>gi|113197752|gb|AAI21596.1| LOC779621 protein [Xenopus (Silurana) tropicalis]
Length = 452
Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 96/176 (54%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L HV
Sbjct: 270 VEWAKRIPHFSDLPLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 328
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL ++ +VE L+++
Sbjct: 329 NAGVGSIFDRVLTELVSKMKDMEMDKSELGCLRAIVLFNPDAKGLSNAAEVEALREKVYA 388
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 389 TLESYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 444
>gi|327276463|ref|XP_003222989.1| PREDICTED: retinoic acid receptor RXR-alpha-like, partial [Anolis
carolinensis]
Length = 451
Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 269 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 327
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 328 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 387
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 388 SLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 443
>gi|148676425|gb|EDL08372.1| retinoid X receptor alpha [Mus musculus]
Length = 457
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 275 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 333
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 334 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 393
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 394 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 449
>gi|432888946|ref|XP_004075101.1| PREDICTED: retinoic acid receptor RXR-alpha-A [Oryzias latipes]
Length = 471
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 289 VEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 347
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 348 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYA 407
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 408 SLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 463
>gi|301608498|ref|XP_002933799.1| PREDICTED: retinoic acid receptor RXR-gamma [Xenopus (Silurana)
tropicalis]
Length = 468
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 96/176 (54%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L HV
Sbjct: 286 VEWAKRIPHFSDLPLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 344
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL ++ +VE L+++
Sbjct: 345 NAGVGSIFDRVLTELVSKMKDMEMDKSELGCLRAIVLFNPDAKGLSNAAEVEALREKVYA 404
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 405 TLESYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 460
>gi|6755384|ref|NP_035435.1| retinoic acid receptor RXR-alpha [Mus musculus]
gi|133702|sp|P28700.1|RXRA_MOUSE RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
gi|54022|emb|CAA46962.1| retinoid X receptor-alpha [Mus musculus]
gi|200878|gb|AAA40080.1| retinoid X receptor alpha [Mus musculus]
gi|187953011|gb|AAI38803.1| Retinoid X receptor alpha [Mus musculus]
gi|187954071|gb|AAI38801.1| Retinoid X receptor alpha [Mus musculus]
Length = 467
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 285 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 343
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 344 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 403
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 404 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 459
>gi|148747360|ref|NP_036937.2| retinoic acid receptor RXR-alpha [Rattus norvegicus]
gi|110781215|emb|CAL25727.1| retinoid X receptor alpha [Rattus norvegicus]
gi|110781217|emb|CAL25728.1| retinoid X receptor alpha [Rattus norvegicus]
gi|112982471|emb|CAL36079.1| retinoid X receptor alpha [Rattus norvegicus]
gi|149039209|gb|EDL93429.1| retinoid X receptor alpha, isoform CRA_a [Rattus norvegicus]
Length = 467
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 285 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 343
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 344 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 403
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 404 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 459
>gi|332025246|gb|EGI65420.1| Nuclear receptor subfamily 2 group E member 1 [Acromyrmex
echinatior]
Length = 393
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 101/178 (56%), Gaps = 13/178 (7%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
AV+WA+++ SF LP+RDQ ILLEESWSELF+L A QW+ P+ E++ + +P
Sbjct: 222 FAVRWARSIHSFLQLPYRDQTILLEESWSELFVLTAAQWNFPVDETTLV------SMDLP 275
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+ R L +L + + VD +E+ACLKA+VLFK+E+R L + +V LQ+Q
Sbjct: 276 TERREVLLDKARRLRELLAKCAALRVDHSEYACLKAIVLFKAESRNLCEPGRVSALQEQT 335
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
+ + R GRLLL+ R + A + + F TV + S+E+LL DM
Sbjct: 336 VAVFCER-------DARRVGRLLLLLPPARALCRATLHELLFKPTVGDVSVERLLGDM 386
>gi|464702|sp|Q05343.1|RXRA_RAT RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
gi|206819|gb|AAA42093.1| retinoid X receptor alpha [Rattus norvegicus]
Length = 467
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 285 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 343
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 344 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 403
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 404 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 459
>gi|301611491|ref|XP_002935274.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Xenopus
(Silurana) tropicalis]
Length = 459
Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 277 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 335
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 336 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPSEVEALREKVYA 395
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 396 SLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 451
>gi|147732610|sp|A2T929.2|RXRAA_DANRE RecName: Full=Retinoic acid receptor RXR-alpha-A; AltName:
Full=Nuclear receptor subfamily 2 group B member 1-A;
AltName: Full=RXRalpha-B; AltName: Full=Retinoid X
receptor alpha-A
Length = 430
Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 248 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 306
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 307 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYA 366
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 367 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 422
>gi|417515778|gb|JAA53699.1| retinoic acid receptor RXR-alpha [Sus scrofa]
Length = 467
Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 285 VEWAKRVPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 343
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 344 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 403
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 404 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 459
>gi|348574546|ref|XP_003473051.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Cavia porcellus]
Length = 549
Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 367 VEWAKRVPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 425
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 426 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 485
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 486 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 541
>gi|326930478|ref|XP_003211374.1| PREDICTED: LOW QUALITY PROTEIN: retinoic acid receptor
RXR-alpha-like [Meleagris gallopavo]
Length = 497
Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 315 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 373
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 374 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 433
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 434 SLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 489
>gi|39645799|gb|AAH63827.1| RXRA protein [Homo sapiens]
Length = 516
Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 334 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 392
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 393 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 452
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 453 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 508
>gi|238859643|ref|NP_001155023.1| retinoic acid receptor RXR-alpha-A [Danio rerio]
Length = 458
Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 276 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 334
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 335 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYA 394
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 395 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 450
>gi|75017953|sp|Q8T5C6.1|RXR_BIOGL RecName: Full=Retinoic acid receptor RXR; AltName: Full=RXR-like
protein; AltName: Full=Retinoid X receptor; Short=BgRXR
gi|19386469|gb|AAL86461.1| RXR-like protein [Biomphalaria glabrata]
Length = 436
Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 94/179 (52%), Gaps = 1/179 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F LP DQVILL W+EL + S+ + + L HV
Sbjct: 254 VEWAKRIPHFTELPLEDQVILLRAGWNELLIAGFSHRSI-MAKDGILLATGLHVHRSSAH 312
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A RVL ++ + R + +D E CL+AVVLF + +GL +VE L+++
Sbjct: 313 QAGVGTIFDRVLTELVAKMRDMKMDKTELGCLRAVVLFNPDAKGLTAVQEVEQLREKVYA 372
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYKN 181
L ++ ++ +P +P RF +LLL R+I ++H+FF K + + ++ L +M +N
Sbjct: 373 SLEEYTKSRYPEEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDQPIDTFLMEMLEN 431
>gi|449269065|gb|EMC79874.1| Retinoic acid receptor RXR-alpha, partial [Columba livia]
Length = 458
Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 276 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 334
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 335 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 394
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 395 SLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 450
>gi|400270857|gb|AFP75252.1| retinoid X receptor, partial [Tupaia belangeri]
Length = 431
Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 249 VEWAKRVPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 307
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 308 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 367
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 368 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 423
>gi|395844547|ref|XP_003795021.1| PREDICTED: retinoic acid receptor RXR-alpha [Otolemur garnettii]
Length = 487
Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 305 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 363
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 364 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 423
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 424 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 479
>gi|18859345|ref|NP_571228.1| retinoic acid receptor RXR-alpha-B [Danio rerio]
gi|52783417|sp|Q90415.1|RXRAB_DANRE RecName: Full=Retinoic acid receptor RXR-alpha-B; AltName:
Full=Nuclear receptor subfamily 2 group B member 1-B;
AltName: Full=Retinoid X receptor alpha-B
gi|1046289|gb|AAC59719.1| retinoid X receptor [Danio rerio]
Length = 379
Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L HV
Sbjct: 197 VEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSIAV-KDGILLATGLHVHRNSAH 255
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 256 TAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPSEVEALRERVYA 315
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 316 SLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 371
>gi|301770651|ref|XP_002920751.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Ailuropoda
melanoleuca]
Length = 516
Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 334 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 392
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 393 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 452
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 453 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 508
>gi|296191131|ref|XP_002743523.1| PREDICTED: retinoic acid receptor RXR-alpha [Callithrix jacchus]
Length = 603
Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 421 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 479
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 480 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 539
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 540 SLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 595
>gi|156556067|emb|CAO79103.1| PNR-like [Aedes aegypti]
gi|403182930|gb|EAT40209.2| AAEL008043-PA [Aedes aegypti]
Length = 422
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 102/185 (55%), Gaps = 19/185 (10%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLES---SPLFNASEHVA 57
+AVKWAK++PSF LP DQ +LLEESW+ELF++ A QW LP+ S ++ + +
Sbjct: 253 LAVKWAKSVPSFLQLPTADQKVLLEESWAELFVITAAQWGLPIDNGEFCSCCLSSPDFIT 312
Query: 58 AVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQ 117
P+ R L+ +Q+F L VD E ACLKA++LF+SE L S ++ LQ
Sbjct: 313 RNPS---------ARRLHAAIQQFTLARVDYREAACLKALILFRSENSNLYSSHEILLLQ 363
Query: 118 DQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARV-QHIFFAKTVANTSMEKLLC 176
DQ +L H R G LLL+ ++ + ++ Q + F KTV ++E+LL
Sbjct: 364 DQTISLL------HEKCGGVRLGHLLLLLPCIKSAANPKILQEMLFRKTVGEVAIERLLG 417
Query: 177 DMYKN 181
D+ K
Sbjct: 418 DLMKT 422
>gi|41282088|ref|NP_571292.2| retinoic acid receptor RXR-gamma-A [Danio rerio]
gi|52788288|sp|Q90416.2|RXRGA_DANRE RecName: Full=Retinoic acid receptor RXR-gamma-A; AltName:
Full=Nuclear receptor subfamily 2 group B member 3-A;
AltName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Retinoid X receptor alpha; AltName: Full=Retinoid X
receptor gamma-A
gi|37590367|gb|AAH59576.1| Retinoid x receptor, gamma a [Danio rerio]
Length = 441
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 259 VEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSV-TVKDGILLATGLHVHRSSAH 317
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + R + +D E CL+A+VLF + +GL + +VE L+++
Sbjct: 318 SAGVGSIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDAKGLSNPSEVEALREKVYA 377
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + ++P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 378 SLEGYTKHNYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 433
>gi|105872963|gb|ABF74729.1| retinoid X receptor-like protein [Daphnia magna]
gi|131665089|dbj|BAF49028.1| ultraspiracle [Daphnia magna]
gi|321453064|gb|EFX64341.1| hypothetical protein DAPPUDRAFT_219609 [Daphnia pulex]
Length = 400
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 97/182 (53%), Gaps = 13/182 (7%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLN------AIQWSLPLLESSPLFNASEHV 56
V+WAK++P F LP DQV+LL W+EL + ++ + L + S H
Sbjct: 219 VEWAKHIPHFTELPLDDQVVLLRAGWNELLIAAFSHRSVGVKDGIVLATGLVIHRNSAHQ 278
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V + RVL ++ + R + +D AE CL+A++LF + +GLK QVE L
Sbjct: 279 AGV-------GSIFDRVLTELVSKMREMKLDLAELGCLRAIILFNPDPKGLKSVSQVEAL 331
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+++ L ++ RT++ +P RF +LLL R+I ++H+FF K + +T +E L
Sbjct: 332 REKVYATLEEYTRTNYADEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIESFLL 391
Query: 177 DM 178
+M
Sbjct: 392 EM 393
>gi|357627327|gb|EHJ77063.1| putative Orphan nuclear receptor NR2E1 [Danaus plexippus]
Length = 390
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 106/196 (54%), Gaps = 25/196 (12%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M VKWAKN+P+F++L +D++ILLEESW +LF++ + Q+ P L+ L N ++H
Sbjct: 200 MNVKWAKNVPAFSSLSLQDRLILLEESWRDLFVIGSAQFLYP-LDLKVLVN-TKHTKV-- 255
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKS---------------ETR 105
S+ AD L + D E+ACL+A+VLFK+ E +
Sbjct: 256 ---DSKHIAD---FEKALIELTKMHPDNNEYACLRAIVLFKTNFNAVHTNSLPQSHIEIK 309
Query: 106 GLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKT 165
LKD V +LQD +Q +L +++ +P R +LL S RN+ S + +FF T
Sbjct: 310 KLKDLPAVASLQDHSQAVLNEYITRLYPGDTTRSNQLLQSLSAVRNVSSTTIVELFFRAT 369
Query: 166 VANTSMEKLLCDMYKN 181
+ + +E+++ DMY++
Sbjct: 370 IGDIPIERIISDMYRS 385
>gi|126297986|ref|XP_001372307.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Monodelphis
domestica]
Length = 489
Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 307 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 365
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 366 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 425
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 426 SLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 481
>gi|157117591|ref|XP_001658841.1| nuclear receptor [Aedes aegypti]
Length = 299
Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 102/185 (55%), Gaps = 19/185 (10%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLES---SPLFNASEHVA 57
+AVKWAK++PSF LP DQ +LLEESW+ELF++ A QW LP+ S ++ + +
Sbjct: 130 LAVKWAKSVPSFLQLPTADQKVLLEESWAELFVITAAQWGLPIDNGEFCSCCLSSPDFIT 189
Query: 58 AVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQ 117
P+ R L+ +Q+F L VD E ACLKA++LF+SE L S ++ LQ
Sbjct: 190 RNPSA---------RRLHAAIQQFTLARVDYREAACLKALILFRSENSNLYSSHEILLLQ 240
Query: 118 DQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARV-QHIFFAKTVANTSMEKLLC 176
DQ +L H R G LLL+ ++ + ++ Q + F KTV ++E+LL
Sbjct: 241 DQTISLL------HEKCGGVRLGHLLLLLPCIKSAANPKILQEMLFRKTVGEVAIERLLG 294
Query: 177 DMYKN 181
D+ K
Sbjct: 295 DLMKT 299
>gi|1583309|prf||2120366D retinoid X receptor:ISOTYPE=gamma
Length = 391
Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 209 VEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 267
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 268 TAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPSEVEALRERVYA 327
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 328 SLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 383
>gi|449478039|ref|XP_002196179.2| PREDICTED: retinoic acid receptor RXR-alpha [Taeniopygia guttata]
Length = 439
Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 257 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 315
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 316 SAGVGAIFDRVLTELVSKMRDMLMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 375
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 376 SLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 431
>gi|390432209|gb|AFL91696.1| retinoid X receptor isoform a [Azumapecten farreri]
Length = 446
Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 95/179 (53%), Gaps = 1/179 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V WA+ +P F LP DQVILL W+EL L+ A +++ L HV
Sbjct: 264 VAWARRIPHFTELPLEDQVILLRAGWNEL-LIAAFSHRSIVVKDGILLATGLHVHRSSAH 322
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A RVL ++ R R + +D E CL+A+VLF + +GL +VE L+++
Sbjct: 323 QAGVGTIFDRVLTELVARMREMKMDKTELGCLRAIVLFNPDAKGLSAIQEVEALREKVYA 382
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYKN 181
L ++ +T +P +P RF +LLL R+I ++H+FF K + +T ++ L +M ++
Sbjct: 383 SLEEYSKTRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLES 441
>gi|194225999|ref|XP_001917400.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Equus caballus]
Length = 587
Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 405 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 463
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 464 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 523
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 524 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 579
>gi|147902511|ref|NP_001088948.1| retinoid X receptor, gamma [Xenopus laevis]
gi|57032681|gb|AAH88915.1| LOC496325 protein [Xenopus laevis]
Length = 470
Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 96/176 (54%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L HV
Sbjct: 288 VEWAKRIPYFSDLPLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 346
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL ++ +VE L+++
Sbjct: 347 NAGVGSIFDRVLTELVSKMKDMDMDKSELGCLRAIVLFNPDAKGLSNAAEVEALREKVYA 406
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 407 TLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDIFLMEM 462
>gi|270002751|gb|EEZ99198.1| tailless [Tribolium castaneum]
Length = 406
Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 116/194 (59%), Gaps = 17/194 (8%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M V+W +++P+F LP DQ++LLEESW +LF+L A Q+ LPL++ S L A + P
Sbjct: 209 MNVQWVRSIPAFTCLPLSDQLLLLEESWLDLFVLGAAQF-LPLMDFSVLVEACGVLQQEP 267
Query: 61 NGKAS--QTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKS----------ETRGLK 108
+ + + + AD + + +F+L D EFACL+A+VLFK+ + +
Sbjct: 268 HRRDAFLKEVADFQETLKKISQFQL---DAHEFACLRAIVLFKTSFEKPSSSSNQEKTTT 324
Query: 109 DSLQVENLQDQAQVMLAQHVRTHHPAQPARFGR-LLLMTSQCRNIPSARVQHIFFAKTVA 167
+S ++ +QD AQ+ L +HV T +P QP RFG+ LLL++S R I ++ +FF K +
Sbjct: 325 ESAKISVIQDDAQMRLNKHVTTTYPKQPLRFGKILLLVSSTFRTISGRTIEDLFFKKVIR 384
Query: 168 NTSMEKLLCDMYKN 181
+T + ++ +MYKN
Sbjct: 385 DTPIVAIISNMYKN 398
>gi|410979449|ref|XP_003996096.1| PREDICTED: retinoic acid receptor RXR-alpha [Felis catus]
Length = 527
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 345 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 403
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 404 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 463
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 464 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 519
>gi|325930183|gb|ADZ45550.1| retinoid X receptor alpha [Taeniopygia guttata]
Length = 467
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 285 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 343
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 344 SAGVGAIFDRVLTELVSKMRDMLMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 403
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 404 SLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 459
>gi|86515358|ref|NP_001034502.1| tailless [Tribolium castaneum]
gi|8096685|gb|AAF71999.1|AF219117_1 tailless ortholog [Tribolium castaneum]
Length = 406
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 116/194 (59%), Gaps = 17/194 (8%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M V+W +++P+F LP DQ++LLEESW +LF+L A Q+ LPL++ S L A + P
Sbjct: 209 MNVQWVRSIPAFTCLPLSDQLLLLEESWLDLFVLGAAQF-LPLMDFSVLVEACGVLQQEP 267
Query: 61 NGKAS--QTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKS----------ETRGLK 108
+ + + + AD + + +F+L D EFACL+A+VLFK+ + +
Sbjct: 268 HRRDAFLKEVADFQETLKKISQFQL---DAHEFACLRAIVLFKTSFEKPSSSSNQEKTTT 324
Query: 109 DSLQVENLQDQAQVMLAQHVRTHHPAQPARFGR-LLLMTSQCRNIPSARVQHIFFAKTVA 167
+S ++ +QD AQ+ L +HV T +P QP RFG+ LLL++S R I ++ +FF K +
Sbjct: 325 ESAKISVIQDDAQMRLNKHVTTTYPKQPLRFGKILLLVSSTFRTISGRTIEDLFFKKVIR 384
Query: 168 NTSMEKLLCDMYKN 181
+T + ++ +MYKN
Sbjct: 385 DTPIVAIISNMYKN 398
>gi|1046295|gb|AAC59720.1| retinoid X receptor alpha [Danio rerio]
gi|1583308|prf||2120366C retinoid X receptor:ISOTYPE=alpha
Length = 441
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 259 VEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSV-TVKDGILLATGLHVHRSSAH 317
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + R + +D E CL+A+VLF + +GL + +VE L+++
Sbjct: 318 SAGVGSIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDAKGLSNPSEVEALREKVYA 377
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + ++P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 378 SLEGYTKHNYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 433
>gi|427777855|gb|JAA54379.1| Putative retinoid x receptor alpha a [Rhipicephalus pulchellus]
Length = 407
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 94/181 (51%), Gaps = 17/181 (9%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WA+ +P F LP D+ LL+ W+EL + S+ + L S H
Sbjct: 226 VQWARRIPHFEELPVEDRTALLKAGWNELLIAAFSHRSMNARDGIVLATGLVVQRHSAHS 285
Query: 57 AAVPNGKASQTAADV--RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVE 114
A V D+ RVL ++ + R + +D E CL+AVVLF + +GLK + +VE
Sbjct: 286 AGV---------GDIFDRVLAELVAKMRDMKMDKTELGCLRAVVLFNPDAKGLKSTERVE 336
Query: 115 NLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKL 174
L+++ L +H + HHP QP RFG+LLL R+I ++H+FF K + +T ++
Sbjct: 337 MLREKVYAALEEHCKRHHPDQPGRFGKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDVF 396
Query: 175 L 175
L
Sbjct: 397 L 397
>gi|427796277|gb|JAA63590.1| Putative retinoid x receptor alpha a, partial [Rhipicephalus
pulchellus]
Length = 420
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 94/181 (51%), Gaps = 17/181 (9%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WA+ +P F LP D+ LL+ W+EL + S+ + L S H
Sbjct: 239 VQWARRIPHFEELPVEDRTALLKAGWNELLIAAFSHRSMNARDGIVLATGLVVQRHSAHS 298
Query: 57 AAVPNGKASQTAADV--RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVE 114
A V D+ RVL ++ + R + +D E CL+AVVLF + +GLK + +VE
Sbjct: 299 AGV---------GDIFDRVLAELVAKMRDMKMDKTELGCLRAVVLFNPDAKGLKSTERVE 349
Query: 115 NLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKL 174
L+++ L +H + HHP QP RFG+LLL R+I ++H+FF K + +T ++
Sbjct: 350 MLREKVYAALEEHCKRHHPDQPGRFGKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDVF 409
Query: 175 L 175
L
Sbjct: 410 L 410
>gi|432875136|ref|XP_004072692.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like,
partial [Oryzias latipes]
Length = 330
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 103/192 (53%), Gaps = 15/192 (7%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 124 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 183
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL---QD 118
+ +R+ +++ + + VD AE++CLKA+VLF S + + + ++ +D
Sbjct: 184 DRVVAFMDHIRIFQEQVEKLKTLHVDSAEYSCLKAIVLFTSAMGAVASGVLLSDVDWSRD 243
Query: 119 QA--QVMLA---------QHVRTH-HPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTV 166
+ ML+ Q H P QP+RFG+LLL R + S+ ++ +FF + V
Sbjct: 244 AGVPKEMLSCQLPATYPPQRTPCHLDPHQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLV 303
Query: 167 ANTSMEKLLCDM 178
T +E L+ DM
Sbjct: 304 GKTPIETLIRDM 315
>gi|348504636|ref|XP_003439867.1| PREDICTED: retinoic acid receptor RXR-gamma-B-like isoform 2
[Oreochromis niloticus]
Length = 407
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 225 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSV-TVKDGILLATGLHVHRSSAH 283
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D E CL+A+VLF + +GL + +VE L+++
Sbjct: 284 SAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAIVLFNPDAKGLSNPSEVEGLREKVYA 343
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 344 SLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 399
>gi|359070758|ref|XP_002691733.2| PREDICTED: retinoic acid receptor RXR-alpha [Bos taurus]
Length = 756
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 574 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 632
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 633 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 692
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 693 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 748
>gi|126513141|gb|ABO15684.1| retinoid X receptor alpha, partial [Latris lineata]
Length = 274
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WA+ +P F+ LP DQVILL W+EL + + S+ + + L HV
Sbjct: 99 VEWAERIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAI-KDGILLATGLHVHRNSAH 157
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 158 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYA 217
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF + + +T ++ L +M
Sbjct: 218 SLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIGDTPIDTFLMEM 273
>gi|427778501|gb|JAA54702.1| Putative retinoid x receptor alpha a [Rhipicephalus pulchellus]
Length = 448
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 94/181 (51%), Gaps = 17/181 (9%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WA+ +P F LP D+ LL+ W+EL + S+ + L S H
Sbjct: 267 VQWARRIPHFEELPVEDRTALLKAGWNELLIAAFSHRSMNARDGIVLATGLVVQRHSAHS 326
Query: 57 AAVPNGKASQTAADV--RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVE 114
A V D+ RVL ++ + R + +D E CL+AVVLF + +GLK + +VE
Sbjct: 327 AGV---------GDIFDRVLAELVAKMRDMKMDKTELGCLRAVVLFNPDAKGLKSTERVE 377
Query: 115 NLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKL 174
L+++ L +H + HHP QP RFG+LLL R+I ++H+FF K + +T ++
Sbjct: 378 MLREKVYAALEEHCKRHHPDQPGRFGKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDVF 437
Query: 175 L 175
L
Sbjct: 438 L 438
>gi|21310111|gb|AAM46151.1|AF378829_1 nuclear hormone receptor RXR [Branchiostoma floridae]
Length = 522
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + S+ + + L + HV
Sbjct: 309 VEWAKRIPHFSDLPIDDQVILLRAGWNELLIAAFSHRSIDVKDGI-LLASGLHVHRSSAH 367
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A RVL ++ + R + +D E CL+A+VLF + +GL D VE+L+++
Sbjct: 368 QAGVGTIFDRVLTELVAKMRDMKMDKTELGCLRAIVLFNPDAKGLTDPSLVESLREKVYA 427
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 428 SLEEYCKQQYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 483
>gi|348504634|ref|XP_003439866.1| PREDICTED: retinoic acid receptor RXR-gamma-B-like isoform 1
[Oreochromis niloticus]
Length = 453
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 271 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSV-TVKDGILLATGLHVHRSSAH 329
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D E CL+A+VLF + +GL + +VE L+++
Sbjct: 330 SAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAIVLFNPDAKGLSNPSEVEGLREKVYA 389
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 390 SLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 445
>gi|409194686|gb|AFV31633.1| retinoic X receptor gamma, partial [Acanthopagrus schlegelii]
Length = 453
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 271 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSV-TVKDGILLATGLHVHRSSAH 329
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D E CL+A+VLF + +GL + +VE L+++
Sbjct: 330 SAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAIVLFNPDAKGLSNPPEVEGLREKVYA 389
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 390 SLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 445
>gi|410921388|ref|XP_003974165.1| PREDICTED: retinoic acid receptor RXR-gamma-B-like [Takifugu
rubripes]
Length = 462
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 280 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSV-TVKDGILLATGLHVHRSSAH 338
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D E CL+A+VLF + +GL + +VE L+++
Sbjct: 339 SAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAIVLFNPDAKGLSNPQEVEGLREKVYA 398
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 399 SLESYTKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 454
>gi|351709883|gb|EHB12802.1| COUP transcription factor 1 [Heterocephalus glaber]
Length = 251
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 96/186 (51%), Gaps = 22/186 (11%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL HVA
Sbjct: 62 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPL-----------HVAG--G 108
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDP---------AEFACLKAVVLFKSETRGLKDSLQ 112
G+ S+ + L V + E +C V+ GL D+
Sbjct: 109 GEGSKRTWERGFLLCVARSLHEFSPQKETHRESQKGGEQSCSDWVLGLGHYACGLSDAAH 168
Query: 113 VENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSME 172
+E+LQ+++Q L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E
Sbjct: 169 IESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIE 228
Query: 173 KLLCDM 178
L+ DM
Sbjct: 229 TLIRDM 234
>gi|354801981|gb|AER39752.1| retinoid X receptor [Sepia officinalis]
Length = 292
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 95/179 (53%), Gaps = 1/179 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F L DQV LL W+EL + S+P+ + L HV
Sbjct: 110 VEWAKRIPHFTKLSLDDQVTLLRAGWNELLIAGFSHRSIPV-KDGILLATGIHVHRSSAH 168
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A RVL+ ++ + R + +D +E CL+A+VLF + +GL + +VE+L+++
Sbjct: 169 HAGVDTIFDRVLSELVAKMREMKMDKSELGCLRAIVLFNPDAKGLVSTQEVESLREKVYA 228
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYKN 181
L ++ + +P + RF +LLL R+I ++H+FF K + +T ++ L +M +N
Sbjct: 229 TLEEYCKCQYPEETGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEN 287
>gi|390432213|gb|AFL91698.1| retinoid X receptor isoform c [Azumapecten farreri]
Length = 466
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 93/176 (52%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V WA+ +P F LP DQVILL W+EL L+ A +++ L HV
Sbjct: 284 VAWARRIPHFTELPLEDQVILLRAGWNEL-LIAAFSHRSIVVKDGILLATGLHVHRSSAH 342
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A RVL ++ + R + +D E CL+A+VLF + +GL +VE L+++
Sbjct: 343 QAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVLFNPDAKGLSAIQEVEALREKVYA 402
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ +T +P +P RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 403 SLEEYSKTRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 458
>gi|390432211|gb|AFL91697.1| retinoid X receptor isoform b [Azumapecten farreri]
Length = 450
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 95/179 (53%), Gaps = 1/179 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V WA+ +P F LP DQVILL W+EL L+ A +++ L HV
Sbjct: 268 VAWARRIPHFTELPLEDQVILLRAGWNEL-LIAAFSHRSIVVKDGILLATGLHVHRSSAH 326
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A RVL ++ + R + +D E CL+A+VLF + +GL +VE L+++
Sbjct: 327 QAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVLFNPDAKGLSAIQEVEALREKVYA 386
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYKN 181
L ++ +T +P +P RF +LLL R+I ++H+FF K + +T ++ L +M ++
Sbjct: 387 SLEEYSKTRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLES 445
>gi|390432215|gb|AFL91699.1| retinoid X receptor isoform d [Azumapecten farreri]
Length = 470
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 95/179 (53%), Gaps = 1/179 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V WA+ +P F LP DQVILL W+EL L+ A +++ L HV
Sbjct: 288 VAWARRIPHFTELPLEDQVILLRAGWNEL-LIAAFSHRSIVVKDGILLATGLHVHRSSAH 346
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A RVL ++ + R + +D E CL+A+VLF + +GL +VE L+++
Sbjct: 347 QAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVLFNPDAKGLSAIQEVEALREKVYA 406
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYKN 181
L ++ +T +P +P RF +LLL R+I ++H+FF K + +T ++ L +M ++
Sbjct: 407 SLEEYSKTRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLES 465
>gi|84028531|gb|ABC49724.1| retinoid X receptor 1 [Petromyzon marinus]
Length = 476
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 93/176 (52%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+W+K +P F+ LP DQVILL W+EL + + S+ + + L HV
Sbjct: 296 VEWSKRVPHFSELPLDDQVILLRAGWNELLIASFSHRSIGVSDGI-LLATGLHVHRSSAH 354
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + R + +D AE CL+A VLF + +GL VE L+++
Sbjct: 355 SAGVGSIFDRVLTELVSKMRDMNMDKAELGCLRATVLFNPDAKGLSSPCDVEALREKVYA 414
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K +++T ++ L +M
Sbjct: 415 SLESYCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLISDTPIDTFLMEM 470
>gi|152149581|pdb|2GL8|A Chain A, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
gi|152149582|pdb|2GL8|B Chain B, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
gi|152149583|pdb|2GL8|C Chain C, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
gi|152149584|pdb|2GL8|D Chain D, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
Length = 241
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 95/179 (53%), Gaps = 1/179 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 59 VEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 117
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL + +VE L+++
Sbjct: 118 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYA 177
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYKN 181
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M +
Sbjct: 178 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLET 236
>gi|355717631|gb|AES06001.1| retinoid X receptor, gamma [Mustela putorius furo]
Length = 249
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 95/179 (53%), Gaps = 1/179 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 67 VEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 125
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL + +VE L+++
Sbjct: 126 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYA 185
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYKN 181
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M +
Sbjct: 186 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLET 244
>gi|84028535|gb|ABC49726.1| retinoid X receptor 3 [Petromyzon marinus]
Length = 462
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 93/176 (52%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+W+K +P F+ LP DQVILL W+EL + + S+ + + L HV
Sbjct: 282 VEWSKRVPHFSELPLDDQVILLRAGWNELLIASFSHRSIGVSDGI-LLATGLHVHRSSAH 340
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + R + +D AE CL+A VLF + +GL VE L+++
Sbjct: 341 SAGVGSIFDRVLTELVSKMRDMNMDKAELGCLRATVLFNPDAKGLSSPCDVEALREKVYA 400
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K +++T ++ L +M
Sbjct: 401 SLESYCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLISDTPIDTFLMEM 456
>gi|16565495|gb|AAL26246.1| retinoid X receptor [Petromyzon marinus]
Length = 237
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 1/167 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+W+K +P F+ LP DQVILL W+EL + + S+ + L HV
Sbjct: 72 VEWSKRVPHFSELPLDDQVILLRAGWNELLIASFSHRSIGV-SDGILLTTGLHVHRSSAH 130
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + R + +D AE CL+A+VLF + +GL VE LQ++
Sbjct: 131 SAGVGSIFDRVLTELVSKMRDMNMDKAELGCLRAIVLFNPDAKGLSSPSDVEALQEKVYA 190
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANT 169
L + + +P QP RF +LLL R+I ++H+FF K + +T
Sbjct: 191 SLESYCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDT 237
>gi|432094623|gb|ELK26129.1| Retinoic acid receptor RXR-beta [Myotis davidii]
Length = 574
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + + L HV
Sbjct: 392 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI-LLATGLHVHRNSAH 450
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 451 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYA 510
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 511 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 566
>gi|242008309|ref|XP_002424949.1| retinoid X receptor, putative [Pediculus humanus corporis]
gi|212508563|gb|EEB12211.1| retinoid X receptor, putative [Pediculus humanus corporis]
Length = 420
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 93/179 (51%), Gaps = 7/179 (3%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK++P F++LP DQV+LL W+EL + S+ + + L V
Sbjct: 239 VEWAKHIPHFSSLPIEDQVLLLRAGWNELLIAAFSHRSVEVRDGIVLGAG----ITVHRN 294
Query: 63 KASQTAADV---RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
A Q RVL ++ + R + +D E CL++++LF E RGLK +VE L+++
Sbjct: 295 SAHQAGVGTIFDRVLTELVAKMRDMNMDRTELGCLRSIILFNPEVRGLKSGQEVELLREK 354
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ R P +P RF +LLL R+I ++H+FF + + + ++ L DM
Sbjct: 355 VYAALEEYTRVTRPEEPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIGDIPIDTFLMDM 413
>gi|158302672|dbj|BAF85823.1| ultraspiracle [Liocheles australasiae]
Length = 410
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK++P F LP DQ++LL+ W+EL + S+ + + L + +G
Sbjct: 230 VEWAKHVPHFTDLPLDDQMVLLKAGWNELLIAAFSHRSIDVKDGIVLASGLIVHRNSAHG 289
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
T D RVL ++ + R + +D E CL+A+VLF E +GLK VENL+++
Sbjct: 290 AGVGTIFD-RVLTELVAKMREMNMDKTELGCLRAIVLFNPEAKGLKSVTHVENLRERVYS 348
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + R ++ QP RF +LLL R+I ++H+FF K + +T ++ L M
Sbjct: 349 ALEDYCRQNYFDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDNFLMSM 404
>gi|334323757|ref|XP_001377435.2| PREDICTED: retinoic acid receptor RXR-beta-like [Monodelphis
domestica]
Length = 597
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + + L HV
Sbjct: 415 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSISVRDGI-LLATGLHVHRNSAH 473
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 474 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGEVEILREKVYA 533
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 534 SLESYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 589
>gi|444730607|gb|ELW70985.1| Retinoic acid receptor RXR-gamma [Tupaia chinensis]
Length = 425
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 243 VEWAKRIPHFSGLTLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 301
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL + +VE L+++
Sbjct: 302 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYA 361
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 362 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 417
>gi|410986573|ref|XP_003999584.1| PREDICTED: retinoic acid receptor RXR-gamma [Felis catus]
Length = 463
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 281 VEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 339
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D AE CL+A+VLF + +GL + +VE L+++
Sbjct: 340 SAGVGSIFDRVLTELVSKMKDMQMDKAELGCLRAIVLFNPDAKGLSNPSEVETLREKVYA 399
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 400 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
>gi|432856175|ref|XP_004068390.1| PREDICTED: retinoic acid receptor RXR-gamma-B [Oryzias latipes]
Length = 455
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 273 VEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSV-TVKDGILLATGLHVHRSSAH 331
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D E CL+A+VLF + +GL + +VE L+++
Sbjct: 332 SAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAIVLFNPDAKGLSNPSEVEALREKVYA 391
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 392 SLEAYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 447
>gi|154183749|gb|ABS70715.1| retinoid X receptor a isoform [Nucella lapillus]
Length = 441
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 94/179 (52%), Gaps = 1/179 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F LP DQVILL W+EL + S + + L HV
Sbjct: 257 VEWAKRIPHFIELPLEDQVILLRAGWNELLIAGFSHRSTQVTDGI-LLATGLHVHRSSAH 315
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A RVL ++ + R + +D E CL+A+VLF + +GL+ +VE L+++
Sbjct: 316 QAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVLFNPDAKGLQAVQEVEQLREKVYA 375
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYKN 181
L ++ + +P +P RF +LLL R+I ++H+FF K + +T ++ L +M ++
Sbjct: 376 SLEEYCKQRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLES 434
>gi|154183751|gb|ABS70716.1| retinoid X receptor b isoform [Nucella lapillus]
Length = 446
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 94/179 (52%), Gaps = 1/179 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F LP DQVILL W+EL + S + + L HV
Sbjct: 262 VEWAKRIPHFIELPLEDQVILLRAGWNELLIAGFSHRSTQVTDGI-LLATGLHVHRSSAH 320
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A RVL ++ + R + +D E CL+A+VLF + +GL+ +VE L+++
Sbjct: 321 QAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVLFNPDAKGLQAVQEVEQLREKVYA 380
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYKN 181
L ++ + +P +P RF +LLL R+I ++H+FF K + +T ++ L +M ++
Sbjct: 381 SLEEYCKQRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLES 439
>gi|66864094|dbj|BAD99298.1| ultraspiracle [Leptinotarsa decemlineata]
Length = 384
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 101/184 (54%), Gaps = 11/184 (5%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F +LP DQV+LL W+EL + + S+ E L +
Sbjct: 203 VEWAKLIPHFTSLPVSDQVLLLRAGWNELLIASFSHRSMQTQEGIIL------ATGLTIN 256
Query: 63 KASQTAADV-----RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQ 117
K++ A V RVL+ ++ + + + +D E CL+A++L+ + RGL+ + +VE L+
Sbjct: 257 KSTAQAVGVGNIYDRVLSELVNKMKEMRMDKTELGCLRAIILYNPDVRGLQSTQEVEILR 316
Query: 118 DQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCD 177
++ L ++ RT HP +P RF +LLL R+I ++H+FF + + + +++ + +
Sbjct: 317 EKIYENLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIGDVTIDTFITE 376
Query: 178 MYKN 181
M +N
Sbjct: 377 MLEN 380
>gi|156551053|ref|XP_001605819.1| PREDICTED: retinoic acid receptor RXR isoform 1 [Nasonia
vitripennis]
Length = 414
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 93/182 (51%), Gaps = 13/182 (7%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLN------AIQWSLPLLESSPLFNASEHV 56
V+WAK LP F +LP DQ LL W+EL + I+ + L+ L S
Sbjct: 233 VEWAKRLPQFTSLPLEDQARLLRAGWNELQIAAFSHRSIDIEDGIILMTGFTLHKNSAQQ 292
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V A RVL ++ + + + +D E CL+A++LF E RGLK +V+ L
Sbjct: 293 AGV-------GAIFERVLTELVHKMKSMKMDKTELGCLRAIILFNPEVRGLKAHQEVDML 345
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+++ V L ++ R H P +P RF +LLL R+I +H+FF + + + + +LL
Sbjct: 346 REKVYVALDEYTRLHRPDEPGRFAKLLLRLPALRSIGLKCTEHLFFFRLLGDLPLNELLT 405
Query: 177 DM 178
DM
Sbjct: 406 DM 407
>gi|345489439|ref|XP_003426139.1| PREDICTED: retinoic acid receptor RXR [Nasonia vitripennis]
Length = 400
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 93/182 (51%), Gaps = 13/182 (7%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLN------AIQWSLPLLESSPLFNASEHV 56
V+WAK LP F +LP DQ LL W+EL + I+ + L+ L S
Sbjct: 219 VEWAKRLPQFTSLPLEDQARLLRAGWNELQIAAFSHRSIDIEDGIILMTGFTLHKNSAQQ 278
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V A RVL ++ + + + +D E CL+A++LF E RGLK +V+ L
Sbjct: 279 AGV-------GAIFERVLTELVHKMKSMKMDKTELGCLRAIILFNPEVRGLKAHQEVDML 331
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+++ V L ++ R H P +P RF +LLL R+I +H+FF + + + + +LL
Sbjct: 332 REKVYVALDEYTRLHRPDEPGRFAKLLLRLPALRSIGLKCTEHLFFFRLLGDLPLNELLT 391
Query: 177 DM 178
DM
Sbjct: 392 DM 393
>gi|358251510|gb|AEU04704.1| retinoid X receptor beta [Lateolabrax japonicus]
Length = 444
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 101/187 (54%), Gaps = 11/187 (5%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPL----LESSPLFNASEHVAA 58
V+WAK +P F+ LP DQVILL W+EL + + S+ L L +S L S H A
Sbjct: 250 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIALKDGVLLASELQRDSAHSAG 309
Query: 59 VPN--GKASQTAADV-----RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSL 111
V + S +A+V RVL ++ + R + +D E CL+A+ LF + +GL ++
Sbjct: 310 VGAIFDRESVQSAEVGAIFDRVLTELVNKMRDMQMDKTELGCLRAIALFNPDAKGLSNTS 369
Query: 112 QVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSM 171
+VE L+++ L + + +P Q RF +LLL R+I ++H+FF K + +T +
Sbjct: 370 EVELLREKVYASLEAYCKQRYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 429
Query: 172 EKLLCDM 178
+ L +M
Sbjct: 430 DTFLMEM 436
>gi|307196423|gb|EFN78012.1| Photoreceptor-specific nuclear receptor [Harpegnathos saltator]
Length = 394
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 99/178 (55%), Gaps = 13/178 (7%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
AV+WA+++ SF LP+RDQ ILLEESWSELF+L A QW+ + E+S + +P
Sbjct: 223 FAVRWARSIHSFLQLPYRDQTILLEESWSELFVLTAAQWNFSVDETSLV------PVDLP 276
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+ R L +L + + VD +E+ACLKA+VLFK+E+RGL + +V LQ+Q
Sbjct: 277 PERREILVDKARRLRELLAKCVALRVDHSEYACLKAIVLFKAESRGLCEPGRVSALQEQT 336
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
+ + R GRLLL+ R + + + F TV S+E+LL DM
Sbjct: 337 VAVFCER-------DARRVGRLLLLLPPARALCRVTLHELLFKPTVGEVSVERLLGDM 387
>gi|198285543|gb|ACH85310.1| retinoid x receptor beta a [Salmo salar]
Length = 373
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 102/187 (54%), Gaps = 11/187 (5%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA-------SEH 55
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L N S
Sbjct: 179 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGVLLANELHRDNAHSAG 238
Query: 56 VAAVPNGKASQTAADV----RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSL 111
VAA+ + ++ Q+A RVL ++ + R + +D E CL+A+VLF + +GL ++
Sbjct: 239 VAAIFDRESVQSAEVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDAKGLSNTG 298
Query: 112 QVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSM 171
+VE L+++ L + + +P Q RF +LLL R+I ++H+FF K + +T +
Sbjct: 299 EVELLREKVYASLEAYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 358
Query: 172 EKLLCDM 178
+ L +M
Sbjct: 359 DTFLMEM 365
>gi|228480295|ref|NP_001153203.1| retinoic acid receptor RXR-gamma isoform 2 [Mus musculus]
gi|386369|gb|AAB27245.1| retinoid-X receptor-gamma isoform 2 [Mus sp.]
Length = 340
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 158 VEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 216
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL + +VE L+++
Sbjct: 217 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYA 276
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 277 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDSFLMEM 332
>gi|216409720|dbj|BAH02297.1| retinoid X receptor-gamma [Homo sapiens]
Length = 463
Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 281 VEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 339
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL + +VE L+++
Sbjct: 340 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYA 399
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 400 TLGAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
>gi|291397512|ref|XP_002715914.1| PREDICTED: retinoid X receptor gamma [Oryctolagus cuniculus]
gi|262263191|dbj|BAI48098.1| retinoid X receptor, gamma [Sus scrofa]
Length = 340
Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 158 VEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 216
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL + +VE L+++
Sbjct: 217 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYA 276
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 277 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 332
>gi|354487523|ref|XP_003505922.1| PREDICTED: retinoic acid receptor RXR-beta-like [Cricetulus
griseus]
Length = 546
Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + + L HV
Sbjct: 364 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI-LLATGLHVHRNSAH 422
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 423 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGEVEVLREKVYA 482
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 483 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 538
>gi|375151577|ref|NP_001243499.1| retinoic acid receptor RXR-gamma isoform c [Homo sapiens]
gi|375151581|ref|NP_001243500.1| retinoic acid receptor RXR-gamma isoform c [Homo sapiens]
gi|410034069|ref|XP_003949681.1| PREDICTED: retinoic acid receptor RXR-gamma [Pan troglodytes]
gi|410034071|ref|XP_003949682.1| PREDICTED: retinoic acid receptor RXR-gamma [Pan troglodytes]
Length = 340
Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 158 VEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 216
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL + +VE L+++
Sbjct: 217 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYA 276
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 277 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 332
>gi|49259353|pdb|1UHL|A Chain A, Crystal Structure Of The Lxralfa-Rxrbeta Lbd Heterodimer
Length = 236
Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 94/178 (52%), Gaps = 1/178 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + L HV
Sbjct: 54 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDV-RDGILLATGLHVHRNSAH 112
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 113 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYA 172
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M +
Sbjct: 173 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLE 230
>gi|51873224|gb|AAU12572.1| retinoid X receptor [Reishia clavigera]
Length = 431
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 91/179 (50%), Gaps = 1/179 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V WAK +P F LP DQVILL W+EL L+ + L HV
Sbjct: 248 VDWAKRIPHFVELPLEDQVILLRAGWNEL-LIGGFSHRSTQVTDGILLATGLHVHRSSAH 306
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A RVL ++ + R + +D E CL+A+VLF + +GL+ +VE L+++
Sbjct: 307 QAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVLFNPDAKGLQSVQEVEQLREKVYA 366
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYKN 181
L ++ + +P +P RF +LLL R+I ++H+FF K + T ++ L +M ++
Sbjct: 367 SLEEYCKQRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGQTPIDTFLMEMLES 425
>gi|322792862|gb|EFZ16695.1| hypothetical protein SINV_10759 [Solenopsis invicta]
Length = 397
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 99/178 (55%), Gaps = 13/178 (7%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
AV+WA+++ SF LP+RDQ ILLEESWSELF+L A QW+ P+ E++ + +P
Sbjct: 226 FAVRWARSIHSFLQLPYRDQTILLEESWSELFVLTAAQWNFPVDETTLV------PVDLP 279
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+ R L +L + + VD +E+ACLKA+VLFK+E+R L + +V LQ+Q
Sbjct: 280 IERREVLLDKARRLRELLAKCAALRVDHSEYACLKAIVLFKAESRNLCEPGRVSALQEQT 339
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
+ + R GRLLL+ R + + + F TV S+E+LL DM
Sbjct: 340 VAVFCER-------DARRVGRLLLLLPPARALCRTTLHELLFKPTVGEVSVERLLGDM 390
>gi|410903442|ref|XP_003965202.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like [Takifugu
rubripes]
Length = 447
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 265 VEWAKRIPHFSELALDDQVILLRAGWNELLIASFSHRSIGIKDGI-LLATGLHVHRNSAH 323
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 324 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPSEVEALREKVYA 383
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 384 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 439
>gi|40886675|gb|AAR96256.1| retinoid X receptor gamma [Sus scrofa]
Length = 431
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 249 VEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 307
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL + +VE L+++
Sbjct: 308 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYA 367
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 368 TLEXYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 423
>gi|194332487|ref|NP_001123685.1| retinoic acid receptor RXR-gamma [Sus scrofa]
gi|112820329|gb|ABI24018.1| retinoid X receptor gamma [Sus scrofa]
Length = 463
Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 93/176 (52%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 281 VEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 339
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + +D +E CL+AVVLF + +GL + +VE L+++
Sbjct: 340 SAGVGSIFDRVLTELVSKMKDTQMDKSELGCLRAVVLFNPDAKGLSNPSEVETLREKVYA 399
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 400 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
>gi|66347234|emb|CAI95622.1| retinoid X receptor, beta [Homo sapiens]
Length = 482
Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + + L HV
Sbjct: 300 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI-LLATGLHVHRNSAH 358
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 359 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYA 418
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 419 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 474
>gi|296229938|ref|XP_002760488.1| PREDICTED: retinoic acid receptor RXR-gamma [Callithrix jacchus]
Length = 463
Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 281 VEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 339
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL + +VE L+++
Sbjct: 340 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYA 399
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 400 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
>gi|197941308|gb|ACH78358.1| retinoid X receptor gamma [Sebastiscus marmoratus]
Length = 451
Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 93/176 (52%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQV LL W+EL + + S+ ++ L HV
Sbjct: 269 VEWAKRIPHFSELPLDDQVFLLRAGWNELLIASFSHRSV-TVKDGILLATGLHVHRNSAH 327
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D E CL+A+VLF + +GL + +VE L+++
Sbjct: 328 SAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAIVLFNPDAKGLSNPPEVEGLREKVYA 387
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 388 SLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 443
>gi|72148318|ref|XP_795547.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Strongylocentrotus purpuratus]
Length = 483
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 99/179 (55%), Gaps = 5/179 (2%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWS----LPLLESSPLFNASEHVA 57
A++ +K++ F AL DQ LL+E W+ELFLL+A W LL S L
Sbjct: 302 ALRTSKSVQPFRALDPWDQNSLLQECWAELFLLHAAYWPPADFCALLSHSHLRMDDAKTE 361
Query: 58 AVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRG-LKDSLQVENL 116
G + + V + + R R + + EFA L+A+VLFK +T+G L++ +VE
Sbjct: 362 TDSKGATRRKSEVVDDIQEITVRLRTLNLSTHEFAFLEAIVLFKPDTKGTLREKSKVEFF 421
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLL 175
+DQ+QV+LAQ+ HP PARFG+LLL + + + ++ +FF +T+ +EK+L
Sbjct: 422 RDQSQVVLAQYENIVHPESPARFGKLLLTMPALKRVGTENLEELFFRRTLGKVQIEKIL 480
>gi|444729063|gb|ELW69492.1| Retinoic acid receptor RXR-beta [Tupaia chinensis]
Length = 408
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + + L HV
Sbjct: 226 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI-LLATGLHVHRNSAH 284
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 285 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYA 344
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 345 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 400
>gi|351696221|gb|EHA99139.1| Retinoic acid receptor RXR-gamma [Heterocephalus glaber]
Length = 463
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 281 VEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 339
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL + +VE L+++
Sbjct: 340 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYA 399
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 400 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
>gi|323461809|dbj|BAJ76723.1| retinoid X receptor isoform 2 [Reishia clavigera]
Length = 447
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 91/179 (50%), Gaps = 1/179 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V WAK +P F LP DQVILL W+EL L+ + L HV
Sbjct: 264 VDWAKRIPHFVELPLEDQVILLRAGWNEL-LIGGFSHRSTQVTDGILLATGLHVHRSSAH 322
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A RVL ++ + R + +D E CL+A+VLF + +GL+ +VE L+++
Sbjct: 323 QAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVLFNPDAKGLQSVQEVEQLREKVYA 382
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYKN 181
L ++ + +P +P RF +LLL R+I ++H+FF K + T ++ L +M ++
Sbjct: 383 SLEEYCKQRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGQTPIDTFLMEMLES 441
>gi|323461807|dbj|BAJ76722.1| retinoid X receptor isoform 1 [Reishia clavigera]
Length = 442
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 91/179 (50%), Gaps = 1/179 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V WAK +P F LP DQVILL W+EL L+ + L HV
Sbjct: 259 VDWAKRIPHFVELPLEDQVILLRAGWNEL-LIGGFSHRSTQVTDGILLATGLHVHRSSAH 317
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A RVL ++ + R + +D E CL+A+VLF + +GL+ +VE L+++
Sbjct: 318 QAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVLFNPDAKGLQSVQEVEQLREKVYA 377
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYKN 181
L ++ + +P +P RF +LLL R+I ++H+FF K + T ++ L +M ++
Sbjct: 378 SLEEYCKQRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGQTPIDTFLMEMLES 436
>gi|332219399|ref|XP_003258843.1| PREDICTED: retinoic acid receptor RXR-gamma [Nomascus leucogenys]
Length = 463
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 281 VEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 339
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL + +VE L+++
Sbjct: 340 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYA 399
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 400 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
>gi|146186460|gb|ABQ09282.1| retinoid X receptor beta 1 [Oryzias latipes]
Length = 194
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 92/173 (53%), Gaps = 1/173 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L HV
Sbjct: 22 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSISV-KDGILLATGLHVHRNSAH 80
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL +S +VE L+++
Sbjct: 81 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIILFNPDAKGLSNSSEVELLRERVYA 140
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLL 175
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L
Sbjct: 141 SLETYCKHKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFL 193
>gi|354486852|ref|XP_003505591.1| PREDICTED: LOW QUALITY PROTEIN: retinoic acid receptor
RXR-gamma-like [Cricetulus griseus]
Length = 463
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 281 VEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 339
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL + +VE L+++
Sbjct: 340 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYA 399
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 400 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
>gi|167016572|sp|Q0GFF6.2|RXRG_PIG RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
Length = 463
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 281 VEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 339
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL + +VE L+++
Sbjct: 340 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYA 399
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 400 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
>gi|46237552|emb|CAE83933.1| retinoid X receptor beta [Rattus norvegicus]
Length = 451
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + + L HV
Sbjct: 269 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI-LLATGLHVHRNSAH 327
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 328 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGEVEILREKVYA 387
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 388 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 443
>gi|84028533|gb|ABC49725.1| retinoid X receptor 2 [Petromyzon marinus]
Length = 512
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 92/176 (52%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+W+K +P F+ LP DQVILL W+EL + + S+ + + L HV
Sbjct: 295 VEWSKRVPHFSELPLDDQVILLRAGWNELHIASFSHRSIGVSDGI-LLATGLHVHRSSAH 353
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + R + +D AE CL+A+VLF + +GL VE +++
Sbjct: 354 SAGVGSIFDRVLTELVSKMRDMNMDKAELGCLRAIVLFNPDAKGLSSPSGVEAFREKVYA 413
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 414 SLESYCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 469
>gi|206603|gb|AAA42025.1| nuclear receptor co-regulator 1 [Rattus sp.]
Length = 451
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + + L HV
Sbjct: 269 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI-LLATGLHVHRNSAH 327
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 328 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGEVEILREKVYA 387
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 388 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 443
>gi|197101785|ref|NP_001124824.1| retinoic acid receptor RXR-gamma [Pongo abelii]
gi|402858038|ref|XP_003893537.1| PREDICTED: retinoic acid receptor RXR-gamma [Papio anubis]
gi|75062013|sp|Q5REL6.1|RXRG_PONAB RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|55726030|emb|CAH89791.1| hypothetical protein [Pongo abelii]
Length = 463
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 281 VEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 339
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL + +VE L+++
Sbjct: 340 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYA 399
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 400 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
>gi|5902068|ref|NP_008848.1| retinoic acid receptor RXR-gamma isoform a [Homo sapiens]
gi|114561087|ref|XP_513962.2| PREDICTED: retinoic acid receptor RXR-gamma isoform 2 [Pan
troglodytes]
gi|397508368|ref|XP_003824630.1| PREDICTED: retinoic acid receptor RXR-gamma [Pan paniscus]
gi|1350913|sp|P48443.1|RXRG_HUMAN RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|1053069|gb|AAA80681.1| retinoid X receptor-gamma [Homo sapiens]
gi|15082315|gb|AAH12063.1| Retinoid X receptor, gamma [Homo sapiens]
gi|48145527|emb|CAG32986.1| RXRG [Homo sapiens]
gi|119611151|gb|EAW90745.1| retinoid X receptor, gamma [Homo sapiens]
gi|190689913|gb|ACE86731.1| retinoid X receptor, gamma protein [synthetic construct]
gi|190691285|gb|ACE87417.1| retinoid X receptor, gamma protein [synthetic construct]
gi|261858858|dbj|BAI45951.1| retinoid X receptor, gamma [synthetic construct]
gi|325495501|gb|ADZ17356.1| retinoid X nuclear receptor gamma variant 1 [Homo sapiens]
gi|326205168|dbj|BAJ83970.1| retinoic acid receptor RXR-gamma [Homo sapiens]
Length = 463
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 281 VEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 339
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL + +VE L+++
Sbjct: 340 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYA 399
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 400 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
>gi|327315360|ref|NP_001192145.1| retinoic acid receptor RXR-beta isoform 4 [Mus musculus]
gi|54024|emb|CAA46963.1| retinoid X receptor-beta [Mus musculus]
gi|987670|dbj|BAA04859.1| RXR-beta2 isoform [Mus musculus]
Length = 410
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + + L HV
Sbjct: 228 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI-LLATGLHVHRNSAH 286
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 287 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGEVEILREKVYA 346
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 347 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 402
>gi|426332559|ref|XP_004027871.1| PREDICTED: retinoic acid receptor RXR-gamma [Gorilla gorilla
gorilla]
Length = 463
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 281 VEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 339
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL + +VE L+++
Sbjct: 340 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYA 399
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 400 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
>gi|395825135|ref|XP_003785797.1| PREDICTED: retinoic acid receptor RXR-gamma [Otolemur garnettii]
Length = 463
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 281 VEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 339
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL + +VE L+++
Sbjct: 340 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYA 399
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 400 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
>gi|344236823|gb|EGV92926.1| Retinoic acid receptor RXR-gamma [Cricetulus griseus]
Length = 414
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 232 VEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 290
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL + +VE L+++
Sbjct: 291 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYA 350
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 351 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 406
>gi|74006096|ref|XP_536146.2| PREDICTED: retinoic acid receptor RXR-gamma isoform 1 [Canis lupus
familiaris]
Length = 463
Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 281 VEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 339
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL + +VE L+++
Sbjct: 340 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYA 399
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 400 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
>gi|6677829|ref|NP_033133.1| retinoic acid receptor RXR-gamma isoform 1 [Mus musculus]
gi|1350914|sp|P28705.2|RXRG_MOUSE RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|200882|gb|AAA40082.1| retinoid X receptor-gamma [Mus musculus]
gi|386367|gb|AAB27244.1| retinoid-X receptor-gamma isoform 1 [Mus sp.]
gi|34849539|gb|AAH58401.1| Retinoid X receptor gamma [Mus musculus]
gi|148707231|gb|EDL39178.1| retinoid X receptor gamma [Mus musculus]
Length = 463
Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 281 VEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 339
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL + +VE L+++
Sbjct: 340 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYA 399
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 400 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDSFLMEM 455
>gi|196015032|ref|XP_002117374.1| hypothetical protein TRIADDRAFT_16711 [Trichoplax adhaerens]
gi|190580127|gb|EDV20213.1| hypothetical protein TRIADDRAFT_16711 [Trichoplax adhaerens]
Length = 222
Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 95/178 (53%), Gaps = 2/178 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M + WAK +P + +L DQV+LL+ SW E+F+++ S+P + L A + V
Sbjct: 44 MVIDWAKRIPGYTSLCLNDQVVLLQASWLEVFMIDLAFRSMPY--DNKLVYACDMVMGHK 101
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+A+ R ++ ++R + +D EFACLKA+ L S++R L D +VE++Q
Sbjct: 102 QSRAAGLDEINRHAFELVTKYRSISMDKQEFACLKAIALVNSDSRNLTDVSRVESVQGTL 161
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
+ L ++ ++P QP RF +LL+ + + I S ++ +F K M LL +M
Sbjct: 162 YLALQRYTLLNYPEQPLRFAQLLMTLPELKAISSRGIEKLFSIKVAGEVPMYNLLLEM 219
>gi|403272547|ref|XP_003928117.1| PREDICTED: retinoic acid receptor RXR-gamma [Saimiri boliviensis
boliviensis]
Length = 463
Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 281 VEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 339
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL + +VE L+++
Sbjct: 340 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYA 399
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 400 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
>gi|189066517|dbj|BAG35767.1| unnamed protein product [Homo sapiens]
Length = 463
Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 281 VEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 339
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL + +VE L+++
Sbjct: 340 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYA 399
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 400 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
>gi|115495279|ref|NP_001068876.1| retinoic acid receptor RXR-gamma [Bos taurus]
gi|119367365|sp|Q0VC20.1|RXRG_BOVIN RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|111305288|gb|AAI20392.1| Retinoid X receptor, gamma [Bos taurus]
gi|296489911|tpg|DAA32024.1| TPA: retinoic acid receptor RXR-gamma [Bos taurus]
Length = 463
Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 281 VEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 339
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL + +VE L+++
Sbjct: 340 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYA 399
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 400 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
>gi|61657903|ref|NP_113953.1| retinoic acid receptor RXR-gamma [Rattus norvegicus]
gi|81888393|sp|Q5BJR8.1|RXRG_RAT RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|60551535|gb|AAH91363.1| Retinoid X receptor gamma [Rattus norvegicus]
gi|149058122|gb|EDM09279.1| retinoid X receptor gamma, isoform CRA_a [Rattus norvegicus]
Length = 463
Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 281 VEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 339
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL + +VE L+++
Sbjct: 340 SAGVGSIFDRVLTELVSKMKDMRMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYA 399
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 400 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
>gi|301756739|ref|XP_002914218.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Ailuropoda
melanoleuca]
Length = 463
Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 281 VEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 339
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL + +VE L+++
Sbjct: 340 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYA 399
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 400 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
>gi|1710720|sp|P49743.1|RXRB_RAT RecName: Full=Retinoic acid receptor RXR-beta; AltName:
Full=Nuclear receptor coregulator 1; AltName:
Full=Nuclear receptor subfamily 2 group B member 2;
AltName: Full=Retinoid X receptor beta
Length = 458
Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + + L HV
Sbjct: 276 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI-LLATGLHVHRNSAH 334
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 335 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGEVEILREKVYA 394
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 395 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 450
>gi|348565839|ref|XP_003468710.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Cavia porcellus]
Length = 451
Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 269 VEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 327
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL + +VE L+++
Sbjct: 328 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYA 387
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 388 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 443
>gi|322801809|gb|EFZ22395.1| hypothetical protein SINV_08239 [Solenopsis invicta]
Length = 96
Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 56/96 (58%), Positives = 65/96 (67%), Gaps = 16/96 (16%)
Query: 21 VILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVA---------------AVPNGKAS 65
VILLEE WSELFLLNA+QW LPL ESSPLF+A+E A GK S
Sbjct: 1 VILLEEVWSELFLLNAVQWCLPL-ESSPLFSAAELTALTLSPHQHPHSGLHLQTTTGKPS 59
Query: 66 QTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK 101
Q AADVR L+ LQR++ V VDPAEFAC+KA+VLF+
Sbjct: 60 QVAADVRHLHDTLQRYKAVMVDPAEFACMKAIVLFR 95
>gi|383872390|ref|NP_001244539.1| retinoic acid receptor RXR-gamma [Macaca mulatta]
gi|355558991|gb|EHH15771.1| hypothetical protein EGK_01907 [Macaca mulatta]
gi|355746155|gb|EHH50780.1| hypothetical protein EGM_01657 [Macaca fascicularis]
gi|380815424|gb|AFE79586.1| retinoic acid receptor RXR-gamma isoform a [Macaca mulatta]
Length = 463
Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 281 VEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 339
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL + +VE L+++
Sbjct: 340 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYA 399
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 400 TLEAYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
>gi|148237103|ref|NP_001089591.1| uncharacterized protein LOC734648 [Xenopus laevis]
gi|68533768|gb|AAH99024.1| MGC115510 protein [Xenopus laevis]
Length = 471
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 289 VEWAKRIPHFSDLLLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 347
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL ++ +VE L+++
Sbjct: 348 NAGVGSIFDRVLTELVSKMKDMEMDKSELGCLRAIVLFNPDAKGLSNAAEVEALREKVYA 407
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 408 TLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 463
>gi|334321961|ref|XP_001370409.2| PREDICTED: retinoic acid receptor RXR-gamma-like [Monodelphis
domestica]
Length = 473
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 291 VEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 349
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL + +VE L+++
Sbjct: 350 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVEGLREKVYA 409
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 410 TLEAYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 465
>gi|426217053|ref|XP_004002768.1| PREDICTED: retinoic acid receptor RXR-gamma [Ovis aries]
Length = 463
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 281 VEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 339
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL + +VE L+++
Sbjct: 340 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYA 399
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 400 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
>gi|283488474|gb|ADB24760.1| retinoid x receptor [Agelena silvatica]
Length = 406
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 98/182 (53%), Gaps = 13/182 (7%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLN------AIQWSLPLLESSPLFNASEHV 56
V+WAK++P F LP D+ ILL+ W+EL + + +++ + L + + S H
Sbjct: 225 VEWAKHIPHFNDLPLEDRTILLKSGWNELLIASFCHKSVSVKDGIVLASGTIVHRNSAHN 284
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V T D R+L+ ++ + R + +D E CLKA++LF E + LK + +V NL
Sbjct: 285 AGVG------TIFD-RLLSELVNKMREMKMDKTELGCLKAIILFNPEAKHLKSTQEVTNL 337
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+D+ L ++ + +P Q RF +LLL R+I ++H+FF K + NT ++ L
Sbjct: 338 RDKVYTALEEYCKQMYPQQNGRFPKLLLRLPALRSIGLKCLEHLFFFKLIGNTPIDAFLI 397
Query: 177 DM 178
M
Sbjct: 398 SM 399
>gi|148678299|gb|EDL10246.1| retinoid X receptor beta, isoform CRA_a [Mus musculus]
Length = 451
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + + L HV
Sbjct: 269 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI-LLATGLHVHRNSAH 327
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 328 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGEVEILREKVYA 387
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 388 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 443
>gi|45384256|ref|NP_990625.1| retinoic acid receptor RXR-gamma [Gallus gallus]
gi|133700|sp|P28701.1|RXRG_CHICK RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|63496|emb|CAA41743.1| retinoic acid receptor [Gallus gallus]
Length = 467
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 285 VEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 343
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL +VE+L+++
Sbjct: 344 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSSPSEVESLREKVYA 403
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 404 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 459
>gi|281348859|gb|EFB24443.1| hypothetical protein PANDA_002085 [Ailuropoda melanoleuca]
Length = 447
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 265 VEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 323
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL + +VE L+++
Sbjct: 324 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYA 383
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 384 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 439
>gi|538262|gb|AAA21479.1| ovalbumin upstream promoter transcription factor II, partial [Homo
sapiens]
Length = 351
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 80/129 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 223 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 282
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++Q
Sbjct: 283 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQ 342
Query: 122 VMLAQHVRT 130
L ++VR+
Sbjct: 343 CALEEYVRS 351
>gi|440910600|gb|ELR60380.1| Retinoic acid receptor RXR-gamma, partial [Bos grunniens mutus]
Length = 447
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 265 VEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 323
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL + +VE L+++
Sbjct: 324 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYA 383
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 384 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 439
>gi|194905186|ref|XP_001981146.1| GG11781 [Drosophila erecta]
gi|190655784|gb|EDV53016.1| GG11781 [Drosophila erecta]
Length = 438
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 101/197 (51%), Gaps = 27/197 (13%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLF-----NASEHVA 57
V W K++ +F LP DQ++LLEESW E F+L Q+ +P+ + LF NA+ +
Sbjct: 244 VNWIKSVRAFTELPMPDQLLLLEESWKEFFILAMAQYLMPMNFAQLLFVYESENANREIM 303
Query: 58 AVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK---------------S 102
+ +V VL + + +D E+ CL+A+ LF+ +
Sbjct: 304 GM-------VTREVHAFQEVLNQLCHLNIDSTEYECLRAISLFRNSILTGSGSPNSSASA 356
Query: 103 ETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFF 162
E++GL +S +V + + A+ L +++ HPAQP RF LL + + S ++ +FF
Sbjct: 357 ESKGLLESGKVAAMHNDARSALHNYIQRTHPAQPMRFQTLLGVVQMMHKVSSFTIEELFF 416
Query: 163 AKTVANTSMEKLLCDMY 179
KT+ + ++ +L+ DMY
Sbjct: 417 RKTIGDITIVRLISDMY 433
>gi|262070635|gb|ACY08796.1| ultraspiracle, partial [Tribolium brevicornis]
Length = 284
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 97/174 (55%), Gaps = 9/174 (5%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSEL----FLLNAIQWSLPLLESSPLFNASEHVAA 58
V+WAK++P F +LP DQV+LL W+EL F ++Q ++ ++ L + A
Sbjct: 115 VQWAKHIPHFTSLPISDQVLLLRAGWNELLIAAFSHRSMQAQDAIVLATGLTVNKQTAHA 174
Query: 59 VPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQD 118
V G RVL+ ++ + + + +D E CL+A++L+ + RG+K +VE L++
Sbjct: 175 VGVGNIYD-----RVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSVQEVEMLRE 229
Query: 119 QAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSME 172
+ +L ++ RT HP +P RF +LLL R+I ++H+FF K + + ++
Sbjct: 230 KIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDVPID 283
>gi|449268313|gb|EMC79183.1| Retinoic acid receptor RXR-gamma, partial [Columba livia]
Length = 451
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 269 VEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 327
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL +VE+L+++
Sbjct: 328 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSSPSEVESLREKVYA 387
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 388 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 443
>gi|380800431|gb|AFE72091.1| retinoic acid receptor RXR-beta, partial [Macaca mulatta]
Length = 478
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + + L HV
Sbjct: 296 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI-LLATGLHVHRNSAH 354
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 355 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYA 414
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 415 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 470
>gi|395530718|ref|XP_003767435.1| PREDICTED: retinoic acid receptor RXR-gamma [Sarcophilus harrisii]
Length = 470
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ ++ L HV
Sbjct: 288 VEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSV-TVQDGILLATGLHVHRSSAH 346
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL + +VE L+++
Sbjct: 347 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVEALREKVYA 406
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 407 TLEAYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 462
>gi|387184|gb|AAA37772.1| MHC class I regulatory element binding protein (H-2RIIBP), partial
[Mus musculus]
Length = 446
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + + L HV
Sbjct: 264 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI-LLATGLHVHRNSAH 322
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 323 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGEVEILREKVYA 382
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 383 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 438
>gi|325930187|gb|ADZ45552.1| retinoid X receptor gamma [Taeniopygia guttata]
Length = 468
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 286 VEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 344
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL +VE+L+++
Sbjct: 345 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSSPSEVESLREKVYA 404
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 405 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 460
>gi|47225542|emb|CAG12025.1| unnamed protein product [Tetraodon nigroviridis]
Length = 370
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 101/187 (54%), Gaps = 11/187 (5%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLN----AIQWSLPLLESSPLFNASEHVAA 58
V+WAK +P F+ LP DQVILL W+EL + + +I +L +S L S + A
Sbjct: 176 VEWAKRIPHFSELPLEDQVILLRAGWNELLIASFSHRSINSKDGVLLASELQRDSANSAG 235
Query: 59 V------PNGKASQTAADV-RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSL 111
V N ++++ A RVL ++ + R + +D E CL+A+VLF + +GL S
Sbjct: 236 VGAIFDRENVQSAEVGAIFDRVLTELVNKMRDMQMDKTELGCLRAIVLFNPDAKGLSKSS 295
Query: 112 QVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSM 171
+VE L+++ L + + +P Q RF +LLL R+I ++H+FF K + +T +
Sbjct: 296 EVELLREKVYASLEAYCKQRYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 355
Query: 172 EKLLCDM 178
+ L +M
Sbjct: 356 DTFLMEM 362
>gi|371940918|ref|NP_001243138.1| retinoic acid receptor RXR-gamma [Taeniopygia guttata]
Length = 468
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 286 VEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 344
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL +VE+L+++
Sbjct: 345 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSSPSEVESLREKVYA 404
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 405 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 460
>gi|33386531|emb|CAD45002.1| retinoid X receptor beta [Takifugu rubripes]
Length = 370
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 101/187 (54%), Gaps = 11/187 (5%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLN----AIQWSLPLLESSPLFNASEHVAA 58
V+WAK +P F+ LP DQVILL W+EL + + +I +L +S L S + A
Sbjct: 176 VEWAKRIPHFSELPLEDQVILLRAGWNELLIASFSHRSINSKDGVLLASELQRDSANSAG 235
Query: 59 V------PNGKASQTAADV-RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSL 111
V N ++++ A RVL ++ + R + +D E CL+A+VLF + +GL S
Sbjct: 236 VGAIFDRENVQSAEVGAIFDRVLTELVNKMRDMQMDKTELGCLRAIVLFNPDAKGLSKSS 295
Query: 112 QVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSM 171
+VE L+++ L + + +P Q RF +LLL R+I ++H+FF K + +T +
Sbjct: 296 EVELLREKVYASLEAYCKQRYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 355
Query: 172 EKLLCDM 178
+ L +M
Sbjct: 356 DTFLMEM 362
>gi|410905545|ref|XP_003966252.1| PREDICTED: retinoic acid receptor RXR-beta-A-like [Takifugu
rubripes]
Length = 404
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 101/187 (54%), Gaps = 11/187 (5%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLN----AIQWSLPLLESSPLFNASEHVAA 58
V+WAK +P F+ LP DQVILL W+EL + + +I +L +S L S + A
Sbjct: 210 VEWAKRIPHFSELPLEDQVILLRAGWNELLIASFSHRSINSKDGVLLASELQRDSANSAG 269
Query: 59 V------PNGKASQTAADV-RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSL 111
V N ++++ A RVL ++ + R + +D E CL+A+VLF + +GL S
Sbjct: 270 VGAIFDRENVQSAEVGAIFDRVLTELVNKMRDMQMDKTELGCLRAIVLFNPDAKGLSKSS 329
Query: 112 QVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSM 171
+VE L+++ L + + +P Q RF +LLL R+I ++H+FF K + +T +
Sbjct: 330 EVELLREKVYASLEAYCKQRYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 389
Query: 172 EKLLCDM 178
+ L +M
Sbjct: 390 DTFLMEM 396
>gi|71681086|gb|AAH99776.1| Rxrb protein, partial [Rattus norvegicus]
Length = 485
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + + L HV
Sbjct: 303 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI-LLATGLHVHRNSAH 361
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 362 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGEVEILREKVYA 421
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 422 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 477
>gi|344286664|ref|XP_003415077.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Loxodonta
africana]
Length = 489
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 307 VEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 365
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL + +VE L+++
Sbjct: 366 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVEALREKVYA 425
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 426 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 481
>gi|224587886|gb|ACN58733.1| Nuclear receptor subfamily 2 group F member 5 [Salmo salar]
Length = 178
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 90/149 (60%)
Query: 30 ELFLLNAIQWSLPLLESSPLFNASEHVAAVPNGKASQTAADVRVLNGVLQRFRLVGVDPA 89
ELF+LNA Q S+PL + L A H + + + +RV +++ +++ VD A
Sbjct: 1 ELFVLNAAQCSMPLHVAPLLAAAGLHASPMSAERVVAFMDHIRVFQEQVEKLKVLQVDTA 60
Query: 90 EFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQC 149
E++CLK++VLF S+ GL D VE++Q+++Q L ++VR +P+QP RFGRLLL
Sbjct: 61 EYSCLKSIVLFTSDAMGLSDVAHVESIQEKSQCALEEYVRNQYPSQPNRFGRLLLRLPSL 120
Query: 150 RNIPSARVQHIFFAKTVANTSMEKLLCDM 178
R + S ++ +FF + V T +E LL DM
Sbjct: 121 RIVSSPVIEQLFFVRLVGKTPIETLLRDM 149
>gi|426250132|ref|XP_004018792.1| PREDICTED: retinoic acid receptor RXR-beta [Ovis aries]
Length = 536
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + + L HV
Sbjct: 354 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI-LLATGLHVHRNSAH 412
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 413 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYA 472
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 473 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 528
>gi|16580815|dbj|BAB71758.1| retinoid X receptor alpha [Paralichthys olivaceus]
Length = 292
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 91/170 (53%), Gaps = 1/170 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 123 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSV-TVKDGILLVTGLHVHRSSAH 181
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D E CL+A+VLF + +GL + +VE L+++
Sbjct: 182 SAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAIVLFNPDAKGLSNPPEVEGLREKVYA 241
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSME 172
L + + +P QP RF +LLL R+I ++H+FF K + +T ++
Sbjct: 242 SLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 291
>gi|395533940|ref|XP_003769007.1| PREDICTED: LOW QUALITY PROTEIN: retinoic acid receptor RXR-beta
[Sarcophilus harrisii]
Length = 524
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + + L HV
Sbjct: 342 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSISVRDGI-LLATGLHVHRNSAH 400
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 401 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGEVEILREKVYA 460
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 461 SLESYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 516
>gi|7709422|gb|AAA40081.2| retinoid X receptor beta [Mus musculus]
Length = 448
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + + L HV
Sbjct: 266 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI-LLATGLHVHRNSAH 324
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+++F + +GL + +VE L+++
Sbjct: 325 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIIMFNPDAKGLSNPGEVEILREKVYA 384
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 385 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 440
>gi|348576404|ref|XP_003473977.1| PREDICTED: retinoic acid receptor RXR-beta-like [Cavia porcellus]
Length = 531
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + + L HV
Sbjct: 349 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI-LLATGLHVHRNSAH 407
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 408 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYA 467
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 468 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 523
>gi|77404367|ref|NP_996731.2| retinoic acid receptor RXR-beta [Rattus norvegicus]
gi|149043372|gb|EDL96823.1| rCG60716 [Rattus norvegicus]
Length = 518
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + + L HV
Sbjct: 336 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI-LLATGLHVHRNSAH 394
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 395 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGEVEILREKVYA 454
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 455 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 510
>gi|139948543|ref|NP_001077109.1| retinoic acid receptor RXR-beta [Bos taurus]
gi|63169170|gb|AAY34706.1| retinoid X receptor beta [Bos taurus]
Length = 532
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + + L HV
Sbjct: 350 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI-LLATGLHVHRNSAH 408
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 409 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYA 468
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 469 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 524
>gi|195452812|ref|XP_002073511.1| GK14159 [Drosophila willistoni]
gi|194169596|gb|EDW84497.1| GK14159 [Drosophila willistoni]
Length = 457
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 101/211 (47%), Gaps = 41/211 (19%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLF-----NASEHVA 57
V W K++ +F LP DQ++LLEESW E F+L Q+ +P+ S LF N++ +
Sbjct: 249 VNWIKSVRAFTELPMPDQLMLLEESWKEFFILAMAQYLMPMNFSQLLFVYESENSNREIV 308
Query: 58 AVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK---------------- 101
+ A +V VL + +D E+ CL+A+ LF+
Sbjct: 309 GI-------VAREVHAFQDVLNQLCHFNIDSTEYECLRAISLFRKSPPAASSTEDLANSS 361
Query: 102 -------------SETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQ 148
+E+RGL +S +V + + A+ L ++ HP QP RF LL + SQ
Sbjct: 362 ILTGSGSPNSSASAESRGLLESSKVAAMHNDARNALHNYISRTHPNQPLRFQTLLGVVSQ 421
Query: 149 CRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
+ S ++ +FF KT+ + ++ +L+ DMY
Sbjct: 422 MHKVSSFTIEELFFRKTIGDITIVRLISDMY 452
>gi|16118883|gb|AAL14642.1| retinoid X receptor beta [Neovison vison]
Length = 525
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + + L HV
Sbjct: 343 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI-LLATGLHVHRNSAH 401
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 402 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYA 461
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 462 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 517
>gi|60892853|gb|AAX37291.1| nuclear receptor usp/RXR [Xenos pecki]
Length = 405
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 90/167 (53%), Gaps = 7/167 (4%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
+ WAK++P F +LP DQV+LL+ SW+EL + N S+ ++ L AV
Sbjct: 224 IDWAKHIPYFTSLPVADQVVLLKASWNELLITNFSYRSIDARDAIVLATG----YAVNKN 279
Query: 63 KASQTAADV---RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
A Q + RVL V+ + R + +D E CLK + LF SE +GLK + +VE+L+++
Sbjct: 280 SAHQAGLEAIFDRVLTEVVYKMREIRMDKTEIGCLKCITLFNSEIKGLKSAQEVESLREK 339
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTV 166
+ +H R ++P + RF +LLL R+I ++FF + V
Sbjct: 340 VFCVPDEHTRINYPNEQGRFAKLLLRLPPVRSIALKCTDYLFFCRLV 386
>gi|355561583|gb|EHH18215.1| hypothetical protein EGK_14773 [Macaca mulatta]
Length = 477
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + + L HV
Sbjct: 295 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI-LLATGLHVHRNSAH 353
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 354 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYA 413
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 414 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 469
>gi|431916881|gb|ELK16641.1| Retinoic acid receptor RXR-beta [Pteropus alecto]
Length = 531
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + + L HV
Sbjct: 349 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI-LLATGLHVHRNSAH 407
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 408 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYA 467
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 468 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 523
>gi|148877301|gb|AAI46261.1| Retinoid X receptor, beta [Bos taurus]
gi|296474560|tpg|DAA16675.1| TPA: retinoid X receptor, beta [Bos taurus]
Length = 532
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + + L HV
Sbjct: 350 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI-LLATGLHVHRNSAH 408
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 409 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYA 468
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 469 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 524
>gi|13489062|ref|NP_035436.1| retinoic acid receptor RXR-beta isoform 2 [Mus musculus]
gi|1350912|sp|P28704.2|RXRB_MOUSE RecName: Full=Retinoic acid receptor RXR-beta; AltName: Full=MHC
class I regulatory element-binding protein H-2RIIBP;
AltName: Full=Nuclear receptor subfamily 2 group B
member 2; AltName: Full=Retinoid X receptor beta
gi|987669|dbj|BAA04858.1| RXR-beta1 isoform [Mus musculus]
gi|3811388|gb|AAC69904.1| RXRbeta [Mus musculus]
gi|29437348|gb|AAH49773.1| Retinoid X receptor beta [Mus musculus]
gi|148678301|gb|EDL10248.1| retinoid X receptor beta, isoform CRA_c [Mus musculus]
Length = 520
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + + L HV
Sbjct: 338 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI-LLATGLHVHRNSAH 396
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 397 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGEVEILREKVYA 456
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 457 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 512
>gi|332246155|ref|XP_003272215.1| PREDICTED: retinoic acid receptor RXR-beta [Nomascus leucogenys]
Length = 533
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + + L HV
Sbjct: 351 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI-LLATGLHVHRNSAH 409
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 410 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYA 469
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 470 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 525
>gi|301757105|ref|XP_002914382.1| PREDICTED: retinoic acid receptor RXR-beta-like [Ailuropoda
melanoleuca]
Length = 532
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + + L HV
Sbjct: 350 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI-LLATGLHVHRNSAH 408
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 409 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYA 468
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 469 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 524
>gi|297661275|ref|XP_002809190.1| PREDICTED: retinoic acid receptor RXR-beta isoform 1 [Pongo abelii]
Length = 532
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + + L HV
Sbjct: 350 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI-LLATGLHVHRNSAH 408
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 409 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYA 468
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 469 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 524
>gi|297290572|ref|XP_001108780.2| PREDICTED: retinoic acid receptor RXR-beta-like [Macaca mulatta]
Length = 534
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + + L HV
Sbjct: 352 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI-LLATGLHVHRNSAH 410
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 411 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYA 470
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 471 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 526
>gi|11415052|ref|NP_068811.1| retinoic acid receptor RXR-beta isoform 2 [Homo sapiens]
gi|114606827|ref|XP_001168893.1| PREDICTED: retinoic acid receptor RXR-beta isoform 4 [Pan
troglodytes]
gi|397474336|ref|XP_003808638.1| PREDICTED: retinoic acid receptor RXR-beta [Pan paniscus]
gi|402866633|ref|XP_003897483.1| PREDICTED: retinoic acid receptor RXR-beta [Papio anubis]
gi|1350911|sp|P28702.2|RXRB_HUMAN RecName: Full=Retinoic acid receptor RXR-beta; AltName:
Full=Nuclear receptor subfamily 2 group B member 2;
AltName: Full=Retinoid X receptor beta
gi|30448|emb|CAA45087.1| retinoic acid X receptor b [Homo sapiens]
gi|3172498|gb|AAC18599.1| retinoic X receptor B [Homo sapiens]
gi|3820986|emb|CAA20239.1| retinoid X receptor, beta [Homo sapiens]
gi|4249766|gb|AAD13794.1| retinoic X receptor beta [Homo sapiens]
gi|12654659|gb|AAH01167.1| Retinoid X receptor, beta [Homo sapiens]
gi|30583399|gb|AAP35944.1| retinoid X receptor, beta [Homo sapiens]
gi|60655367|gb|AAX32247.1| retinoid X receptor beta [synthetic construct]
gi|119624084|gb|EAX03679.1| retinoid X receptor, beta [Homo sapiens]
gi|325495499|gb|ADZ17355.1| retinoid X nuclear receptor beta [Homo sapiens]
gi|410222100|gb|JAA08269.1| retinoid X receptor, beta [Pan troglodytes]
gi|410263016|gb|JAA19474.1| retinoid X receptor, beta [Pan troglodytes]
gi|410295524|gb|JAA26362.1| retinoid X receptor, beta [Pan troglodytes]
gi|410330369|gb|JAA34131.1| retinoid X receptor, beta [Pan troglodytes]
Length = 533
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + + L HV
Sbjct: 351 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI-LLATGLHVHRNSAH 409
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 410 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYA 469
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 470 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 525
>gi|426352703|ref|XP_004043849.1| PREDICTED: retinoic acid receptor RXR-beta [Gorilla gorilla
gorilla]
Length = 533
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + + L HV
Sbjct: 351 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI-LLATGLHVHRNSAH 409
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 410 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYA 469
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 470 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 525
>gi|337720|gb|AAA60293.1| retinoid X receptor beta [Homo sapiens]
Length = 533
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + + L HV
Sbjct: 351 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI-LLATGLHVHRNSAH 409
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 410 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYA 469
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 470 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 525
>gi|291396013|ref|XP_002714529.1| PREDICTED: Retinoic acid receptor RXR-beta-like [Oryctolagus
cuniculus]
Length = 537
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + + L HV
Sbjct: 355 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI-LLATGLHVHRNSAH 413
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 414 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYA 473
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 474 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 529
>gi|20663783|pdb|1H9U|A Chain A, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
gi|20663784|pdb|1H9U|B Chain B, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
gi|20663785|pdb|1H9U|C Chain C, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
gi|20663786|pdb|1H9U|D Chain D, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
Length = 224
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 91/173 (52%), Gaps = 1/173 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + L HV
Sbjct: 53 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDV-RDGILLATGLHVHRNSAH 111
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 112 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYA 171
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLL 175
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L
Sbjct: 172 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFL 224
>gi|296197857|ref|XP_002746468.1| PREDICTED: retinoic acid receptor RXR-beta isoform 1 [Callithrix
jacchus]
Length = 532
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + + L HV
Sbjct: 350 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI-LLATGLHVHRNSAH 408
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 409 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYA 468
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 469 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 524
>gi|6983809|emb|CAB75361.1| USP protein [Tenebrio molitor]
Length = 408
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 97/182 (53%), Gaps = 13/182 (7%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSEL----FLLNAIQWSLPLLESSPLF--NASEHV 56
V+WAK +P F +LP DQV+LL W+EL F +IQ ++ ++ L S H
Sbjct: 227 VQWAKLIPHFTSLPMSDQVLLLRAGWNELLIAAFSHRSIQAQDAIVLATGLTVNKTSAHA 286
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
V N RVL+ ++ + + + +D E CL+A++L+ RG+K +VE L
Sbjct: 287 VGVGN-------IYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPTCRGIKSVQEVEML 339
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+++ +L ++ RT HP +P RF +LLL R+I +H+FF K + + ++ L
Sbjct: 340 REKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCSEHLFFFKLIGDVPIDTFLM 399
Query: 177 DM 178
+M
Sbjct: 400 EM 401
>gi|340025441|gb|AEK27051.1| retinoid X receptor gamma [Lateolabrax japonicus]
Length = 453
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 93/176 (52%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 271 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSV-TVKDGILLATGLHVHRSSAH 329
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D E CL+A+VLF + +GL + +VE L+++
Sbjct: 330 SAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAIVLFNPDAKGLSNPPEVEALREKVYA 389
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +L+ R+I ++H+FF K + +T ++ L +M
Sbjct: 390 SLESYTKQKYPDQPGRFAKLVFRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 445
>gi|344298826|ref|XP_003421092.1| PREDICTED: retinoic acid receptor RXR-beta-like [Loxodonta
africana]
Length = 532
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + + L HV
Sbjct: 350 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI-LLATGLHVHRNSAH 408
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 409 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYA 468
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 469 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 524
>gi|403261960|ref|XP_003923366.1| PREDICTED: retinoic acid receptor RXR-beta [Saimiri boliviensis
boliviensis]
Length = 505
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + + L HV
Sbjct: 323 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI-LLATGLHVHRNSAH 381
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 382 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYA 441
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 442 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 497
>gi|73972484|ref|XP_538856.2| PREDICTED: retinoid X receptor, beta isoform 1 [Canis lupus
familiaris]
Length = 532
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + + L HV
Sbjct: 350 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI-LLATGLHVHRNSAH 408
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 409 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYA 468
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 469 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 524
>gi|62900941|sp|Q5TJF7.1|RXRB_CANFA RecName: Full=Retinoic acid receptor RXR-beta; AltName:
Full=Nuclear receptor subfamily 2 group B member 2;
AltName: Full=Retinoid X receptor beta
gi|55956944|emb|CAI11431.1| retinoid X receptor beta [Canis lupus familiaris]
Length = 533
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + + L HV
Sbjct: 351 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI-LLATGLHVHRNSAH 409
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 410 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYA 469
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 470 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 525
>gi|410958898|ref|XP_003986050.1| PREDICTED: retinoic acid receptor RXR-beta [Felis catus]
Length = 532
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + + L HV
Sbjct: 350 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI-LLATGLHVHRNSAH 408
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 409 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYA 468
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 469 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 524
>gi|298228982|ref|NP_001177175.1| retinoic acid receptor RXR-beta [Sus scrofa]
gi|147223294|emb|CAN13296.1| retinoid X receptor, beta [Sus scrofa]
Length = 532
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + + L HV
Sbjct: 350 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI-LLATGLHVHRNSAH 408
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 409 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYA 468
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 469 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 524
>gi|158429174|pdb|2NXX|A Chain A, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
gi|158429176|pdb|2NXX|B Chain B, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
gi|158429178|pdb|2NXX|C Chain C, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
gi|158429180|pdb|2NXX|D Chain D, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
Length = 235
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 98/183 (53%), Gaps = 9/183 (4%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSEL----FLLNAIQWSLPLLESSPLFNASEHVAA 58
V+WAK +P F +LP DQV LL W+EL F ++Q ++ ++ L A
Sbjct: 54 VQWAKLVPHFTSLPLTDQVQLLRAGWNELLIAAFSHRSMQAQDAIVLATGLTVNKSTAHA 113
Query: 59 VPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQD 118
V G RVL+ ++ + + + +D E CL+A++L+ + RG+K +VE L++
Sbjct: 114 VGVGNIYD-----RVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSVQEVEMLRE 168
Query: 119 QAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
+ +L ++ RT HP +P RF +LLL R+I ++H+FF K + + ++ L +M
Sbjct: 169 KIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDVPIDTFLMEM 228
Query: 179 YKN 181
+
Sbjct: 229 LEG 231
>gi|395832129|ref|XP_003789128.1| PREDICTED: retinoic acid receptor RXR-beta [Otolemur garnettii]
Length = 532
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + + L HV
Sbjct: 350 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI-LLATGLHVHRNSAH 408
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 409 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYA 468
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 469 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 524
>gi|262070641|gb|ACY08799.1| ultraspiracle, partial [Tribolium destructor]
Length = 283
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 92/170 (54%), Gaps = 1/170 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F +LP DQV+LL W+EL + S+ ++ L + N
Sbjct: 114 VQWAKLIPHFTSLPLSDQVLLLRAGWNELLIAAFSHRSMQAQDAIVLATGLTVNKSTANA 173
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
D RVL+ ++ + + + +D E CL+A++L+ + RG+K +VE L+++
Sbjct: 174 VGVGNIYD-RVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSVQEVEMLREKIYG 232
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSME 172
+L ++ RT HP +P RF +LLL R+I ++H+FF K + + ++
Sbjct: 233 VLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDVPID 282
>gi|291223399|ref|XP_002731697.1| PREDICTED: retinoid X receptor-like protein [Saccoglossus
kowalevskii]
Length = 497
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 90/176 (51%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F LP DQVILL W+EL L+ A ++ L HV
Sbjct: 316 VEWAKRIPHFTELPLDDQVILLRAGWNEL-LIAAFSHRSIAVKDGILLATGLHVHRNSAH 374
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A RVL ++ + R + +D E CL+A+VLF + + L +VE L+++
Sbjct: 375 SAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVLFNPDAKNLGTVQKVEELREKVYA 434
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ R +P +P RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 435 SLEEYCRKTYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 490
>gi|283464101|gb|ADB22634.1| retinoid X receptor-like protein [Saccoglossus kowalevskii]
Length = 531
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 90/176 (51%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F LP DQVILL W+EL L+ A ++ L HV
Sbjct: 350 VEWAKRIPHFTELPLDDQVILLRAGWNEL-LIAAFSHRSIAVKDGILLATGLHVHRNSAH 408
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A RVL ++ + R + +D E CL+A+VLF + + L +VE L+++
Sbjct: 409 SAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVLFNPDAKNLGTVQKVEELREKVYA 468
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ R +P +P RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 469 SLEEYCRKTYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 524
>gi|327285576|ref|XP_003227509.1| PREDICTED: nuclear receptor subfamily 0 group B member 2-like
[Anolis carolinensis]
Length = 254
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 96/186 (51%), Gaps = 11/186 (5%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSL---------PLLESSPLFNA 52
+ + KNLPSF LP+ DQ++LL+ W+ LFLL +Q ++ P + L +
Sbjct: 67 TISFMKNLPSFQLLPWEDQLLLLDSCWAPLFLLGLVQETVTFEVTETPAPSMLERILLDG 126
Query: 53 SEHVAAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQ 112
P +A T A V+ L L F + + P E+A LK +LF + GLK S
Sbjct: 127 PRKRPEPP--RARPTLASVQRLQCCLNSFYSLDLSPKEYAYLKGAILFNPDIPGLKASSY 184
Query: 113 VENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSME 172
+E+LQ +AQ L + + H RF R+LL++S ++IP + + +FF + N +
Sbjct: 185 IESLQKEAQRALQEVLALLHLEDQGRFARVLLISSSLKSIPPSLLTDLFFQPIIGNVDIL 244
Query: 173 KLLCDM 178
+LL DM
Sbjct: 245 ELLSDM 250
>gi|31376304|dbj|BAC77243.1| retinoid X receptor [Oreochromis niloticus]
Length = 267
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 92/176 (52%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L HV
Sbjct: 89 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSISV-KDGILLATGLHVHRNSAH 147
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 148 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIILFNPDAKGLSNPSEVELLRERVYA 207
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T + L +M
Sbjct: 208 SLEAYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTRHDTFLMEM 263
>gi|410926021|ref|XP_003976477.1| PREDICTED: retinoic acid receptor RXR-beta-A-like isoform 1
[Takifugu rubripes]
Length = 417
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 93/176 (52%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L HV
Sbjct: 235 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSISV-KDGILLATGLHVHRNSAH 293
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 294 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIILFNPDAKGLSNPSEVELLRERVYA 353
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 354 SLEAYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 409
>gi|349804913|gb|AEQ17929.1| putative nuclear receptor subfamily 2 group f number 1
[Hymenochirus curtipes]
Length = 168
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 83/134 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
A++WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H A +
Sbjct: 35 AIEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHAAPMSA 94
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++Q
Sbjct: 95 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQ 154
Query: 122 VMLAQHVRTHHPAQ 135
L ++VR+ +P Q
Sbjct: 155 CALEEYVRSQYPNQ 168
>gi|32169341|emb|CAD99183.1| retinoid X receptor [Dicentrarchus labrax]
Length = 274
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 92/176 (52%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQV LL W+EL + + S+ + + L HV
Sbjct: 99 VEWAKRIPHFSELQLDDQVTLLRAGWNELLIASFSHRSIAI-KDGILLATGLHVHRNSAH 157
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 158 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPSEVEALREKVYA 217
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I +H+FF K + +T ++ L +M
Sbjct: 218 SLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCQEHLFFFKLIGDTPIDTFLMEM 273
>gi|345325277|ref|XP_003430902.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Ornithorhynchus anatinus]
Length = 337
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 93/181 (51%), Gaps = 43/181 (23%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M++KWAK++P+F+ L DQ++LLE++W ELF+L QW++P+ ++ L
Sbjct: 197 MSIKWAKSVPAFSTLSLPDQLMLLEDAWRELFVLGIAQWAIPVDANTLL----------- 245
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
A V +G SE R ++ + LQD+A
Sbjct: 246 -------AVSVPTHSG-------------------------SELRSFGNAAAIAALQDEA 273
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
Q+ L ++ T +P QP RFG+LLL+ R+I + ++ +FF KT+ N + +LL DMYK
Sbjct: 274 QLTLNSYIHTRYPTQPCRFGKLLLLLPALRSIGPSTIEEVFFKKTIGNVPITRLLSDMYK 333
Query: 181 N 181
+
Sbjct: 334 S 334
>gi|189442705|gb|AAI67577.1| rxrb protein [Xenopus (Silurana) tropicalis]
Length = 412
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 92/176 (52%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L HV
Sbjct: 230 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSISV-KDGILLATGLHVHRNSAH 288
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + VE L+++
Sbjct: 289 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGDVEVLREKVYA 348
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 349 SLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 404
>gi|348541129|ref|XP_003458039.1| PREDICTED: retinoic acid receptor RXR-beta-A isoform 1 [Oreochromis
niloticus]
Length = 417
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 93/176 (52%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L HV
Sbjct: 235 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSISV-KDGILLATGLHVHRNSAH 293
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 294 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIILFNPDAKGLSNPSEVELLRERVYA 353
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 354 SLEAYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 409
>gi|3929579|gb|AAC80008.1| retinoic acid X receptor [Tripedalia cystophora]
Length = 435
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 93/175 (53%), Gaps = 1/175 (0%)
Query: 4 KWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNGK 63
+WAK LP F L DQV+LL+ SW EL + S ++ L + H+ K
Sbjct: 256 EWAKRLPHFRDLSIADQVVLLQWSWPELLIGGFCHRSC-AVKDGILLSTGLHLTRDNLKK 314
Query: 64 ASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVM 123
A A ++ + V+++ + + +D AE+ CL+A++LF + +GL QVEN ++
Sbjct: 315 AGVGAIIDKIFSEVIEKMQEIQMDRAEWGCLRAIMLFSPDAKGLTAIDQVENYRELYTST 374
Query: 124 LAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L HV+ HP QP RF +++L ++I ++H++F K + + M+ L DM
Sbjct: 375 LEDHVKRKHPEQPDRFTKVILRIPALKSIGLQALEHLYFFKLIGDVPMDTFLLDM 429
>gi|118343980|ref|NP_001071809.1| nuclear receptor [Ciona intestinalis]
gi|70571095|dbj|BAE06678.1| nuclear receptor [Ciona intestinalis]
Length = 507
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 92/181 (50%), Gaps = 13/181 (7%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPL------FNASEHV 56
V+WAK +P F LP DQV LL W+EL + + S+ + + L + S H
Sbjct: 303 VEWAKRVPMFGTLPLDDQVTLLRAGWNELLIASFSHRSIEIPDGIILASGLRVYRQSAHS 362
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V A RVL ++ + R + +D E CL+A+VLF + + L D +E L
Sbjct: 363 AGV-------GAIFDRVLTELIAKMRDMSMDRTELGCLRAIVLFNPDAKDLTDPAYIETL 415
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+++ L + ++ +P Q RF +LLL R+I ++H+FF K + NT +++ L
Sbjct: 416 REKVYASLEVYCKSKYPDQAGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGNTPIDQFLM 475
Query: 177 D 177
D
Sbjct: 476 D 476
>gi|62860048|ref|NP_001015937.1| retinoid X receptor, beta [Xenopus (Silurana) tropicalis]
gi|89268107|emb|CAJ83850.1| Retinoic acid receptor RXR-beta (Retinoid X receptor beta) [Xenopus
(Silurana) tropicalis]
Length = 449
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 92/176 (52%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L HV
Sbjct: 267 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSISV-KDGILLATGLHVHRNSAH 325
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + VE L+++
Sbjct: 326 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGDVEVLREKVYA 385
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 386 SLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 441
>gi|47940249|gb|AAH72132.1| Rxrb protein [Xenopus laevis]
Length = 449
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 92/176 (52%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L HV
Sbjct: 267 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSISV-KDGILLATGLHVHRNSAH 325
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + VE L+++
Sbjct: 326 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGDVEVLREKVYA 385
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 386 SLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 441
>gi|54026|emb|CAA46964.1| retinoid X receptor-gamma [Mus musculus]
Length = 463
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 93/176 (52%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 281 VEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 339
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ RVL ++ + + + +D +E CL+A+VLF + +GL + +VE L+++
Sbjct: 340 SRGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYA 399
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 400 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDSFLMEM 455
>gi|6007621|gb|AAF00981.1|AF136372_1 RXR [Locusta migratoria]
Length = 389
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 98/182 (53%), Gaps = 13/182 (7%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WAK++P F +LP DQV+LL W+EL + S+ + + L S H
Sbjct: 208 VEWAKHIPHFTSLPLEDQVLLLRAGWNELLIAAFSHRSVDVKDGIVLATGLTVHRNSAHQ 267
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V T D RVL ++ + R + +D E CL++V+LF E RGLK + +VE L
Sbjct: 268 AGV------GTIFD-RVLTELVAKMREMKMDKTELGCLRSVILFNPEVRGLKSAQEVELL 320
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+++ L ++ RT HP +P RF +LLL R+I ++H+FF + + + ++ L
Sbjct: 321 REKVYAALEEYTRTTHPDEPGRFAKLLLRLPSLRSIGLKCLEHLFFFRLIGDVPIDTFLM 380
Query: 177 DM 178
+M
Sbjct: 381 EM 382
>gi|158302179|ref|XP_321796.4| AGAP001348-PA [Anopheles gambiae str. PEST]
gi|157012826|gb|EAA01088.4| AGAP001348-PA [Anopheles gambiae str. PEST]
Length = 430
Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 98/182 (53%), Gaps = 24/182 (13%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
+AVKWAK +PSF LP DQ +LLEE+W+ELF++ A QW LP+ +E +A P
Sbjct: 272 LAVKWAKTVPSFLQLPANDQKLLLEEAWAELFVITAAQWGLPI--------DNEFIARNP 323
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
Q+A +Q+F + VD E ACLKA+VLF+ + L + +V LQDQ
Sbjct: 324 QAVKLQSA---------IQQFGIARVDYREAACLKALVLFRPDQPRLYAAHEVLLLQDQT 374
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARV-QHIFFAKTVANTSMEKLLCDMY 179
+L H R G LLL+ + +A+V Q + F KTV ++E+LL D+
Sbjct: 375 VALL------HEKCGGVRLGHLLLLLPAIKAAANAKVLQEMLFRKTVGEVAIERLLLDLM 428
Query: 180 KN 181
K
Sbjct: 429 KT 430
>gi|33943178|gb|AAQ55293.1| nuclear receptor RXR-l [Locusta migratoria]
Length = 411
Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 98/182 (53%), Gaps = 13/182 (7%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WAK++P F +LP DQV+LL W+EL + S+ + + L S H
Sbjct: 230 VEWAKHIPHFTSLPLEDQVLLLRAGWNELLIAAFSHRSVDVKDGIVLATGLTVHRNSAHQ 289
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V T D RVL ++ + R + +D E CL++V+LF E RGLK + +VE L
Sbjct: 290 AGV------GTIFD-RVLTELVAKMREMKMDKTELGCLRSVILFNPEVRGLKSAQEVELL 342
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+++ L ++ RT HP +P RF +LLL R+I ++H+FF + + + ++ L
Sbjct: 343 REKVYAALEEYTRTTHPDEPGRFAKLLLRLPSLRSIGLKCLEHLFFFRLIGDVPIDTFLM 402
Query: 177 DM 178
+M
Sbjct: 403 EM 404
>gi|282165797|ref|NP_001107766.2| ultraspiracle nuclear receptor [Tribolium castaneum]
gi|270008201|gb|EFA04649.1| ultraspiracle, partial [Tribolium castaneum]
Length = 407
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 96/182 (52%), Gaps = 13/182 (7%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLN------AIQWSLPLLESSPLFNASEHV 56
V+WAK +P F +LP DQV LL W+EL + Q ++ L + ++ H
Sbjct: 226 VQWAKLVPHFTSLPLTDQVQLLRAGWNELLIAAFSHRSMQAQDAIVLATGLTVNKSTAHA 285
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
V N RVL+ ++ + + + +D E CL+A++L+ + RG+K +VE L
Sbjct: 286 VGVGN-------IYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSVQEVEML 338
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+++ +L ++ RT HP +P RF +LLL R+I ++H+FF K + + ++ L
Sbjct: 339 REKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDVPIDTFLM 398
Query: 177 DM 178
+M
Sbjct: 399 EM 400
>gi|121308144|emb|CAL25729.1| ultraspiracle nuclear receptor [Tribolium castaneum]
Length = 407
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 96/182 (52%), Gaps = 13/182 (7%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLN------AIQWSLPLLESSPLFNASEHV 56
V+WAK +P F +LP DQV LL W+EL + Q ++ L + ++ H
Sbjct: 226 VQWAKLVPHFTSLPLTDQVQLLRAGWNELLIAAFSHRSMQAQDAIVLATGLTVNKSTAHA 285
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
V N RVL+ ++ + + + +D E CL+A++L+ + RG+K +VE L
Sbjct: 286 VGVGN-------IYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSVQEVEML 338
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+++ +L ++ RT HP +P RF +LLL R+I ++H+FF K + + ++ L
Sbjct: 339 REKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDVPIDTFLM 398
Query: 177 DM 178
+M
Sbjct: 399 EM 400
>gi|62088068|dbj|BAD92481.1| retinoid X receptor, beta variant [Homo sapiens]
Length = 577
Score = 99.4 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 57/182 (31%), Positives = 96/182 (52%), Gaps = 9/182 (4%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WAK +P F++LP DQVILL W+EL + + S+ + + L S H
Sbjct: 391 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHS 450
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V A + RVL ++ + R + +D E CL+A++LF + +GL + +VE L
Sbjct: 451 AGV---GAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVL 507
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+++ L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L
Sbjct: 508 REKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLM 567
Query: 177 DM 178
+M
Sbjct: 568 EM 569
>gi|307194605|gb|EFN76894.1| Retinoic acid receptor RXR-alpha-A [Harpegnathos saltator]
Length = 389
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 7/179 (3%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V WAK++P F +LP DQV+LL W+EL + S+ + + L + V
Sbjct: 208 VAWAKHIPHFTSLPLEDQVLLLRAGWNELLIAAFSHRSIDVKDGIVLATGT----TVNRN 263
Query: 63 KASQTAADV---RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
A Q RVL+ ++ + R + +D E CL++++LF + RGLK +V L+++
Sbjct: 264 SAQQAGVGTIFDRVLSELVSKMREMEMDRTELGCLRSIILFNPDVRGLKSVQEVNLLREK 323
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ R P P RF +LLL R+I ++H+FF K + ++ ++ L +M
Sbjct: 324 IYAALEEYTRMSRPNDPGRFAKLLLRLPSIRSIGLKCLEHLFFFKVIGDSPIDDFLMEM 382
>gi|147223296|emb|CAN13298.1| retinoid X receptor, beta [Sus scrofa]
Length = 414
Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 96/182 (52%), Gaps = 9/182 (4%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WAK +P F++LP DQVILL W+EL + + S+ + + L S H
Sbjct: 228 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHS 287
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V A + RVL ++ + R + +D E CL+A++LF + +GL + +VE L
Sbjct: 288 AGV---GAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVL 344
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+++ L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L
Sbjct: 345 REKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLM 404
Query: 177 DM 178
+M
Sbjct: 405 EM 406
>gi|35311|emb|CAA46456.1| MHC class I promoter binding protein [Homo sapiens]
Length = 231
Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 96/182 (52%), Gaps = 9/182 (4%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WAK +P F++LP DQVILL W+EL + + S+ + + L S H
Sbjct: 45 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHS 104
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V A + RVL ++ + R + +D E CL+A++LF + +GL + +VE L
Sbjct: 105 AGV---GAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVL 161
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+++ L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L
Sbjct: 162 REKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLM 221
Query: 177 DM 178
+M
Sbjct: 222 EM 223
>gi|262070639|gb|ACY08798.1| ultraspiracle, partial [Tribolium madens]
Length = 284
Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 94/176 (53%), Gaps = 13/176 (7%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLN------AIQWSLPLLESSPLFNASEHV 56
V+WAK +P F +LP DQV+LL W+EL + Q ++ L + ++ H
Sbjct: 115 VQWAKLIPHFTSLPLSDQVLLLRAGWNELLIAAFSHRSMQAQDAIVLATGLTVNKSTAHA 174
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
V N RVL+ ++ + + + +D E CL+A++L+ + RG+K +VE L
Sbjct: 175 VGVGNIYD-------RVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSVQEVEML 227
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSME 172
+++ +L ++ RT HP +P RF +LLL R+I ++H+FF K + + ++
Sbjct: 228 REKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDVPID 283
>gi|239735516|ref|NP_001155140.1| ultraspiracle [Acyrthosiphon pisum]
Length = 433
Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 94/176 (53%), Gaps = 7/176 (3%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK++P F LP DQV+LL W+EL + S+ + + L V
Sbjct: 247 VEWAKHIPHFKNLPLGDQVLLLRAGWNELMIAAFSHRSISVKDGIVLATG----LTVDRD 302
Query: 63 KASQTAADV---RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
A Q + RVL ++ + R +G+D E CL+ ++LF ++GL+ +VE L+D+
Sbjct: 303 SAHQAGVEAIFDRVLTELVAKMRDMGMDRTELGCLRTIILFNPGSKGLQSVNEVEVLRDK 362
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLL 175
V L ++ RT HP +P RF +LLL R+I ++H+FF K + ++ ++ L
Sbjct: 363 VYVALEEYCRTTHPEEPGRFAKLLLRLPSLRSIGLKCLEHLFFYKLIGDSPIDTFL 418
>gi|355748459|gb|EHH52942.1| hypothetical protein EGM_13484, partial [Macaca fascicularis]
Length = 475
Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 96/182 (52%), Gaps = 9/182 (4%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WAK +P F++LP DQVILL W+EL + + S+ + + L S H
Sbjct: 289 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHS 348
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V A + RVL ++ + R + +D E CL+A++LF + +GL + +VE L
Sbjct: 349 AGV---GAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVL 405
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+++ L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L
Sbjct: 406 REKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLM 465
Query: 177 DM 178
+M
Sbjct: 466 EM 467
>gi|338718022|ref|XP_001493349.2| PREDICTED: retinoic acid receptor RXR-beta-like [Equus caballus]
Length = 347
Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 96/182 (52%), Gaps = 9/182 (4%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WAK +P F++LP DQVILL W+EL + + S+ + + L S H
Sbjct: 161 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHS 220
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V A + RVL ++ + R + +D E CL+A++LF + +GL + +VE L
Sbjct: 221 AGVG---AIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVL 277
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+++ L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L
Sbjct: 278 REKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLM 337
Query: 177 DM 178
+M
Sbjct: 338 EM 339
>gi|148678300|gb|EDL10247.1| retinoid X receptor beta, isoform CRA_b [Mus musculus]
Length = 455
Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 96/182 (52%), Gaps = 9/182 (4%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WAK +P F++LP DQVILL W+EL + + S+ + + L S H
Sbjct: 269 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHS 328
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V A + RVL ++ + R + +D E CL+A++LF + +GL + +VE L
Sbjct: 329 AGV---GAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGEVEIL 385
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+++ L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L
Sbjct: 386 REKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLM 445
Query: 177 DM 178
+M
Sbjct: 446 EM 447
>gi|327315358|ref|NP_001192144.1| retinoic acid receptor RXR-beta isoform 3 [Mus musculus]
gi|18044456|gb|AAH19432.1| Rxrb protein [Mus musculus]
gi|74150089|dbj|BAE24359.1| unnamed protein product [Mus musculus]
Length = 414
Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 96/182 (52%), Gaps = 9/182 (4%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WAK +P F++LP DQVILL W+EL + + S+ + + L S H
Sbjct: 228 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHS 287
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V A + RVL ++ + R + +D E CL+A++LF + +GL + +VE L
Sbjct: 288 AGV---GAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGEVEIL 344
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+++ L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L
Sbjct: 345 REKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLM 404
Query: 177 DM 178
+M
Sbjct: 405 EM 406
>gi|312371094|gb|EFR19357.1| hypothetical protein AND_22643 [Anopheles darlingi]
Length = 486
Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 98/182 (53%), Gaps = 24/182 (13%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
+AVKWAK +PSF LP DQ ILLEE+W+ELF++ A QW LP+ +E +A P
Sbjct: 328 LAVKWAKTVPSFLQLPASDQKILLEEAWAELFVITAAQWGLPI--------DNEFIARNP 379
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+R L G +Q+F + VD E ACLKA+VLF+ + L + +V LQDQ
Sbjct: 380 --------LAIR-LQGAIQQFAVARVDYREAACLKALVLFRPDHPRLYAAHEVLLLQDQT 430
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARV-QHIFFAKTVANTSMEKLLCDMY 179
+L H R G LLL+ + + +V Q + F KTV ++E+LL D+
Sbjct: 431 VALL------HEKCGGVRLGHLLLLLPAIKAAANPKVLQEMLFRKTVGEVAIERLLLDLM 484
Query: 180 KN 181
K
Sbjct: 485 KT 486
>gi|238558272|gb|ACR45970.1| ultraspiracle, partial [Acyrthosiphon pisum]
Length = 428
Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 94/176 (53%), Gaps = 7/176 (3%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK++P F LP DQV+LL W+EL + S+ + + L V
Sbjct: 247 VEWAKHIPHFKNLPLGDQVLLLRAGWNELMIAAFSHRSISVKDGIVLATG----LTVDRD 302
Query: 63 KASQTAADV---RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
A Q + RVL ++ + R +G+D E CL+ ++LF ++GL+ +VE L+D+
Sbjct: 303 SAHQAGVEAIFDRVLTELVAKMRDMGMDRTELGCLRTIILFNPGSKGLQSVNEVEVLRDK 362
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLL 175
V L ++ RT HP +P RF +LLL R+I ++H+FF K + ++ ++ L
Sbjct: 363 VYVALEEYCRTTHPEEPGRFAKLLLRLPSLRSIGLKCLEHLFFYKLIGDSPIDTFL 418
>gi|195061143|ref|XP_001995934.1| GH14219 [Drosophila grimshawi]
gi|193891726|gb|EDV90592.1| GH14219 [Drosophila grimshawi]
Length = 445
Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 102/211 (48%), Gaps = 41/211 (19%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLF-----NASEHVA 57
V W K++ +F LP DQ++LLEESW E F+L Q+ +P+ + LF NA+ +
Sbjct: 237 VNWIKSVRAFTELPMPDQLLLLEESWKEFFILAMSQYLMPMNFAQLLFVYEAENANREIV 296
Query: 58 AVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK---------------- 101
A+ + +V VL + + +D E+ CL+A+ LF+
Sbjct: 297 AI-------VSREVHAFQDVLNQLCHLNIDTTEYECLRAISLFRKSPPAASSTEDLANSS 349
Query: 102 -------------SETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQ 148
+E+RGL +S +V + + A+ L ++ HP QP RF LL + S
Sbjct: 350 ILTGSGSPNSSASAESRGLLESSKVAGMHNDARNALHNYISRTHPNQPLRFQTLLGVVSL 409
Query: 149 CRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
+ S ++ +FF KT+ + ++ +L+ DMY
Sbjct: 410 MHKVSSFTIEELFFRKTIGDITIVRLISDMY 440
>gi|262070637|gb|ACY08797.1| ultraspiracle, partial [Tribolium freemani]
Length = 284
Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 94/176 (53%), Gaps = 13/176 (7%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLN------AIQWSLPLLESSPLFNASEHV 56
V+WAK +P F +LP DQV+LL W+EL + Q ++ L + ++ H
Sbjct: 115 VQWAKLVPHFTSLPLSDQVLLLRAGWNELLIAAFSHRSMQAQDAIVLATGLTVNKSTAHA 174
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
V N RVL+ ++ + + + +D E CL+A++L+ + RG+K +VE L
Sbjct: 175 VGVGNIYD-------RVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSVQEVEML 227
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSME 172
+++ +L ++ RT HP +P RF +LLL R+I ++H+FF K + + ++
Sbjct: 228 REKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDVPID 283
>gi|226316413|gb|ACO44670.1| retinoid X receptor isoform 3 [Crangon crangon]
Length = 399
Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 98/181 (54%), Gaps = 12/181 (6%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPL-----LESSPLFNASEHVA 57
V+WAK++P F LP +DQV+LL+ W+EL + S+ + L + + +S H A
Sbjct: 214 VEWAKHIPHFTDLPVQDQVVLLKAGWNELLIAAFSHRSIGVKDGIVLATGLVHRSSAHQA 273
Query: 58 AVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQ 117
V T D RVL+ ++ + + + +D E CL+++VLF + RGL VE L+
Sbjct: 274 GV------GTIFD-RVLSELVAKMKEMKMDKTELGCLRSIVLFNPDARGLTSCNDVEILR 326
Query: 118 DQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCD 177
++ L ++ RT +P +P RF +LLL R+I ++++F K + +T ++ L
Sbjct: 327 EKVYAALEEYTRTSYPHEPGRFAKLLLRLPALRSIGLKCLEYLFLFKLIGDTPLDNYLMK 386
Query: 178 M 178
M
Sbjct: 387 M 387
>gi|351703545|gb|EHB06464.1| Retinoic acid receptor RXR-beta [Heterocephalus glaber]
Length = 520
Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 96/182 (52%), Gaps = 9/182 (4%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WAK +P F++LP DQVILL W+EL + + S+ + + L S H
Sbjct: 334 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHS 393
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V A + RVL ++ + R + +D E CL+A++LF + +GL + +VE L
Sbjct: 394 AGV---GAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVL 450
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+++ L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L
Sbjct: 451 REKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLM 510
Query: 177 DM 178
+M
Sbjct: 511 EM 512
>gi|417410382|gb|JAA51665.1| Putative retinoic acid receptor rxr-beta, partial [Desmodus
rotundus]
Length = 398
Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 95/182 (52%), Gaps = 9/182 (4%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WAK +P F++LP DQVILL W+EL + + S+ + + L S H
Sbjct: 212 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHS 271
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V A + RVL ++ + R + +D E CL+A++LF + +GL +VE L
Sbjct: 272 AGV---GAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSSPSEVEAL 328
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+++ L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L
Sbjct: 329 RERVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLM 388
Query: 177 DM 178
+M
Sbjct: 389 EM 390
>gi|55956943|emb|CAI11430.1| retinoid X receptor beta [Canis lupus familiaris]
Length = 458
Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 96/182 (52%), Gaps = 9/182 (4%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WAK +P F++LP DQVILL W+EL + + S+ + + L S H
Sbjct: 272 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHS 331
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V A + RVL ++ + R + +D E CL+A++LF + +GL + +VE L
Sbjct: 332 AGV---GAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVL 388
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+++ L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L
Sbjct: 389 REKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLM 448
Query: 177 DM 178
+M
Sbjct: 449 EM 450
>gi|195113207|ref|XP_002001159.1| GI22125 [Drosophila mojavensis]
gi|193917753|gb|EDW16620.1| GI22125 [Drosophila mojavensis]
Length = 450
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 103/211 (48%), Gaps = 41/211 (19%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLF-----NASEHVA 57
V W K++ +F LP DQ++LLEESW E F+L Q+ +P+ + LF N++ +
Sbjct: 242 VNWIKSVRAFTELPMPDQLLLLEESWKEFFILAMAQYLMPMNFAQLLFVYESENSNRDIV 301
Query: 58 AVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK---------------- 101
+V A +V VL + + +D E+ CL+A+ LF+
Sbjct: 302 SV-------VAREVHAFQDVLNQLCHLNIDSTEYECLRAISLFRKSPPAASSTEDLANSS 354
Query: 102 -------------SETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQ 148
+E+RGL +S +V ++ + A+ L ++ HP QP RF LL + S
Sbjct: 355 ILTGSGSPNSSASAESRGLLESNKVASMHNDARNALHNYISRTHPNQPLRFQTLLGVVSL 414
Query: 149 CRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
+ S ++ +FF KT+ + ++ +L+ DMY
Sbjct: 415 MHKVSSFTIEELFFRKTIGDITIVRLISDMY 445
>gi|440909606|gb|ELR59495.1| Retinoic acid receptor RXR-beta [Bos grunniens mutus]
Length = 518
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 96/182 (52%), Gaps = 9/182 (4%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WAK +P F++LP DQVILL W+EL + + S+ + + L S H
Sbjct: 332 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHS 391
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V A + RVL ++ + R + +D E CL+A++LF + +GL + +VE L
Sbjct: 392 AGV---GAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVL 448
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+++ L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L
Sbjct: 449 REKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLM 508
Query: 177 DM 178
+M
Sbjct: 509 EM 510
>gi|417410882|gb|JAA51906.1| Putative retinoic acid receptor rxr-beta, partial [Desmodus
rotundus]
Length = 459
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 95/182 (52%), Gaps = 9/182 (4%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WAK +P F++LP DQVILL W+EL + + S+ + + L S H
Sbjct: 273 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHS 332
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V A + RVL ++ + R + +D E CL+A++LF + +GL +VE L
Sbjct: 333 AGV---GAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSSPSEVEAL 389
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+++ L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L
Sbjct: 390 RERVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLM 449
Query: 177 DM 178
+M
Sbjct: 450 EM 451
>gi|221043908|dbj|BAH13631.1| unnamed protein product [Homo sapiens]
Length = 347
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 96/182 (52%), Gaps = 9/182 (4%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WAK +P F++LP DQVILL W+EL + + S+ + + L S H
Sbjct: 161 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHS 220
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V A + RVL ++ + R + +D E CL+A++LF + +GL + +VE L
Sbjct: 221 AGV---GAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVL 277
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+++ L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L
Sbjct: 278 REKVYASLETYCKQKYPEQQGRFAKLLLRLPAPRSIGLKCLEHLFFFKLIGDTPIDTFLM 337
Query: 177 DM 178
+M
Sbjct: 338 EM 339
>gi|327315356|ref|NP_001192143.1| retinoic acid receptor RXR-beta isoform 1 [Mus musculus]
gi|74198206|dbj|BAE35275.1| unnamed protein product [Mus musculus]
Length = 524
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 96/182 (52%), Gaps = 9/182 (4%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WAK +P F++LP DQVILL W+EL + + S+ + + L S H
Sbjct: 338 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHS 397
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V A + RVL ++ + R + +D E CL+A++LF + +GL + +VE L
Sbjct: 398 AGV---GAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGEVEIL 454
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+++ L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L
Sbjct: 455 REKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLM 514
Query: 177 DM 178
+M
Sbjct: 515 EM 516
>gi|393715097|ref|NP_001257330.1| retinoic acid receptor RXR-beta isoform 1 [Homo sapiens]
gi|168277536|dbj|BAG10746.1| retinoic acid receptor RXR-beta [synthetic construct]
gi|325495561|gb|ADZ17386.1| retinoid X nuclear receptor beta [Homo sapiens]
gi|410222102|gb|JAA08270.1| retinoid X receptor, beta [Pan troglodytes]
gi|410263018|gb|JAA19475.1| retinoid X receptor, beta [Pan troglodytes]
gi|410295526|gb|JAA26363.1| retinoid X receptor, beta [Pan troglodytes]
gi|410330371|gb|JAA34132.1| retinoid X receptor, beta [Pan troglodytes]
Length = 537
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 96/182 (52%), Gaps = 9/182 (4%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WAK +P F++LP DQVILL W+EL + + S+ + + L S H
Sbjct: 351 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHS 410
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V A + RVL ++ + R + +D E CL+A++LF + +GL + +VE L
Sbjct: 411 AGV---GAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVL 467
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+++ L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L
Sbjct: 468 REKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLM 527
Query: 177 DM 178
+M
Sbjct: 528 EM 529
>gi|124431283|gb|ABN11290.1| ultraspiracle protein [Myzus persicae]
Length = 267
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 98/182 (53%), Gaps = 7/182 (3%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK++P F LP DQV+LL W+EL + S+ + + L V
Sbjct: 81 VEWAKHIPHFKNLPLGDQVLLLRAGWNELMIAAFSHRSISVKDGIVLATG----LTVDRD 136
Query: 63 KASQTAADV---RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
A Q + RVL ++ + R +G+D E CL+ ++LF ++GL+ +V+ L+D+
Sbjct: 137 SAHQAGVEAIFDRVLTELVAKMRDMGMDRTELGCLRTIILFNPGSKGLQSVNEVQVLRDK 196
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
V L ++ RT HP +P RF +LLL R+I ++H+FF K + ++ ++ L ++
Sbjct: 197 VYVALEEYCRTTHPEEPGRFAKLLLRLPSLRSIGLKCLEHLFFYKLIGDSPIDTFLMEVL 256
Query: 180 KN 181
++
Sbjct: 257 ES 258
>gi|281338473|gb|EFB14057.1| hypothetical protein PANDA_002281 [Ailuropoda melanoleuca]
Length = 536
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 96/182 (52%), Gaps = 9/182 (4%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WAK +P F++LP DQVILL W+EL + + S+ + + L S H
Sbjct: 350 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHS 409
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V A + RVL ++ + R + +D E CL+A++LF + +GL + +VE L
Sbjct: 410 AGV---GAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVL 466
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+++ L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L
Sbjct: 467 REKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLM 526
Query: 177 DM 178
+M
Sbjct: 527 EM 528
>gi|190336859|gb|AAI62302.1| Retinoid x receptor, beta b [Danio rerio]
gi|190337908|gb|AAI62301.1| Retinoid x receptor, beta b [Danio rerio]
Length = 422
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 97/189 (51%), Gaps = 13/189 (6%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WAK +P F+ LP DQVILL W+EL + S+ + + L S H
Sbjct: 229 VEWAKRVPHFSELPLDDQVILLRAGWNELLIAAFSHRSISVKDEILLATGLHVPKESTHN 288
Query: 57 AAVPN--GKASQTAADV-----RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKD 109
V + S +A+V RVL ++ + R + +D E CL+A+VLF + +GL
Sbjct: 289 LGVEAFFDRESSHSAEVGALFDRVLTELVCKMRDMQMDKTELGCLRAIVLFNPDAKGLTS 348
Query: 110 SLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANT 169
S +VE L+++ L + + +P Q RF +LLL R+I ++H+FF K + NT
Sbjct: 349 SSEVELLREKVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGNT 408
Query: 170 SMEKLLCDM 178
++ L +M
Sbjct: 409 PIDTFLMEM 417
>gi|326932850|ref|XP_003212525.1| PREDICTED: nuclear receptor subfamily 0 group B member 2-like
[Meleagris gallopavo]
Length = 268
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 95/184 (51%), Gaps = 7/184 (3%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPL-LESSPLFNASEHVAAVP 60
+ + KNLPSF LP DQ++LL+ W LFLL +Q ++ + +P + E +
Sbjct: 68 TISFMKNLPSFHLLPRGDQLLLLDSCWVPLFLLGLVQETVTFEVMETPAPSMLEKILLDG 127
Query: 61 NGKASQTA------ADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVE 114
K + A V+ L L F + + P E+A LK +LF + GL SL +E
Sbjct: 128 QSKRQEPEWTQPMLAAVQWLQCSLNTFWSLDLSPKEYAYLKGAILFNPDVPGLTASLYIE 187
Query: 115 NLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKL 174
+LQ +A+ L + VR HP RF +LL+TS ++IP A + +FF + N + +L
Sbjct: 188 SLQREAERALQEVVRILHPEDQDRFALILLITSTLKSIPPALITDLFFRPVIGNADIVEL 247
Query: 175 LCDM 178
+ DM
Sbjct: 248 IVDM 251
>gi|226316409|gb|ACO44668.1| retinoid X receptor isoform 1 [Crangon crangon]
Length = 405
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 97/182 (53%), Gaps = 13/182 (7%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLN------AIQWSLPLLESSPLFNASEHV 56
V+WAK++P F LP +DQV+LL+ W+EL + ++ + L + +S H
Sbjct: 219 VEWAKHIPHFTDLPVQDQVVLLKAGWNELLIAAFSHRSIGVKDGIVLATGLVVHRSSAHQ 278
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V T D RVL+ ++ + + + +D E CL+++VLF + RGL VE L
Sbjct: 279 AGV------GTIFD-RVLSELVAKMKEMKMDKTELGCLRSIVLFNPDARGLTSCNDVEIL 331
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+++ L ++ RT +P +P RF +LLL R+I ++++F K + +T ++ L
Sbjct: 332 REKVYAALEEYTRTSYPHEPGRFAKLLLRLPALRSIGLKCLEYLFLFKLIGDTPLDNYLM 391
Query: 177 DM 178
M
Sbjct: 392 KM 393
>gi|226316411|gb|ACO44669.1| retinoid X receptor isoform 2 [Crangon crangon]
Length = 400
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 97/182 (53%), Gaps = 13/182 (7%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLN------AIQWSLPLLESSPLFNASEHV 56
V+WAK++P F LP +DQV+LL+ W+EL + ++ + L + +S H
Sbjct: 214 VEWAKHIPHFTDLPVQDQVVLLKAGWNELLIAAFSHRSIGVKDGIVLATGLVVHRSSAHQ 273
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V T D RVL+ ++ + + + +D E CL+++VLF + RGL VE L
Sbjct: 274 AGV------GTIFD-RVLSELVAKMKEMKMDKTELGCLRSIVLFNPDARGLTSCNDVEIL 326
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+++ L ++ RT +P +P RF +LLL R+I ++++F K + +T ++ L
Sbjct: 327 REKVYAALEEYTRTSYPHEPGRFAKLLLRLPALRSIGLKCLEYLFLFKLIGDTPLDNYLM 386
Query: 177 DM 178
M
Sbjct: 387 KM 388
>gi|149471499|ref|XP_001514355.1| PREDICTED: nuclear receptor subfamily 0 group B member 2-like
[Ornithorhynchus anatinus]
Length = 262
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 96/186 (51%), Gaps = 10/186 (5%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQ--WSLPLLES-SPLFNASEHVAAV 59
V + KNLPSF LP DQ++LL W+ LFLL Q + + E+ +P + + +
Sbjct: 73 VSFMKNLPSFRLLPDGDQLLLLHSCWAPLFLLGLAQDAVTFEVAETPAPALSMLQRILLD 132
Query: 60 PNGK-------ASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQ 112
G+ A T A + L L FR + + P E+A LK V LF + GL+ S
Sbjct: 133 GRGRPRREPETARPTLAAAQRLQCCLHTFRGLDLGPKEYAYLKGVFLFNPDVPGLRTSPA 192
Query: 113 VENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSME 172
+E+LQ +AQ L + + HP RF R+LL+ S ++IP A V+ +FF + + +
Sbjct: 193 IESLQCEAQRALREELLPRHPEDQGRFARVLLVASTLKSIPPALVRDLFFRPVIGDADIT 252
Query: 173 KLLCDM 178
LL +M
Sbjct: 253 GLLAEM 258
>gi|71040954|gb|AAZ20368.1| RXRa nuclear hormone receptor [Gecarcinus lateralis]
Length = 436
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 96/182 (52%), Gaps = 13/182 (7%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLN------AIQWSLPLLESSPLFNASEHV 56
V+WAK++P F LP DQV+LL+ W+EL + + ++ + L + +S H
Sbjct: 248 VEWAKHIPHFTDLPIEDQVVLLKAGWNELLIASFSHRSMGVEDGIVLATGLVIHRSSAHQ 307
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V A RVL+ ++ + + + +D E CL+++VLF + +GL VE L
Sbjct: 308 AGV-------GAIFDRVLSELVAKMKEMKIDKTELGCLRSIVLFNPDAKGLNCCNDVEIL 360
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+++ L ++ RT +P +P RF +LLL R+I ++++F K + +T ++ L
Sbjct: 361 REKVYAALEEYTRTTYPDEPGRFAKLLLRLPALRSIGLKCLEYLFLFKLIGDTPLDSYLM 420
Query: 177 DM 178
M
Sbjct: 421 KM 422
>gi|71040960|gb|AAZ20371.1| RXRd nuclear hormone receptor [Gecarcinus lateralis]
Length = 432
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 96/182 (52%), Gaps = 13/182 (7%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLN------AIQWSLPLLESSPLFNASEHV 56
V+WAK++P F LP DQV+LL+ W+EL + + ++ + L + +S H
Sbjct: 244 VEWAKHIPHFTDLPIEDQVVLLKAGWNELLIASFSHRSMGVEDGIVLATGLVIHRSSAHQ 303
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V A RVL+ ++ + + + +D E CL+++VLF + +GL VE L
Sbjct: 304 AGV-------GAIFDRVLSELVAKMKEMKIDKTELGCLRSIVLFNPDAKGLNCCNDVEIL 356
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+++ L ++ RT +P +P RF +LLL R+I ++++F K + +T ++ L
Sbjct: 357 REKVYAALEEYTRTTYPDEPGRFAKLLLRLPALRSIGLKCLEYLFLFKLIGDTPLDSYLM 416
Query: 177 DM 178
M
Sbjct: 417 KM 418
>gi|154936862|dbj|BAF75376.1| retinoid X receptor [Marsupenaeus japonicus]
Length = 442
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 97/184 (52%), Gaps = 17/184 (9%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLN------AIQWSLPLLESSPLFNASEHV 56
V+WAK++P F LP DQVILL+ W+EL + + ++ + L + +S H
Sbjct: 256 VEWAKHIPHFTDLPVDDQVILLKAGWNELLIASFSHRSMGVKDGIVLATGLVVHRSSAHH 315
Query: 57 AAVPNGKASQTAADV--RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVE 114
A V D+ RVL+ ++ + + + +D E CL+++VLF + +GL +E
Sbjct: 316 AGV---------GDIFDRVLSELVAKMKEMKMDKTELGCLRSIVLFNPDVKGLSACDTIE 366
Query: 115 NLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKL 174
L+++ L ++ RT +P QP RF +LLL R+I ++++F K + +T ++
Sbjct: 367 VLREKVYATLEEYTRTSYPDQPGRFAKLLLRLPALRSIGLKCLEYLFLFKLLGDTPLDNY 426
Query: 175 LCDM 178
L M
Sbjct: 427 LMKM 430
>gi|226432209|gb|ACO55650.1| retinoid X receptor beta [Paralichthys olivaceus]
Length = 417
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 93/176 (52%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 235 VEWAKRIPHFSELQLDDQVILLRAGWNELLIASFSHRSISV-KDGILLATGLHVHRNSAH 293
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D +E CL+A++LF + +GL + +VE L+++
Sbjct: 294 SAGVGAIFDRVLTELVSKMRDMQMDKSELGCLRAIILFNPDAKGLSNPSEVELLRERVYA 353
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 354 SLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 409
>gi|432883656|ref|XP_004074314.1| PREDICTED: retinoic acid receptor RXR-beta-A [Oryzias latipes]
Length = 465
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 96/189 (50%), Gaps = 13/189 (6%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L S H
Sbjct: 269 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSISVKDGILLATGLHVHRNSAHS 328
Query: 57 AAVPN-------GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKD 109
A V A A RVL ++ + R + +D E CL+A++LF + +GL +
Sbjct: 329 AGVGAIFDRELAHNAEVGAIFERVLTELVSKMRDMQMDKTELGCLRAIILFNPDAKGLSN 388
Query: 110 SLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANT 169
S +VE L+++ L + + +P Q RF +LLL R+I ++H+FF K + +T
Sbjct: 389 SSEVELLRERVYASLETYCKHKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDT 448
Query: 170 SMEKLLCDM 178
++ L +M
Sbjct: 449 PIDTFLMEM 457
>gi|71040956|gb|AAZ20369.1| RXRb nuclear hormone receptor [Gecarcinus lateralis]
Length = 431
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 96/182 (52%), Gaps = 13/182 (7%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLN------AIQWSLPLLESSPLFNASEHV 56
V+WAK++P F LP DQV+LL+ W+EL + + ++ + L + +S H
Sbjct: 243 VEWAKHIPHFTDLPIEDQVVLLKAGWNELLIASFSHRSMGVEDGIVLATGLVIHRSSAHQ 302
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V A RVL+ ++ + + + +D E CL+++VLF + +GL VE L
Sbjct: 303 AGV-------GAIFDRVLSELVAKMKEMKIDKTELGCLRSIVLFNPDAKGLNCCNDVEIL 355
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+++ L ++ RT +P +P RF +LLL R+I ++++F K + +T ++ L
Sbjct: 356 REKVYAALEEYTRTTYPDEPGRFAKLLLRLPALRSIGLKCLEYLFLFKLIGDTPLDSYLM 415
Query: 177 DM 178
M
Sbjct: 416 KM 417
>gi|121484110|gb|ABM54395.1| NR2E3 [Pan paniscus]
Length = 76
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/76 (60%), Positives = 58/76 (76%)
Query: 106 GLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKT 165
GLKD VE LQDQ+QVML+QH + HHP+QP RFG+LLL+ R I + R++ +FF KT
Sbjct: 1 GLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKT 60
Query: 166 VANTSMEKLLCDMYKN 181
+ NT MEKLLCDM+KN
Sbjct: 61 IGNTPMEKLLCDMFKN 76
>gi|125772581|ref|XP_001357592.1| GA12521 [Drosophila pseudoobscura pseudoobscura]
gi|195159108|ref|XP_002020424.1| GL13521 [Drosophila persimilis]
gi|54637324|gb|EAL26726.1| GA12521 [Drosophila pseudoobscura pseudoobscura]
gi|194117193|gb|EDW39236.1| GL13521 [Drosophila persimilis]
Length = 454
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 43/212 (20%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLF------NASEHV 56
V W K++ +F LP DQ++LLEESW E F+L Q+ +P+ + LF N E V
Sbjct: 246 VNWIKSVRAFTELPMPDQLMLLEESWKEFFILAMAQYLMPMNFAQLLFVYEAENNNREIV 305
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK--------------- 101
V + +V VL + + VD E+ CL+A+ LF+
Sbjct: 306 GMV--------SREVHAFQDVLNQLCHMNVDSTEYECLRAISLFRKSPPAASSTEDLANS 357
Query: 102 --------------SETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTS 147
+E+RGL +S +V + + A+ L ++ HP QP RF LL + S
Sbjct: 358 SILTGSGSPNSSASAESRGLLESGKVAAMHNDARSALHNYISRTHPNQPLRFQTLLGVVS 417
Query: 148 QCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
+ S ++ +FF KT+ + ++ +L+ DMY
Sbjct: 418 MMHKVSSFTIEELFFRKTIGDITIVRLISDMY 449
>gi|170065994|ref|XP_001868087.1| nuclear receptor [Culex quinquefasciatus]
gi|167862693|gb|EDS26076.1| nuclear receptor [Culex quinquefasciatus]
Length = 377
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/182 (37%), Positives = 99/182 (54%), Gaps = 24/182 (13%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
+AVKWAK++PSF LP DQ ILLEESW+ELF++ A QW LP+ + +A P
Sbjct: 219 LAVKWAKSVPSFLQLPTADQKILLEESWAELFVITAAQWGLPI--------DCDFIARNP 270
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+ K L+ ++Q+F L VD E ACLKA++LF+S+ L ++ LQDQ
Sbjct: 271 SAKK---------LHAIIQQFTLARVDYREAACLKALILFRSDHASLFSGHEILLLQDQT 321
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARV-QHIFFAKTVANTSMEKLLCDMY 179
+L H R G LLL+ + + +V Q + F KT+ ++E+LL D+
Sbjct: 322 INLL------HEKCGGVRLGHLLLLLPGIKAAANGKVLQEMLFRKTIGEVAIERLLVDLM 375
Query: 180 KN 181
K
Sbjct: 376 KT 377
>gi|28628006|gb|AAO18151.1| USP-RXR [Lithobius forficatus]
Length = 305
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 91/167 (54%), Gaps = 2/167 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK++P F LP DQV LL W+EL + S+ + +S L + +
Sbjct: 141 VEWAKHIPHFTELPIEDQVTLLRAGWNELLIAAFSHRSVNVKDSIVLATGLQIHRTDAHS 200
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
T D RVL ++ + R + +D E CL+A++LF + +GL+ S +E+L+++
Sbjct: 201 AGVGTIFD-RVLTELVAKMREMKMDRTELGCLRAIILF-NPVKGLRSSQVIESLRERVYA 258
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANT 169
L ++ + H+P +P RF +LLL R+I ++H+FF K + +T
Sbjct: 259 TLEEYCKQHYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDT 305
>gi|195390875|ref|XP_002054093.1| tailless [Drosophila virilis]
gi|194152179|gb|EDW67613.1| tailless [Drosophila virilis]
Length = 450
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 101/211 (47%), Gaps = 41/211 (19%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLF-----NASEHVA 57
V W K++ +F LP DQ++LLEESW E F+L Q+ +P+ + LF NA+ +
Sbjct: 242 VNWIKSVRAFTELPMPDQLLLLEESWKEFFILAMAQYLMPMNFAQLLFVYESENANREIV 301
Query: 58 AVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK---------------- 101
+ A +V VL + + +D E+ CL+A+ LF+
Sbjct: 302 TI-------VAREVHAFQDVLNQLCHLNIDSTEYECLRAISLFRKSPPAASSTEDLANSS 354
Query: 102 -------------SETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQ 148
+E+RGL +S +V + + A+ L ++ HP QP RF LL + +
Sbjct: 355 ILTGSGSPNSSASAESRGLLESSKVAAMHNDARNALHNYISRTHPNQPLRFQTLLGVVTL 414
Query: 149 CRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
+ S ++ +FF KT+ + ++ +L+ DMY
Sbjct: 415 MHKVSSFTIEELFFRKTIGDITIVRLISDMY 445
>gi|383848789|ref|XP_003700030.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like [Megachile
rotundata]
Length = 427
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 90/179 (50%), Gaps = 7/179 (3%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V WAK++P F +LP DQV+LL W+EL + + S+ + + L V
Sbjct: 246 VAWAKHIPHFTSLPLEDQVLLLRAGWNELLIASFSHRSIDVKDGIVLATG----ITVHRN 301
Query: 63 KASQTAADV---RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
A Q RVL+ ++ + R + +D E CL++++LF E RGLK +V L+++
Sbjct: 302 SAQQAGVGTIFDRVLSELVSKMREMKMDRTELGCLRSIILFNPEVRGLKSIQEVTLLREK 361
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + R P P RF +LLL R+I ++H+FF K + + ++ L +M
Sbjct: 362 IYAALEGYCRVAWPDDPGRFAKLLLRLPAIRSIGLKCLEHLFFFKMIGDVPIDDFLVEM 420
>gi|156145618|gb|ABU53622.1| ultraspiracle [Pyrrhocoris apterus]
Length = 256
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 77/145 (53%), Gaps = 7/145 (4%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F +LP DQV+LL W+ L + S+ + + L V
Sbjct: 116 VEWAKQIPHFVSLPIDDQVLLLRAGWNGLMIAGFSHRSIGVKDGIVLGPG----VTVSRN 171
Query: 63 KASQTAADV---RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
A Q D+ RVL ++ + R + +D AE CL+A++L+ E RGLK +VE L+++
Sbjct: 172 TADQAGVDIIFDRVLTELVSKMREMEMDKAELGCLRAIILYNPEVRGLKSVGEVEALREK 231
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLL 144
L +H R HP +P RF +LLL
Sbjct: 232 VYASLEEHTRLSHPDEPGRFAQLLL 256
>gi|68342537|gb|AAC32789.3| retinoid X receptor homolog [Uca pugilator]
Length = 465
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 96/182 (52%), Gaps = 13/182 (7%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLN------AIQWSLPLLESSPLFNASEHV 56
V+WAK++P F LP DQV+LL+ W+EL + + ++ + L + +S H
Sbjct: 277 VEWAKHIPHFTDLPIEDQVVLLKAGWNELLIASFSHRSMGVEDGIVLATGLVIHRSSAHQ 336
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V A RVL+ ++ + + + +D E CL+++VLF + +GL VE L
Sbjct: 337 AGV-------GAIFDRVLSELVAKMKEMKIDKTELGCLRSIVLFNPDAKGLNCVNDVEIL 389
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+++ L ++ RT +P +P RF +LLL R+I ++++F K + +T ++ L
Sbjct: 390 REKVYAALEEYTRTTYPDEPGRFAKLLLRLPALRSIGLKCLEYLFLFKLIGDTPLDSYLM 449
Query: 177 DM 178
M
Sbjct: 450 KM 451
>gi|47196001|emb|CAF94879.1| unnamed protein product [Tetraodon nigroviridis]
Length = 132
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 70/108 (64%)
Query: 71 VRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRT 130
+RV +++ +++ VD AE++C+KA+VLF ++ GL D VE LQ+++Q L ++VR
Sbjct: 10 IRVFQEQVEKLKVLHVDSAEYSCIKAIVLFTTDACGLSDVAHVEGLQEKSQCALEEYVRA 69
Query: 131 HHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
+P QP RFG+LLL R + SA ++ +FF + V T +E L+ DM
Sbjct: 70 QYPNQPNRFGKLLLRLPSLRTVSSAVIEQLFFIRLVGKTPIETLIRDM 117
>gi|70907499|emb|CAH69897.1| retinoid X receptor [Blattella germanica]
Length = 413
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 97/182 (53%), Gaps = 13/182 (7%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WAK++P F LP DQV+LL W+EL + S+ + + L S H
Sbjct: 231 VEWAKHIPHFTTLPLSDQVLLLRAGWNELLIAAFSHRSVEVKDGIVLATGLTVHRNSAHQ 290
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V A RVL ++ + R + +D E CL++V+LF + RGLK S +VE L
Sbjct: 291 AGV-------GAIFDRVLTELVAKMREMKMDKTELGCLRSVILFNPDVRGLKSSQEVELL 343
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+++ L ++ RT +P +P RF +LLL R+I ++++FF + + N +++ L
Sbjct: 344 REKVYAALEEYTRTTYPDEPGRFAKLLLRLPSLRSISLKCLEYLFFFRLIGNVPIDEFLM 403
Query: 177 DM 178
+M
Sbjct: 404 EM 405
>gi|6094487|sp|O16845.1|TLL_DROVI RecName: Full=Protein tailless; AltName: Full=Nuclear receptor
subfamily 2 group E member 2
gi|2440021|gb|AAB71370.1| tailless protein [Drosophila virilis]
Length = 450
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 100/211 (47%), Gaps = 41/211 (19%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLF-----NASEHVA 57
V W K++ +F LP DQ++LLEESW E F+L Q+ +P+ + LF NA+ +
Sbjct: 242 VNWIKSVRAFTELPMPDQLLLLEESWKEFFILAMAQYLMPMNFAQLLFVYESENANREIV 301
Query: 58 AVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK---------------- 101
+ A +V V R + +D E+ CL+A+ LF+
Sbjct: 302 TI-------VAREVHAFQAVPNRLCHLNIDSTEYECLRAISLFRKSPPAASSTEDLANSS 354
Query: 102 -------------SETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQ 148
+E+RGL +S +V + + A+ L ++ HP QP RF LL + +
Sbjct: 355 ILTGSGSPNSSASAESRGLLESSKVAAMHNDARNALHNYISRTHPNQPLRFQTLLGVVTL 414
Query: 149 CRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
+ S ++ +FF KT+ + ++ +L+ DMY
Sbjct: 415 MHKVSSFTIEELFFRKTIGDITIVRLISDMY 445
>gi|148230344|ref|NP_001080936.1| retinoid X receptor, beta [Xenopus laevis]
gi|840922|emb|CAA60792.1| retinoid X receptor beta [Xenopus laevis]
Length = 412
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 91/176 (51%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 230 VEWAKRIPHFSELALDDQVILLRAGWNELLIASFSHRSISV-KDGILLATGLHVHRNSAH 288
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + VE L+++
Sbjct: 289 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGDVEVLREKVYA 348
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 349 SLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 404
>gi|70907501|emb|CAH69898.1| retinoid X receptor [Blattella germanica]
Length = 436
Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 97/182 (53%), Gaps = 13/182 (7%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WAK++P F LP DQV+LL W+EL + S+ + + L S H
Sbjct: 254 VEWAKHIPHFTTLPLSDQVLLLRAGWNELLIAAFSHRSVEVKDGIVLATGLTVHRNSAHQ 313
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V A RVL ++ + R + +D E CL++V+LF + RGLK S +VE L
Sbjct: 314 AGV-------GAIFDRVLTELVAKMREMKMDKTELGCLRSVILFNPDVRGLKSSQEVELL 366
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+++ L ++ RT +P +P RF +LLL R+I ++++FF + + N +++ L
Sbjct: 367 REKVYAALEEYTRTTYPDEPGRFAKLLLRLPSLRSISLKCLEYLFFFRLIGNVPIDEFLM 426
Query: 177 DM 178
+M
Sbjct: 427 EM 428
>gi|374711677|gb|AEZ64359.1| retinoid X receptor isoform A short [Diploptera punctata]
Length = 437
Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 95/179 (53%), Gaps = 7/179 (3%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK++P F +LP DQV+LL W+EL + S+ + + L V
Sbjct: 254 VEWAKHIPHFTSLPLSDQVLLLRAGWNELLIAAFSHRSVEVKDGIVLATG----LTVHRN 309
Query: 63 KASQTAADV---RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
A Q RVL ++ + R + +D E CL++++LF + RGLK S VE L+++
Sbjct: 310 SAHQAGVGAIFDRVLTELVAKMREMKMDKTELGCLRSIILFNPDVRGLKSSQDVEVLREK 369
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RT +P +P RF +LLL R+I ++++FF + + N +++ L +M
Sbjct: 370 VYAALEEYTRTTYPDEPGRFAKLLLRLPSLRSISLKCLEYLFFFRLIGNVPIDEFLMEM 428
>gi|410926023|ref|XP_003976478.1| PREDICTED: retinoic acid receptor RXR-beta-A-like isoform 2
[Takifugu rubripes]
Length = 463
Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 96/187 (51%), Gaps = 11/187 (5%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L S H
Sbjct: 269 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSISVKDGILLATGLHVHRNSAHS 328
Query: 57 AAVPNGKASQTAADV-----RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSL 111
A V A+V RVL ++ + R + +D E CL+A++LF + +GL +
Sbjct: 329 AGVGAIFDRAHNAEVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIILFNPDAKGLSNPS 388
Query: 112 QVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSM 171
+VE L+++ L + + +P Q RF +LLL R+I ++H+FF K + +T +
Sbjct: 389 EVELLRERVYASLEAYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 448
Query: 172 EKLLCDM 178
+ L +M
Sbjct: 449 DTFLMEM 455
>gi|374711679|gb|AEZ64360.1| retinoid X receptor isoform A long [Diploptera punctata]
Length = 449
Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 95/179 (53%), Gaps = 7/179 (3%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK++P F +LP DQV+LL W+EL + S+ + + L V
Sbjct: 266 VEWAKHIPHFTSLPLSDQVLLLRAGWNELLIAAFSHRSVEVKDGIVLATG----LTVHRN 321
Query: 63 KASQTAADV---RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
A Q RVL ++ + R + +D E CL++++LF + RGLK S VE L+++
Sbjct: 322 SAHQAGVGAIFDRVLTELVAKMREMKMDKTELGCLRSIILFNPDVRGLKSSQDVEVLREK 381
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RT +P +P RF +LLL R+I ++++FF + + N +++ L +M
Sbjct: 382 VYAALEEYTRTTYPDEPGRFAKLLLRLPSLRSISLKCLEYLFFFRLIGNVPIDEFLMEM 440
>gi|18859343|ref|NP_571313.1| retinoic acid receptor RXR-beta-B [Danio rerio]
gi|52783418|sp|Q90417.1|RXRBB_DANRE RecName: Full=Retinoic acid receptor RXR-beta-B; AltName:
Full=Nuclear receptor subfamily 2 group B member 2-B;
AltName: Full=Retinoic acid receptor RXR-delta; AltName:
Full=Retinoid X receptor beta-B; AltName: Full=Retinoid
X receptor delta
gi|1046297|gb|AAC59721.1| retinoid X receptor delta [Danio rerio]
gi|1583306|prf||2120366A retinoid X receptor:ISOTYPE=delta
Length = 422
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 97/189 (51%), Gaps = 13/189 (6%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WAK +P F+ +P DQVILL W+EL + S+ + + L S H
Sbjct: 229 VEWAKRVPHFSDVPLDDQVILLRAGWNELLIAAFSHRSISVKDEILLATGLHVPKESTHN 288
Query: 57 AAVPN--GKASQTAADV-----RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKD 109
V + S +A+V RVL ++ + R + +D E CL+A+VLF + +GL
Sbjct: 289 LGVEAFFDRESSHSAEVGALFDRVLTELVCKMRDMQMDKTELGCLRAIVLFNPDAKGLTS 348
Query: 110 SLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANT 169
S +VE L+++ L + + +P Q RF +LLL R+I ++H+FF K + NT
Sbjct: 349 SSEVELLREKVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGNT 408
Query: 170 SMEKLLCDM 178
++ L +M
Sbjct: 409 PIDTFLMEM 417
>gi|348541131|ref|XP_003458040.1| PREDICTED: retinoic acid receptor RXR-beta-A isoform 2 [Oreochromis
niloticus]
Length = 462
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 96/187 (51%), Gaps = 11/187 (5%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L S H
Sbjct: 268 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSISVKDGILLATGLHVHRNSAHS 327
Query: 57 AAVPNGKASQTAADV-----RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSL 111
A V A+V RVL ++ + R + +D E CL+A++LF + +GL +
Sbjct: 328 AGVGAIFDRAHNAEVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIILFNPDAKGLSNPS 387
Query: 112 QVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSM 171
+VE L+++ L + + +P Q RF +LLL R+I ++H+FF K + +T +
Sbjct: 388 EVELLRERVYASLEAYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 447
Query: 172 EKLLCDM 178
+ L +M
Sbjct: 448 DTFLMEM 454
>gi|374711683|gb|AEZ64362.1| retinoid X receptor isoform B long [Diploptera punctata]
Length = 427
Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 97/182 (53%), Gaps = 13/182 (7%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WAK++P F +LP DQV+LL W+EL + S+ + + L S H
Sbjct: 244 VEWAKHIPHFTSLPLSDQVLLLRAGWNELLIAAFSHRSVEVKDGIVLATGLTVHRNSAHQ 303
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V A RVL ++ + R + +D E CL++++LF + RGLK S VE L
Sbjct: 304 AGV-------GAIFDRVLTELVAKMREMKMDKTELGCLRSIILFNPDVRGLKSSQDVEVL 356
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+++ L ++ RT +P +P RF +LLL R+I ++++FF + + N +++ L
Sbjct: 357 REKVYAALEEYTRTTYPDEPGRFAKLLLRLPSLRSISLKCLEYLFFFRLIGNVPIDEFLM 416
Query: 177 DM 178
+M
Sbjct: 417 EM 418
>gi|374711681|gb|AEZ64361.1| retinoid X receptor isoform B short [Diploptera punctata]
Length = 415
Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 95/179 (53%), Gaps = 7/179 (3%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK++P F +LP DQV+LL W+EL + S+ + + L V
Sbjct: 232 VEWAKHIPHFTSLPLSDQVLLLRAGWNELLIAAFSHRSVEVKDGIVLATG----LTVHRN 287
Query: 63 KASQTAADV---RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
A Q RVL ++ + R + +D E CL++++LF + RGLK S VE L+++
Sbjct: 288 SAHQAGVGAIFDRVLTELVAKMREMKMDKTELGCLRSIILFNPDVRGLKSSQDVEVLREK 347
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RT +P +P RF +LLL R+I ++++FF + + N +++ L +M
Sbjct: 348 VYAALEEYTRTTYPDEPGRFAKLLLRLPSLRSISLKCLEYLFFFRLIGNVPIDEFLMEM 406
>gi|16797878|gb|AAL29197.1|AF323684_1 nuclear receptor AmNR4 isoform B [Acropora millepora]
Length = 408
Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 103/196 (52%), Gaps = 18/196 (9%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWS--LPLLESSPLFNAS----E 54
+ V WA+++ +F L DQ++LL+ +WS+LF+L Q S PL SPL + + E
Sbjct: 212 LTVDWAQSIQAFRCLENSDQLVLLQSTWSDLFMLGVAQCSSSFPL---SPLLSLAAFHME 268
Query: 55 HVAAVPNGKASQTAA---DVRVLNGVLQRFRLV------GVDPAEFACLKAVVLFKSETR 105
H + N + Q ++ D +++ ++ L+ +D E+A LKA+VLF S+
Sbjct: 269 HRDSESNAQNRQPSSVNSDPNLIDKIVTVKELLFSLEKLELDSVEYAFLKAIVLFNSDCL 328
Query: 106 GLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKT 165
LK+S QVE +QD+A L +V HP P RF ++LL R + + +FF+
Sbjct: 329 NLKNSKQVERIQDKAHCALKNYVENKHPNFPERFAKILLRLPATRMLTQRAAEELFFSPL 388
Query: 166 VANTSMEKLLCDMYKN 181
+ +E ++ ++ N
Sbjct: 389 IGTVKIESIMTNIISN 404
>gi|16797876|gb|AAL29196.1|AF323683_1 nuclear receptor AmNR4 isoform A [Acropora millepora]
Length = 416
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 103/196 (52%), Gaps = 18/196 (9%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWS--LPLLESSPLFNAS----E 54
+ V WA+++ +F L DQ++LL+ +WS+LF+L Q S PL SPL + + E
Sbjct: 220 LTVDWAQSIQAFRCLENSDQLVLLQSTWSDLFMLGVAQCSSSFPL---SPLLSLAAFHME 276
Query: 55 HVAAVPNGKASQTAA---DVRVLNGVLQRFRLV------GVDPAEFACLKAVVLFKSETR 105
H + N + Q ++ D +++ ++ L+ +D E+A LKA+VLF S+
Sbjct: 277 HRDSESNAQNRQPSSVNSDPNLIDKIVTVKELLFSLEKLELDSVEYAFLKAIVLFNSDCL 336
Query: 106 GLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKT 165
LK+S QVE +QD+A L +V HP P RF ++LL R + + +FF+
Sbjct: 337 NLKNSKQVERIQDKAHCALKNYVENKHPNFPERFAKILLRLPATRMLTQRAAEELFFSPL 396
Query: 166 VANTSMEKLLCDMYKN 181
+ +E ++ ++ N
Sbjct: 397 IGTVKIESIMTNIISN 412
>gi|215539467|gb|AAI69986.1| Rxrb-a protein [Xenopus laevis]
Length = 445
Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 91/176 (51%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 263 VEWAKRIPHFSELALDDQVILLRAGWNELLIASFSHRSISVKDGI-LLATGLHVHRNSAH 321
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + VE L+++
Sbjct: 322 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGDVEVLREKVYA 381
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 382 SLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 437
>gi|83318203|gb|AAI08461.1| Rxrb-a protein [Xenopus laevis]
Length = 458
Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 91/176 (51%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 276 VEWAKRIPHFSELALDDQVILLRAGWNELLIASFSHRSISVKDGI-LLATGLHVHRNSAH 334
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + VE L+++
Sbjct: 335 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGDVEVLREKVYA 394
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 395 SLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 450
>gi|390354650|ref|XP_784246.3| PREDICTED: retinoic acid receptor RXR [Strongylocentrotus
purpuratus]
Length = 479
Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 94/182 (51%), Gaps = 13/182 (7%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSEL----FLLNAIQWSLPLLESSPLF--NASEHV 56
V+WAK +P F LP DQV LL W+EL F +IQ +L ++ L S H
Sbjct: 298 VEWAKRIPHFTELPLDDQVTLLRAGWNELLIAAFSHRSIQVKDGILLATGLHVHRNSAHS 357
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V T D RVL ++ + R + +D E CL+A+VLF + + L +VE L
Sbjct: 358 AGV------GTIFD-RVLTELVAKMREMKMDKTELGCLRAIVLFNPDAKNLTSVQKVEEL 410
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+++ L ++ R + +P RF +LLL R+I ++H+FF K + +T ++ L
Sbjct: 411 REKVYASLEEYCRNQYTDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLM 470
Query: 177 DM 178
+M
Sbjct: 471 EM 472
>gi|71051362|gb|AAH99003.1| Rxrb-A-prov protein, partial [Xenopus laevis]
Length = 458
Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 91/176 (51%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 276 VEWAKRIPHFSELALDDQVILLRAGWNELLIASFSHRSISVKDGI-LLATGLHVHRNSAH 334
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + VE L+++
Sbjct: 335 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGDVEVLREKVYA 394
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 395 SLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 450
>gi|327176811|gb|AEA29832.1| retinoid X receptor splice variant [Homarus americanus]
Length = 410
Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 97/182 (53%), Gaps = 13/182 (7%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLN------AIQWSLPLLESSPLFNASEHV 56
V+WAK++P F LP DQV+LL+ W+EL + + ++ + L + +S H
Sbjct: 224 VEWAKHIPHFTDLPVEDQVVLLKAGWNELLIASFSHRSMGVEDGIVLATGLVVHRSSAHQ 283
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V T D RVL+ ++ + + + +D E CL+++VL+ + +GL VE L
Sbjct: 284 AGV------GTIFD-RVLSELVAKMKEMKMDKTELGCLRSIVLYNPDAKGLTCCNDVEIL 336
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+++ L ++ RT +P +P RF +LLL R+I ++++F K + +T ++ L
Sbjct: 337 REKVYAALEEYTRTSYPEEPGRFAKLLLRLPALRSIGLKCLEYLFLFKLIGDTPLDNYLM 396
Query: 177 DM 178
M
Sbjct: 397 KM 398
>gi|49114890|gb|AAH73179.1| Rxrb-A-prov protein, partial [Xenopus laevis]
Length = 451
Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 91/176 (51%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 269 VEWAKRIPHFSELALDDQVILLRAGWNELLIASFSHRSISVKDGI-LLATGLHVHRNSAH 327
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + VE L+++
Sbjct: 328 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGDVEVLREKVYA 387
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 388 SLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 443
>gi|343113489|gb|AEL87703.1| retinoid X receptor alpha [Strongylocentrotus nudus]
Length = 481
Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 94/182 (51%), Gaps = 13/182 (7%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSEL----FLLNAIQWSLPLLESSPLF--NASEHV 56
V+WAK +P F LP DQV LL W+EL F +IQ +L ++ L S H
Sbjct: 300 VEWAKRIPHFTELPLDDQVTLLRAGWNELLIAAFSHRSIQVKDGILLATGLHVHRNSAHS 359
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V T D RVL ++ + R + +D E CL+A+VLF + + L +VE L
Sbjct: 360 AGV------GTIFD-RVLTELVAKMREMKMDKTELGCLRAIVLFNPDAKNLTSVQKVEEL 412
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+++ L ++ R + +P RF +LLL R+I ++H+FF K + +T ++ L
Sbjct: 413 REKVYASLEEYCRNQYTDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLM 472
Query: 177 DM 178
+M
Sbjct: 473 EM 474
>gi|4337458|gb|AAD18132.1| retinoid X receptor beta [Sus scrofa domesticus]
Length = 187
Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 86/164 (52%), Gaps = 1/164 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + L HV
Sbjct: 25 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDV-RDGILLATGLHVHRNSAH 83
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 84 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYA 143
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTV 166
L + + +P Q RF +LLL R+I ++H+FF K +
Sbjct: 144 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLI 187
>gi|17864126|ref|NP_524596.1| tailless [Drosophila melanogaster]
gi|135913|sp|P18102.1|TLL_DROME RecName: Full=Protein tailless; AltName: Full=Nuclear receptor
subfamily 2 group E member 2
gi|158604|gb|AAA28936.1| tailless (tll) protein [Drosophila melanogaster]
gi|2440022|gb|AAB71371.1| tailless protein [Drosophila melanogaster]
gi|7301986|gb|AAF57091.1| tailless [Drosophila melanogaster]
gi|66571248|gb|AAY51589.1| IP01133p [Drosophila melanogaster]
gi|220943320|gb|ACL84203.1| tll-PA [synthetic construct]
gi|220953302|gb|ACL89194.1| tll-PA [synthetic construct]
Length = 452
Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 101/211 (47%), Gaps = 41/211 (19%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLF-----NASEHVA 57
V W K++ +F LP DQ++LLEESW E F+L Q+ +P+ + LF NA+ +
Sbjct: 244 VNWIKSVRAFTELPMPDQLLLLEESWKEFFILAMAQYLMPMNFAQLLFVYESENANREIM 303
Query: 58 AVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK---------------- 101
+ +V VL + + +D E+ CL+A+ LF+
Sbjct: 304 GM-------VTREVHAFQEVLNQLCHLNIDSTEYECLRAISLFRKSPPSASSTEDLANSS 356
Query: 102 -------------SETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQ 148
+E+RGL +S +V + + A+ L +++ HP+QP RF LL +
Sbjct: 357 ILTGSGSPNSSASAESRGLLESGKVAAMHNDARSALHNYIQRTHPSQPMRFQTLLGVVQL 416
Query: 149 CRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
+ S ++ +FF KT+ + ++ +L+ DMY
Sbjct: 417 MHKVSSFTIEELFFRKTIGDITIVRLISDMY 447
>gi|195575179|ref|XP_002105557.1| GD21550 [Drosophila simulans]
gi|194201484|gb|EDX15060.1| GD21550 [Drosophila simulans]
Length = 452
Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 101/211 (47%), Gaps = 41/211 (19%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLF-----NASEHVA 57
V W K++ +F LP DQ++LLEESW E F+L Q+ +P+ + LF NA+ +
Sbjct: 244 VNWIKSVRAFTELPMPDQLLLLEESWKEFFILAMAQYLMPMNFAQLLFVYESENANREIM 303
Query: 58 AVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK---------------- 101
+ +V VL + + +D E+ CL+A+ LF+
Sbjct: 304 GM-------VTREVHAFQEVLNQLCHLNIDSTEYECLRAISLFRKSPPSASSTEDLANSS 356
Query: 102 -------------SETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQ 148
+E+RGL +S +V + + A+ L +++ HP+QP RF LL +
Sbjct: 357 ILTGSGSPNSSASAESRGLLESGKVAAMHNDARSALHNYIQRTHPSQPMRFQTLLGVVQL 416
Query: 149 CRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
+ S ++ +FF KT+ + ++ +L+ DMY
Sbjct: 417 MHKVSSFTIEELFFRKTIGDITIVRLISDMY 447
>gi|194765110|ref|XP_001964670.1| GF22927 [Drosophila ananassae]
gi|190614942|gb|EDV30466.1| GF22927 [Drosophila ananassae]
Length = 456
Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 101/211 (47%), Gaps = 41/211 (19%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLF-----NASEHVA 57
V W K++ +F LP DQ++LLEESW E F+L Q+ +P+ + LF NA+ +
Sbjct: 248 VNWIKSVRAFTELPMPDQLMLLEESWKEFFILAMAQYLMPMNFAQLLFVYESENANREIM 307
Query: 58 AVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK---------------- 101
+ +V VL + + +D E+ CL+A+ LF+
Sbjct: 308 GM-------VTREVHAFQDVLNQLCHLNIDSTEYECLRAISLFRKSPPAASSTEDLANSS 360
Query: 102 -------------SETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQ 148
+E++GL +S +V + + A+ L +++ HPAQP RF LL +
Sbjct: 361 ILTGSGSPNSSASAESKGLLESGKVAAMHNDARSALHNYIQRTHPAQPLRFQTLLGVVQL 420
Query: 149 CRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
+ S ++ +FF KT+ + ++ +L+ DMY
Sbjct: 421 MHKVSSFTIEELFFRKTIGDITIVRLISDMY 451
>gi|341869840|gb|AEK99013.1| FLAGNvUSPDE [synthetic construct]
Length = 264
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 94/182 (51%), Gaps = 7/182 (3%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F +LP DQV+LL W+EL + S+ + E L + V
Sbjct: 80 VEWAKQIPHFTSLPIEDQVLLLRAGWNELLIAGFSHRSIGVKEKIVLGSG----VTVCRN 135
Query: 63 KASQTAADV---RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
A Q D R L ++ + R + +D AE CL+ ++L+ E RGL+ +VE L+++
Sbjct: 136 TAHQAGVDTIFDRALTELVSKMREMKMDKAELGCLRTIILYNPEVRGLRSVGEVEALREK 195
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
L ++ R+ HP +P RF +LLL R+I ++ +FF + + + ++ L M
Sbjct: 196 VYASLEEYTRSTHPEEPGRFAKLLLRLPSLRSIGLKCLEPLFFYRVLHDIPIDTFLLQML 255
Query: 180 KN 181
++
Sbjct: 256 ES 257
>gi|305690676|gb|ADM64635.1| ultraspiracle protein [Bactrocera dorsalis]
Length = 453
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 102/198 (51%), Gaps = 28/198 (14%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLES---------------S 47
V++A+ +P FA L DQV+LL+ W+EL L N S+ L+S S
Sbjct: 250 VEYARKMPHFAELQREDQVLLLKAGWNELLLANVAWCSIDSLDSDYATSGGHDTSSGRRS 309
Query: 48 PL---------FNASEHV-AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAV 97
P+ N S H +A+ G A T D R+L+ + + + + +D +E +CLKA+
Sbjct: 310 PIRQPQQLFLNHNFSYHRNSAIKAGVA--TIFD-RILSELSVKMKRLNIDRSELSCLKAI 366
Query: 98 VLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARV 157
+LF + RGLK ++E ++Q L +H RT HP +RF +LLL R+I +
Sbjct: 367 ILFNPDLRGLKGRNEIEVCREQVYACLDEHCRTEHPGDDSRFAQLLLRLPALRSISLKCL 426
Query: 158 QHIFFAKTVANTSMEKLL 175
H+FF + + + +++L
Sbjct: 427 DHLFFFRIMGDKQLDQLF 444
>gi|16580817|dbj|BAB71759.1| retinoid X receptor gamma [Paralichthys olivaceus]
Length = 293
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 90/170 (52%), Gaps = 1/170 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 124 VEWAKRIPHFSELQLDDQVILLRAGWNELLIASFSHRSISV-KDGILLATGLHVHRNSAH 182
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D +E CL+A++LF + +GL + +VE L+++
Sbjct: 183 SAGVGAIFDRVLTELVSKMRDMQMDKSELGCLRAIILFNPDAKGLSNPSEVELLRERVYA 242
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSME 172
L + + +P Q RF +LLL R+I ++H+FF K + +T ++
Sbjct: 243 SLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 292
>gi|291222082|ref|XP_002731047.1| PREDICTED: hepatocyte nuclear factor 4, alpha-like [Saccoglossus
kowalevskii]
Length = 454
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 94/176 (53%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +PSF LP DQV LL E +L + SL + L N P
Sbjct: 151 VEWAKYIPSFCELPLDDQVALLRAHAGEHLVLGVAKRSLNYKDILLLGNDVIIPRHAPQL 210
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ S+ AA R+L+ +++ V +D EFACLKA+V F + +GL DS+++++L+ QAQ+
Sbjct: 211 EISRIAA--RILDELVKPLHDVQIDDHEFACLKAIVFFDPDAKGLSDSMKIKSLRYQAQI 268
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG +LL+ ++I ++ + FAK T ++ LL +M
Sbjct: 269 NLEDYINDRQYDSRGRFGEILLVLPSLQSITWHMIEQVQFAKLFGVTKIDNLLQEM 324
>gi|198470596|ref|XP_001355352.2| GA18146 [Drosophila pseudoobscura pseudoobscura]
gi|198145527|gb|EAL32409.2| GA18146 [Drosophila pseudoobscura pseudoobscura]
Length = 487
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 98/195 (50%), Gaps = 22/195 (11%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLN---------------------AIQWSL 41
V++A+ +P FA LP DQVILL+ +W+EL + N A +
Sbjct: 276 VEYARLMPHFAQLPLDDQVILLKAAWNELLIANVAWCSIVSLDDAMATGMGHDSAFERRS 335
Query: 42 PLLESSPLF-NASEHVAAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLF 100
P+L+ LF N S KA + R+L+ + + + + +D E ACLKA++L+
Sbjct: 336 PVLQPQQLFLNQSFSYHRNSAIKAGVSTIFDRILSELSVKMKRLNLDRRELACLKAIILY 395
Query: 101 KSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHI 160
+ RG+K+ ++E +++ L +H R HP RF +LLL R+I + H+
Sbjct: 396 NPDMRGIKNRAEIEICREKVYACLDEHCRVEHPGDDGRFAQLLLRLPALRSISLKCLDHL 455
Query: 161 FFAKTVANTSMEKLL 175
FF + +++ +E+L
Sbjct: 456 FFFRIISDRPLEELF 470
>gi|332023659|gb|EGI63885.1| Retinoic acid receptor RXR-alpha-A [Acromyrmex echinatior]
Length = 403
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 88/179 (49%), Gaps = 7/179 (3%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V WAK++P F +LP DQV LL W+EL + S+ +S L AAV
Sbjct: 222 VAWAKHIPHFTSLPVADQVHLLNAGWNELLIAAFSHRSIDTKDSIILTTG----AAVHRH 277
Query: 63 KASQTAADV---RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
A Q RV++ ++ + R + VD E CL++++LF + RG+K +V L+++
Sbjct: 278 SALQAGVVTIFDRVISELVSKMREMKVDKTELGCLRSIILFNPDVRGIKSIQEVSLLREK 337
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ R + P P RF +LLL R+I +H FF K + +E +M
Sbjct: 338 IYAALEEYTRVNCPDDPGRFAKLLLRLPSIRSIGLKSAEHQFFYKLIGEVCVENFFAEM 396
>gi|71559109|gb|AAZ38141.1| USP/RXR [Chimarra marginata]
Length = 330
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 101/199 (50%), Gaps = 22/199 (11%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQW-SLPLLES---SPLFNASEHVAA 58
V WA+ LP F L DQV+LL+ SW+EL ++ AI W S+ LE+ + N +
Sbjct: 130 VDWARCLPHFNRLQLSDQVLLLKSSWNELLII-AIAWRSIEYLENERENDNGNDKTNNKT 188
Query: 59 VPN------------GKASQTAADV-----RVLNGVLQRFRLVGVDPAEFACLKAVVLFK 101
+P + S A V R+L+ + + R + VD AE ACLKAV+LF
Sbjct: 189 IPTPQLMCLMPGMTLHRNSALLAGVGVMFDRILSELSLKMRQMRVDQAELACLKAVILFN 248
Query: 102 SETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIF 161
+ RG+K +++ ++D+ +L H RT + RF LLL R+I +H+F
Sbjct: 249 PDLRGVKGRQEIDAIRDKVYALLEDHCRTRRAGEEGRFASLLLRLPALRSISLKCFEHLF 308
Query: 162 FAKTVANTSMEKLLCDMYK 180
F + + S+E L ++++
Sbjct: 309 FFRLFGDVSIETCLLEVWQ 327
>gi|148362145|gb|ABQ59669.1| RXRB [Salmo salar]
Length = 428
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 97/189 (51%), Gaps = 13/189 (6%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WAK +P F+ L DQVILL W+EL + + S+ + + L S H
Sbjct: 232 VEWAKRVPHFSELAMDDQVILLRAGWNELLIASFSHRSISVKDGILLATGLHVHRNSAHS 291
Query: 57 AAVPN--GKASQTAADV-----RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKD 109
A V + S A+V RVL ++ + R + +D E CL+A++LF + +GL
Sbjct: 292 AGVGVIFDRESAHNAEVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIILFNPDAKGLSS 351
Query: 110 SLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANT 169
S +VE L+++ L + + +P Q RF +LLL R+I ++H+FF K + +T
Sbjct: 352 SSEVELLREKVYASLESYCKHRYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDT 411
Query: 170 SMEKLLCDM 178
++ L +M
Sbjct: 412 PIDTFLMEM 420
>gi|296485043|tpg|DAA27158.1| TPA: COUP transcription factor 1 [Bos taurus]
Length = 352
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 75/121 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 231 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 290
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D+ +E+LQ+++Q
Sbjct: 291 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQ 350
Query: 122 V 122
Sbjct: 351 C 351
>gi|195505298|ref|XP_002099444.1| GE10907 [Drosophila yakuba]
gi|194185545|gb|EDW99156.1| GE10907 [Drosophila yakuba]
Length = 452
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 100/211 (47%), Gaps = 41/211 (19%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLF-----NASEHVA 57
V W K++ +F LP DQ++LLEESW E F+L Q+ +P+ + LF NA+ +
Sbjct: 244 VNWIKSVRAFTELPMPDQLLLLEESWKEFFILAMAQYLMPMNFAQLLFVYESENANREIM 303
Query: 58 AVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK---------------- 101
+ +V VL + + +D E+ CL+A+ LF+
Sbjct: 304 GM-------VTREVHAFQEVLNQLCHLNIDSTEYECLRAISLFRKSPPSASSTEDLANSS 356
Query: 102 -------------SETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQ 148
+E++GL +S +V + + A+ L +++ HP QP RF LL +
Sbjct: 357 ILTGSGSPNSSASAESKGLLESGKVAAMHNDARSALHNYIQRTHPTQPMRFQTLLGVVQM 416
Query: 149 CRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
+ S ++ +FF KT+ + ++ +L+ DMY
Sbjct: 417 MHKVSSFTIEELFFRKTIGDITIVRLISDMY 447
>gi|309747087|ref|NP_001026064.2| nuclear receptor subfamily 0 group B member 2 [Gallus gallus]
Length = 262
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 94/184 (51%), Gaps = 7/184 (3%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPL-LESSPLFNASEHVAAVP 60
+ + KNLPSF LP DQ++LL+ W LFLL +Q + + +P + E +
Sbjct: 62 TISFMKNLPSFHLLPRGDQLLLLDSCWVPLFLLGLVQEMVTFEVMETPAPSMLEKILLDG 121
Query: 61 NGKASQTA------ADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVE 114
K + A V+ L L F + + P E+A LK +LF + GL SL +E
Sbjct: 122 QSKRQEPEWTQPMLAAVQWLQCSLNTFWSLDLSPKEYAYLKGAILFNPDVPGLTASLYIE 181
Query: 115 NLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKL 174
+LQ +A+ L + V+ HP RF +LL+TS ++IP A + +FF + N + +L
Sbjct: 182 SLQREAERALQEVVQILHPKDQDRFALILLITSTLKSIPPALITDLFFRPIIGNADIVEL 241
Query: 175 LCDM 178
+ DM
Sbjct: 242 IVDM 245
>gi|62122587|dbj|BAD93255.1| RXRB [Oryzias latipes]
Length = 427
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 97/187 (51%), Gaps = 13/187 (6%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L S H
Sbjct: 235 VEWAKRIPHFSELPLDDQVILLR--WNELLIASFSHRSISVKDGILLATGLHVHRNSAHS 292
Query: 57 AAVPNGKASQTAADV-----RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSL 111
A V A+V RVL ++ + R + +D E CL+A++LF + +GL +S
Sbjct: 293 AGVGAIFDRAHNAEVGAIFERVLTELVSKMRDMQMDKTELGCLRAIILFNPDAKGLSNSS 352
Query: 112 QVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSM 171
+VE L+++ L + + +P Q RF +LLL R+I ++H+FF K + +T +
Sbjct: 353 EVELLRERVYASLETYCKHKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 412
Query: 172 EKLLCDM 178
+ L +M
Sbjct: 413 DTFLMEM 419
>gi|28628010|gb|AAO18153.1| USP-RXR [Leptopilina heterotoma]
Length = 283
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 92/172 (53%), Gaps = 11/172 (6%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK++P F +LP DQV LL W+EL + S+ + + L A +
Sbjct: 118 VEWAKHIPHFTSLPIEDQVRLLRAGWNELLIAAFSHRSIDVKDGIVL------AAGITVY 171
Query: 63 KASQTAADV-----RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQ 117
+ S A V RVL+ ++ + R + +D E CL+ ++LF E RGLK + +VE L+
Sbjct: 172 RNSAQQAGVGLIFERVLSELVSKMREMKMDKTELGCLRTIILFNPEVRGLKSAQEVELLR 231
Query: 118 DQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANT 169
++ L ++ RT P +P RF +LLL R+I ++H+FF K + +T
Sbjct: 232 EKVYAALEEYTRTTKPDEPGRFAKLLLRLPSLRSIGLKCLEHLFFFKLIGDT 283
>gi|18157523|dbj|BAB83838.1| RXRB [Oryzias latipes]
Length = 427
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 97/187 (51%), Gaps = 13/187 (6%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L S H
Sbjct: 235 VEWAKRIPHFSELPLDDQVILLR--WNELLIASFSHRSISVKDGILLATGLHVHRNSAHS 292
Query: 57 AAVPNGKASQTAADV-----RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSL 111
A V A+V RVL ++ + R + +D E CL+A++LF + +GL +S
Sbjct: 293 AGVGAIFDRAHNAEVGAIFERVLTELVSKMRDMQMDKTELGCLRAIILFNPDAKGLSNSS 352
Query: 112 QVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSM 171
+VE L+++ L + + +P Q RF +LLL R+I ++H+FF K + +T +
Sbjct: 353 EVELLRERVYASLETYCKHKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 412
Query: 172 EKLLCDM 178
+ L +M
Sbjct: 413 DTFLMEM 419
>gi|451774918|gb|AGF50212.1| ultraspiracle protein [Polyrhachis vicina]
Length = 424
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 89/169 (52%), Gaps = 8/169 (4%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V WAK++P F +LP DQ++LL+ W+EL + S+ + +S L + V
Sbjct: 241 VTWAKHIPHFTSLPVADQILLLKAGWNELLIAAFSYRSIEVKDSIVLATGT----TVHRN 296
Query: 63 KASQ----TAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQD 118
A Q T D RVL+ ++ + R + +D E CL++++LF + RGLK +V L++
Sbjct: 297 SAQQAGLITIFDDRVLSELVSKMREMKMDRTELGCLRSIILFNPDVRGLKSIQEVSMLRE 356
Query: 119 QAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVA 167
+ L ++ R P P RF +LLL R+I ++H+FF K +
Sbjct: 357 KIYAALEEYTRVSCPDDPGRFAKLLLRLPSIRSIGLKCLEHLFFFKLLG 405
>gi|409178665|gb|AFV25498.1| ultraspiracle, partial [Drosophila limbata]
Length = 442
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 97/194 (50%), Gaps = 21/194 (10%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLN--------------------AIQWSLP 42
V++A+ +P FA LP DQVILL+ +W+EL + N A + P
Sbjct: 248 VEYARLMPHFAQLPLDDQVILLKAAWNELLIANVAWRSIVSLDDALSGMGHDSAFERRSP 307
Query: 43 LLESSPLF-NASEHVAAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK 101
+L+ LF N S KA A R+L+ + + + + +D E +CLKA++L+
Sbjct: 308 VLQPQQLFLNQSFSYHRNSAIKAGVHAIFDRILSELSVKMKRLNLDRRELSCLKAIILYN 367
Query: 102 SETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIF 161
+ RG+K+ +E +++ L +H R HP RF +LLL R+I + H+F
Sbjct: 368 PDIRGIKNRADIELCREKVYACLDEHCRVEHPGDDGRFAQLLLRLPALRSISLKCLDHLF 427
Query: 162 FAKTVANTSMEKLL 175
F + +++ +E+L
Sbjct: 428 FFRIISDRPLEELF 441
>gi|225001482|gb|ACN78601.1| retinoid X receptor 1 [Fenneropenaeus chinensis]
Length = 442
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 96/184 (52%), Gaps = 17/184 (9%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLN------AIQWSLPLLESSPLFNASEHV 56
V+WAK++P F L DQVILL+ W+EL + + ++ + L + +S H
Sbjct: 256 VEWAKHIPHFTELSVDDQVILLKAGWNELLIASFSHRSMGVKDGIVLATGLVVHRSSAHH 315
Query: 57 AAVPNGKASQTAADV--RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVE 114
A V D+ RVL+ ++ + + + +D E CL+++VLF + +GL +E
Sbjct: 316 AGV---------GDIFDRVLSELVAKMKEMKMDKTELGCLRSIVLFNPDVKGLSACETIE 366
Query: 115 NLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKL 174
L+++ L ++ RT +P QP RF +LLL R+I ++++F K + +T ++
Sbjct: 367 VLREKVYATLEEYTRTSYPDQPGRFAKLLLRLPALRSIGLKCLEYLFLFKLLGDTPLDNY 426
Query: 175 LCDM 178
L M
Sbjct: 427 LMKM 430
>gi|312190941|gb|ADQ43369.1| ultraspiracle [Nezara viridula]
Length = 402
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 7/179 (3%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F +LP DQV+LL W+EL + S+ + E L + V
Sbjct: 218 VEWAKQIPHFTSLPIEDQVLLLRAGWNELLIAGFSHRSIGVKEKIVLGSG----VTVCRN 273
Query: 63 KASQTAADV---RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
A Q D R L ++ + R + +D AE CL+ ++L+ E RGL+ +VE L+++
Sbjct: 274 TAHQAGVDTIFDRALTELVSKMREMKMDKAELGCLRTIILYNPEVRGLRSVGEVEALREK 333
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ R+ HP +P RF +LLL R+I ++ +FF + + + ++ L M
Sbjct: 334 VYASLEEYTRSTHPEEPGRFAKLLLRLPSLRSIGLKCLEPLFFYRVLHDIPIDTFLLQM 392
>gi|225001484|gb|ACN78602.1| retinoid X receptor 2 [Fenneropenaeus chinensis]
Length = 437
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 96/184 (52%), Gaps = 17/184 (9%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLN------AIQWSLPLLESSPLFNASEHV 56
V+WAK++P F L DQVILL+ W+EL + + ++ + L + +S H
Sbjct: 251 VEWAKHIPHFTELSVDDQVILLKAGWNELLIASFSHRSMGVKDGIVLATGLVVHRSSAHH 310
Query: 57 AAVPNGKASQTAADV--RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVE 114
A V D+ RVL+ ++ + + + +D E CL+++VLF + +GL +E
Sbjct: 311 AGV---------GDIFDRVLSELVAKMKEMKMDKTELGCLRSIVLFNPDVKGLSACETIE 361
Query: 115 NLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKL 174
L+++ L ++ RT +P QP RF +LLL R+I ++++F K + +T ++
Sbjct: 362 VLREKVYATLEEYTRTSYPDQPGRFAKLLLRLPALRSIGLKCLEYLFLFKLLGDTPLDNY 421
Query: 175 LCDM 178
L M
Sbjct: 422 LMKM 425
>gi|16797886|gb|AAL29201.1|AF323688_1 nuclear receptor AmNR8 [Acropora millepora]
Length = 379
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 94/187 (50%), Gaps = 15/187 (8%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWS--LPLLESSPLFNAS----E 54
+ V W +N+ +F L DQ++LL+ SWS+LF+L Q S PL SPL + E
Sbjct: 186 LTVDWTRNIQAFRTLETSDQLVLLQSSWSDLFMLGVAQCSSSFPL---SPLLTLAAVHME 242
Query: 55 HVAAVPNGKASQTAADVRVLNGVLQRFRLV------GVDPAEFACLKAVVLFKSETRGLK 108
H K++ D +L+ ++ L+ +D EFA LK++VLF + LK
Sbjct: 243 HKEGNEEQKSNGIMQDSNLLDKMMSIKELLFSLERLEMDLVEFAFLKSIVLFNPDCSSLK 302
Query: 109 DSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVAN 168
+ QVE LQ++A L Q+V HP P RF ++LL R + + +FF+ +
Sbjct: 303 NPQQVERLQEKAHRALKQYVENRHPNTPERFAKILLRLPATRMLTKRAAEELFFSPLIGA 362
Query: 169 TSMEKLL 175
+E ++
Sbjct: 363 VRIENIM 369
>gi|410130138|dbj|BAM63276.2| retinoid X receptor [Periplaneta americana]
Length = 416
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 93/180 (51%), Gaps = 14/180 (7%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WAK++P F +LP DQV+LL W+EL + S+ + + L S H
Sbjct: 231 VEWAKHIPHFTSLPLSDQVLLLRAGWNELLIAAFSHRSVEVKDGIVLATGLTVHRNSAHQ 290
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSET-RGLKDSLQVEN 115
A V T D RVL ++ + R + +D E CL++V+LF + RGLK +VE
Sbjct: 291 AGV------GTIFD-RVLTELVAKMREMKMDKTELVCLRSVILFNPDVVRGLKSRQEVEL 343
Query: 116 LQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLL 175
L+++ L ++ RT HP +P RF +LL R+I ++++FF + N +++
Sbjct: 344 LREKVYAALEEYTRTTHPDEPGRFAKLLPSLPSLRSISLKCLEYLFFFSLIGNVPIDEFF 403
>gi|24308520|ref|NP_571350.1| retinoic acid receptor RXR-beta-A [Danio rerio]
gi|1046299|gb|AAC59722.1| retinoid X receptor epsilon [Danio rerio]
gi|94733758|emb|CAK11471.1| retinoid x receptor, beta [Danio rerio]
gi|1583307|prf||2120366B retinoid X receptor:ISOTYPE=epsilon
Length = 438
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 96/189 (50%), Gaps = 13/189 (6%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WAK +P F+ L DQVILL W+EL + + S+ + + L S H
Sbjct: 242 VEWAKRIPHFSELSLDDQVILLRAGWNELLIASFSHRSITVKDGILLATGLHVHRNSAHS 301
Query: 57 AAVPN--GKASQTAADV-----RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKD 109
A V + S A+V RVL ++ + R + +D E CL+A++LF + +GL
Sbjct: 302 AGVGAIFDRESAHNAEVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIILFNPDAKGLSS 361
Query: 110 SLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANT 169
+VE L+++ L + + +P Q RF +LLL R+I ++H+FF K + +T
Sbjct: 362 PSEVELLREKVYASLEAYCKQRYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDT 421
Query: 170 SMEKLLCDM 178
++ L +M
Sbjct: 422 PIDTFLMEM 430
>gi|146147384|gb|ABQ01987.1| retinoid X receptor beta [Salmo salar]
gi|148362152|gb|ABQ59675.1| RXR [Salmo salar]
Length = 430
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 96/189 (50%), Gaps = 13/189 (6%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WAK +P F+ L DQVILL W+EL + + S+ + + L S H
Sbjct: 234 VEWAKRVPHFSELALDDQVILLRAGWNELLIASFSHRSISVKDGILLATGLHVHRNSAHS 293
Query: 57 AAVPN--GKASQTAADV-----RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKD 109
A V + S A+V RVL ++ + R + +D E CL+A++LF + +GL
Sbjct: 294 AGVGAIFDRESAHNAEVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIILFNPDAKGLSS 353
Query: 110 SLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANT 169
+VE L+++ L + + +P Q RF +LLL R+I ++H+FF K + +T
Sbjct: 354 PSEVELLREKVYASLESYCKQRYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDT 413
Query: 170 SMEKLLCDM 178
++ L +M
Sbjct: 414 PIDTFLMEM 422
>gi|347360576|emb|CCA61271.1| retinoid X receptor, isoform S [Lithobius peregrinus]
Length = 305
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 90/167 (53%), Gaps = 2/167 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK++P F LP DQV LL W+EL + S+ + +S L + +
Sbjct: 140 VEWAKHIPHFTELPIEDQVTLLRAGWNELLIAAFSHRSVNVKDSIVLATGLQIHRTDAHS 199
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
T D RVL ++ + R + +D E CL+A++LF + +GL+ S +E+L+++
Sbjct: 200 AGVGTIFD-RVLTELVAKMREMKMDRTELGCLRAIILF-NPVKGLRSSQVIESLRERVYA 257
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANT 169
L ++ + +P +P RF +LLL R+I ++H+FF K + +T
Sbjct: 258 ALEEYCKQQYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDT 304
>gi|409178667|gb|AFV25499.1| ultraspiracle, partial [Zaprionus tuberculatus]
Length = 461
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 96/194 (49%), Gaps = 21/194 (10%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLN--------------------AIQWSLP 42
V++A+ +P FA LP DQVILL+ +W+EL + N A + P
Sbjct: 261 VEYARLMPHFAQLPLDDQVILLKAAWNELLIANVAWCSIVSLDDALSGIGHDSAFERRSP 320
Query: 43 LLESSPLF-NASEHVAAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK 101
+L+ LF N S KA R+L+ + + + + +D E +CLKA++L+
Sbjct: 321 VLQPQQLFLNQSFSYHRNSALKAGVHTIFDRILSELSVKMKCLNLDRRELSCLKAIILYN 380
Query: 102 SETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIF 161
+ RG+K+ +E +++ L +H R HP RF +LLL R+I + H+F
Sbjct: 381 PDIRGIKNRADIEMCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSISLKCLDHLF 440
Query: 162 FAKTVANTSMEKLL 175
F + +++ +E+L
Sbjct: 441 FFRIISDRPLEELF 454
>gi|347360572|emb|CCA61269.1| retinoid X receptor, isoform L [Lithobius peregrinus]
Length = 326
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 90/167 (53%), Gaps = 2/167 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK++P F LP DQV LL W+EL + S+ + +S L + +
Sbjct: 161 VEWAKHIPHFTELPIEDQVTLLRAGWNELLIAAFSHRSVNVKDSIVLATGLQIHRTDAHS 220
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
T D RVL ++ + R + +D E CL+A++LF + +GL+ S +E+L+++
Sbjct: 221 AGVGTIFD-RVLTELVAKMREMKMDRTELGCLRAIILF-NPVKGLRSSQVIESLRERVYA 278
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANT 169
L ++ + +P +P RF +LLL R+I ++H+FF K + +T
Sbjct: 279 ALEEYCKQQYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDT 325
>gi|391334318|ref|XP_003741552.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Metaseiulus
occidentalis]
Length = 574
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 90/176 (51%), Gaps = 7/176 (3%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V WA+ +P F LP DQV L+++ W+EL + S+ + + L V
Sbjct: 394 VAWARMIPHFLTLPVEDQVALIKQGWNELLIAGFSHRSINVKDGIVLATG----LVVQRD 449
Query: 63 KASQTAADV---RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
A Q RVL ++ + R + +D E CL+A+VL+ E RGL+ +VE ++
Sbjct: 450 SAHQAGVGAIFDRVLAELVTKMRDIKMDKTELGCLRAIVLYNPEARGLRSVAEVEQFREG 509
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLL 175
+ L ++ R +P Q +RF +LLL R+I V+++FF K A+ ++++ L
Sbjct: 510 VYIALEEYTRMSYPDQNSRFPKLLLRLPALRSIGLKCVENLFFLKLSADATIDQFL 565
>gi|52783388|sp|Q7SYN5.1|RXRBA_DANRE RecName: Full=Retinoic acid receptor RXR-beta-A; AltName:
Full=Nuclear receptor subfamily 2 group B member 2-A;
AltName: Full=Retinoid X receptor beta-A
gi|32451843|gb|AAH54649.1| Rxrba protein [Danio rerio]
Length = 471
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 96/189 (50%), Gaps = 13/189 (6%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WAK +P F+ L DQVILL W+EL + + S+ + + L S H
Sbjct: 275 VEWAKRIPHFSELSLDDQVILLRAGWNELLIASFSHRSITVKDGILLATGLHVHRNSAHS 334
Query: 57 AAVPN--GKASQTAADV-----RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKD 109
A V + S A+V RVL ++ + R + +D E CL+A++LF + +GL
Sbjct: 335 AGVGAIFDRESAHNAEVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIILFNPDAKGLSS 394
Query: 110 SLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANT 169
+VE L+++ L + + +P Q RF +LLL R+I ++H+FF K + +T
Sbjct: 395 PSEVELLREKVYASLEAYCKQRYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDT 454
Query: 170 SMEKLLCDM 178
++ L +M
Sbjct: 455 PIDTFLMEM 463
>gi|195130249|ref|XP_002009565.1| GI15428 [Drosophila mojavensis]
gi|193908015|gb|EDW06882.1| GI15428 [Drosophila mojavensis]
Length = 484
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 100/195 (51%), Gaps = 23/195 (11%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSL--------------------P 42
V++A+ +P FA LP DQVILL+ +W+EL + N S+ P
Sbjct: 274 VEYARLMPHFAQLPLDDQVILLKAAWNELLIANVAWCSIESLDEAIAGVGHDSAFDRRSP 333
Query: 43 LLESSPLFNASEHVAAVPNG--KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLF 100
+L+ LF S+ + N KA A R+L+ + + + + +D E +CLKA++L+
Sbjct: 334 VLQPQQLF-LSQSFSYHRNSAIKAGVQAIFDRILSELSVKMKRLNLDRRELSCLKAIILY 392
Query: 101 KSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHI 160
+ RG+K+ +E+ +++ L +H R HP RF +LLL R+I + H+
Sbjct: 393 NPDIRGIKNREDIEHCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSISLKCLDHL 452
Query: 161 FFAKTVANTSMEKLL 175
FF + +++ +++L
Sbjct: 453 FFFRIISDRPLDELF 467
>gi|148234156|ref|NP_001081830.1| retinoid X receptor, beta [Xenopus laevis]
gi|685085|gb|AAC60748.1| xRXR beta [Xenopus laevis]
Length = 452
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 91/179 (50%), Gaps = 4/179 (2%)
Query: 3 VKWAKNLPSFAALP---FRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAV 59
V+WAK +P F+ LP DQVILL W+EL + + S+ + L HV
Sbjct: 267 VEWAKRIPHFSELPELPLDDQVILLRAGWNELLIASFSHRSISE-KDGILLATGLHVHRN 325
Query: 60 PNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
A A RVL ++ + R + +D E CL+A++LF + +GL + VE L+++
Sbjct: 326 SAHSAGVGAIFERVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGDVEVLREK 385
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 386 VYACLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 444
>gi|449082859|dbj|BAM83566.1| ultraspiracle, partial [Periplaneta americana]
Length = 414
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 93/180 (51%), Gaps = 14/180 (7%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WAK++P F +LP DQV+LL W+EL + S+ + + L S H
Sbjct: 241 VEWAKHIPHFTSLPLSDQVLLLRAGWNELLIAAFSHRSVEVKDGIVLATGLTVHRNSAHQ 300
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSET-RGLKDSLQVEN 115
A V T D RVL ++ + R + +D E CL++V+LF + RGLK +VE
Sbjct: 301 AGV------GTIFD-RVLTELVAKMREMKMDKTELVCLRSVILFNPDVVRGLKSRQEVEL 353
Query: 116 LQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLL 175
L+++ L ++ RT HP +P RF +LL R+I ++++FF + N +++
Sbjct: 354 LREKVYAALEEYTRTTHPDEPGRFAKLLPSLPSLRSISLKCLEYLFFFSLIGNVPIDEFF 413
>gi|449082861|dbj|BAM83567.1| ultraspiracle long isoform [Periplaneta americana]
Length = 441
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 93/180 (51%), Gaps = 14/180 (7%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WAK++P F +LP DQV+LL W+EL + S+ + + L S H
Sbjct: 256 VEWAKHIPHFTSLPLSDQVLLLRAGWNELLIAAFSHRSVEVKDGIVLATGLTVHRNSAHQ 315
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSET-RGLKDSLQVEN 115
A V T D RVL ++ + R + +D E CL++V+LF + RGLK +VE
Sbjct: 316 AGV------GTIFD-RVLTELVAKMREMKMDKTELVCLRSVILFNPDVVRGLKSRQEVEL 368
Query: 116 LQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLL 175
L+++ L ++ RT HP +P RF +LL R+I ++++FF + N +++
Sbjct: 369 LREKVYAALEEYTRTTHPDEPGRFAKLLPSLPSLRSISLKCLEYLFFFSLIGNVPIDEFF 428
>gi|347360574|emb|CCA61270.1| retinoid X receptor, isoform M [Lithobius peregrinus]
Length = 320
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 90/167 (53%), Gaps = 2/167 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK++P F LP DQV LL W+EL + S+ + +S L + +
Sbjct: 155 VEWAKHIPHFTELPIEDQVTLLRAGWNELLIAAFSHRSVNVKDSIVLATGLQIHRTDAHS 214
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
T D RVL ++ + R + +D E CL+A++LF + +GL+ S +E+L+++
Sbjct: 215 AGVGTIFD-RVLTELVAKMREMKMDRTELGCLRAIILF-NPVKGLRSSQVIESLRERVYA 272
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANT 169
L ++ + +P +P RF +LLL R+I ++H+FF K + +T
Sbjct: 273 ALEEYCKQQYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDT 319
>gi|94733756|emb|CAK11469.1| retinoid x receptor, beta [Danio rerio]
Length = 487
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 96/189 (50%), Gaps = 13/189 (6%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WAK +P F+ L DQVILL W+EL + + S+ + + L S H
Sbjct: 291 VEWAKRIPHFSELSLDDQVILLRAGWNELLIASFSHRSITVKDGILLATGLHVHRNSAHS 350
Query: 57 AAVPN--GKASQTAADV-----RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKD 109
A V + S A+V RVL ++ + R + +D E CL+A++LF + +GL
Sbjct: 351 AGVGAIFDRESAHNAEVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIILFNPDAKGLSS 410
Query: 110 SLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANT 169
+VE L+++ L + + +P Q RF +LLL R+I ++H+FF K + +T
Sbjct: 411 PSEVELLREKVYASLEAYCKQRYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDT 470
Query: 170 SMEKLLCDM 178
++ L +M
Sbjct: 471 PIDTFLMEM 479
>gi|358251516|gb|AEU04707.1| retinoid X receptor alpha [Lateolabrax japonicus]
Length = 440
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 85/160 (53%), Gaps = 1/160 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ ++ L HV
Sbjct: 281 VEWAKRIPHFSELLLDDQVILLRAGWNELLIASFSHRSI-AIKDGILLATGLHVHRNNAH 339
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 340 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPSEVEALREKVYA 399
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFF 162
L + + +P QP RF +LLL R+I ++H+FF
Sbjct: 400 SLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
>gi|195447730|ref|XP_002071344.1| GK25746 [Drosophila willistoni]
gi|194167429|gb|EDW82330.1| GK25746 [Drosophila willistoni]
Length = 483
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 96/194 (49%), Gaps = 21/194 (10%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLN--------------------AIQWSLP 42
V++A+ +P FA LP DQVILL+ +W+EL + N A + P
Sbjct: 271 VEYARLMPHFAQLPLDDQVILLKAAWNELLIANVAWCSIGSVDDVSSGMGHDSAFERRSP 330
Query: 43 LLESSPLF-NASEHVAAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK 101
+L+ LF N S KA + R+L+ + + + + +D E CLKA++L+
Sbjct: 331 VLQPQQLFLNQSFSYHRNSAIKAGVSTIFDRILSELSVKMKRLNLDRRELTCLKAIILYN 390
Query: 102 SETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIF 161
+ RG+K+ ++E +++ L +H R HP RF +LLL R+I + H+F
Sbjct: 391 PDIRGIKNRAEIEMCREKVYACLDEHCRQEHPGDDGRFAQLLLRLPALRSISLKCLDHLF 450
Query: 162 FAKTVANTSMEKLL 175
F + +++ +E L
Sbjct: 451 FFRIISDRPLEDLF 464
>gi|195046041|ref|XP_001992077.1| GH24408 [Drosophila grimshawi]
gi|193892918|gb|EDV91784.1| GH24408 [Drosophila grimshawi]
Length = 528
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 96/195 (49%), Gaps = 22/195 (11%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSL--------------------- 41
V++A+ +P F+ LP DQVILL+ +W+EL + N S+
Sbjct: 317 VEYARLMPHFSKLPLDDQVILLKAAWNELLIANVAWCSIESLDESLTGLGHGDSAFDRRS 376
Query: 42 PLLESSPLF-NASEHVAAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLF 100
P+L+ LF N S KA A R+L+ + + + + +D E ACLKA++L+
Sbjct: 377 PVLQPQQLFLNQSFSYHRNSAIKAGVHAIFDRILSELSVKMKRLNLDRRELACLKAIILY 436
Query: 101 KSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHI 160
+ RG+K+ VE +++ L +H R HP RF +LLL R+I + H+
Sbjct: 437 NPDIRGIKNRSDVELCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSISLKCLDHL 496
Query: 161 FFAKTVANTSMEKLL 175
FF + + + +E+L
Sbjct: 497 FFFRIICDKPLEELF 511
>gi|60892874|gb|AAX37292.1| nuclear receptor usp/RXR [Polistes fuscatus]
Length = 279
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 94/182 (51%), Gaps = 13/182 (7%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLN------AIQWSLPLLESSPLFNASEHV 56
V WAK++P F +LP DQV+LL W+EL + + I+ + L ++ +S
Sbjct: 98 VTWAKHIPHFTSLPLEDQVLLLRGGWNELLIASFSHRSIGIKDGIVLATGITVYRSSAQQ 157
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V T D VL+ ++ + R + +D E CL++++LF + RGLK +V L
Sbjct: 158 AGVG------TIFD-HVLSELVTKMRDMKMDKTELGCLRSIILFNPDVRGLKSMQEVSLL 210
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+++ L ++ R P RF +LLL R+I ++H+FF K + + +++ +
Sbjct: 211 REKIYAALEEYTRVSCPNDSGRFAKLLLRLPSIRSIGLKCLEHLFFYKLIGDVPIDEFIM 270
Query: 177 DM 178
++
Sbjct: 271 EL 272
>gi|28628002|gb|AAO18155.1| USP-RXR [unidentified wasp FB-2002]
Length = 285
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 93/176 (52%), Gaps = 19/176 (10%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK++P F +LP DQ +LL W+EL + S+ ++ L P G
Sbjct: 120 VEWAKHIPHFTSLPLEDQAMLLRAGWNELLIAAFSHRSVECIDGIVL----------PTG 169
Query: 63 ----KASQTAADV-----RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQV 113
+AS A V RVL+ ++ + R + +D E CL++++LF E RGLK + +V
Sbjct: 170 ITVHRASAQQAGVGAIFDRVLSELVAKMRDMEMDKTELGCLRSIILFNPEVRGLKSAQEV 229
Query: 114 ENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANT 169
E L+++ L ++ R P +P RF +LLL R+I ++H+FF K + +T
Sbjct: 230 ELLREKVYAALEEYTRIARPDEPGRFAKLLLRLPSLRSIGLKCLEHLFFFKLIGDT 285
>gi|409178681|gb|AFV25506.1| ultraspiracle, partial [Drosophila malerkotliana]
Length = 463
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 96/200 (48%), Gaps = 27/200 (13%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSL--------------------- 41
V++A+ +P FA LP DQVILL+ W+EL + N S+
Sbjct: 263 VEYARMMPHFAQLPLDDQVILLKAGWNELLIANVAWCSIVSLDDTMGGGGGGGGLSHDGS 322
Query: 42 -----PLLESSPLF-NASEHVAAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLK 95
P+L+ LF N S KA + R+L+ + + + + +D E CLK
Sbjct: 323 FDRRSPVLQPQQLFLNQSFSYHRNSAIKAGVSTIFDRILSELSVKMKRLNLDRRELTCLK 382
Query: 96 AVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSA 155
A++L+ + RG+K+ ++E +++ L +H R HP RF +LLL R+I
Sbjct: 383 AIILYNPDIRGIKNRAEIEMCREKVYACLDEHCRQEHPGDDGRFAQLLLRLPALRSISLK 442
Query: 156 RVQHIFFAKTVANTSMEKLL 175
+ H+FF + +++ +E+L
Sbjct: 443 CLDHLFFFRIISDRPLEELF 462
>gi|1036801|gb|AAA93013.1| svp, partial [Schistocerca americana]
Length = 121
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 65/101 (64%)
Query: 78 LQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPA 137
+++ + + VD AE++CLKA+VLF ++ GL D +E LQ+++Q L ++ RT +P QP
Sbjct: 6 VEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVAHIEGLQEKSQCALEEYCRTQYPNQPT 65
Query: 138 RFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
RFG+LLL R + S ++ +FF + V T +E L+ DM
Sbjct: 66 RFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDM 106
>gi|405966658|gb|EKC31918.1| Nuclear receptor subfamily 2 group C member 2 [Crassostrea gigas]
Length = 707
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 96/181 (53%), Gaps = 6/181 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHV-AAV 59
+++ W +++P+F L Q IL++ SWSELF L Q + + S+ L H+ A+
Sbjct: 463 LSMHWTRSIPAFHVLSQEVQTILVKSSWSELFTLGLAQCAQSMSLSTILMAILNHLQTAL 522
Query: 60 PNGKASQTAADVRV-----LNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVE 114
K S + + L +Q + +D EFA LKA+VLF +T L ++ Q+E
Sbjct: 523 QQDKNSAERVKLVIDHILKLQNYIQSLEALQIDSEEFAYLKALVLFSPDTPSLPNAPQIE 582
Query: 115 NLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKL 174
+QD+AQ LA HVR HP+ P R +LLL ++ + ++ +FFA + + ++ +
Sbjct: 583 RVQDRAQRELANHVRQTHPSNPDRLAKLLLRLPALHSLSPSVMEELFFAGLIGSVQIDSI 642
Query: 175 L 175
+
Sbjct: 643 I 643
>gi|195397487|ref|XP_002057360.1| GJ16389 [Drosophila virilis]
gi|194147127|gb|EDW62846.1| GJ16389 [Drosophila virilis]
Length = 499
Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 97/194 (50%), Gaps = 21/194 (10%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLN--------------------AIQWSLP 42
V++A+ +P FA LP DQVILL+ +W+EL + N A + P
Sbjct: 289 VEYARLMPHFAQLPLDDQVILLKAAWNELLIANVAWCSIESLDDALAGIGHDSAFERRSP 348
Query: 43 LLESSPLF-NASEHVAAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK 101
+L+ LF N S KA A R+L+ + + + + +D E +CLKA++L+
Sbjct: 349 VLQPQQLFLNQSFSYHRNSAIKAGVHAIFDRILSELSVKMKRLNLDRRELSCLKAIILYN 408
Query: 102 SETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIF 161
+ RG+K+ +E +++ L +H R HP RF +LLL R+I + H+F
Sbjct: 409 PDIRGIKNRADIELCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSISLKCLDHLF 468
Query: 162 FAKTVANTSMEKLL 175
F + +++ +++L
Sbjct: 469 FFRIISDRPLDELF 482
>gi|440904694|gb|ELR55168.1| Retinoic acid receptor RXR-alpha, partial [Bos grunniens mutus]
Length = 485
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 92/180 (51%), Gaps = 5/180 (2%)
Query: 3 VKWAKNLPSFAALPFRDQVILLE----ESWSELFLLNAIQWSLPLLESSPLFNASEHVAA 58
V+WAK +P F+ LP DQ + W+EL + + S+ ++ L HV
Sbjct: 299 VEWAKRIPHFSELPLDDQTTVTLCPALAGWNELLIASFSHRSI-AVKDGILLATGLHVHR 357
Query: 59 VPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQD 118
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L++
Sbjct: 358 NSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALRE 417
Query: 119 QAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
+ L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 418 KVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 477
>gi|171362733|dbj|BAG14373.1| retinoid X receptor alpha homolog [Lepisosteus platyrhinchus]
Length = 288
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 80/150 (53%), Gaps = 1/150 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L HV
Sbjct: 140 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAV-KDGILLATGLHVHRNSAH 198
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 199 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPSEVEALREKVYA 258
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNI 152
L + + +P QP RF +LLL R+I
Sbjct: 259 SLEAYCKQKYPEQPGRFAKLLLRLPALRSI 288
>gi|6754886|ref|NP_035980.1| nuclear receptor subfamily 0 group B member 2 [Mus musculus]
gi|9978747|sp|Q62227.1|NR0B2_MOUSE RecName: Full=Nuclear receptor subfamily 0 group B member 2;
AltName: Full=Orphan nuclear receptor SHP; AltName:
Full=Small heterodimer partner
gi|1374949|gb|AAB59732.1| shp [Mus musculus]
gi|18043452|gb|AAH19540.1| Nuclear receptor subfamily 0, group B, member 2 [Mus musculus]
gi|33860557|gb|AAQ55057.1| nuclear receptor subfamily 0 group B member 2 [Mus musculus]
gi|33860559|gb|AAQ55058.1| nuclear receptor subfamily 0 group B member 2 [Mus musculus]
gi|148698113|gb|EDL30060.1| nuclear receptor subfamily 0, group B, member 2, isoform CRA_b [Mus
musculus]
Length = 260
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 92/187 (49%), Gaps = 11/187 (5%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSL----------PLLESSPLFNA 52
V + +NLPSF LP DQ LLE W LFLL Q ++ +L+ L A
Sbjct: 70 VAFLRNLPSFCHLPHEDQRRLLECCWGPLFLLGLAQDAVTFEVAEAPVPSILKKILLEEA 129
Query: 53 SEHV-AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSL 111
S A P+ + + A V+ L L+ F + + P E+A LK +LF + GL+ S
Sbjct: 130 SSGTQGAQPSDRPQPSLAAVQWLQRCLESFWSLELGPKEYAYLKGTILFNPDVPGLRASC 189
Query: 112 QVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSM 171
+ +LQ +A L + + +PA R R+LLM S +NIP + +FF + + +
Sbjct: 190 HIAHLQQEAHWALCEVLEPWYPASQGRLARILLMASTLKNIPGTLLVDLFFRPIMGDVDI 249
Query: 172 EKLLCDM 178
+LL DM
Sbjct: 250 TELLEDM 256
>gi|313230320|emb|CBY08024.1| unnamed protein product [Oikopleura dioica]
Length = 420
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 97/180 (53%), Gaps = 7/180 (3%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
++W K +P F L D+V L++ +W+E+ + + S+ E L +E + G
Sbjct: 245 IEWTKMIPQFETLKTDDRVYLVQSAWNEITIADIAHRSMEF-EDKLLIGKNE---ILTRG 300
Query: 63 KASQTAADV---RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
+A+ T D+ RV+ ++ + + + +D E CLKA++L+ + + L+D + VE+L+++
Sbjct: 301 QATSTNVDIIFGRVITELVYKMKEMKLDRTELGCLKAIILYNPDVKQLQDPILVEDLREK 360
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
L + + +P QP RF +LLL R+I ++ +F KTV +T +L+ D +
Sbjct: 361 VYATLEAYSKQKYPEQPGRFAKLLLRLPALRSIGLKCLESMFLFKTVGDTPQIELVRDCF 420
>gi|56608614|gb|AAW02952.1| ultraspiracle [Melipona scutellaris]
Length = 427
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 89/179 (49%), Gaps = 7/179 (3%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V WAK++P F +LP DQV+LL W+EL + + S+ + + L V
Sbjct: 246 VAWAKHIPHFTSLPLEDQVLLLRAGWNELLIASFSHRSIDVKDGIVLATG----ITVHRN 301
Query: 63 KASQTAADV---RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
A Q RVL+ ++ + R + +D E CL++++LF E RGLK +V L+++
Sbjct: 302 SAQQAGVGTIFDRVLSELVSKMREMKMDRTELGCLRSIILFNPEVRGLKSIQEVTLLREK 361
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + R P RF +LLL R+I ++++FF K + + ++ L +M
Sbjct: 362 IYAALEGYCRVAWPDDAGRFAKLLLRLPAIRSIGLKCLEYLFFFKMIGDVPIDDFLVEM 420
>gi|77632652|gb|ABB00308.1| ultraspiracle protein [Scaptotrigona depilis]
Length = 427
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 89/179 (49%), Gaps = 7/179 (3%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V WAK++P F +LP DQV+LL W+EL + + S+ + + L V
Sbjct: 246 VAWAKHIPHFTSLPLEDQVLLLRAGWNELLIASFSHRSIDVKDGIVLATG----ITVHRN 301
Query: 63 KASQTAADV---RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
A Q RVL+ ++ + R + +D E CL++++LF E RGLK +V L+++
Sbjct: 302 SAQQAGVGTIFDRVLSELVSKMREMKMDRTELGCLRSIILFNPEVRGLKSIQEVTLLREK 361
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + R P RF +LLL R+I ++++FF K + + ++ L +M
Sbjct: 362 IYAALEGYCRVAWPDDAGRFAKLLLRLPAIRSIGLKCLEYLFFFKMIGDVPIDDFLVEM 420
>gi|409178663|gb|AFV25497.1| ultraspiracle, partial [Drosophila funebris]
Length = 433
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 100/197 (50%), Gaps = 27/197 (13%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLN--------------------AIQWSLP 42
V++A+ +P FA LP DQVILL+ +W+EL + N A + P
Sbjct: 233 VEYARLMPHFAQLPLDDQVILLKAAWNELLIANVAWCSIVSLDDALSGMGHDSAFERRSP 292
Query: 43 LLESSPLF---NASEHV-AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVV 98
+L+ LF N S H +A+ G T D R+L+ + + + + +D E +CLKA++
Sbjct: 293 VLQPQQLFLNQNFSYHRNSAIKAG--VHTIFD-RILSELSVKMKRLNLDRRELSCLKAII 349
Query: 99 LFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQ 158
L+ + RG+K+ ++E +++ L +H R HP RF +LLL R+I +
Sbjct: 350 LYNPDIRGIKNRAEIELCREKVYACLDEHCRVEHPGDDGRFAQLLLRLPALRSISLKCLD 409
Query: 159 HIFFAKTVANTSMEKLL 175
H+FF ++ +E+L
Sbjct: 410 HLFFFHINSDRPLEELF 426
>gi|340719093|ref|XP_003397991.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like isoform 1
[Bombus terrestris]
gi|350396161|ref|XP_003484462.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like isoform 1
[Bombus impatiens]
Length = 427
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 89/179 (49%), Gaps = 7/179 (3%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V WAK++P F +LP DQV+LL W+EL + + S+ + + L V
Sbjct: 246 VAWAKHIPHFTSLPLEDQVLLLRAGWNELLIASFSHRSIDVKDGIVLATG----ITVHRN 301
Query: 63 KASQTAADV---RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
A Q RVL+ ++ + R + +D E CL++++LF E RGLK +V L+++
Sbjct: 302 SAQQAGVGTIFDRVLSELVSKMREMKMDRTELGCLRSIILFNPEVRGLKSIQEVTLLREK 361
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + R P RF +LLL R+I ++++FF K + + ++ L +M
Sbjct: 362 IYAALEGYCRVAWPDDAGRFAKLLLRLPAIRSIGLKCLEYLFFFKMIGDVPIDDFLVEM 420
>gi|291241519|ref|XP_002740657.1| PREDICTED: Orphan nuclear receptor NR6A1, putative-like
[Saccoglossus kowalevskii]
Length = 404
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 86/174 (49%), Gaps = 34/174 (19%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
++K A+++ +F L F DQ++LLE+ W ELFLL+A W + L F S AA
Sbjct: 262 SIKRARSVQTFQTLSFSDQILLLEDCWGELFLLHAAYWPVDLATLIVQFQGSADTAAG-- 319
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ F LK V FK GL ++ QVE LQDQAQ
Sbjct: 320 ---------------------------SGFDSLK--VNFK---EGLGNTQQVEFLQDQAQ 347
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLL 175
++LAQ+V + P PARFG+LLL + R S ++ +FF KT+ +E +
Sbjct: 348 LILAQYVNSKTPQNPARFGKLLLTLASLRTYKSEIIEELFFRKTIGKVPIEAIF 401
>gi|340719095|ref|XP_003397992.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like isoform 2
[Bombus terrestris]
gi|350396164|ref|XP_003484463.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like isoform 2
[Bombus impatiens]
Length = 405
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 89/179 (49%), Gaps = 7/179 (3%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V WAK++P F +LP DQV+LL W+EL + + S+ + + L V
Sbjct: 224 VAWAKHIPHFTSLPLEDQVLLLRAGWNELLIASFSHRSIDVKDGIVLATG----ITVHRN 279
Query: 63 KASQTAADV---RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
A Q RVL+ ++ + R + +D E CL++++LF E RGLK +V L+++
Sbjct: 280 SAQQAGVGTIFDRVLSELVSKMREMKMDRTELGCLRSIILFNPEVRGLKSIQEVTLLREK 339
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + R P RF +LLL R+I ++++FF K + + ++ L +M
Sbjct: 340 IYAALEGYCRVAWPDDAGRFAKLLLRLPAIRSIGLKCLEYLFFFKMIGDVPIDDFLVEM 398
>gi|3098334|gb|AAC15588.1| retinoid X receptor [Amblyomma americanum]
Length = 400
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 91/182 (50%), Gaps = 14/182 (7%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WAK++P F LP D+++LL+ W+EL + S+ + + L S H
Sbjct: 220 VQWAKHIPHFEELPLEDRMVLLKAGWNELLIAAFSHRSVDVRDGIVLATGLVVQRHSAHG 279
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V A RVL ++ + R + +D E CL AVVLF E +GL+ +
Sbjct: 280 AGV-------GAIFDRVLTELVAKMREMKMDRTELGCLLAVVLFNPEAKGLR-TCPSGGP 331
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+ ++ L +H R +P QP RF +LLL R+I ++H+FF K + +T ++ L
Sbjct: 332 EGESVSALEEHCRQQYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDNFLL 391
Query: 177 DM 178
M
Sbjct: 392 SM 393
>gi|194768727|ref|XP_001966463.1| GF21986 [Drosophila ananassae]
gi|190617227|gb|EDV32751.1| GF21986 [Drosophila ananassae]
Length = 512
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 96/203 (47%), Gaps = 30/203 (14%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSL--------------------- 41
V++A+ +P FA LP DQVILL+ W+EL + N S+
Sbjct: 293 VEYARMMPHFAQLPLDDQVILLKAGWNELLIANVAWCSIVSLDDTMGGGGGGGGGGGLSH 352
Query: 42 --------PLLESSPLF-NASEHVAAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFA 92
P+L+ LF N S KA + R+L+ + + + + +D E
Sbjct: 353 DSSFDRRSPVLQPQQLFLNQSFSYHRNSAIKAGVSTIFDRILSELSVKMKRLNLDRRELT 412
Query: 93 CLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNI 152
CLKA++L+ + RG+K+ ++E +++ L +H R HP RF +LLL R+I
Sbjct: 413 CLKAIILYNPDIRGIKNRSEIEMCREKVYACLDEHCRQEHPGDDGRFAQLLLRLPALRSI 472
Query: 153 PSARVQHIFFAKTVANTSMEKLL 175
+ H+FF + +++ +E+L
Sbjct: 473 SLKCLDHLFFFRIISDRPLEELF 495
>gi|14994052|gb|AAK76400.1| retinoid X receptor beta [Scophthalmus maximus]
Length = 277
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 11/178 (6%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WAK +P F+ L DQVILL W+EL + + S+ + + L S H
Sbjct: 100 VEWAKRIPHFSELALDDQVILLRAGWNELLIASFSHRSISVKDGILLATGLHVHRNSAHS 159
Query: 57 AAVPNGKASQTAADV-----RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSL 111
A V A+V RVL ++ + R + +D E CL+A++LF + +GL +
Sbjct: 160 AGVGAIFDRAHNAEVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIILFNPDAKGLSNPS 219
Query: 112 QVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANT 169
+VE L+++ L + + +P Q RF +LLL R+I ++H+FF K + +T
Sbjct: 220 EVELLRERVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDT 277
>gi|58585210|ref|NP_001011634.1| ultraspiracle [Apis mellifera]
gi|8118613|gb|AAF73057.1|AF263459_1 ultraspiracle protein [Apis mellifera]
gi|30691980|gb|AAP33487.1| ultraspiracle protein [Apis mellifera]
Length = 427
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 89/179 (49%), Gaps = 7/179 (3%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V WAK++P F +LP DQV+LL W+EL + + S+ + + L V
Sbjct: 246 VAWAKHIPHFTSLPLEDQVLLLRAGWNELLIASFSHRSIDVKDGIVLATG----ITVHRN 301
Query: 63 KASQTAADV---RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
A Q RVL+ ++ + R + +D E CL++++LF E RGLK +V L+++
Sbjct: 302 SAQQAGVGTIFDRVLSELVSKMREMKMDRTELGCLRSIILFNPEVRGLKSIQEVTLLREK 361
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + R P RF +LLL R+I ++++FF K + + ++ L +M
Sbjct: 362 IYGALEGYCRVAWPDDAGRFAKLLLRLPAIRSIGLKCLEYLFFFKMIGDVPIDDFLVEM 420
>gi|409178671|gb|AFV25501.1| ultraspiracle, partial [Drosophila hydei]
Length = 443
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 99/195 (50%), Gaps = 23/195 (11%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSL--------------------P 42
V++A+ +P FA LP DQVILL+ +W+EL + N S+ P
Sbjct: 243 VEYARLMPHFAQLPLDDQVILLKAAWNELLIANVAWCSIESLDEAIAGVGHDSGFERRSP 302
Query: 43 LLESSPLFNASEHVAAVPNG--KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLF 100
+++ LF S+ + N KA A R+L+ + + + + +D E +CLKA++L+
Sbjct: 303 VMQPQQLF-LSQSFSYHRNSAIKAGVHAIFDRILSELSVKMKRLNLDRRELSCLKAIILY 361
Query: 101 KSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHI 160
S+ RG+K+ +E +++ L +H R HP RF +LLL R+I + H
Sbjct: 362 NSDIRGIKNREDIELCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSISLKCLDHP 421
Query: 161 FFAKTVANTSMEKLL 175
FF + +++ +++L
Sbjct: 422 FFFRIISDRPLDELF 436
>gi|380012603|ref|XP_003690369.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like [Apis florea]
Length = 440
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 89/179 (49%), Gaps = 7/179 (3%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V WAK++P F +LP DQV+LL W+EL + + S+ + + L V
Sbjct: 259 VAWAKHIPHFTSLPLEDQVLLLRAGWNELLIASFSHRSIDVKDGIVLATG----ITVHRN 314
Query: 63 KASQTAADV---RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
A Q RVL+ ++ + R + +D E CL++++LF E RGLK +V L+++
Sbjct: 315 SAQQAGVGTIFDRVLSELVSKMREMKMDRTELGCLRSIILFNPEVRGLKSIQEVTLLREK 374
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + R P RF +LLL R+I ++++FF K + + ++ L +M
Sbjct: 375 IYGALEGYCRVAWPDDAGRFAKLLLRLPAIRSIGLKCLEYLFFFKMIGDVPIDDFLVEM 433
>gi|355845815|gb|AET06182.1| retinoid-X receptor [Callinectes sapidus]
Length = 399
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 97/182 (53%), Gaps = 13/182 (7%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLN------AIQWSLPLLESSPLFNASEHV 56
V+WAK++P F LP DQV+LL+ W+EL + + ++ + L + +S H
Sbjct: 211 VEWAKHIPHFTDLPIEDQVVLLKAGWNELLIASFSHRSIGVEDGIVLATGLVVHRSSAHQ 270
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V A RVL+ ++ + + + +D E CL+A+VLF + +G+ VE L
Sbjct: 271 AGV-------GAIFDRVLSELVSKMKEMKMDKTELGCLRAIVLFNPDAKGVNCCSDVEIL 323
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+++ L ++ RT +P +P RF +LLL R+I ++++FF K + +T ++ L
Sbjct: 324 REKVYAALEEYTRTTYPDEPGRFPKLLLRLPSLRSIGLKCLEYLFFFKLIGDTPLDSYLM 383
Query: 177 DM 178
M
Sbjct: 384 KM 385
>gi|195999182|ref|XP_002109459.1| hypothetical protein TRIADDRAFT_49897 [Trichoplax adhaerens]
gi|190587583|gb|EDV27625.1| hypothetical protein TRIADDRAFT_49897 [Trichoplax adhaerens]
Length = 327
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 88/176 (50%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F L DQVILL W+EL L+ A + +E L + ++
Sbjct: 147 VEWAKKIPHFCDLCVDDQVILLRSGWNEL-LIAAFSFRSIAVEDGLLLSTGHYIHRTSAH 205
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A R+L ++ + R + +D E CL+A++LF + RGL + +VE ++
Sbjct: 206 NAGIGAIFDRILTELVNQMRYLKMDKTELGCLRAIILFNPDVRGLTSADRVEKYRELVYG 265
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L +V+ P Q RF +LLL R I ++H+FF K + + ++ L +M
Sbjct: 266 ALEAYVKKRFPDQLCRFAKLLLRLPALRAISLKTLEHLFFYKLIGDPPIDTFLMEM 321
>gi|171362735|dbj|BAG14374.1| retinoid X receptor gamma homolog [Lepisosteus platyrhinchus]
Length = 285
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 79/150 (52%), Gaps = 1/150 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L HV
Sbjct: 137 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSVTV-KDGILLATGLHVHRSSAH 195
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D E CL+A+VLF + +GL + +VE L+++
Sbjct: 196 SAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAIVLFNPDAKGLSNPSEVEGLREKVYA 255
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNI 152
L + + +P QP RF +LLL R+I
Sbjct: 256 SLEAYTKQKYPEQPGRFAKLLLRLPALRSI 285
>gi|162416915|emb|CAJ53825.2| putative hepatocyte nuclear factor 4 [Mytilus galloprovincialis]
Length = 312
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 6/178 (3%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F LP DQV LL E +L + S+ + + L N +P
Sbjct: 139 VEWAKYIPCFCELPLDDQVALLRAHAGEHLVLGVARRSMAVKDVLLLGND----GIIPRN 194
Query: 63 KASQTAADV--RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+ RVL+ ++ FR + +D EFAC+KA+V F E +GL D ++++ + Q
Sbjct: 195 ATDMEMGTIAARVLDELVAAFRDIQIDDTEFACIKAIVFFDPEAKGLTDPQKIKSFRYQV 254
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
QV L ++ RFG +LL+ ++I ++ I FAK ++ LL +M
Sbjct: 255 QVNLEDYINDRQYDSRGRFGEILLLLPALQSITWQMIEQIQFAKLFGMAKIDNLLQEM 312
>gi|307189123|gb|EFN73579.1| Photoreceptor-specific nuclear receptor [Camponotus floridanus]
Length = 380
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 94/176 (53%), Gaps = 17/176 (9%)
Query: 7 KNLPSFAA----LPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
+N+ FAA RDQ ILLEESWSELF+L A QWS P+ ES+ + VP
Sbjct: 211 ENIYEFAAKLLFFAVRDQTILLEESWSELFVLTAAQWSFPVDESTLV------PTDVPIE 264
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ R L +L + + VD +E+ACLKA+VLFK+E+R L + +V LQ+Q
Sbjct: 265 RREVLLDKARRLRELLAKCVALRVDHSEYACLKAIVLFKAESRNLCEPGRVSALQEQTVA 324
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
+ + R GRLLL+ R + A + + F TV + S+E+LL DM
Sbjct: 325 VFCER-------DARRVGRLLLLLPPARALCRATLHELLFKPTVGDVSVERLLGDM 373
>gi|380021453|ref|XP_003694579.1| PREDICTED: protein tailless-like [Apis florea]
Length = 400
Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 97/198 (48%), Gaps = 30/198 (15%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V WA++L L DQ+ LLE SW ELFLL A Q LP L+ +PL P
Sbjct: 211 VHWARDLAIGTNLVIEDQLTLLESSWRELFLLAAAQI-LPSLDPTPLLP--------PGP 261
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRG---------------- 106
+ A +V L F + +D E+AC++A+VLFK+
Sbjct: 262 QGLGLAVEVTRFRETLAGFHAMSLDQHEYACIRAIVLFKAGLDSEPLPSSRSSNGSTSPN 321
Query: 107 ----LKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFF 162
L+D+ V L+D AQ+ L Q + + RFG+LLL+ R++ + ++ +FF
Sbjct: 322 TGSRLRDAAAVARLRDGAQLALGQRL-SGASFGALRFGKLLLLLPSLRSVSAHAIEELFF 380
Query: 163 AKTVANTSMEKLLCDMYK 180
+T+ +E+++CDMYK
Sbjct: 381 RRTIGVIPIERIICDMYK 398
>gi|371875292|ref|NP_001243120.1| nuclear receptor subfamily 0 group B member 2 [Danio rerio]
Length = 248
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 89/186 (47%), Gaps = 12/186 (6%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQ---------WSLPLLESSPLFNA 52
V + KNLP+F LP +DQ+ LL+ W+ LF+L Q + P + L +
Sbjct: 62 TVYFMKNLPAFQQLPPKDQLKLLQNCWTPLFILGLAQDRVHFQVDESAAPSMLKRILLSG 121
Query: 53 SEHVAAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQ 112
E A T A V+ L + +F + + P E+A LK V+F + LK SL
Sbjct: 122 QESAGA---DSEQPTLAGVQTLKSCINKFWSLDLSPKEYAYLKGTVIFNPDVPDLKASLF 178
Query: 113 VENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSME 172
VE LQ +AQ L + + +P RF R+LL S ++I + + +FF + + +
Sbjct: 179 VEGLQYEAQQALKEVLVPLYPQDGGRFARILLTASTLKSITPSLITELFFRPVIGDAQIL 238
Query: 173 KLLCDM 178
LL DM
Sbjct: 239 DLLADM 244
>gi|390357871|ref|XP_003729121.1| PREDICTED: hepatocyte nuclear factor 4-beta-like isoform 1
[Strongylocentrotus purpuratus]
Length = 493
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 91/184 (49%), Gaps = 17/184 (9%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLP---LLESSPLFNASEHVAAV 59
V+WAK +PSF LP DQV LL E +L A + SLP +L P H
Sbjct: 195 VEWAKYIPSFCDLPLDDQVALLRAHAGEHLVLGAARRSLPYKDILVLGPDVILPRH---- 250
Query: 60 PNGKASQTAADV-----RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVE 114
SQ D+ RVL+ ++ R V +D EFACLKA+V F + +GL + +++
Sbjct: 251 -----SQDQMDIHRVASRVLDELIAPMRDVSLDDHEFACLKAIVFFDPDAKGLSEPNRIK 305
Query: 115 NLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKL 174
L+ Q Q+ L ++ RFG +LLM ++I ++ I FA+ + ++ L
Sbjct: 306 MLRYQVQIHLEDYINDRQYDSRGRFGEILLMLPPLQSITWQMIEQIQFARLMGVAKVDNL 365
Query: 175 LCDM 178
L +M
Sbjct: 366 LQEM 369
>gi|395521855|ref|XP_003765030.1| PREDICTED: nuclear receptor subfamily 0 group B member 2
[Sarcophilus harrisii]
Length = 253
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 92/181 (50%), Gaps = 5/181 (2%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLL----NAIQWSLPLLESSPLFNASEHVAA 58
V + + LPSFA LP DQ +LL SW+ LFLL +A+ + + + +
Sbjct: 69 VAFLQYLPSFALLPPGDQRLLLVNSWAPLFLLGLAQDAVTIEVTEMPAPSMLKKILLEER 128
Query: 59 VPNGKASQ-TAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQ 117
P + Q T A V L L F + + P E+A LK +LF +T GL+ + VE+L
Sbjct: 129 SPEPQTPQATLAGVYRLQCCLHTFWSLDLSPKEYAYLKGAILFNPDTPGLQSASHVESLH 188
Query: 118 DQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCD 177
+A+ +L + + HHP FGR+LL+ S ++I A + +FF + + +L+ D
Sbjct: 189 REAEQVLQEALALHHPVDHGCFGRILLVASTLKSISPALLSSLFFHPMFGDADITRLILD 248
Query: 178 M 178
M
Sbjct: 249 M 249
>gi|34785966|gb|AAH58069.1| Nr0b2a protein [Danio rerio]
Length = 265
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 89/186 (47%), Gaps = 12/186 (6%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQ---------WSLPLLESSPLFNA 52
V + KNLP+F LP +DQ+ LL+ W+ LF+L Q + P + L +
Sbjct: 79 TVYFMKNLPAFQQLPPKDQLKLLQNCWTPLFILGLAQDRVHFQVDESAAPSMLKRILLSG 138
Query: 53 SEHVAAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQ 112
E A T A V+ L + +F + + P E+A LK V+F + LK SL
Sbjct: 139 QESAGA---DSEQPTLAGVQTLKSCINKFWSLDLSPKEYAYLKGTVIFNPDVPDLKASLF 195
Query: 113 VENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSME 172
VE LQ +AQ L + + +P RF R+LL S ++I + + +FF + + +
Sbjct: 196 VEGLQYEAQQALKEVLVPLYPQDGGRFARILLTASTLKSITPSLITELFFRPVIGDAQIL 255
Query: 173 KLLCDM 178
LL DM
Sbjct: 256 DLLADM 261
>gi|112820307|gb|ABI24015.1| Rxr2 [Oikopleura dioica]
Length = 300
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 90/168 (53%), Gaps = 7/168 (4%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
++W K +P F L D+V L++ +W+E+ + + S+ E L +E + G
Sbjct: 137 IEWTKMIPQFETLKTDDRVYLVQSAWNEITIADIAHRSMEF-EDKLLIGKNE---ILTRG 192
Query: 63 KASQTAADV---RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
+A+ T D+ RV+ ++ + + + +D E CLKA++L+ + + L+D + VE+L+++
Sbjct: 193 QATSTNVDIIFGRVITELVYKMKEMKLDRTELGCLKAIILYNPDVKQLQDPILVEDLREK 252
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVA 167
L + + +P QP RF +LLL R+I ++ +F KTV
Sbjct: 253 VYASLEAYSKQKYPEQPGRFAKLLLRLPALRSIGLKCLESMFLFKTVG 300
>gi|197941310|gb|ACH78359.1| retinoid X receptor beta, partial [Sebastiscus marmoratus]
Length = 450
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 91/181 (50%), Gaps = 11/181 (6%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WAK +P F+ L DQVILL W+EL + + S+ + + L S H
Sbjct: 269 VEWAKRIPHFSELALDDQVILLRAGWNELLIASFSHRSISVKDGILLATGLHVHRNSAHS 328
Query: 57 AAVPNGKASQTAADV-----RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSL 111
A V A+V RVL ++ + R + +D E CL A++LF + +GL +
Sbjct: 329 AGVGAIFDRAHNAEVGAIFDRVLTELVSKMRDMQMDKTELGCLPAIILFNPDAKGLSNPS 388
Query: 112 QVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSM 171
+VE L+++ L + + +P Q RF +LLL R+I ++H+FF K + +T +
Sbjct: 389 EVELLRERVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 448
Query: 172 E 172
+
Sbjct: 449 D 449
>gi|14624971|gb|AAG01569.1| ultraspiracle protein [Lucilia cuprina]
Length = 467
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 94/196 (47%), Gaps = 23/196 (11%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN- 61
V++A+ P F L DQ++LL+ W+EL + N S+ L++ + H +
Sbjct: 263 VEYARRTPHFTHLQREDQILLLKAGWNELLIANVAWCSIESLDAEYASPGTVHDGSFGRR 322
Query: 62 -----------------GKASQTAADV-----RVLNGVLQRFRLVGVDPAEFACLKAVVL 99
+ S A+V R+L+ + + + + +D +E +CLKA++L
Sbjct: 323 SPVRQPQQLFLNQNFSYHRNSAIKANVVSIFDRILSELSIKMKRLNIDRSELSCLKAIIL 382
Query: 100 FKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQH 159
F + RGLK VE +++ L +H RT HP RF +LLL R+I + H
Sbjct: 383 FNPDIRGLKCRADVEVCREKIYACLDEHCRTEHPGDDGRFAQLLLRLPALRSISLKCLDH 442
Query: 160 IFFAKTVANTSMEKLL 175
+FF + + ++E+L+
Sbjct: 443 LFFFRLIGERALEELI 458
>gi|251823758|ref|NP_001156564.1| estrogen-related receptor gamma type 2 [Oryzias latipes]
gi|146395244|gb|ABQ24189.1| estrogen-related receptor gamma type 2 [Oryzias latipes]
Length = 439
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 92/179 (51%), Gaps = 8/179 (4%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
+ WAK++P FA+L DQ+ LL+ W E+ +L + SL L A +++ +
Sbjct: 261 IGWAKHIPGFASLSLADQMSLLQSGWMEILILRVVFRSLAF--EDKLVYADDYIM---DE 315
Query: 63 KASQTAADVRVLNGVLQ---RFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
+ S+ A + + N +LQ +++ +G++ EF LKA+ L S++ ++D+ V+ LQD+
Sbjct: 316 EQSKLAGLLDLNNAILQLVKKYKSIGLEKEEFVVLKAIALANSDSMQIEDTEAVQRLQDE 375
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + THHP P R G++++ R + VQH K M KL ++
Sbjct: 376 LHGALQDYEFTHHPEDPRRTGKVIMTLPLLRQTAARAVQHFCSIKQDGRVPMHKLFLEL 434
>gi|432907930|ref|XP_004077711.1| PREDICTED: nuclear receptor subfamily 0 group B member 2-like
[Oryzias latipes]
Length = 280
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 87/187 (46%), Gaps = 14/187 (7%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPL-LESSP--------LFNA 52
V + K+LP+F LP DQ LL W+ LF+L Q + + +P L N
Sbjct: 94 TVHFIKSLPAFNQLPLSDQFALLRSCWAPLFILGLAQEHVDFEVTDAPADSMLKKILLNR 153
Query: 53 SEHVAAVPNGKASQ-TAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSL 111
E P K Q T A V L L++F + + P E+A LK +F + LK L
Sbjct: 154 QES----PEAKREQPTMAGVSKLKSCLKKFWSLDLSPKEYAYLKGTTIFNPDVPELKAGL 209
Query: 112 QVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSM 171
VE LQ +AQ L + V+ HP + RF R+LL S + I V +FF + +
Sbjct: 210 FVEGLQQEAQHALREVVQLLHPGREERFARILLTASMLQGITPTLVTELFFRPVIGQADL 269
Query: 172 EKLLCDM 178
+LL DM
Sbjct: 270 LELLVDM 276
>gi|390357873|ref|XP_780389.2| PREDICTED: hepatocyte nuclear factor 4-beta-like isoform 2
[Strongylocentrotus purpuratus]
Length = 468
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 91/184 (49%), Gaps = 17/184 (9%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLP---LLESSPLFNASEHVAAV 59
V+WAK +PSF LP DQV LL E +L A + SLP +L P H
Sbjct: 170 VEWAKYIPSFCDLPLDDQVALLRAHAGEHLVLGAARRSLPYKDILVLGPDVILPRH---- 225
Query: 60 PNGKASQTAADV-----RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVE 114
SQ D+ RVL+ ++ R V +D EFACLKA+V F + +GL + +++
Sbjct: 226 -----SQDQMDIHRVASRVLDELIAPMRDVSLDDHEFACLKAIVFFDPDAKGLSEPNRIK 280
Query: 115 NLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKL 174
L+ Q Q+ L ++ RFG +LLM ++I ++ I FA+ + ++ L
Sbjct: 281 MLRYQVQIHLEDYINDRQYDSRGRFGEILLMLPPLQSITWQMIEQIQFARLMGVAKVDNL 340
Query: 175 LCDM 178
L +M
Sbjct: 341 LQEM 344
>gi|378925274|dbj|BAL63405.1| retinoic X receptor gamma, partial [Solea senegalensis]
Length = 217
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 76/142 (53%), Gaps = 1/142 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 75 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSV-TVKDGILLATGLHVHRSSAH 133
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D E CL+A+VLF + +GL + +VE L+++
Sbjct: 134 SAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAIVLFNPDAKGLSNPPEVEGLREKVYA 193
Query: 123 MLAQHVRTHHPAQPARFGRLLL 144
L + + +P QP RF +LLL
Sbjct: 194 SLESYTKQKYPDQPGRFAKLLL 215
>gi|357435371|gb|AET79962.1| SHP, partial [Gadus morhua]
Length = 186
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 84/177 (47%), Gaps = 12/177 (6%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPL-LESSP--------LFNAS 53
V + KNLP+F LP DQ LL++ W+ LF+L Q + + +P L N
Sbjct: 1 VHFMKNLPAFNQLPLSDQFSLLQKCWAPLFILGLAQEGVRFEVTDTPADSMLKKILMNRQ 60
Query: 54 EHVAAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQV 113
E V A + T A V L L+RF + + P E+A LK ++F + L +L +
Sbjct: 61 ESVDAE---REQPTVAGVGKLKSCLKRFGGLDLSPKEYAYLKGTLIFNPDIPELNAALFI 117
Query: 114 ENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTS 170
E LQ +AQ L + + HP P RF R+LL S + IP + +FF +
Sbjct: 118 EGLQQEAQKALEEVGQPLHPDDPGRFARILLSASMLQTIPPTLLTELFFRPLIGQAD 174
>gi|156399521|ref|XP_001638550.1| predicted protein [Nematostella vectensis]
gi|156225671|gb|EDO46487.1| predicted protein [Nematostella vectensis]
Length = 323
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 87/176 (49%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK+LP F LP DQV LL SE +L + SL L L ++ V G
Sbjct: 141 VEWAKHLPCFCELPLDDQVALLRAHASEHLVLGVSRRSLNL--KDILLLGNDLVIPRQAG 198
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
R+L+ ++ R + +D E++CLKA+V F + +GL DS +++ L+ + Q
Sbjct: 199 DTEVRKIATRILDEIVLPMRQLNIDDVEYSCLKAIVFFNPDAKGLGDSQKIKALRFEIQT 258
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ H +FG +LL+ + I V+ I FA+ ++ LL +M
Sbjct: 259 TLEDYISDHQYECRGKFGEILLLLPTLQAIALQMVEQIQFARLFGVAKVDSLLQEM 314
>gi|443685320|gb|ELT88964.1| hypothetical protein CAPTEDRAFT_172322 [Capitella teleta]
Length = 374
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 88/179 (49%), Gaps = 7/179 (3%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +PSF LP DQV LL E LL + SLP + L N +P G
Sbjct: 190 VEWAKYIPSFCELPLDDQVALLRAHAGEHLLLGLARRSLPFKDLMLLGND----YVLPRG 245
Query: 63 KASQ---TAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
+ RVL+ +++ R V +D +EFAC+KA+V F RG+ D +++ ++ Q
Sbjct: 246 HNHDPDISRITNRVLDELVRPLREVQIDDSEFACIKAIVFFDPHARGVSDPEKIKAMRYQ 305
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
Q+ L ++ RFG +LL+ ++I ++ I AK ++ LL +M
Sbjct: 306 VQINLEDYINDRQYDSRGRFGEILLILPNLQSITWQMIEQIQVAKLFGMAKIDNLLQEM 364
>gi|296207167|ref|XP_002750522.1| PREDICTED: nuclear receptor subfamily 0 group B member 2
[Callithrix jacchus]
Length = 257
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 94/191 (49%), Gaps = 19/191 (9%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLP---------------LLESS 47
V + +NLPSF LP +D+ LL+ W LFLL Q ++ LLE
Sbjct: 67 VAFLRNLPSFCQLPPQDKRQLLQGGWGPLFLLGLAQDAVTFEVAEAPVPSILKKILLEDP 126
Query: 48 PLFNASEHVAAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGL 107
++S +P+ + + A V+ L L+ F + + P E+ACLK +LF + GL
Sbjct: 127 ---SSSGGSGQLPD-RPQPSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDLPGL 182
Query: 108 KDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVA 167
S +E+LQ +A L + PA R R+LLM S ++IP++ ++ +FF +
Sbjct: 183 HASSHIEHLQQEAHWALYDVLEPWCPAAQGRLARVLLMASTLKSIPTSLLEDLFFRPIIG 242
Query: 168 NTSMEKLLCDM 178
+ + LL DM
Sbjct: 243 DVDIAGLLGDM 253
>gi|301613114|ref|XP_002936047.1| PREDICTED: hepatocyte nuclear factor 4-beta-like [Xenopus
(Silurana) tropicalis]
Length = 458
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 89/176 (50%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL LL + SLP + L N P
Sbjct: 198 VEWAKYIPAFCELPLDDQVALLRAHAGAHLLLGVAKRSLPYKDFLLLGNDFIMPMHCPEL 257
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ ++ A R+L+ +++ R + +D E+ACLKA++ F + +GL D +V+N++ Q QV
Sbjct: 258 EVARVAC--RILDELVKPLREIQIDDNEYACLKAIIFFDPDCKGLSDQTKVKNMRFQVQV 315
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RF +LL+ ++I ++ + FAK ++ LL +M
Sbjct: 316 NLEDYINDRQYDSRGRFSDILLLLPPLQSITWQMIEQVQFAKLFGVARIDSLLQEM 371
>gi|226442011|gb|ACO57595.1| retinoid X receptor alpha, partial [Gillichthys mirabilis]
Length = 221
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 76/142 (53%), Gaps = 1/142 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 79 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSV-TVKDGILLATGLHVHRSSAH 137
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D E CL+A+VLF + +GL + +VE L+++
Sbjct: 138 SAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAIVLFNPDAKGLSNPSEVEALREKVYA 197
Query: 123 MLAQHVRTHHPAQPARFGRLLL 144
L + + +P QP RF +LLL
Sbjct: 198 SLESYTKQKYPDQPGRFAKLLL 219
>gi|226442013|gb|ACO57596.1| retinoid X receptor alpha, partial [Gillichthys seta]
Length = 221
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 76/142 (53%), Gaps = 1/142 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 79 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSV-TVKDGILLATGLHVHRSSAH 137
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D E CL+A+VLF + +GL + +VE L+++
Sbjct: 138 SAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAIVLFNPDAKGLSNPSEVEALREKVYA 197
Query: 123 MLAQHVRTHHPAQPARFGRLLL 144
L + + +P QP RF +LLL
Sbjct: 198 SLESYTKQKYPDQPGRFAKLLL 219
>gi|307196327|gb|EFN77940.1| Transcription factor HNF-4-like protein [Harpegnathos saltator]
Length = 468
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 90/181 (49%), Gaps = 3/181 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
+ V WAK++P+F L DQV LL E LL + S+ L ++ L N P
Sbjct: 199 LMVSWAKSIPAFGELMLDDQVALLRAHAGEHLLLGVARRSMRLKDTLLLANNCVITRTCP 258
Query: 61 NGKASQ---TAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQ 117
G+ + RV++ +++ V +D EFACLKA+V F S +GL ++ +V++++
Sbjct: 259 EGRTQDVDISRVGARVMDELVKPMNDVQIDDTEFACLKAIVFFDSHAQGLSEAGKVKHMR 318
Query: 118 DQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCD 177
Q Q+ L ++ RFG +LLM ++I ++ + F K ++ LL +
Sbjct: 319 TQIQMNLEDYISDRQYHSRGRFGEILLMLPALQSITWQMIEQVHFVKLFGVVHVDTLLQE 378
Query: 178 M 178
M
Sbjct: 379 M 379
>gi|227150229|gb|ACP19739.1| putative retinoid X receptor [Calanus finmarchicus]
Length = 405
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 85/169 (50%), Gaps = 3/169 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F +L DQV LL W+EL + S+ + L AS V N
Sbjct: 223 VEWAKQIPHFTSLCLDDQVALLRGGWNELMIAGFSHRSIGIQNGIQL--ASGVVVTRENA 280
Query: 63 KASQTAADV-RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
S A RVL ++ + + +D E L+A+VL+ + +GLKD +VE L+++
Sbjct: 281 HTSGVGAIFDRVLVELVSKMTEMCMDKTELGSLRAIVLYNPDVKGLKDIARVEQLRERVY 340
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTS 170
L ++ R+ H + RF +LLL R+I ++H+FF K + +
Sbjct: 341 ASLEEYTRSTHENETGRFAKLLLRLPALRSIGLKCMEHLFFFKIIGESG 389
>gi|281334019|gb|ADA61199.1| ultraspiracle protein [Plutella xylostella]
gi|347810676|gb|AEP25407.1| ultraspiracle protein [Plutella xylostella]
Length = 414
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 98/195 (50%), Gaps = 17/195 (8%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQW-SLPLLESSPLFNASEHVAAVPN 61
V WA+++P F+ L DQV+L++ W+EL L AI W S+ LE +A P
Sbjct: 210 VVWARDIPHFSQLELDDQVVLIKSCWNELLLF-AIAWRSMEYLEDERENADGSRSSAPPQ 268
Query: 62 ----------GKASQTAADV-----RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRG 106
+ S A V RVL+ + + R + +D AE+ LKA++L + +G
Sbjct: 269 LMCLMPGMTLHRNSALLAGVGQIFDRVLSELSMKMRALRMDQAEYVALKAIILLNPDVKG 328
Query: 107 LKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTV 166
LK+ L+VE L+++ L ++ R ++ RF LLL R+I +H+FF V
Sbjct: 329 LKNRLEVEALREKMYSCLDEYCRRSRSSEEGRFASLLLRLPALRSISLKSFEHLFFFHLV 388
Query: 167 ANTSMEKLLCDMYKN 181
A++S+ + D ++
Sbjct: 389 ADSSIASYIKDALRS 403
>gi|403257407|ref|XP_003921311.1| PREDICTED: nuclear receptor subfamily 0 group B member 2 [Saimiri
boliviensis boliviensis]
Length = 257
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 93/191 (48%), Gaps = 19/191 (9%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLP---------------LLESS 47
V + +NLPSF LP +D+ LL+ W LFLL Q ++ LLE
Sbjct: 67 VAFLRNLPSFCQLPPQDKRQLLQGGWGPLFLLGLAQDAVTFEVAEAPVPSILKKILLEEP 126
Query: 48 PLFNASEHVAAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGL 107
++S +P+ + + A V+ L L+ F + + P E+ACLK +LF + GL
Sbjct: 127 ---SSSGGSGPLPD-RPQPSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDLPGL 182
Query: 108 KDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVA 167
S +E+LQ +A L + PA R R+LLM S ++IP++ + +FF +
Sbjct: 183 HASSHIEHLQQEAHWALCDVLEPWCPAAQGRLARVLLMASTLKSIPTSLLGDLFFRPIIG 242
Query: 168 NTSMEKLLCDM 178
+ + LL DM
Sbjct: 243 DVDIAGLLGDM 253
>gi|390475727|ref|XP_002759056.2| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 1 [Callithrix
jacchus]
Length = 445
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 93/176 (52%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L + +V +
Sbjct: 188 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSM--MYKDILLLGNNYVIHRNSC 245
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + RVL+ +++ F+ + +D E+ACLKA+V F + +GL D ++++N++ Q Q+
Sbjct: 246 EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPIKIKNMRFQVQI 305
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I FAK ++ LL +M
Sbjct: 306 GLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFAKLFGMVKIDNLLQEM 361
>gi|392350113|ref|XP_003750575.1| PREDICTED: photoreceptor-specific nuclear receptor-like, partial
[Rattus norvegicus]
Length = 293
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 56/74 (75%), Gaps = 2/74 (2%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAVKWAKNLP F+ LPFRDQVILLEE+W+ELFLL AIQWSLP L+S PL A ++
Sbjct: 217 MAVKWAKNLPVFSNLPFRDQVILLEEAWNELFLLGAIQWSLP-LDSCPLL-APPEASSSS 274
Query: 61 NGKASQTAADVRVL 74
G+ + +A++R L
Sbjct: 275 QGRLALASAEMRFL 288
>gi|90076842|dbj|BAE88101.1| unnamed protein product [Macaca fascicularis]
Length = 277
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 76/142 (53%), Gaps = 1/142 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 131 VEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 189
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL + +VE L+++
Sbjct: 190 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYA 249
Query: 123 MLAQHVRTHHPAQPARFGRLLL 144
L + + +P QP RF +LLL
Sbjct: 250 TLEAYTKQKYPDQPGRFAKLLL 271
>gi|344238439|gb|EGV94542.1| Hepatocyte nuclear factor 4-gamma [Cricetulus griseus]
Length = 288
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L + +V +
Sbjct: 110 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSM--IYKDILLLGNNYVIHRNSC 167
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + RVL+ +++ F+ + +D E+ACLKA+V F + +GL D ++++N++ Q Q+
Sbjct: 168 EVEVSRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQI 227
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 228 SLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMVKIDNLLQEM 283
>gi|296226749|ref|XP_002759057.1| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 2 [Callithrix
jacchus]
Length = 408
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 93/176 (52%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L + +V +
Sbjct: 151 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSM--MYKDILLLGNNYVIHRNSC 208
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + RVL+ +++ F+ + +D E+ACLKA+V F + +GL D ++++N++ Q Q+
Sbjct: 209 EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPIKIKNMRFQVQI 268
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I FAK ++ LL +M
Sbjct: 269 GLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFAKLFGMVKIDNLLQEM 324
>gi|380799419|gb|AFE71585.1| nuclear receptor subfamily 2 group F member 6, partial [Macaca
mulatta]
Length = 144
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 72/127 (56%)
Query: 52 ASEHVAAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSL 111
A H A + +A VR + + + VD AE+ CLKA+ LF + GL D
Sbjct: 3 AGLHAAPMAAERAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLSDPA 62
Query: 112 QVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSM 171
VE+LQ++AQV L ++VR +P+QP RFGRLLL R +P++ + +FF + V T +
Sbjct: 63 HVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPI 122
Query: 172 EKLLCDM 178
E L+ DM
Sbjct: 123 ETLIRDM 129
>gi|195984197|gb|ACG63787.1| retinoid X receptor splice variant RXR-I [Carcinus maenas]
Length = 402
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 98/185 (52%), Gaps = 17/185 (9%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLN------AIQWSLPLLESSPLFNASEHV 56
V+WAK++P F LP DQV+LL+ W+EL + + ++ + L + +S H
Sbjct: 214 VEWAKHIPHFTDLPIEDQVVLLKAGWNELLIASFSHRSMGVEDGIVLATGLVVHRSSAHQ 273
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V A RVL+ ++ + + + +D E CL+A+VLF + +G+ VE L
Sbjct: 274 AGV-------GAIFDRVLSELVAKVKEMKMDKTELGCLRAIVLFNPDAKGVTCCSDVEIL 326
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSME---- 172
+++ L + RT +P +P RF +LLL R+I ++++FF K + +T ++
Sbjct: 327 REKVYAALEESTRTTYPGEPGRFPKLLLRLPSLRSIGLKCLEYLFFFKLIGDTPLDSYSM 386
Query: 173 KLLCD 177
K+L D
Sbjct: 387 KMLVD 391
>gi|319063119|ref|NP_001187505.1| hepatocyte nuclear factor 4-alpha [Ictalurus punctatus]
gi|308323187|gb|ADO28730.1| hepatocyte nuclear factor 4-alpha [Ictalurus punctatus]
Length = 454
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 94/178 (52%), Gaps = 6/178 (3%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAA--VP 60
V+WAK +P+F LP DQV LL E LL A + S+ L L ++H+ A P
Sbjct: 190 VEWAKYIPAFCDLPLDDQVALLRAHAGEHLLLGAAKRSM--LYKDLLLLGNDHIVARNCP 247
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+ S+ A VR+L+ ++ F+ + +D E+ACLKA+V F + +GL D +++ ++ Q
Sbjct: 248 ELEVSRVA--VRILDELVLPFQELQIDDNEYACLKAIVFFDPDAKGLSDPSKIKRIRYQV 305
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
QV L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 306 QVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMAKIDNLLQEM 363
>gi|124001371|emb|CAF21859.1| ultraspiracle protein homolog of mammalian RXR, partial
[Periplaneta japonica]
Length = 279
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 71/139 (51%), Gaps = 7/139 (5%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK++P F +LP DQV+LL W+EL + S+ + + L V
Sbjct: 145 VEWAKHIPHFTSLPLSDQVLLLRAGWNELLIAAFSHRSVEVKDGIVLATG----LTVHRN 200
Query: 63 KASQTAADV---RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
A Q RVL ++ + R + +D E CL++V+LF + RGLK VE L+++
Sbjct: 201 SAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRSVILFNPDVRGLKSGPDVETLREK 260
Query: 120 AQVMLAQHVRTHHPAQPAR 138
L ++ RT HP +P R
Sbjct: 261 VYAALEEYTRTTHPDEPGR 279
>gi|27573799|pdb|1LV2|A Chain A, Hepatocyte Nuclear Factor 4 Is A Transcription Factor That
Constitutively Binds Fatty Acids
Length = 229
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L + +V +
Sbjct: 52 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSM--MYKDILLLGNNYVIHRNSC 109
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + RVL+ +++ F+ + +D E+ACLKA+V F + +GL D ++++N++ Q Q+
Sbjct: 110 EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQI 169
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 170 GLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMVKIDNLLQEM 225
>gi|195984199|gb|ACG63788.1| retinoid X receptor splice variant RXR-II [Carcinus maenas]
Length = 441
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 98/185 (52%), Gaps = 17/185 (9%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLN------AIQWSLPLLESSPLFNASEHV 56
V+WAK++P F LP DQV+LL+ W+EL + + ++ + L + +S H
Sbjct: 253 VEWAKHIPHFTDLPIEDQVVLLKAGWNELLIASFSHRSMGVEDGIVLATGLVVHRSSAHQ 312
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V A RVL+ ++ + + + +D E CL+A+VLF + +G+ VE L
Sbjct: 313 AGV-------GAIFDRVLSELVAKVKEMKMDKTELGCLRAIVLFNPDAKGVTCCSDVEIL 365
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSME---- 172
+++ L + RT +P +P RF +LLL R+I ++++FF K + +T ++
Sbjct: 366 REKVYAALEESTRTTYPGEPGRFPKLLLRLPSLRSIGLKCLEYLFFFKLIGDTPLDSYSM 425
Query: 173 KLLCD 177
K+L D
Sbjct: 426 KMLVD 430
>gi|149036142|gb|EDL90808.1| nuclear receptor subfamily 2, group F, member 6, isoform CRA_b
[Rattus norvegicus]
Length = 134
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 66/108 (61%)
Query: 71 VRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRT 130
VR + + + VD AE+ CLKA+ LF + GL D VE+LQ++AQV L ++VR
Sbjct: 13 VRAFQEQVDKLGRLQVDAAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQVALTEYVRA 72
Query: 131 HHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
+P+QP RFGRLLL R +P++ + +FF + V T +E L+ DM
Sbjct: 73 QYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDM 120
>gi|351697967|gb|EHB00886.1| Hepatocyte nuclear factor 4-gamma [Heterocephalus glaber]
Length = 416
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L + +V +
Sbjct: 159 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSM--MYKDILLLGNNYVIHRNSC 216
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + RVL+ +++ F+ + +D E+ACLKA+V F + +GL D ++++N++ Q Q+
Sbjct: 217 EVEISRVANRVLDELIRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQI 276
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 277 SLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMVKIDNLLQEM 332
>gi|16930821|ref|NP_476474.1| nuclear receptor subfamily 0 group B member 2 [Rattus norvegicus]
gi|81882239|sp|P97947.1|NR0B2_RAT RecName: Full=Nuclear receptor subfamily 0 group B member 2;
AltName: Full=Orphan nuclear receptor SHP; AltName:
Full=Small heterodimer partner
gi|1871465|dbj|BAA13127.1| small heterodimer partner homolog [Rattus norvegicus]
gi|1871469|dbj|BAA13171.1| small heterodimer partner homologue [Rattus norvegicus]
gi|56972355|gb|AAH88117.1| Nuclear receptor subfamily 0, group B, member 2 [Rattus norvegicus]
gi|149024178|gb|EDL80675.1| nuclear receptor subfamily 0, group B, member 2 [Rattus norvegicus]
Length = 260
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 11/187 (5%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPL-LESSPLFNASEHV----- 56
V + +NLPSF LP DQ LLE W LFLL Q ++ + +P+ + + +
Sbjct: 70 VAFLRNLPSFCLLPHEDQRRLLEGCWGPLFLLGLAQDTVTFEVAEAPVPSILKKILLEEP 129
Query: 57 -----AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSL 111
A P + A V+ L L+ F + + P E+A LK +LF + GL S
Sbjct: 130 NSGAQGAQPPDPPQPSLAAVQWLQHCLESFWSLELGPKEYAYLKGTILFNPDVPGLHASC 189
Query: 112 QVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSM 171
+ +LQ +A L + + +PA R R+LLM S +NI + +FF + + +
Sbjct: 190 HIAHLQQEAHWALCEVLEPWYPASQGRLARILLMASTLKNISCTLLVDLFFRPVIGDVDI 249
Query: 172 EKLLCDM 178
+LL DM
Sbjct: 250 TELLEDM 256
>gi|432097008|gb|ELK27507.1| Hepatocyte nuclear factor 4-gamma [Myotis davidii]
Length = 366
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ L L + ++ +
Sbjct: 109 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSM--LYKDILLLGNNYIIQRNSC 166
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + RVL+ +++ F+ + +D E+ACLKA+V F + +GL D ++++N++ Q Q+
Sbjct: 167 EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPMKIKNMRFQVQL 226
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 227 SLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMVKIDNLLQEM 282
>gi|395855283|ref|XP_003800096.1| PREDICTED: hepatocyte nuclear factor 4-gamma [Otolemur garnettii]
Length = 446
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 93/176 (52%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L + +V +
Sbjct: 189 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSM--MYKDILLLGNNYVIHRNSC 246
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + RVL+ +++ F+ + +D E+ACLKA+V F + +GL D ++++N++ Q Q+
Sbjct: 247 EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQI 306
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K + ++ LL +M
Sbjct: 307 SLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLLGMVKIDNLLQEM 362
>gi|260836451|ref|XP_002613219.1| hypothetical protein BRAFLDRAFT_57999 [Branchiostoma floridae]
gi|229298604|gb|EEN69228.1| hypothetical protein BRAFLDRAFT_57999 [Branchiostoma floridae]
Length = 399
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 85/176 (48%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
+ WAK++P F+ L DQ+ LL+ W E+ +L SL S L A +++
Sbjct: 212 IGWAKHIPGFSNLSLSDQMSLLQSGWMEILILGLAFRSLHY--DSRLVFAEDYIIDEEQS 269
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A+ R + ++ R + +GV+ EF LKA+ L S++ ++D V+ LQD
Sbjct: 270 RAAGLEELSRHILRLVGRLKALGVEKEEFVVLKAMALLNSDSVYVEDHEAVQKLQDVLHD 329
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L H HP+ R G++L+M R + + VQH + K M KL +M
Sbjct: 330 ALQDHDLNAHPSDSRRIGKILMMLPLLREVATKAVQHFYTIKMEGQVPMHKLFLEM 385
>gi|327287252|ref|XP_003228343.1| PREDICTED: hepatocyte nuclear factor 4-beta-like [Anolis
carolinensis]
Length = 459
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 89/176 (50%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL + SLP + L N P
Sbjct: 198 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGVAKRSLPYTDFLLLGNDFIIPMQCPEL 257
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ ++ A R+L+ +++ R + +D E+ACLKA+V F + +GL + +V+N++ Q QV
Sbjct: 258 EIARVAT--RILDELVKPLREIQIDENEYACLKAIVFFDPDCKGLSEPSKVKNMRFQVQV 315
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RF +LL+ ++I ++ + F K ++ LL +M
Sbjct: 316 NLEDYINDRQYDSRGRFSDILLLLPPLQSITWQMIEQVQFVKLFGVARIDSLLQEM 371
>gi|124001363|emb|CAF21855.1| ultraspiracle protein homolog of mammalian RXR, partial
[Periplaneta americana]
gi|124001365|emb|CAF21856.1| ultraspiracle protein homolog of mammalian RXR, partial
[Periplaneta australasiae]
gi|124001367|emb|CAF21857.1| ultraspiracle protein homolog of mammalian RXR, partial
[Periplaneta brunnea]
gi|124001369|emb|CAF21858.1| ultraspiracle protein homolog of mammalian RXR, partial
[Periplaneta fuliginosa]
gi|124001373|emb|CAF21860.1| ultraspiracle protein homolog of mammalian RXR, partial [Blatta
orientalis]
Length = 279
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 72/139 (51%), Gaps = 7/139 (5%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK++P F +LP DQV+LL W+EL + S+ + + L V
Sbjct: 145 VEWAKHIPHFTSLPLSDQVLLLRAGWNELLIAAFSHRSVEVKDGIVLATG----LTVHRN 200
Query: 63 KASQTAADV---RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
A Q RVL ++ + R + +D E CL++V+LF + RGLK + VE L+++
Sbjct: 201 SAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRSVILFNPDVRGLKSAPDVEALREK 260
Query: 120 AQVMLAQHVRTHHPAQPAR 138
L ++ RT HP +P R
Sbjct: 261 VYAALEEYTRTTHPDEPGR 279
>gi|338728283|ref|XP_001490847.2| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 1 [Equus
caballus]
Length = 446
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 92/176 (52%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L + +V
Sbjct: 189 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSM--MYKDILLLGNNYVIHRNGC 246
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A + RVL+ +++ F+ + +D E+ACLKA+V F + +GL D ++++N++ Q Q+
Sbjct: 247 EAEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQL 306
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 307 SLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMVKIDNLLQEM 362
>gi|218156198|dbj|BAH03331.1| retinoid X receptor [Lethenteron camtschaticum]
Length = 306
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 1/150 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 153 VEWAKRVPHFSELSLDDQVILLRAGWNELLIASFSHRSISV-KDGILLATGLHVHRSSAH 211
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + R + +D E CL+A+VLF + +GL +VE L+++
Sbjct: 212 SAGVGSIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDAKGLSSPGEVEALREKVYA 271
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNI 152
L + + +P QP RF +LLL R+I
Sbjct: 272 SLEAYCKQKYPDQPGRFAKLLLRLPALRSI 301
>gi|52843268|gb|AAU88063.1| estrogen receptor-related receptor short isoform [Branchiostoma
floridae]
Length = 455
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 85/176 (48%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
+ WAK++P F+ L DQ+ LL+ W E+ +L SL S L A +++
Sbjct: 262 IGWAKHIPGFSNLSLSDQMSLLQSGWMEILILGLAFRSLHY--DSRLVFAEDYIIDEEQS 319
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A+ R + ++ R + +GV+ EF LKA+ L S++ ++D V+ LQD
Sbjct: 320 RAAGLEELSRHILRLVGRLKALGVEKEEFVVLKAMALLNSDSVYVEDHEAVQKLQDVLHD 379
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L H HP+ R G++L+M R + + VQH + K M KL +M
Sbjct: 380 ALQDHDLNAHPSDSRRIGKILMMLPLLREVATKAVQHFYTIKMEGQVPMHKLFLEM 435
>gi|157133704|ref|XP_001662973.1| tailless (tll) [Aedes aegypti]
gi|108881478|gb|EAT45703.1| AAEL003020-PA [Aedes aegypti]
Length = 397
Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 97/205 (47%), Gaps = 29/205 (14%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M V + KNL F LP DQ+IL EESW E F+L Q+ LP+ + L A E++
Sbjct: 195 MNVNFLKNLVPFTKLPLDDQLILFEESWREFFILAVAQYLLPI-NFNHLLVAYEYLN--- 250
Query: 61 NGKASQTAA----DVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSE------------- 103
N + +V + +L + + VD EF L+AVVL+K+E
Sbjct: 251 NNRGEPIPECIIREVDIFQEILTQIVALRVDTNEFVYLRAVVLYKTEFDPESSISSSSSD 310
Query: 104 --------TRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSA 155
++ +++ V L+D A+ LA +VRT P RF LL + RN+ +
Sbjct: 311 GSDIISSTSKSIQEISTVRALEDGAKEALAAYVRTCRPIPAERFRLLLQLLPVLRNVSTY 370
Query: 156 RVQHIFFAKTVANTSMEKLLCDMYK 180
++ +FF + + + KLL D Y+
Sbjct: 371 TIEELFFRRNIGPAPLLKLLLDFYR 395
>gi|444705874|gb|ELW47258.1| Hepatocyte nuclear factor 4-gamma [Tupaia chinensis]
Length = 497
Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L + +V +
Sbjct: 199 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSM--MYKDILLLGNNYVIHRNSC 256
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + RVL+ +++ F+ + +D E+ACLKA+V F + +GL D ++++N++ Q Q+
Sbjct: 257 EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPMKIKNMRFQVQI 316
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 317 SLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMVKIDNLLQEM 372
>gi|403299977|ref|XP_003940746.1| PREDICTED: hepatocyte nuclear factor 4-gamma [Saimiri boliviensis
boliviensis]
Length = 445
Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L + +V +
Sbjct: 188 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSM--MYKDILLLGNNYVIHRNSC 245
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + RVL+ +++ F+ + +D E+ACLKA+V F + +GL D ++++N++ Q Q+
Sbjct: 246 EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPIKIKNMRFQVQI 305
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 306 GLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMVKIDNLLQEM 361
>gi|354471113|ref|XP_003497788.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Cricetulus
griseus]
Length = 455
Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L + +V +
Sbjct: 198 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSM--IYKDILLLGNNYVIHRNSC 255
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + RVL+ +++ F+ + +D E+ACLKA+V F + +GL D ++++N++ Q Q+
Sbjct: 256 EVEVSRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQI 315
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 316 SLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMVKIDNLLQEM 371
>gi|118788495|ref|XP_316782.3| AGAP000819-PA [Anopheles gambiae str. PEST]
gi|116126135|gb|EAA12047.4| AGAP000819-PA [Anopheles gambiae str. PEST]
Length = 436
Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 96/210 (45%), Gaps = 33/210 (15%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M V + K+L F LP DQ++L EESW E F+L Q+ P + S L A E++
Sbjct: 228 MNVNFLKSLTPFTQLPMADQLVLFEESWREFFILAVAQYLAP-INFSQLLIAYEYLNN-- 284
Query: 61 NGKASQTAAD-----VRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSE------------ 103
N + T +D V + +L + + VDP E+ L+A+VL+KSE
Sbjct: 285 NRGETGTVSDFLVKEVEIFQEILAQLAALRVDPNEYVYLRAIVLYKSEFDAETSISSVSS 344
Query: 104 -------------TRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCR 150
+ + + V L++ A+ LA ++ T P R+ LL + R
Sbjct: 345 DGSDVTTASSAGSAKSIGEIATVRALEESAKEALASYISTCRPGPSNRYRTLLQLLPALR 404
Query: 151 NIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
N+ S ++ +FF + + + KLL D Y+
Sbjct: 405 NVSSYTIEELFFRRNIGPAPLLKLLLDFYR 434
>gi|405972081|gb|EKC36868.1| Hepatocyte nuclear factor 4-alpha [Crassostrea gigas]
Length = 506
Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 90/176 (51%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F L DQV LL E ++ + SL + + L N + P
Sbjct: 195 VEWAKYIPCFCELTIDDQVALLRAHAGEHLIMGVARRSLGVKDVLLLGNDAIIPRNTPEV 254
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + A+ R+L+ ++Q + V +D +EFACLKA+V F + +GL D ++++ + Q QV
Sbjct: 255 EIGRVAS--RILDELVQPMKDVQMDESEFACLKAIVFFDPDAKGLTDPQKIKSFRYQVQV 312
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG +LLM ++I ++ + FAK ++ LL +M
Sbjct: 313 NLEDYINDRQYDTRGRFGEILLMLPPLQSITWQMIEQVQFAKLFGMARIDNLLQEM 368
>gi|291388149|ref|XP_002710691.1| PREDICTED: hepatocyte nuclear factor 4, gamma [Oryctolagus
cuniculus]
Length = 455
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L + +V +
Sbjct: 198 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSM--MYKDILLLGNNYVIHRNSC 255
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + RVL+ +++ F+ + +D E+ACLKA+V F + +GL D ++++N++ Q Q+
Sbjct: 256 EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQI 315
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 316 SLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMVKIDNLLQEM 371
>gi|297299621|ref|XP_001087848.2| PREDICTED: hepatocyte nuclear factor 4-gamma-like isoform 2 [Macaca
mulatta]
Length = 455
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L + +V +
Sbjct: 198 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSM--MYKDILLLGNNYVIHRNSC 255
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + RVL+ +++ F+ + +D E+ACLKA+V F + +GL D ++++N++ Q Q+
Sbjct: 256 EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQI 315
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 316 GLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMVKIDNLLQEM 371
>gi|355698038|gb|EHH28586.1| Hepatocyte nuclear factor 4-gamma [Macaca mulatta]
gi|355779768|gb|EHH64244.1| Hepatocyte nuclear factor 4-gamma [Macaca fascicularis]
Length = 445
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L + +V +
Sbjct: 188 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSM--MYKDILLLGNNYVIHRNSC 245
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + RVL+ +++ F+ + +D E+ACLKA+V F + +GL D ++++N++ Q Q+
Sbjct: 246 EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQI 305
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 306 GLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMVKIDNLLQEM 361
>gi|10720045|sp|Q9WUU6.2|HNF4G_MOUSE RecName: Full=Hepatocyte nuclear factor 4-gamma; Short=HNF-4-gamma;
AltName: Full=Nuclear receptor subfamily 2 group A
member 2
Length = 408
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L + +V +
Sbjct: 151 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSM--MYKDILLLGNHYVIHRNSC 208
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + RVL+ +++ F+ + +D E+ACLKA+V F + +GL D ++++N++ Q Q+
Sbjct: 209 EVEVSRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQI 268
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 269 SLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMVKIDNLLQEM 324
>gi|194223734|ref|XP_001499769.2| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Equus caballus]
Length = 185
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 72/127 (56%)
Query: 52 ASEHVAAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSL 111
A H A + +A VR + + + VD AE+ CLKA+ LF + GL D
Sbjct: 44 AGLHAAPMAAERAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLSDPA 103
Query: 112 QVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSM 171
VE+LQ++AQV L ++VR +P+QP RFGRLLL R +P++ + +FF + V T +
Sbjct: 104 HVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPI 163
Query: 172 EKLLCDM 178
E L+ DM
Sbjct: 164 ETLIRDM 170
>gi|242046702|ref|XP_002399654.1| zinc finger, C4 type, putative [Ixodes scapularis]
gi|215501722|gb|EEC11216.1| zinc finger, C4 type, putative [Ixodes scapularis]
Length = 317
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 88/176 (50%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V WAK++PSF L DQV LL E LL + S+ + + L ++ + +
Sbjct: 38 VDWAKSVPSFTELSIEDQVALLRAHAGEHLLLGLARRSMHI--KNVLLLGNDFIIPRVSS 95
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + R+++ ++ R V +D EFACL+A+V F T+GL + +++ L+ Q Q
Sbjct: 96 EVEISRVGARIMDELVTTLREVHIDDTEFACLRAIVFFDPHTKGLSEPQKIKALRYQVQT 155
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG ++L+ ++I ++ I FAK T ++ LL +M
Sbjct: 156 NLEDYINDRQYDSRGRFGEIMLLLPTLQSITWQMIEQIQFAKLFGMTKVDNLLQEM 211
>gi|148228957|ref|NP_001081539.1| hepatocyte nuclear factor 4-beta [Xenopus laevis]
gi|125859019|gb|AAI29598.1| LOC397902 protein [Xenopus laevis]
Length = 455
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 88/176 (50%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL LL + SLP + L N P
Sbjct: 198 VEWAKYIPAFCELPLDDQVALLRAHAGAHLLLGVAKRSLPYKDFLLLGNDFIMPMHCPEL 257
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ ++ A R+L+ +++ R + +D E+ CLKA++ F + +GL D +V+N++ Q QV
Sbjct: 258 EIARVAC--RILDELVKPLREIQIDDNEYVCLKAIIFFDPDCKGLSDQTKVKNMRFQVQV 315
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RF +LL+ ++I ++ + FAK ++ LL +M
Sbjct: 316 NLEDYINDRQFDSRGRFSDILLLLPPLQSITWQMIEQVQFAKLFGVARIDSLLQEM 371
>gi|345328556|ref|XP_001510073.2| PREDICTED: hepatocyte nuclear factor 4-beta-like [Ornithorhynchus
anatinus]
Length = 462
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 88/176 (50%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F LP DQV LL E LL + S+P + L N P
Sbjct: 198 VEWAKYIPVFCELPLDDQVALLRAHAGEHLLLGVAKRSIPYTDFLLLGNDFIIPMHCPEL 257
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ ++ A R+L+ +++ R + +D E+ACLKA++ F + +GL D +V+N++ Q QV
Sbjct: 258 EIARVA--TRILDELVKPLREIQIDENEYACLKAIIFFDPDCKGLSDPGKVKNMRFQVQV 315
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RF +LL+ ++I ++ I F K ++ LL +M
Sbjct: 316 NLEDYINDRQYDCRGRFSDILLLLPPLQSITWQMIEQIQFVKLFGVARIDSLLQEM 371
>gi|52843266|gb|AAU88062.1| estrogen receptor-related receptor long isoform [Branchiostoma
floridae]
Length = 496
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 85/176 (48%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
+ WAK++P F+ L DQ+ LL+ W E+ +L SL S L A +++
Sbjct: 303 IGWAKHIPGFSNLSLSDQMSLLQSGWMEILILGLAFRSLHY--DSRLVFAEDYIIDEEQS 360
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A+ R + ++ R + +GV+ EF LKA+ L S++ ++D V+ LQD
Sbjct: 361 RAAGLEELSRHILRLVGRLKALGVEKEEFVVLKAMALLNSDSVYVEDHEAVQKLQDVLHD 420
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L H HP+ R G++L+M R + + VQH + K M KL +M
Sbjct: 421 ALQDHDLNAHPSDSRRIGKILMMLPLLREVATKAVQHFYTIKMEGQVPMHKLFLEM 476
>gi|332240662|ref|XP_003269505.1| PREDICTED: hepatocyte nuclear factor 4-gamma [Nomascus leucogenys]
Length = 445
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L + +V +
Sbjct: 188 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSM--MYKDILLLGNNYVIHRNSC 245
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + RVL+ +++ F+ + +D E+ACLKA+V F + +GL D ++++N++ Q Q+
Sbjct: 246 EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQI 305
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 306 GLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMVKIDNLLQEM 361
>gi|402878525|ref|XP_003902931.1| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 1 [Papio
anubis]
Length = 445
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L + +V +
Sbjct: 188 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSM--MYKDILLLGNNYVIHRNSC 245
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + RVL+ +++ F+ + +D E+ACLKA+V F + +GL D ++++N++ Q Q+
Sbjct: 246 EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQI 305
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 306 GLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMVKIDNLLQEM 361
>gi|347967175|ref|XP_003436028.1| AGAP002095-PC [Anopheles gambiae str. PEST]
gi|333469724|gb|EGK97384.1| AGAP002095-PC [Anopheles gambiae str. PEST]
Length = 484
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 98/194 (50%), Gaps = 18/194 (9%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESS-PLFNASEHVAAV-- 59
+++A+ LP+F+ LP DQV LL W+E+ + + S+ +E+ P ++ +
Sbjct: 286 IEFARRLPNFSNLPREDQVTLLRSGWNEMLIASVAWRSMEYIETERPPDGRNDGRVTIRQ 345
Query: 60 -------PN-----GKASQTAADV---RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSET 104
PN A Q D R+L + + + + V+ AE LKA++LF S+
Sbjct: 346 PQLMCLGPNFTLHRNSAQQAGVDSLFDRILCELAIKMKRLDVNRAELGILKAIILFNSDI 405
Query: 105 RGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAK 164
RGLK +++ ++++ L ++ +T HP++ RF +LLL R+I + H+ F +
Sbjct: 406 RGLKCRKEIDQMREKIYACLDEYCKTQHPSEDGRFAQLLLRLPALRSISLKCIDHLNFLR 465
Query: 165 TVANTSMEKLLCDM 178
+ + ++ + +M
Sbjct: 466 LLGDKQLDNFIIEM 479
>gi|332827154|ref|XP_528171.3| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 4 [Pan
troglodytes]
gi|397522594|ref|XP_003831346.1| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 1 [Pan
paniscus]
gi|426359948|ref|XP_004047216.1| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 1 [Gorilla
gorilla gorilla]
Length = 445
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L + +V +
Sbjct: 188 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSM--MYKDILLLGNNYVIHRNSC 245
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + RVL+ +++ F+ + +D E+ACLKA+V F + +GL D ++++N++ Q Q+
Sbjct: 246 EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQI 305
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 306 GLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMVKIDNLLQEM 361
>gi|307213614|gb|EFN89000.1| Nuclear receptor subfamily 2 group E member 1 [Harpegnathos
saltator]
Length = 415
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 95/202 (47%), Gaps = 33/202 (16%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V W ++L + A L DQ++LLE SW ELFLL Q +P L+ +PL P
Sbjct: 223 VHWTRDLVTGANLTLDDQLMLLEASWRELFLLATAQL-MPTLDPTPLIP--------PTS 273
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRG---------------- 106
+ + A +V L F + +D EF+ ++A+V FK+
Sbjct: 274 RGIELAIEVNRFRETLASFHGMNLDFQEFSYIRAIVHFKAGLECDSLSSSRNSSSSSSTS 333
Query: 107 -------LKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQH 159
L++ V L+D AQ+ L Q + + + RFG++LL+ R++ + +
Sbjct: 334 SSSTPNRLRNPTAVARLRDSAQLALGQRLSSANYGA-LRFGKMLLLLPSLRSVSANSIAE 392
Query: 160 IFFAKTVANTSMEKLLCDMYKN 181
+FF T+ +E+++CDMY+
Sbjct: 393 LFFKSTIGVIPIERIICDMYRG 414
>gi|395739787|ref|XP_002819236.2| PREDICTED: hepatocyte nuclear factor 4-gamma [Pongo abelii]
Length = 445
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L + +V +
Sbjct: 188 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSM--MYKDILLLGNNYVIHRNSC 245
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + RVL+ +++ F+ + +D E+ACLKA+V F + +GL D ++++N++ Q Q+
Sbjct: 246 EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQI 305
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 306 GLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMVKIDNLLQEM 361
>gi|347967177|ref|XP_320944.5| AGAP002095-PA [Anopheles gambiae str. PEST]
gi|347967179|ref|XP_003436029.1| AGAP002095-PB [Anopheles gambiae str. PEST]
gi|347967181|ref|XP_003436030.1| AGAP002095-PD [Anopheles gambiae str. PEST]
gi|333469722|gb|EAA01003.6| AGAP002095-PA [Anopheles gambiae str. PEST]
gi|333469723|gb|EGK97383.1| AGAP002095-PB [Anopheles gambiae str. PEST]
gi|333469725|gb|EGK97385.1| AGAP002095-PD [Anopheles gambiae str. PEST]
Length = 515
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 98/194 (50%), Gaps = 18/194 (9%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESS-PLFNASEHVAAV-- 59
+++A+ LP+F+ LP DQV LL W+E+ + + S+ +E+ P ++ +
Sbjct: 317 IEFARRLPNFSNLPREDQVTLLRSGWNEMLIASVAWRSMEYIETERPPDGRNDGRVTIRQ 376
Query: 60 -------PN-----GKASQTAADV---RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSET 104
PN A Q D R+L + + + + V+ AE LKA++LF S+
Sbjct: 377 PQLMCLGPNFTLHRNSAQQAGVDSLFDRILCELAIKMKRLDVNRAELGILKAIILFNSDI 436
Query: 105 RGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAK 164
RGLK +++ ++++ L ++ +T HP++ RF +LLL R+I + H+ F +
Sbjct: 437 RGLKCRKEIDQMREKIYACLDEYCKTQHPSEDGRFAQLLLRLPALRSISLKCIDHLNFLR 496
Query: 165 TVANTSMEKLLCDM 178
+ + ++ + +M
Sbjct: 497 LLGDKQLDNFIIEM 510
>gi|108999785|ref|XP_001110533.1| PREDICTED: nuclear receptor subfamily 0 group B member 2-like
[Macaca mulatta]
gi|402853541|ref|XP_003891451.1| PREDICTED: nuclear receptor subfamily 0 group B member 2 [Papio
anubis]
gi|355557715|gb|EHH14495.1| hypothetical protein EGK_00429 [Macaca mulatta]
gi|355758486|gb|EHH61480.1| hypothetical protein EGM_20825 [Macaca fascicularis]
Length = 257
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 93/187 (49%), Gaps = 11/187 (5%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPL-LESSPLFN---------- 51
V + +NLPSF LP +DQ LL+ W LFLL Q ++ + +P+ +
Sbjct: 67 VAFLRNLPSFWQLPPQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVPSILKKILLEEP 126
Query: 52 ASEHVAAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSL 111
+S + P + + A V+ L L+ F + + P E+ACLK +LF + GL+ +
Sbjct: 127 SSSGGSGQPPDRPQPSLAAVQWLQCCLESFWGLELSPKEYACLKGTILFNPDVPGLQAAS 186
Query: 112 QVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSM 171
+ +LQ +A L + + PA R R+LL S ++IP++ + +FF + + +
Sbjct: 187 HIGHLQQEAHWALCEVLEPWCPAAQGRLARVLLTASTLKSIPTSLLGDLFFRPIIGDVDI 246
Query: 172 EKLLCDM 178
LL DM
Sbjct: 247 AGLLGDM 253
>gi|49457135|emb|CAG46888.1| HNF4G [Homo sapiens]
Length = 408
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L + +V +
Sbjct: 151 VEWAKYIPAFCELPLDDQVALLRAHSGEHLLLGATKRSM--MYKDILLLGNNYVIHRNSC 208
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + RVL+ +++ F+ + +D E+ACLKA+V F + +GL D ++++N++ Q Q+
Sbjct: 209 EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQI 268
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 269 GLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMVKIDNLLQEM 324
>gi|115583654|ref|NP_004124.4| hepatocyte nuclear factor 4-gamma [Homo sapiens]
gi|190691697|gb|ACE87623.1| hepatocyte nuclear factor 4, gamma protein [synthetic construct]
gi|325495495|gb|ADZ17353.1| hepatocyte nuclear factor 4 gamma [Homo sapiens]
Length = 445
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L + +V +
Sbjct: 188 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSM--MYKDILLLGNNYVIHRNSC 245
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + RVL+ +++ F+ + +D E+ACLKA+V F + +GL D ++++N++ Q Q+
Sbjct: 246 EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQI 305
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 306 GLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMVKIDNLLQEM 361
>gi|6002728|gb|AAF00110.1| hepatocyte nuclear factor 4 gamma [Homo sapiens]
Length = 408
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L + +V +
Sbjct: 151 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSM--IYKDILLLGNNYVIHRNSC 208
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + RVL+ +++ F+ + +D E+ACLKA+V F + +GL D ++++N++ Q Q+
Sbjct: 209 EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQI 268
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 269 GLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMVKIDNLLQEM 324
>gi|332827156|ref|XP_003339197.1| PREDICTED: hepatocyte nuclear factor 4-gamma [Pan troglodytes]
gi|332827190|ref|XP_003339198.1| PREDICTED: hepatocyte nuclear factor 4-gamma [Pan troglodytes]
gi|332827194|ref|XP_003311815.1| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 1 [Pan
troglodytes]
gi|397522596|ref|XP_003831347.1| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 2 [Pan
paniscus]
gi|397522598|ref|XP_003831348.1| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 3 [Pan
paniscus]
gi|397522600|ref|XP_003831349.1| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 4 [Pan
paniscus]
gi|402878527|ref|XP_003902932.1| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 2 [Papio
anubis]
gi|426359950|ref|XP_004047217.1| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 2 [Gorilla
gorilla gorilla]
gi|160110004|sp|Q14541.3|HNF4G_HUMAN RecName: Full=Hepatocyte nuclear factor 4-gamma; Short=HNF-4-gamma;
AltName: Full=Nuclear receptor subfamily 2 group A
member 2
gi|33096752|emb|CAE11875.1| hypothetical protein [Homo sapiens]
gi|85397490|gb|AAI05012.1| HNF4G protein [Homo sapiens]
gi|85398004|gb|AAI05010.1| HNF4G protein [Homo sapiens]
Length = 408
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L + +V +
Sbjct: 151 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSM--MYKDILLLGNNYVIHRNSC 208
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + RVL+ +++ F+ + +D E+ACLKA+V F + +GL D ++++N++ Q Q+
Sbjct: 209 EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQI 268
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 269 GLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMVKIDNLLQEM 324
>gi|109086735|ref|XP_001087731.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like isoform 1 [Macaca
mulatta]
Length = 408
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L + +V +
Sbjct: 151 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSM--MYKDILLLGNNYVIHRNSC 208
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + RVL+ +++ F+ + +D E+ACLKA+V F + +GL D ++++N++ Q Q+
Sbjct: 209 EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQI 268
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 269 GLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMVKIDNLLQEM 324
>gi|5834598|emb|CAA89990.2| hepatocyte nuclear factor 4 gamma (HNF4gamma) [Homo sapiens]
Length = 408
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L + +V +
Sbjct: 151 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSM--MYKDILLLGNNYVIHRNSC 208
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + RVL+ +++ F+ + +D E+ACLKA+V F + +GL D ++++N++ Q Q+
Sbjct: 209 EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQI 268
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 269 GLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMVKIDNLLQEM 324
>gi|334328352|ref|XP_001370469.2| PREDICTED: nuclear receptor subfamily 0 group B member 2
[Monodelphis domestica]
Length = 253
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 5/180 (2%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLL----NAIQWSLPLLESSPLFNASEHVAA 58
V + +NLPSF LP DQ +LL W+ LFLL +A+ + + + + +
Sbjct: 69 VAFLRNLPSFGLLPPGDQRLLLANCWAPLFLLGLAQDAVTFEVTEMPAPSMLKKILLEER 128
Query: 59 VPNGKASQ-TAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQ 117
P + Q T A V L L F + + P E+A LK +LF +T GL+ ++ L
Sbjct: 129 SPEPQRPQPTLAGVHRLQCCLHTFWSMDLSPKEYAYLKGAILFNPDTPGLQTVSYIKGLH 188
Query: 118 DQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCD 177
+A+ L + + HHP F R+LL+TS ++IP A + +FF + + + D
Sbjct: 189 QEAEQALQEALALHHPVDRGCFARILLVTSTLKSIPPALLSSLFFHPMFGDADITSFIVD 248
>gi|119607446|gb|EAW87040.1| hepatocyte nuclear factor 4, gamma, isoform CRA_a [Homo sapiens]
Length = 445
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L + +V +
Sbjct: 188 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSM--IYKDILLLGNNYVIHRNSC 245
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + RVL+ +++ F+ + +D E+ACLKA+V F + +GL D ++++N++ Q Q+
Sbjct: 246 EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQI 305
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 306 GLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMVKIDNLLQEM 361
>gi|7305147|ref|NP_038948.1| hepatocyte nuclear factor 4-gamma [Mus musculus]
gi|4914655|emb|CAB43724.1| hepatocyte nuclear factor 4 gamma [Mus musculus]
gi|116138605|gb|AAI25520.1| Hepatocyte nuclear factor 4, gamma [Mus musculus]
gi|148673275|gb|EDL05222.1| hepatocyte nuclear factor 4, gamma [Mus musculus]
Length = 418
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L + +V +
Sbjct: 161 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSM--MYKDILLLGNHYVIHRNSC 218
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + RVL+ +++ F+ + +D E+ACLKA+V F + +GL D ++++N++ Q Q+
Sbjct: 219 EVEVSRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQI 278
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 279 SLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMVKIDNLLQEM 334
>gi|345793141|ref|XP_544134.2| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 2 [Canis lupus
familiaris]
Length = 446
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 93/176 (52%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F+ LP DQV LL E LL A + S+ + L + +V +
Sbjct: 189 VEWAKYIPAFSELPLDDQVALLRAHAGEHLLLGATKRSM--VYKDILLLGNNYVIHRNSS 246
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + RVL+ +++ F+ + +D E+ACLKA+V F + +GL D ++++N++ Q Q+
Sbjct: 247 EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQL 306
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 307 SLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMVKIDNLLQEM 362
>gi|74180629|dbj|BAE25549.1| unnamed protein product [Mus musculus]
Length = 418
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L + +V +
Sbjct: 161 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSM--MYKDILLLGNHYVIHRNSC 218
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + RVL+ +++ F+ + +D E+ACLKA+V F + +GL D ++++N++ Q Q+
Sbjct: 219 EVEVSRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQI 278
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 279 SLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMVKIDNLLQEM 334
>gi|449672836|ref|XP_002165675.2| PREDICTED: retinoic acid receptor RXR-like [Hydra magnipapillata]
Length = 502
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 97/185 (52%), Gaps = 16/185 (8%)
Query: 4 KWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQW----SLPLLESSPLFNASEHVAAV 59
+WA+ LP F L DQ+ +L+ +WSEL L+ A+ + S L+ + L+ V
Sbjct: 326 EWARRLPCFEDLNITDQIKVLQSNWSEL-LIGALCFRSLTSNGLMLETGLY--------V 376
Query: 60 PNGKASQTAADV---RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
P G + + R + VL R + + VD E+ CL+AV+LF +T L QVE +
Sbjct: 377 PRGSIQDNSIETTLTRTFDKVLDRMKDLQVDMTEWGCLRAVILFNPDTNSLGAVNQVEEI 436
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
+++ + L + + P + RF RLLL + +++ ++ + ++K + N+S++ +C
Sbjct: 437 RERYLLTLIDYCKLIFPNENNRFSRLLLCLPRIKSLAIEVLEILKYSKLIMNSSIDSFIC 496
Query: 177 DMYKN 181
D+ N
Sbjct: 497 DILAN 501
>gi|348506580|ref|XP_003440836.1| PREDICTED: estrogen-related receptor gamma-like [Oreochromis
niloticus]
Length = 440
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 91/179 (50%), Gaps = 8/179 (4%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
+ WAK++P F +L DQ+ LL+ W E+ +L + SL L + L A +++ +
Sbjct: 262 IGWAKHIPGFPSLSLADQMSLLQSGWMEILILRVVFRSLALEDK--LVYAEDYIM---DE 316
Query: 63 KASQTAADVRVLNGVLQ---RFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
+ S+ A + + N +LQ +++ +G++ EF LKA+ L S++ ++DS V+ LQD
Sbjct: 317 EQSKLAGLLDLNNAILQLVKKYKAMGLEKEEFVVLKAIALANSDSMHIEDSEAVQRLQDV 376
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + HHP P R G++++ R + +QH K M KL ++
Sbjct: 377 LHGALQDYETIHHPEDPRRAGKMIMTLPLLRQTAARAIQHFCSIKQDGRVPMHKLFLEL 435
>gi|119607447|gb|EAW87041.1| hepatocyte nuclear factor 4, gamma, isoform CRA_b [Homo sapiens]
Length = 408
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L + +V +
Sbjct: 151 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSM--IYKDILLLGNNYVIHRNSC 208
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + RVL+ +++ F+ + +D E+ACLKA+V F + +GL D ++++N++ Q Q+
Sbjct: 209 EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQI 268
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 269 GLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMVKIDNLLQEM 324
>gi|216409716|dbj|BAH02295.1| hepatocyte nuclear factor 4, gamma [Homo sapiens]
Length = 408
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L + +V +
Sbjct: 151 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSM--IYKDILLLGNNYVIHRNSC 208
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + RVL+ +++ F+ + +D E+ACLKA+V F + +GL D ++++N++ Q Q+
Sbjct: 209 EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQI 268
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 269 GLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMVKIDNLLQEM 324
>gi|348588691|ref|XP_003480098.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Cavia porcellus]
Length = 455
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L + +V +
Sbjct: 198 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSM--MYKDILLLGNNYVIHRNSC 255
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + RVL+ +++ F+ + +D E+ACLKA+V F + +GL D ++++N++ Q Q+
Sbjct: 256 EIEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQI 315
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 316 SLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMVKIDNLLQEM 371
>gi|57116108|gb|AAW33563.1| hepatic nuclear factor 4beta [Gallus gallus]
Length = 459
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 89/176 (50%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL + S+P + L N P
Sbjct: 200 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGVAKRSIPYTDFLLLGNDFIIPMHCPEL 259
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ ++ A R+L+ +++ R + +D E+ACLKA++ F + +GL + +V+N++ Q QV
Sbjct: 260 EIARVA--TRILDELVKPLRDIQIDDNEYACLKAIIFFDPDCKGLSEPGKVKNMRFQVQV 317
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RF +LL+ ++I ++ + F K ++ LL +M
Sbjct: 318 NLEDYINDRQIDSRGRFSDILLLLPPLQSITWQMIEQVQFVKLFGVARIDSLLQEM 373
>gi|347800621|ref|NP_001025747.2| hepatic nuclear factor 4beta [Gallus gallus]
Length = 468
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 89/176 (50%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL + S+P + L N P
Sbjct: 209 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGVAKRSIPYTDFLLLGNDFIIPMHCPEL 268
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ ++ A R+L+ +++ R + +D E+ACLKA++ F + +GL + +V+N++ Q QV
Sbjct: 269 EIARVA--TRILDELVKPLRDIQIDDNEYACLKAIIFFDPDCKGLSEPGKVKNMRFQVQV 326
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RF +LL+ ++I ++ + F K ++ LL +M
Sbjct: 327 NLEDYINDRQYDSRGRFSDILLLLPPLQSITWQMIEQVQFVKLFGVARIDSLLQEM 382
>gi|345793143|ref|XP_003433716.1| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 1 [Canis lupus
familiaris]
Length = 408
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 93/176 (52%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F+ LP DQV LL E LL A + S+ + L + +V +
Sbjct: 151 VEWAKYIPAFSELPLDDQVALLRAHAGEHLLLGATKRSM--VYKDILLLGNNYVIHRNSS 208
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + RVL+ +++ F+ + +D E+ACLKA+V F + +GL D ++++N++ Q Q+
Sbjct: 209 EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQL 268
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 269 SLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMVKIDNLLQEM 324
>gi|344273185|ref|XP_003408404.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Loxodonta
africana]
Length = 455
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 92/176 (52%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L + +V +
Sbjct: 198 VEWAKYIPAFCELPLDDQVALLRTHAGEHLLLGATKRSM--VYKDILLLGNNYVIHRNSC 255
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + R+L+ +++ F+ + +D E+ACLKA+V F + +GL D ++++N++ Q Q+
Sbjct: 256 EVEISRVANRILDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQI 315
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 316 SLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMVKIDNLLQEM 371
>gi|301788566|ref|XP_002929700.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Ailuropoda
melanoleuca]
Length = 455
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L + +V +
Sbjct: 198 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSM--VYKDILLLGNNYVIHRNSS 255
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + RVL+ +++ F+ + +D E+ACLKA+V F + +GL D ++++N++ Q Q+
Sbjct: 256 EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQL 315
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 316 SLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMVKIDNLLQEM 371
>gi|297665875|ref|XP_002811273.1| PREDICTED: nuclear receptor subfamily 0 group B member 2 [Pongo
abelii]
Length = 257
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 93/191 (48%), Gaps = 19/191 (9%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLP---------------LLESS 47
V + +NLPSF LP +DQ LL+ W LFLL Q ++ LLE
Sbjct: 67 VAFLRNLPSFWQLPPQDQRQLLQGCWGPLFLLGLAQDAVTFEVAEAPVPSILKKILLEEP 126
Query: 48 PLFNASEHVAAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGL 107
++S +PN + + A V+ L L+ F + + P E+ACLK +LF + GL
Sbjct: 127 ---SSSGGSGQLPN-RPQPSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVPGL 182
Query: 108 KDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVA 167
+ + + +LQ +A L + + PA R R+LL S ++IP++ + +FF +
Sbjct: 183 QAASHIGHLQQEAHWALCEVLEPWCPAAQGRLARVLLTASTLKSIPTSLLGDLFFRPIIG 242
Query: 168 NTSMEKLLCDM 178
+ + LL DM
Sbjct: 243 DVDIAGLLGDM 253
>gi|348529246|ref|XP_003452125.1| PREDICTED: nuclear receptor subfamily 0 group B member 2
[Oreochromis niloticus]
gi|24710927|gb|AAN17673.1| orphan nuclear receptor SHP [Oreochromis niloticus]
gi|24710934|gb|AAN17674.1| orphan nuclear receptor SHP [Oreochromis niloticus]
Length = 258
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 90/187 (48%), Gaps = 14/187 (7%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPL---------LESSPLFNA 52
+ + KNLP+F LP DQ LL+ W+ LF+L Q + + L N
Sbjct: 72 TLNFMKNLPAFNQLPPNDQFALLKSCWAPLFILGLAQERVDFEVTDIPTDSMLKKILLNR 131
Query: 53 SEHVAAVPNGKASQ-TAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSL 111
E P + Q T A V L L++F + + P E+A LK +F + LK +L
Sbjct: 132 PES----PEVEREQPTMAGVSKLVSCLKKFWSLDLSPKEYAYLKGTTIFNPDVPDLKAAL 187
Query: 112 QVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSM 171
VE LQ +AQ L++ V+ HP RF R+LL S ++I + + +FF + ++
Sbjct: 188 FVEGLQQEAQQALSKVVQLLHPGDGDRFARILLTASMLQSITPSLITELFFRPVIGQANL 247
Query: 172 EKLLCDM 178
+LL DM
Sbjct: 248 LELLVDM 254
>gi|440893234|gb|ELR46081.1| Nuclear receptor subfamily 2 group F member 6, partial [Bos
grunniens mutus]
Length = 441
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 66/108 (61%)
Query: 71 VRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRT 130
VR + + + VD AE+ CLKA+ LF + GL D VE+LQ++AQV L ++VR
Sbjct: 319 VRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQVALTEYVRA 378
Query: 131 HHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
+P+QP RFGRLLL R +P++ + +FF + V T +E L+ DM
Sbjct: 379 QYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDM 426
>gi|224081638|ref|XP_002191963.1| PREDICTED: nuclear receptor subfamily 0 group B member 2
[Taeniopygia guttata]
Length = 265
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 95/184 (51%), Gaps = 12/184 (6%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQ--WSLPLLES------SPLFNASE 54
+ + +N+ +F LP DQ++LL+ W LFLL +Q + ++E+ + + +
Sbjct: 69 INFVRNVAAFRLLPREDQLLLLDGCWVPLFLLGLVQEMVTFEVMEAPAPSMLKKILLSGQ 128
Query: 55 HVAAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVE 114
P G T A V+ L L F + + P+EF L+ VLF + GL+ +L +E
Sbjct: 129 SKGQEPEG-TQPTLAAVQRLQWCLSSFWRLDLSPSEFTYLRGAVLFNPDIPGLRAALYIE 187
Query: 115 NLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKL 174
+LQ +AQ L + + HP ARF +L +TS R IP+ V +FF + + +M +L
Sbjct: 188 SLQWEAQRALQELL---HPEDQARFSHILRVTSSLRAIPAGLVTALFFRPLIGDAAMGEL 244
Query: 175 LCDM 178
L +M
Sbjct: 245 LAEM 248
>gi|281348540|gb|EFB24124.1| hypothetical protein PANDA_019943 [Ailuropoda melanoleuca]
Length = 446
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L + +V +
Sbjct: 189 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSM--VYKDILLLGNNYVIHRNSS 246
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + RVL+ +++ F+ + +D E+ACLKA+V F + +GL D ++++N++ Q Q+
Sbjct: 247 EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQL 306
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 307 SLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMVKIDNLLQEM 362
>gi|126321023|ref|XP_001367478.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Monodelphis
domestica]
Length = 455
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 92/176 (52%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L + ++ +
Sbjct: 198 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSM--MYKDILLLGNNYIIHRNSC 255
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + R+L+ +++ F+ + +D E+ACLKA+V F + +GL D ++++N++ Q Q+
Sbjct: 256 EVEISRVANRILDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQI 315
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 316 SLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMVKIDNLLQEM 371
>gi|242019940|ref|XP_002430416.1| retinoid X receptor, putative [Pediculus humanus corporis]
gi|212515546|gb|EEB17678.1| retinoid X receptor, putative [Pediculus humanus corporis]
Length = 362
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 93/183 (50%), Gaps = 10/183 (5%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFN-------ASEH 55
V+WAK +P+F L DQV LL E LL + SL L + L N SE+
Sbjct: 174 VEWAKYIPAFTELHLDDQVALLRAHAGEHLLLGLARRSLHLKDILLLGNNCIITRYCSEN 233
Query: 56 VAAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVEN 115
A P+ S+ +RV++ +++ V +D EFACLKA+V F +GL D+ ++++
Sbjct: 234 -ARSPDVDISRVG--IRVMDELVKPLTEVQIDDTEFACLKAIVFFDPNAKGLSDTTRIKH 290
Query: 116 LQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLL 175
L+ Q Q+ L ++ RFG +LL+ ++I ++ I FAK ++ LL
Sbjct: 291 LRYQIQINLEDYISDRQYDTRGRFGEILLILPALQSITWQMIEQIQFAKLFGVARIDNLL 350
Query: 176 CDM 178
+M
Sbjct: 351 QEM 353
>gi|170053585|ref|XP_001862743.1| tailless [Culex quinquefasciatus]
gi|167874052|gb|EDS37435.1| tailless [Culex quinquefasciatus]
Length = 397
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 95/202 (47%), Gaps = 23/202 (11%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M V + KNL F LP DQ++L EESW E F+L Q+ P+ + L A E++
Sbjct: 195 MNVNFLKNLVPFTKLPLDDQLVLFEESWREFFILAVAQYLQPI-NFNHLLVAYEYLNTNR 253
Query: 61 NGKASQTAA-DVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSE---------------- 103
+ +V + +L + + VD EF L+AVVL+K+E
Sbjct: 254 GEPVPECIIREVEIFQEILAQIVALRVDINEFVYLRAVVLYKTEFDPESSISSSSSDGSD 313
Query: 104 -----TRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQ 158
++ +++ V L+D A+ LA ++RT P R+ LL + RN+ + ++
Sbjct: 314 IISSTSKSIQEVSTVRALEDGAKDALASYIRTCRPGPIDRYRALLQLLPALRNVSTYTIE 373
Query: 159 HIFFAKTVANTSMEKLLCDMYK 180
+FF + + + KLL D Y+
Sbjct: 374 ELFFRRNIGPAPLLKLLLDFYR 395
>gi|426235662|ref|XP_004011799.1| PREDICTED: hepatocyte nuclear factor 4-gamma [Ovis aries]
Length = 446
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L + +V +
Sbjct: 189 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSM--MYKDILLLGNNYVIHRNSC 246
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + RVL+ +++ F+ + +D E+ACLKA+V F + +GL D ++++N++ Q Q+
Sbjct: 247 EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQL 306
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 307 SLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMVKIDNLLQEM 362
>gi|1588511|prf||2208436B hepatocyte nuclear factor 4
Length = 774
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L + +V +
Sbjct: 517 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSM--MYKDILLLGNNYVIHRNSC 574
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + RVL+ +++ F+ + +D E+ACLKA+V F + +GL D ++++N++ Q Q+
Sbjct: 575 EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQI 634
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 635 GLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMVKIDNLLQEM 690
>gi|326927493|ref|XP_003209927.1| PREDICTED: hepatocyte nuclear factor 4-beta-like [Meleagris
gallopavo]
Length = 468
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 89/176 (50%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL + S+P + L N P
Sbjct: 209 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGVAKRSIPYTDFLLLGNDFIIPMHCPEL 268
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ ++ A R+L+ +++ R + +D E+ACLKA++ F + +GL + +V+N++ Q QV
Sbjct: 269 EIARVA--TRILDELVKPLRDIQIDDNEYACLKAIIFFDPDCKGLSEPGKVKNMRFQVQV 326
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RF +LL+ ++I ++ + F K ++ LL +M
Sbjct: 327 NLEDYINDRQYDSRGRFSDILLLLPPLQSITWQMIEQVQFIKLFGVARIDSLLQEM 382
>gi|126302917|ref|XP_001369818.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 2 [Monodelphis
domestica]
Length = 474
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 90/179 (50%), Gaps = 7/179 (3%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFN---ASEHVAAV 59
V+WAK +P+F LP DQV LL E LL A + S+ + L N H +
Sbjct: 199 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGNDYIVPRHCPEL 258
Query: 60 PNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
+ VR+L+ ++Q F+ + VD E+ACLKA++ F + +GL D +++ ++ Q
Sbjct: 259 ----VEMSRVAVRILDELVQPFQELQVDDNEYACLKAIIFFDPDAKGLSDPGKIKRMRSQ 314
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
QV L ++ RFG LLL+ ++I ++ I F K T ++ LL +M
Sbjct: 315 VQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFGVTKIDNLLQEM 373
>gi|410987323|ref|XP_003999954.1| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 1 [Felis
catus]
Length = 446
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L + +V +
Sbjct: 189 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSM--VYKDILLLGNNYVIHRNSS 246
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + RVL+ +++ F+ + +D E+ACLKA+V F + +GL D ++++N++ Q Q+
Sbjct: 247 EIEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQL 306
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 307 SLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMVKIDNLLQEM 362
>gi|126302915|ref|XP_001369784.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Monodelphis
domestica]
Length = 464
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 90/179 (50%), Gaps = 7/179 (3%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFN---ASEHVAAV 59
V+WAK +P+F LP DQV LL E LL A + S+ + L N H +
Sbjct: 199 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGNDYIVPRHCPEL 258
Query: 60 PNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
+ VR+L+ ++Q F+ + VD E+ACLKA++ F + +GL D +++ ++ Q
Sbjct: 259 ----VEMSRVAVRILDELVQPFQELQVDDNEYACLKAIIFFDPDAKGLSDPGKIKRMRSQ 314
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
QV L ++ RFG LLL+ ++I ++ I F K T ++ LL +M
Sbjct: 315 VQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFGVTKIDNLLQEM 373
>gi|45430043|ref|NP_991380.1| hepatocyte nuclear factor 4-gamma [Bos taurus]
gi|32454393|gb|AAP82998.1| hepatocyte nuclear factor 4gamma [Bos taurus]
Length = 425
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L + +V +
Sbjct: 168 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSM--MYKDILLLGNNYVIHRNSC 225
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + RVL+ +++ F+ + +D E+ACLKA+V F + +GL D ++++N++ Q Q+
Sbjct: 226 EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQL 285
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 286 SLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMVKIDNLLQEM 341
>gi|296480539|tpg|DAA22654.1| TPA: hepatocyte nuclear factor 4, gamma [Bos taurus]
Length = 425
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L + +V +
Sbjct: 168 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSM--MYKDILLLGNNYVIHRNSC 225
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + RVL+ +++ F+ + +D E+ACLKA+V F + +GL D ++++N++ Q Q+
Sbjct: 226 EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQL 285
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 286 SLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMVKIDNLLQEM 341
>gi|449282512|gb|EMC89345.1| Hepatocyte nuclear factor 4-beta [Columba livia]
Length = 459
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 89/176 (50%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL + S+P + L N P
Sbjct: 200 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGVAKRSIPYTDFLLLGNDFIIPMHCPEL 259
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ ++ A R+L+ +++ R + +D E+ACLKA++ F + +GL + +V+N++ Q QV
Sbjct: 260 EIARVA--TRILDELVKPLRDIQIDDNEYACLKAIIFFDPDCKGLSEPGKVKNMRFQVQV 317
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RF +LL+ ++I ++ + F K ++ LL +M
Sbjct: 318 NLEDYINDRQYDSRGRFSDILLLLPPLQSITWQMIEQVQFVKLFGVARIDSLLQEM 373
>gi|118343826|ref|NP_001071735.1| nuclear receptor [Ciona intestinalis]
gi|70569867|dbj|BAE06492.1| nuclear receptor [Ciona intestinalis]
Length = 512
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 89/176 (50%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F+ LP DQV LL E L+ A + SLP + L N P
Sbjct: 250 VEWAKYIPAFSELPLDDQVALLRAHAGENLLMGAAKRSLPYKDVLLLGNDFIIPRHCPEV 309
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ ++ A VRVL+ +++ + +D EFACLKA+V F + RGL + +++ ++ Q
Sbjct: 310 EITRVA--VRVLDELVRPLADLSLDANEFACLKAIVFFDPDARGLNNPTKIKQMRSQVMC 367
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG +LL+ ++I ++ I F + ++ LL +M
Sbjct: 368 NLEDYINDRQYDSRGRFGEILLLLPTLQSITWQMIEQIQFVRIFGVARVDNLLQEM 423
>gi|118344424|ref|NP_001072033.1| nuclear receptor [Ciona intestinalis]
gi|70569872|dbj|BAE06493.1| nuclear receptor [Ciona intestinalis]
Length = 464
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 89/176 (50%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F+ LP DQV LL E L+ A + SLP + L N P
Sbjct: 202 VEWAKYIPAFSELPLDDQVALLRAHAGENLLMGAAKRSLPYKDVLLLGNDFIIPRHCPEV 261
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ ++ A VRVL+ +++ + +D EFACLKA+V F + RGL + +++ ++ Q
Sbjct: 262 EITRVA--VRVLDELVRPLADLSLDANEFACLKAIVFFDPDARGLNNPTKIKQMRSQVMC 319
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG +LL+ ++I ++ I F + ++ LL +M
Sbjct: 320 NLEDYINDRQYDSRGRFGEILLLLPTLQSITWQMIEQIQFVRIFGVARVDNLLQEM 375
>gi|410987325|ref|XP_003999955.1| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 2 [Felis
catus]
Length = 408
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L + +V +
Sbjct: 151 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSM--VYKDILLLGNNYVIHRNSS 208
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + RVL+ +++ F+ + +D E+ACLKA+V F + +GL D ++++N++ Q Q+
Sbjct: 209 EIEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQL 268
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 269 SLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMVKIDNLLQEM 324
>gi|34194038|gb|AAH56550.1| Hnf4a protein [Danio rerio]
Length = 463
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 93/178 (52%), Gaps = 6/178 (3%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAA--VP 60
V+WAK +P+F LP DQV LL E LL A + S+ + L ++H+ P
Sbjct: 199 VEWAKYIPAFCDLPLDDQVALLRAHAGEHLLLGAAKRSM--MYKDILLLGNDHIIPRNCP 256
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+ S+ A VR+L+ ++ F+ + +D E+ACLKA+V F + +GL D +++ ++ Q
Sbjct: 257 ELEVSRVA--VRILDELVLPFQDLQIDDNEYACLKAIVFFDPDAKGLSDPSKIKRMRYQV 314
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
QV L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 315 QVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMAKIDNLLQEM 372
>gi|449472225|ref|XP_002196349.2| PREDICTED: hepatocyte nuclear factor 4-beta-like [Taeniopygia
guttata]
Length = 468
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 90/176 (51%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL + S+P + L N P
Sbjct: 209 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGVAKRSIPYTDFLLLGNDFIIPMHCPEL 268
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ ++ A R+L+ +++ R + +D E+ACLKA++ F + +GL ++ +V+N++ Q QV
Sbjct: 269 EIARVA--TRILDELVKPLRDIQIDDNEYACLKAIIFFDPDCKGLSEAGKVKNMRFQVQV 326
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RF +LL+ ++I ++ + F + ++ LL +M
Sbjct: 327 NLEDYINDRQYDSRGRFSDILLLLPPLQSITWQMIEQVQFVRLFGVARIDSLLQEM 382
>gi|35902797|ref|NP_919349.1| hepatocyte nuclear factor 4-alpha [Danio rerio]
gi|26006393|gb|AAN77281.1|AF473824_1 hepatocyte nuclear factor 4 alpha [Danio rerio]
Length = 454
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 93/178 (52%), Gaps = 6/178 (3%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAA--VP 60
V+WAK +P+F LP DQV LL E LL A + S+ + L ++H+ P
Sbjct: 190 VEWAKYIPAFCDLPLDDQVALLRAHAGEHLLLGAAKRSM--MYKDILLLGNDHIIPRNCP 247
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+ S+ A VR+L+ ++ F+ + +D E+ACLKA+V F + +GL D +++ ++ Q
Sbjct: 248 ELEVSRVA--VRILDELVLPFQDLQIDDNEYACLKAIVFFDPDAKGLSDPSKIKRMRYQV 305
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
QV L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 306 QVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMAKIDNLLQEM 363
>gi|395510982|ref|XP_003759744.1| PREDICTED: hepatocyte nuclear factor 4-gamma [Sarcophilus harrisii]
Length = 455
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 92/176 (52%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L + + +
Sbjct: 198 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSM--MYKDILLLGNNCIIHRNSC 255
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + RVL+ +++ F+ + +D E+ACLKA+V F + +GL D ++++N++ Q Q+
Sbjct: 256 EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPMKIKNMRFQVQI 315
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K + ++ LL +M
Sbjct: 316 SLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLLGMVKIDNLLQEM 371
>gi|120975018|gb|ABM46804.1| NR0B2 [Gorilla gorilla]
Length = 195
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 93/196 (47%), Gaps = 29/196 (14%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN- 61
V + +NLPSF LP +DQ LL+ W LFLL L + + F +E A VP+
Sbjct: 6 VAFLRNLPSFWQLPPQDQRRLLQGCWGPLFLLG-------LAQDAVTFEVAE--APVPSI 56
Query: 62 ------------GKASQ-------TAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKS 102
G + Q + A V+ L L+ F + + P E+ACLK +LF
Sbjct: 57 LKKILLEEPSSSGGSGQLPDRPQPSLASVQWLQCCLESFWSLELSPKEYACLKGTILFNP 116
Query: 103 ETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFF 162
+ GL+ + + +LQ +A L + + PA R R+LL S ++IP++ + +FF
Sbjct: 117 DVPGLQAASHIGHLQQEAHWALCEVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFF 176
Query: 163 AKTVANTSMEKLLCDM 178
+ + + LL DM
Sbjct: 177 RPIIGDVDIASLLGDM 192
>gi|157822005|ref|NP_001102409.1| hepatocyte nuclear factor 4-gamma [Rattus norvegicus]
gi|149048503|gb|EDM01044.1| hepatocyte nuclear factor 4, gamma (predicted) [Rattus norvegicus]
Length = 418
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 91/176 (51%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L + +V +
Sbjct: 161 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSM--MYKDILLLGNHYVIHRNSC 218
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + RVL+ +++ F+ + +D E+ACLKA+V F + +GL D +++N++ Q Q+
Sbjct: 219 EVEVSRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPGKIKNMRFQVQI 278
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 279 SLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMVKIDNLLQEM 334
>gi|431891858|gb|ELK02392.1| Hepatocyte nuclear factor 4-gamma [Pteropus alecto]
Length = 457
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 92/176 (52%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L + +V +
Sbjct: 200 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSM--VYKDILLLGNNYVIHRNSC 257
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + RVL+ +++ F+ + +D E+ACLKA+V F + +GL D ++++N++ Q Q+
Sbjct: 258 EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQL 317
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ +++ ++ I F K ++ LL +M
Sbjct: 318 SLEDYINDRQYDSRGRFGELLLLLPTLQSVTWQMIEQIQFVKLFGMVKIDNLLQEM 373
>gi|403303546|ref|XP_003942387.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Saimiri
boliviensis boliviensis]
Length = 238
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 61/93 (65%)
Query: 86 VDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLM 145
VD AE+ CLKA+ LF + GL D VE+LQ++AQV L ++VR +P+QP RFGRLLL
Sbjct: 131 VDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLR 190
Query: 146 TSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
R +P++ + +FF + V T +E L+ DM
Sbjct: 191 LPALRAVPASLISQLFFMRLVGKTPIETLIRDM 223
>gi|157423601|gb|AAI53624.1| Hnf4a protein [Danio rerio]
Length = 427
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 93/178 (52%), Gaps = 6/178 (3%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAA--VP 60
V+WAK +P+F LP DQV LL E LL A + S+ + L ++H+ P
Sbjct: 163 VEWAKYIPAFCDLPLDDQVALLRAHAGEHLLLGAAKRSM--MYKDILLLGNDHIIPRNCP 220
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+ S+ A VR+L+ ++ F+ + +D E+ACLKA+V F + +GL D +++ ++ Q
Sbjct: 221 ELEVSRVA--VRILDELVLPFQDLQIDDNEYACLKAIVFFDPDAKGLSDPSKIKRMRYQV 278
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
QV L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 279 QVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMAKIDNLLQEM 336
>gi|410916275|ref|XP_003971612.1| PREDICTED: estrogen-related receptor gamma-like [Takifugu rubripes]
Length = 438
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 92/179 (51%), Gaps = 8/179 (4%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
+ WAK++P F +L DQ+ LL+ +W E+ +L + SL L + L A ++V +
Sbjct: 260 IGWAKHIPGFPSLSLADQMSLLQSAWMEILILRVVFRSLGLEDK--LVYAEDYVM---DE 314
Query: 63 KASQTAADVRVLNGVLQ---RFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
+ S+ A + + N +LQ +F+++G++ EF LKA+ L S++ ++D+ V+ LQD
Sbjct: 315 EQSRLAGLLDLNNTILQLVKKFKVMGLEKEEFVLLKAIALANSDSMQIEDTEAVQRLQDV 374
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + HP P R G+L++ R + VQH K M KL ++
Sbjct: 375 LHGALQDYETARHPEDPRRAGKLIMTLPLLRQTAARAVQHFCSIKQDGRVPMHKLFLEL 433
>gi|260808486|ref|XP_002599038.1| hypothetical protein BRAFLDRAFT_245659 [Branchiostoma floridae]
gi|229284314|gb|EEN55050.1| hypothetical protein BRAFLDRAFT_245659 [Branchiostoma floridae]
Length = 198
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 1/177 (0%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
+ + KNLP+F L D+ +LL WS+LF + Q + + P V +
Sbjct: 18 TLTFVKNLPTFGDLCPHDRALLLTSGWSDLFTVGLAQSRVQF-NTEPAGGDRIFVRLRAS 76
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
T +V + ++R +++ +D E + L A +LF + GL D QVE LQ+ A
Sbjct: 77 VDGIPTETEVAKIQNFVERCQVLDLDMKEHSYLMAALLFNPDVPGLADGRQVEILQNSAH 136
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ +P QP RF R+LL R+I V +FF + ME +L DM
Sbjct: 137 QSLNEYTTARYPLQPLRFARILLGLPALRSIKPKIVTELFFRPLIGAIDMEVILTDM 193
>gi|307185619|gb|EFN71557.1| Nuclear receptor subfamily 2 group E member 1 [Camponotus
floridanus]
Length = 373
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 98/199 (49%), Gaps = 32/199 (16%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V WA++L + L DQ+ LLE SW ELFLL A Q LP L+ +PL P G
Sbjct: 184 VHWARDLAAGTNLVLEDQLTLLECSWRELFLLAAAQM-LPTLDPTPLLP--------PQG 234
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRG---------------- 106
A +V L F + +D EFAC++A+VLFK+
Sbjct: 235 IG--LAIEVTRFRETLAGFNAMHLDQHEFACIRAIVLFKAGLDSESVSSNRSTSSSNSPG 292
Query: 107 ----LKDSLQVENLQDQAQVMLAQHVRTHH-PAQPARFGRLLLMTSQCRNIPSARVQHIF 161
L+D V L+D AQ+ L Q + + A RFG+LLL+ R++ + ++ +F
Sbjct: 293 PGSRLRDPASVARLRDSAQLALGQRLNSASLGAGTLRFGKLLLLLPSLRSVSTHAIEELF 352
Query: 162 FAKTVANTSMEKLLCDMYK 180
F +T+ +E+++CDMYK
Sbjct: 353 FRRTIGIIPIERIICDMYK 371
>gi|47217208|emb|CAG11044.1| unnamed protein product [Tetraodon nigroviridis]
Length = 333
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 89/179 (49%), Gaps = 8/179 (4%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
+ WAK++P F+ L DQ+ LL+ +W E+ +L + SL + L A +++ +
Sbjct: 105 IGWAKHIPGFSTLSLADQMSLLQSAWMEILILRVVYRSLSFEDK--LVYAEDYIM---DE 159
Query: 63 KASQTAADVRVLNGVLQ---RFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
S+ A + + N +LQ ++R + ++ EF LKA+ L S++ ++D V+ LQD
Sbjct: 160 DQSKLAGLLDLNNAILQLVKKYRTMKLEKEEFVTLKAIALANSDSMHIEDVDAVQKLQDV 219
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + H P R G+LL+ R I + VQH + K M KL ++
Sbjct: 220 LHEALQDYEASQHQEDPRRAGKLLMTLPLLRQISTKAVQHFYSIKQDGKVPMHKLFLEL 278
>gi|13259503|ref|NP_068804.1| nuclear receptor subfamily 0 group B member 2 [Homo sapiens]
gi|9978744|sp|Q15466.2|NR0B2_HUMAN RecName: Full=Nuclear receptor subfamily 0 group B member 2;
AltName: Full=Orphan nuclear receptor SHP; AltName:
Full=Small heterodimer partner
gi|15787843|dbj|BAB68530.1| small heterodimer partner [Homo sapiens]
gi|20987404|gb|AAH30207.1| Nuclear receptor subfamily 0, group B, member 2 [Homo sapiens]
gi|60812464|gb|AAX36213.1| nuclear receptor subfamily 0 group B member 2 [synthetic construct]
gi|61354784|gb|AAX41058.1| nuclear receptor subfamily 0 group B member 2 [synthetic construct]
gi|119628186|gb|EAX07781.1| nuclear receptor subfamily 0, group B, member 2 [Homo sapiens]
gi|325495477|gb|ADZ17344.1| nuclear receptor SHP [Homo sapiens]
Length = 257
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 94/191 (49%), Gaps = 19/191 (9%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLP---------------LLESS 47
V + +NLPSF LP +DQ LL+ W LFLL Q ++ LLE
Sbjct: 67 VAFLRNLPSFWQLPPQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVPSILKKILLEEP 126
Query: 48 PLFNASEHVAAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGL 107
++S +P+ + + A V+ L L+ F + + P E+ACLK +LF + GL
Sbjct: 127 ---SSSGGSGQLPD-RPQPSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVPGL 182
Query: 108 KDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVA 167
+ + + +LQ +A +L + + PA R R+LL S ++IP++ + +FF +
Sbjct: 183 QAASHIGHLQQEAHWVLCEVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPIIG 242
Query: 168 NTSMEKLLCDM 178
+ + LL DM
Sbjct: 243 DVDIAGLLGDM 253
>gi|55140659|gb|AAV41874.1| tailless [Musca domestica]
Length = 442
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 101/202 (50%), Gaps = 28/202 (13%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
+ W KN+PSF LP DQ+ LLE+SW E F+L Q+ +P+ + LF + + PN
Sbjct: 239 INWIKNVPSFGELPLPDQLQLLEDSWKEFFILAMAQYLMPMNFTQLLF---VYESENPNR 295
Query: 63 KASQ-TAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK-------------------- 101
+ +V VL + + +D E+ ++A+ LF+
Sbjct: 296 DVTGLVTREVHAFQDVLNQLCHLNIDSHEYELIRALTLFRRPGSDDLANSSLSTSNGSPN 355
Query: 102 ----SETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARV 157
+E+RGL +S ++ L D+++ L ++ HP QP RF ++ + +Q + S +
Sbjct: 356 SSISAESRGLIESTKIAALHDESRNALIGYIARLHPGQPMRFQSIMSVLTQMHKVSSFAI 415
Query: 158 QHIFFAKTVANTSMEKLLCDMY 179
+ +FF KT+ + ++ +L+ DMY
Sbjct: 416 EELFFRKTIGDITIVRLIGDMY 437
>gi|6016234|sp|P79926.1|HNF4B_XENLA RecName: Full=Hepatocyte nuclear factor 4-beta; Short=HNF-4-beta;
AltName: Full=Nuclear receptor subfamily 2 group A
member 3
gi|1771970|emb|CAA89991.1| hepatocyte nuclear factor 4 beta (HNF4 beta) [Xenopus laevis]
Length = 446
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 88/183 (48%), Gaps = 18/183 (9%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLP-----LLESS---PLFNA 52
+ V+WAK +P+F LP DQV LL LL + SLP LL + P+
Sbjct: 187 LLVEWAKYIPAFCELPLDDQVALLRAHAGAHLLLGVAKRSLPYKDFLLLGNDFIMPMHCP 246
Query: 53 SEHVAAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQ 112
+A VP R+L+ +++ R + +D E+ CLKA++ F + +GL D +
Sbjct: 247 ELEIARVP----------CRILDELVKPLREIQIDDNEYVCLKAIIFFDPDCKGLSDQTK 296
Query: 113 VENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSME 172
V+N++ Q QV L ++ RF +LL+ ++I ++ + FAK ++
Sbjct: 297 VKNMRFQVQVNLEDYINDRQFDSRGRFSDILLLLPPLQSITWQMIEQVQFAKLFGVARID 356
Query: 173 KLL 175
LL
Sbjct: 357 SLL 359
>gi|426328522|ref|XP_004025301.1| PREDICTED: nuclear receptor subfamily 0 group B member 2 [Gorilla
gorilla gorilla]
Length = 257
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 93/191 (48%), Gaps = 19/191 (9%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLP---------------LLESS 47
V + +NLPSF LP +DQ LL+ W LFLL Q ++ LLE
Sbjct: 67 VAFLRNLPSFWQLPPQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVPSILKKILLEEP 126
Query: 48 PLFNASEHVAAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGL 107
++S +P+ + + A V+ L L+ F + + P E+ACLK +LF + GL
Sbjct: 127 ---SSSGGSGQLPD-RPQPSLASVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVPGL 182
Query: 108 KDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVA 167
+ + + +LQ +A L + + PA R R+LL S ++IP++ + +FF +
Sbjct: 183 QAASHIGHLQQEAHWALCEVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPIIG 242
Query: 168 NTSMEKLLCDM 178
+ + LL DM
Sbjct: 243 DVDIASLLGDM 253
>gi|348539244|ref|XP_003457099.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like [Oreochromis
niloticus]
Length = 454
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 92/178 (51%), Gaps = 6/178 (3%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAA--VP 60
V+WAK +P+F LP DQV LL E LL A + S+ L L ++H+ P
Sbjct: 190 VEWAKYIPAFCDLPLDDQVALLRAHAGEHLLLGAAKRSM--LYKDILLLGNDHIIPRNCP 247
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+ + A VR+L+ ++ F+ + +D E+ACLKA+V F + +GL D +++ ++ Q
Sbjct: 248 ELEVGRVA--VRILDELVLPFQELQIDDNEYACLKAIVFFDPDAKGLSDPGKIKRMRYQV 305
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
QV L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 306 QVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMAKIDNLLQEM 363
>gi|313767044|gb|ADR80691.1| nuclear receptor superfamily subfamily 0 group B member 1
[Epinephelus coioides]
Length = 296
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 90/191 (47%), Gaps = 13/191 (6%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQ-----WSLPLLESSPL------- 49
+++ KN+P F LP DQ++L+ W+ L +L Q + +E S L
Sbjct: 103 TLRFVKNVPCFRELPEDDQLMLIRSGWAPLLVLGLAQDRVDFETTETVEPSMLQRILTGV 162
Query: 50 -FNASEHVAAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLK 108
SE +A G A + D+ + L++ V + E+A LK VLF + GL+
Sbjct: 163 PDRQSEVLAGQSRGAAGVSVVDIEAIKAFLKKCWSVDISTKEYAYLKGAVLFNPDVEGLR 222
Query: 109 DSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVAN 168
+++L+ +A L +HVR H RF +LL+ S R I V +FF +
Sbjct: 223 CLHYIQSLRREAHQALNEHVRLIHREDTTRFAKLLIALSMLRAISPPVVAQLFFRPVIGT 282
Query: 169 TSMEKLLCDMY 179
S+E++L +M+
Sbjct: 283 VSIEEVLMEMF 293
>gi|1374879|gb|AAC41998.1| nuclear hormone receptor, partial [Homo sapiens]
Length = 256
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 94/191 (49%), Gaps = 19/191 (9%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLP---------------LLESS 47
V + +NLPSF LP +DQ LL+ W LFLL Q ++ LLE
Sbjct: 66 VAFLRNLPSFWQLPPQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVPSILKKILLEEP 125
Query: 48 PLFNASEHVAAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGL 107
++S +P+ + + A V+ L L+ F + + P E+ACLK +LF + GL
Sbjct: 126 ---SSSGGSGQLPD-RPQPSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVPGL 181
Query: 108 KDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVA 167
+ + + +LQ +A +L + + PA R R+LL S ++IP++ + +FF +
Sbjct: 182 QAASHIGHLQQEAHWVLCEVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPIIG 241
Query: 168 NTSMEKLLCDM 178
+ + LL DM
Sbjct: 242 DVDIAGLLGDM 252
>gi|213512096|ref|NP_001134122.1| nuclear receptor subfamily 0 group B member 2 [Salmo salar]
gi|209730864|gb|ACI66301.1| Nuclear receptor subfamily 0 group B member 2 [Salmo salar]
Length = 256
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 86/186 (46%), Gaps = 12/186 (6%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPL-LESSP--------LFNA 52
+ + KNLP+F LP DQ+ LL+ W LF+L Q + + +P L N+
Sbjct: 70 TIHFMKNLPAFNQLPLNDQLSLLQSCWVPLFILGLAQEGMNFDIIDTPADSMLKRILLNS 129
Query: 53 SEHVAAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQ 112
E + T V L L++F + + P E+A LK ++F + + LK +
Sbjct: 130 QESSEM---EREQPTLTGVNKLKSCLKKFWSLDLSPKEYAYLKGTMIFNPDVKDLKAAQF 186
Query: 113 VENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSME 172
VE+LQ +AQ L + V+ HPA RF +LL S + I + +FF + +
Sbjct: 187 VEDLQQEAQHALREVVQPLHPADLGRFAGILLAASTLKTITPNLITELFFRPVIGQADLL 246
Query: 173 KLLCDM 178
L DM
Sbjct: 247 DFLVDM 252
>gi|350420018|ref|XP_003492371.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Bombus impatiens]
Length = 405
Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 98/198 (49%), Gaps = 30/198 (15%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V WAK L + L DQ+ LLE SW ELFLL A Q LP L+ + L + H ++
Sbjct: 216 VHWAKELAAGTGLVLEDQLTLLEFSWRELFLLAAAQI-LPTLDPTTLLPPAPHGLSL--- 271
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK--------------------S 102
A +V L F + +D EFAC++A+VLFK S
Sbjct: 272 -----AVEVNRFRETLAGFHAMNLDQHEFACIRAIVLFKAGLDSEPTPSSRSSTGSASPS 326
Query: 103 ETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFF 162
L+D+ V L+D AQ+ L Q + + RFG+LLL+ R++ + ++ +FF
Sbjct: 327 VGSRLRDAAAVARLRDGAQLALGQRL-SGASLGALRFGKLLLLLPSLRSVSTHAIEELFF 385
Query: 163 AKTVANTSMEKLLCDMYK 180
+T+ +E+++CDMYK
Sbjct: 386 RRTIGIIPIERIICDMYK 403
>gi|332245128|ref|XP_003271715.1| PREDICTED: nuclear receptor subfamily 0 group B member 2 [Nomascus
leucogenys]
Length = 257
Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 93/191 (48%), Gaps = 19/191 (9%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLP---------------LLESS 47
V + +NLPSF LP +DQ LL+ W LFLL Q ++ LLE
Sbjct: 67 VAFLRNLPSFWQLPPQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVPSILKKILLEEP 126
Query: 48 PLFNASEHVAAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGL 107
++S +P+ + + A V+ L L+ F + + P E+ACLK +LF + GL
Sbjct: 127 ---SSSGGSGQLPD-RPQPSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVPGL 182
Query: 108 KDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVA 167
+ + + +LQ +A L + + PA R R+LL S ++IP++ + +FF +
Sbjct: 183 QAASHIGHLQQEAHWALCEVLEPWCPAAQGRLARVLLTASTLKSIPTSLLGDLFFRPIIG 242
Query: 168 NTSMEKLLCDM 178
+ + LL DM
Sbjct: 243 DVDIAGLLGDM 253
>gi|57116110|gb|AAW33564.1| small heterodimer partner [Gallus gallus]
Length = 262
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 88/184 (47%), Gaps = 7/184 (3%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPL-LESSPLFNASEHVAAVP 60
+ + KNLPSF LP DQ++LL+ W LFLL +Q + + +P + E +
Sbjct: 62 TISFMKNLPSFHLLPRGDQLLLLDSCWVPLFLLGLVQEMVTFEVMETPAPSMLEKILLDG 121
Query: 61 NGKASQTA------ADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVE 114
K + A V+ L L F + + P E+A LK +LF + GL S
Sbjct: 122 QSKRQEPEWTQPMLAAVQWLQCSLNTFWSLDLSPKEYAYLKGAILFNPDVPGLTASCTSR 181
Query: 115 NLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKL 174
+A+ L + V+ HP RF +LL+TS ++IP A + +FF + N + +L
Sbjct: 182 ASMREAERALQEVVQILHPKDQDRFALILLITSTLKSIPPALITDLFFRPIIGNADIVEL 241
Query: 175 LCDM 178
+ DM
Sbjct: 242 IVDM 245
>gi|154757671|gb|AAI51654.1| HNF4G protein [Bos taurus]
Length = 408
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L + +V +
Sbjct: 151 VEWAKYIPAFCELPLDDQVALLRAHAGEHSLLGATKRSM--MYKDILLLGNNYVIHRNSC 208
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + RVL+ +++ F+ + +D E+ACLKA+V F + +GL D ++++N++ Q Q+
Sbjct: 209 EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQL 268
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 269 SLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMVKIDNLLQEM 324
>gi|76364252|gb|ABA41640.1| retinoic X receptor-like protein [Strongylocentrotus purpuratus]
Length = 307
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 82/163 (50%), Gaps = 13/163 (7%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSEL----FLLNAIQWSLPLLESSPLF--NASEHV 56
V+WAK +P F LP DQV LL W+EL F +IQ +L ++ L S H
Sbjct: 139 VEWAKRIPHFTELPLDDQVTLLRAGWNELLIAAFSHRSIQVKDGILLATGLHVHRNSAHS 198
Query: 57 AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENL 116
A V T D RVL ++ + R + +D E CL+A+VLF + + L +VE L
Sbjct: 199 AGVG------TIFD-RVLTELVAKMREMKMDKTELGCLRAIVLFNPDAKNLTSVQKVEEL 251
Query: 117 QDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQH 159
+++ L ++ R + +P RF +LLL R+I ++H
Sbjct: 252 REKVYASLEEYCRNQYTDEPGRFAKLLLRLPALRSIGLKCLEH 294
>gi|301618490|ref|XP_002938647.1| PREDICTED: estrogen-related receptor gamma-like [Xenopus (Silurana)
tropicalis]
Length = 441
Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 87/176 (49%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
+ WAK++P F++L DQ+ LL+ +W E+ LL + SLP E L A +++
Sbjct: 263 IGWAKHIPGFSSLSLGDQMSLLQGAWMEILLLGVVFRSLPYQEG--LVYAEDYIMDEVQS 320
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ S + ++QR+R + +D E+ LKA+ L S+ ++D ++ LQD Q
Sbjct: 321 RMSGLRDLYLCILQLVQRYRKLHMDKEEYVTLKALALANSDAVHIEDIQSIQKLQDVLQE 380
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L +H + H +P R G+LLL R S VQH + M KL +M
Sbjct: 381 ALQEHESSQHWEEPQRAGQLLLTLPLLRQTASRVVQHFHAIRAQGRVPMHKLFLEM 436
>gi|348571110|ref|XP_003471339.1| PREDICTED: nuclear receptor subfamily 0 group B member 2-like
[Cavia porcellus]
Length = 258
Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 91/191 (47%), Gaps = 19/191 (9%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLP---------------LLESS 47
V + +NLPSF LP +DQ LL+ W LFLL Q ++ LLE
Sbjct: 68 VAFLRNLPSFCQLPPQDQRCLLQRCWGPLFLLGLAQDTVTFEVAEAPVPSILKKILLEEP 127
Query: 48 PLFNASEHVAAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGL 107
++S A +P+ + + A V+ L L+ F + + P E+A LK +LF + GL
Sbjct: 128 ---SSSAGSAQLPD-RPQPSLAAVQWLQCCLESFWSLELGPKEYAYLKGTILFNPDVPGL 183
Query: 108 KDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVA 167
S + LQ +A L + + +PA R R+LL S ++IP + + +FF +
Sbjct: 184 HASAHIGRLQQEAHWALCEVLEPWYPAGQGRLARVLLTASTLKSIPPSLLGDLFFRPIIG 243
Query: 168 NTSMEKLLCDM 178
+ + LL DM
Sbjct: 244 DVDIAGLLEDM 254
>gi|327271760|ref|XP_003220655.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 1 [Anolis
carolinensis]
Length = 465
Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 95/181 (52%), Gaps = 11/181 (6%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L ++H+ +P
Sbjct: 199 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGAAKRSMVFKDI--LLLGNDHI--IPRN 254
Query: 63 -----KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQ 117
+ S+ A VR+L+ ++ F+ + +D E+ACLKA++ F + +GL D ++++ ++
Sbjct: 255 CPELLEISRVA--VRILDELVLTFQELQIDDNEYACLKAIIFFDPDAKGLSDPIKIKRMR 312
Query: 118 DQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCD 177
Q QV L ++ RFG LLL+ ++I ++ I F K ++ LL +
Sbjct: 313 YQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMAKIDNLLQE 372
Query: 178 M 178
M
Sbjct: 373 M 373
>gi|332020205|gb|EGI60649.1| Transcription factor HNF-4-like protein [Acromyrmex echinatior]
Length = 440
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 5/182 (2%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
++WAK F AL DQV LL E LL + S + L N + P G
Sbjct: 179 IEWAKCFDEFKALSLDDQVALLRAHAGEHLLLGVARRSRNFTDVLLLGNDCIIMRNCPEG 238
Query: 63 KASQTAADV-----RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQ 117
Q D+ RV++ +++ F+ + +D EFA LKA+V F +GL D V L+
Sbjct: 239 SNQQDNLDISKVGIRVMDELVKPFQKIKIDDTEFAFLKAIVFFDPNAKGLSDQKTVRELR 298
Query: 118 DQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCD 177
Q+ L H+ H P FG +LLM ++I V+ I F + ++ LL +
Sbjct: 299 HNIQIKLENHISDHRCDLPGHFGDILLMLPALQSISWQMVEQIQFVRLFGVAHIDNLLQE 358
Query: 178 MY 179
++
Sbjct: 359 IF 360
>gi|327271762|ref|XP_003220656.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 2 [Anolis
carolinensis]
Length = 475
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 95/181 (52%), Gaps = 11/181 (6%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L ++H+ +P
Sbjct: 199 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGAAKRSMVFKDI--LLLGNDHI--IPRN 254
Query: 63 -----KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQ 117
+ S+ A VR+L+ ++ F+ + +D E+ACLKA++ F + +GL D ++++ ++
Sbjct: 255 CPELLEISRVA--VRILDELVLTFQELQIDDNEYACLKAIIFFDPDAKGLSDPIKIKRMR 312
Query: 118 DQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCD 177
Q QV L ++ RFG LLL+ ++I ++ I F K ++ LL +
Sbjct: 313 YQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMAKIDNLLQE 372
Query: 178 M 178
M
Sbjct: 373 M 373
>gi|383856816|ref|XP_003703903.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Megachile rotundata]
Length = 397
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 96/198 (48%), Gaps = 30/198 (15%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V WA++L + L DQ+ LLE SW ELFLL A Q LP L+ + L P
Sbjct: 208 VHWARDLAAGTNLALEDQLTLLESSWRELFLLAAAQI-LPTLDPTALLP--------PGP 258
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK--------------------S 102
+ A +V L F + +D EFAC++A+VLFK S
Sbjct: 259 QGLGLAVEVNRFKETLAGFHAMSLDQHEFACIRAIVLFKAGLDSEPLPSSRSSNGSASPS 318
Query: 103 ETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFF 162
L+D V L+D AQ+ L Q + + RFG+LLL+ R++ + ++ +FF
Sbjct: 319 TGSRLRDPAAVARLRDGAQLALGQRL-SGASFGALRFGKLLLLLPSLRSVSTHAIEELFF 377
Query: 163 AKTVANTSMEKLLCDMYK 180
+T+ +E+++CDMYK
Sbjct: 378 RRTIGIIPIERIICDMYK 395
>gi|301607256|ref|XP_002933229.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like [Xenopus
(Silurana) tropicalis]
Length = 420
Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 89/176 (50%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L N P
Sbjct: 155 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMMYKDILLLGNDRVIPRNCPEL 214
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + A VR+L+ ++ F+ + +D E+ACLKA++ F + +GL D +++ ++ Q QV
Sbjct: 215 EVGRVA--VRILDELVLPFQELQIDDNEYACLKAIIFFDPDAKGLSDPTKIKRMRYQVQV 272
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 273 SLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMAKIDNLLQEM 328
>gi|60892894|gb|AAX37293.1| nuclear receptor usp/RXR, partial [Caliroa cerasi]
Length = 258
Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 73/142 (51%), Gaps = 7/142 (4%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK++P F +LP DQV LL W+EL + S+ + + L V +
Sbjct: 105 VEWAKHIPHFTSLPLEDQVHLLRAGWNELLIAAFSHRSIEVRDGIVLATG----LTVYSD 160
Query: 63 KASQTAADV---RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
A Q + RVL ++ + R + +D E CL++++LF + RGLK +VE L+++
Sbjct: 161 SARQAGVNTIFERVLTELVAKMREMKMDKTELGCLRSIILFNPDVRGLKSRQEVELLREK 220
Query: 120 AQVMLAQHVRTHHPAQPARFGR 141
L ++ R P +P RF +
Sbjct: 221 VYAALEEYTRAARPDEPGRFAK 242
>gi|114554971|ref|XP_001146990.1| PREDICTED: nuclear receptor subfamily 0 group B member 2 [Pan
troglodytes]
gi|397476159|ref|XP_003809477.1| PREDICTED: nuclear receptor subfamily 0 group B member 2 [Pan
paniscus]
Length = 257
Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 93/191 (48%), Gaps = 19/191 (9%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLP---------------LLESS 47
V + +NLPSF LP +DQ LL+ W LFLL Q ++ LLE
Sbjct: 67 VAFLRNLPSFWQLPPQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVPSILKKILLEEP 126
Query: 48 PLFNASEHVAAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGL 107
++S +P+ + + A V+ L L+ F + + P E+ACLK +LF + GL
Sbjct: 127 ---SSSGGSGQLPD-RPQPSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVPGL 182
Query: 108 KDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVA 167
+ + + +LQ +A L + + PA R R+LL S ++IP++ + +FF +
Sbjct: 183 QAASHIGHLQQEAHWALCEVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPIIG 242
Query: 168 NTSMEKLLCDM 178
+ + LL DM
Sbjct: 243 DVDIAGLLGDM 253
>gi|322795773|gb|EFZ18452.1| hypothetical protein SINV_10428 [Solenopsis invicta]
Length = 441
Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 83/181 (45%), Gaps = 4/181 (2%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
++WAK F AL DQV LL E LL + S + L N + P G
Sbjct: 181 IEWAKCFDEFKALSLDDQVALLRAHAGEHLLLGVARRSRNFTDVLLLGNDCIIMRNCPEG 240
Query: 63 KASQ----TAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQD 118
Q + +RV++ +++ F+ + +D EFA LKA+V F +GL D V L+
Sbjct: 241 NNQQDLDISKVGIRVMDELVKPFQKIKIDDTEFAFLKAIVFFDPNAKGLSDQKTVRELRH 300
Query: 119 QAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
Q+ L H+ H P FG +LLM ++I V+ I F + ++ LL ++
Sbjct: 301 NIQIKLENHISDHRCDLPGHFGDILLMLPALQSISWQMVEQIQFVRLFGVAHIDNLLQEI 360
Query: 179 Y 179
+
Sbjct: 361 F 361
>gi|260835009|ref|XP_002612502.1| hypothetical protein BRAFLDRAFT_75376 [Branchiostoma floridae]
gi|229297879|gb|EEN68511.1| hypothetical protein BRAFLDRAFT_75376 [Branchiostoma floridae]
Length = 486
Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 90/176 (51%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL + S+ L + L N P
Sbjct: 199 VEWAKYIPTFCELPLDDQVALLRAHAGEHLLLGVARRSMALKDCLLLGNDFIIPRNSPEI 258
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ S+ A RVL+ +++ V +D +EFACLKA+V F + +GL + ++++++ Q Q+
Sbjct: 259 EVSRIAC--RVLDELVKPLVEVAIDDSEFACLKALVFFDPDAKGLSERGKIKSMRYQVQL 316
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG +LL+ ++I ++ FAK ++ LL +M
Sbjct: 317 NLEDYINDRQYESSRRFGEILLLLPTLQSITWQMIEQGQFAKLFGVAKIDNLLQEM 372
>gi|347968055|ref|XP_003436151.1| AGAP002544-PB [Anopheles gambiae str. PEST]
gi|333468185|gb|EGK96862.1| AGAP002544-PB [Anopheles gambiae str. PEST]
Length = 717
Score = 82.4 bits (202), Expect = 7e-14, Method: Composition-based stats.
Identities = 53/149 (35%), Positives = 75/149 (50%), Gaps = 15/149 (10%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL WSELF+LNA Q S+PL + L A H + +
Sbjct: 324 AVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAA 383
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSL---------- 111
+ +R+ +++ + + VD AE++CLKA+VLF T L DSL
Sbjct: 384 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFT--TGKLLDSLFGDVHALLAS 441
Query: 112 ---QVENLQDQAQVMLAQHVRTHHPAQPA 137
Q+ LQ + VM V + A A
Sbjct: 442 TSTQLHTLQSEPDVMHLVQVHLYRTATNA 470
>gi|340712958|ref|XP_003395019.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Bombus terrestris]
Length = 405
Score = 82.4 bits (202), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 98/198 (49%), Gaps = 30/198 (15%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V WAK L + L DQ+ LLE SW ELFLL A Q LP L+ + L + H ++
Sbjct: 216 VHWAKELAAGTTLVLEDQLTLLEFSWRELFLLAAAQI-LPTLDPTTLLPPAPHGLSL--- 271
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKS-------------------- 102
A +V L F + +D EFAC++A+VLFK+
Sbjct: 272 -----AVEVNRFRETLAGFHAMNLDQHEFACIRAIVLFKAGLDSEPTPSSRSSSGSASPS 326
Query: 103 ETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFF 162
L+D+ V L+D AQ+ L Q + + RFG+LLL+ R++ + ++ +FF
Sbjct: 327 VGSRLRDAAAVARLRDGAQLALGQRL-SGASLGALRFGKLLLLLPSLRSVSTHAIEELFF 385
Query: 163 AKTVANTSMEKLLCDMYK 180
+T+ +E+++CDMYK
Sbjct: 386 RRTIGIIPIERIICDMYK 403
>gi|328782478|ref|XP_001121187.2| PREDICTED: protein tailless [Apis mellifera]
Length = 400
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 97/198 (48%), Gaps = 30/198 (15%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V WA++L L DQ+ LLE SW ELFLL A Q LP L+ +PL P
Sbjct: 211 VHWARDLAVGTNLVIEDQLTLLESSWRELFLLAAAQI-LPTLDPTPLLP--------PGP 261
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRG---------------- 106
+ A +V L F + +D E+AC++A+VLFK+
Sbjct: 262 QGLGLAVEVTRFRETLAGFHAMSLDQHEYACIRAIVLFKAGLDSEPLPSSRSSNGSTSPN 321
Query: 107 ----LKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFF 162
L+D+ V L+D AQ+ L Q + + RFG+LLL+ R++ + ++ +FF
Sbjct: 322 TGSRLRDAAAVARLRDGAQLALGQRL-SGASFGALRFGKLLLLLPSLRSVSAHAIEELFF 380
Query: 163 AKTVANTSMEKLLCDMYK 180
+T+ +E+++CDMYK
Sbjct: 381 RRTIGIIPIERIICDMYK 398
>gi|391333770|ref|XP_003741283.1| PREDICTED: protein tailless-like [Metaseiulus occidentalis]
Length = 411
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 90/193 (46%), Gaps = 21/193 (10%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
+ V + K L ++LP DQ+ LLE SWSELFL+ A Q L L + L +
Sbjct: 226 LNVSYLKTLTQLSSLPLSDQLFLLESSWSELFLITATQMGLCLRSAMMLLPDTT------ 279
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKS-----------ETRGLKD 109
K T ++ + V + R +D E LK V LF TR L +
Sbjct: 280 --KDKWTPQEINEMISVQTQLRQQALDDTECLLLKTVTLFSPPSTLRASPLSVSTRRLHE 337
Query: 110 SLQVE-NLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVAN 168
V+ +L+D + + + +RT+ P Q R L M R + +Q +FF KT+ +
Sbjct: 338 VQAVQRHLEDVKRTLQSHDIRTY-PNQIRRADSALDMVPLLRTVSREFIQDLFFRKTIGD 396
Query: 169 TSMEKLLCDMYKN 181
++E+LLCDMYK
Sbjct: 397 AAIERLLCDMYKG 409
>gi|148886627|sp|Q91766.2|HNF4A_XENLA RecName: Full=Hepatocyte nuclear factor 4-alpha; Short=HNF-4-alpha;
AltName: Full=Nuclear receptor subfamily 2 group A
member 1
Length = 464
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 89/176 (50%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L N P
Sbjct: 199 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMMFKDILLLGNDRLIPRNCPEL 258
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + A VR+L+ ++ F+ + +D E+ACLKA++ F + +GL D +++ ++ Q QV
Sbjct: 259 EVGRVA--VRILDELVLPFQELQIDDNEYACLKAIIFFDPDAKGLSDPTKIKRMRYQVQV 316
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 317 SLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMAKIDNLLQEM 372
>gi|5881250|gb|AAD55095.1|AF180295_1 DAX1 homolog, partial [Alligator mississippiensis]
Length = 245
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 92/184 (50%), Gaps = 17/184 (9%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN- 61
+++ K +P F LP +Q++L+ +W+ L +L Q + L H AA P+
Sbjct: 66 LRFVKGVPCFQQLPLAEQLVLVRAAWAPLLVLGLAQDGVAL---------PAHEAAQPSM 116
Query: 62 -------GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVE 114
AAD++ L+GVL + + + P E+A LK VLF + GL+ + ++
Sbjct: 117 LQRILTARPPPPPAADLQALHGVLAKCWSLDIGPKEYAYLKGAVLFNPDLPGLQCTQYIQ 176
Query: 115 NLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKL 174
LQ +AQ L +HVR H ARF +L + S R+I + + +FF + +M+ +
Sbjct: 177 GLQREAQQALNEHVRLIHRGDQARFAKLNIALSLLRSINANVIAELFFRPIIGTVNMDDM 236
Query: 175 LCDM 178
L +M
Sbjct: 237 LLEM 240
>gi|357631166|gb|EHJ78814.1| SXR-like nuclear receptor [Danaus plexippus]
Length = 497
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 86/180 (47%), Gaps = 6/180 (3%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFN----ASEHVAA 58
V+WAK +P+F L DQV LL E LL + SL L + L N H+
Sbjct: 224 VEWAKYIPAFTELHLDDQVALLRAHAGEHLLLGCARRSLHLRDVLLLGNNCIITKHHLDG 283
Query: 59 VPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQD 118
+ S +RV++ +++ R + +D EFACLKA+V F +GL +++ L+
Sbjct: 284 RMDIDISMIG--MRVMDEIVKPLREIDIDDTEFACLKAIVFFDPNAKGLSQPQKIKQLRY 341
Query: 119 QAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
Q Q+ L ++ RFG LLL ++I ++ I FAK ++ LL +M
Sbjct: 342 QIQINLEDYISDRQYDGRGRFGELLLCLPPLQSITWQMIEQIQFAKLFGVAHIDSLLQEM 401
>gi|326675851|ref|XP_001333980.4| PREDICTED: estrogen-related receptor gamma, partial [Danio rerio]
Length = 224
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 86/176 (48%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
+ WAK++P F++L DQ+ LL+ +W E+ +L+ + SLP L A ++V +
Sbjct: 46 IGWAKHIPGFSSLSLGDQMSLLQSAWMEILILSIVFRSLPY--EDELVYAEDYVMDEEHS 103
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + + ++++++ + V+ EF LKA+ L S++ ++D V+ LQD
Sbjct: 104 RLTGLLDLYLSILQLVRKYKKLKVEKEEFVTLKAIALANSDSMHIEDVESVQKLQDALHE 163
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + H P R G+LL+ R + +QH + K M KL +M
Sbjct: 164 ALQDYESCQHAEDPRRAGKLLMTLPLLRQTATKAIQHFYSIKMQGKVPMHKLFLEM 219
>gi|391333983|ref|XP_003741389.1| PREDICTED: transcription factor HNF-4 homolog [Metaseiulus
occidentalis]
Length = 648
Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 87/176 (49%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK+LP F+ L DQV LL E LL + S+ + + L N P
Sbjct: 398 VEWAKSLPCFSELHLDDQVALLRAHAGEHLLLGVARRSMAVKDVLLLGNDFLMPRNTPQ- 456
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A + RV++ ++ R V VD EFACLKA+V F RGL + +++ L+ Q Q
Sbjct: 457 EADLSCIGARVMDELIIPLREVHVDDTEFACLKAIVFFDPNARGLSEPNKIKALRHQVQT 516
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG +LL+ +I ++ I AKT+ N ++ LL +M
Sbjct: 517 CLEDYINDRQYDSRGRFGEILLLLPTLLSITRQMIEMIQMAKTLNNARVDSLLQEM 572
>gi|380023918|ref|XP_003695756.1| PREDICTED: transcription factor HNF-4 homolog [Apis florea]
Length = 449
Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 86/179 (48%), Gaps = 3/179 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F+ L DQV LL E LL + S+ L + L N P G
Sbjct: 178 VQWAKYIPAFSELTLDDQVALLRAHAGEHLLLGVARRSMQLQDVLLLGNNCIITKNCPEG 237
Query: 63 KASQ---TAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
+ + +RV++ +++ V +D EFACLKA+V F +GL + +++ L+ Q
Sbjct: 238 RNQDLDISKVGIRVMDELVKPLNEVQIDDTEFACLKAIVFFDPNAKGLSEPQRIKQLRYQ 297
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
Q+ L ++ RFG +LL ++I ++ I F + ++ LL +M
Sbjct: 298 IQINLEDYISDRQYDSRGRFGEILLTLPALQSISWQMIEQIQFVRLFGVAHIDNLLQEM 356
>gi|348563847|ref|XP_003467718.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 1 [Cavia
porcellus]
Length = 474
Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 89/179 (49%), Gaps = 7/179 (3%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFN---ASEHVAAV 59
V+WAK +P+F LP DQV LL E LL A + S+ + L N H +
Sbjct: 199 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGNDYIVPRHCPEL 258
Query: 60 PNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
A + VR+L+ ++ F+ + +D E+ACLKA++ F + +GL D +++ L+ Q
Sbjct: 259 ----AEMSRVSVRILDELVLPFQELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQ 314
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
QV L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 315 VQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFGMAKIDNLLQEM 373
>gi|340726817|ref|XP_003401749.1| PREDICTED: transcription factor HNF-4 homolog isoform 1 [Bombus
terrestris]
Length = 453
Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 86/179 (48%), Gaps = 3/179 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F+ L DQV LL E LL + S+ L + L N P G
Sbjct: 182 VEWAKYIPAFSELTLDDQVALLRAHAGEHLLLGVARRSMQLQDVLLLGNNCIITKNCPEG 241
Query: 63 KASQ---TAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
+ + +RV++ +++ V +D EFACLKA+V F +GL + +++ L+ Q
Sbjct: 242 RNQDLDISKVGIRVMDELVKPLNEVQIDDTEFACLKAIVFFDPNAKGLSEPQRIKQLRYQ 301
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
Q+ L ++ RFG +LL ++I ++ I F + ++ LL +M
Sbjct: 302 IQINLEDYISDRQYDSRGRFGEILLTLPALQSISWQMIEQIQFVRLFGVAHIDNLLQEM 360
>gi|410953684|ref|XP_003983500.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Felis
catus]
Length = 474
Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 89/179 (49%), Gaps = 7/179 (3%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFN---ASEHVAAV 59
V+WAK +P+F LP DQV LL E LL A + S+ + L N H +
Sbjct: 199 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGNDYIVPRHCPEL 258
Query: 60 PNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
A + VR+L+ ++ F+ + +D E+ACLKA++ F + +GL D +++ L+ Q
Sbjct: 259 ----AEMSRVSVRILDELVLPFQELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQ 314
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
QV L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 315 VQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFGMAKIDNLLQEM 373
>gi|326937432|ref|NP_001192082.1| hepatocyte nuclear factor 4-alpha [Ovis aries]
gi|325305983|gb|ADZ11096.1| hepatocyte nuclear factor 4 alpha [Ovis aries]
Length = 455
Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 89/179 (49%), Gaps = 7/179 (3%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFN---ASEHVAAV 59
V+WAK +P+F LP DQV LL E LL A + S+ + L N H +
Sbjct: 190 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGNDYIVPRHCPEL 249
Query: 60 PNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
A + VR+L+ ++ F+ + +D E+ACLKA++ F + +GL D +++ L+ Q
Sbjct: 250 ----AEMSRVSVRILDELVLPFQELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQ 305
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
QV L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 306 VQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFGMAKIDNLLQEM 364
>gi|350421758|ref|XP_003492948.1| PREDICTED: transcription factor HNF-4 homolog [Bombus impatiens]
Length = 444
Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 86/179 (48%), Gaps = 3/179 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F+ L DQV LL E LL + S+ L + L N P G
Sbjct: 173 VEWAKYIPAFSELTLDDQVALLRAHAGEHLLLGVARRSMQLQDVLLLGNNCIITKNCPEG 232
Query: 63 KASQ---TAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
+ + +RV++ +++ V +D EFACLKA+V F +GL + +++ L+ Q
Sbjct: 233 RNQDLDISKVGIRVMDELVKPLNEVQIDDTEFACLKAIVFFDPNAKGLSEPQRIKQLRYQ 292
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
Q+ L ++ RFG +LL ++I ++ I F + ++ LL +M
Sbjct: 293 IQINLEDYISDRQYDSRGRFGEILLTLPALQSISWQMIEQIQFVRLFGVAHIDNLLQEM 351
>gi|291409662|ref|XP_002721104.1| PREDICTED: hepatocyte nuclear factor 4 alpha [Oryctolagus
cuniculus]
Length = 452
Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 75/145 (51%), Gaps = 1/145 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L N P
Sbjct: 199 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGNDYIIPRHCPE- 257
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + +R+L+ ++ F+ + +D E+ACLKA++ F + +GL D +++ L+ Q QV
Sbjct: 258 LAEMSRVSMRILDELVLPFQELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQV 317
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTS 147
L ++ RFG LLL+ S
Sbjct: 318 SLEDYINDRQYDSRGRFGELLLLLS 342
>gi|62752029|ref|NP_001015557.1| hepatocyte nuclear factor 4-alpha [Bos taurus]
gi|32454391|gb|AAP82997.1| hepatocyte nuclear factor 4alpha [Bos taurus]
gi|296481081|tpg|DAA23196.1| TPA: hepatocyte nuclear factor 4, alpha [Bos taurus]
Length = 455
Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 89/179 (49%), Gaps = 7/179 (3%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFN---ASEHVAAV 59
V+WAK +P+F LP DQV LL E LL A + S+ + L N H +
Sbjct: 190 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGNDYIVPRHCPEL 249
Query: 60 PNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
A + VR+L+ ++ F+ + +D E+ACLKA++ F + +GL D +++ L+ Q
Sbjct: 250 ----AEMSRVSVRILDELVLPFQELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQ 305
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
QV L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 306 VQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFGMAKIDNLLQEM 364
>gi|383864113|ref|XP_003707524.1| PREDICTED: transcription factor HNF-4 homolog [Megachile rotundata]
Length = 539
Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 86/179 (48%), Gaps = 3/179 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F+ L DQV LL E LL + S+ L + L N P G
Sbjct: 268 VEWAKYIPAFSELTLDDQVALLRAHAGEHLLLGVARRSMQLKDVLLLGNNCIITKNCPEG 327
Query: 63 KASQ---TAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
+ + +RV++ +++ V +D EFACLKA+V F +GL + +++ L+ Q
Sbjct: 328 RNQDLDISKVGIRVMDELVKPLNEVQIDDTEFACLKAIVFFDPNAKGLSEPQRIKQLRYQ 387
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
Q+ L ++ RFG +LL ++I ++ I F + ++ LL +M
Sbjct: 388 IQINLEDYISDRQYDSRGRFGEILLTLPALQSISWQMIEQIQFVRLFGVAHIDNLLQEM 446
>gi|121484125|gb|ABM54405.1| NR0B2 [Pan paniscus]
gi|124111348|gb|ABM92081.1| NR0B2 [Pan troglodytes]
Length = 186
Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 90/186 (48%), Gaps = 19/186 (10%)
Query: 8 NLPSFAALPFRDQVILLEESWSELFLLNAIQWSLP---------------LLESSPLFNA 52
NLPSF LP +DQ LL+ W LFLL Q ++ LLE ++
Sbjct: 1 NLPSFWQLPPQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVPSILKKILLEEP---SS 57
Query: 53 SEHVAAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQ 112
S +P+ + + A V+ L L+ F + + P E+ACLK +LF + GL+ +
Sbjct: 58 SGGSGQLPD-RPQPSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVPGLQAASH 116
Query: 113 VENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSME 172
+ +LQ +A L + + PA R R+LL S ++IP++ + +FF + + +
Sbjct: 117 IGHLQQEAHWALCEVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPIIGDVDIA 176
Query: 173 KLLCDM 178
LL DM
Sbjct: 177 GLLGDM 182
>gi|1150690|emb|CAA85763.1| hepatocyte nuclear factor 4 (HNF4) [Xenopus laevis]
Length = 455
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 89/176 (50%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L N P
Sbjct: 190 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMMFKDILLLGNDRLIPRNCPEL 249
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + A VR+L+ ++ F+ + +D E+ACLKA++ F + +GL D +++ ++ Q QV
Sbjct: 250 EVGRVA--VRILDELVLPFQELQIDDNEYACLKAIIFFDPDAKGLSDPTKIKRMRYQVQV 307
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 308 SLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMAKIDNLLQEM 363
>gi|340726819|ref|XP_003401750.1| PREDICTED: transcription factor HNF-4 homolog isoform 2 [Bombus
terrestris]
Length = 485
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 86/179 (48%), Gaps = 3/179 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F+ L DQV LL E LL + S+ L + L N P G
Sbjct: 214 VEWAKYIPAFSELTLDDQVALLRAHAGEHLLLGVARRSMQLQDVLLLGNNCIITKNCPEG 273
Query: 63 KASQ---TAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
+ + +RV++ +++ V +D EFACLKA+V F +GL + +++ L+ Q
Sbjct: 274 RNQDLDISKVGIRVMDELVKPLNEVQIDDTEFACLKAIVFFDPNAKGLSEPQRIKQLRYQ 333
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
Q+ L ++ RFG +LL ++I ++ I F + ++ LL +M
Sbjct: 334 IQINLEDYISDRQYDSRGRFGEILLTLPALQSISWQMIEQIQFVRLFGVAHIDNLLQEM 392
>gi|46048923|ref|NP_989924.1| nuclear receptor subfamily 0 group B member 1 [Gallus gallus]
gi|6625782|gb|AAF19395.1|AF202991_1 adrenal hyoplasia protein DAX1 [Gallus gallus]
Length = 263
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 95/187 (50%), Gaps = 12/187 (6%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPL--LESS---------PLFN 51
+++ +N+P F LP +Q++L+ W+ L +L Q + L +ES+
Sbjct: 73 LRFVQNVPCFQELPLDEQLVLVRSCWAPLLVLGLAQERVHLETVESAEPSMLQRILTTRR 132
Query: 52 ASEHVAAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSL 111
EH A P + +A +++ + G L + + + E+A LK VLF + GL+ +
Sbjct: 133 LGEHAPA-PGRQHPPSAGEIQAIKGFLAKCWSLDISTKEYAYLKGTVLFNPDLPGLQCTQ 191
Query: 112 QVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSM 171
+E LQ +AQ L +HVR H ARF +L ++ S R+I + + +FF + + +M
Sbjct: 192 YIEGLQKEAQEALNEHVRLIHRGDQARFAKLNVVLSLLRSINANVIAELFFRPIIGSVNM 251
Query: 172 EKLLCDM 178
+ +L +M
Sbjct: 252 DDMLLEM 258
>gi|348563849|ref|XP_003467719.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 2 [Cavia
porcellus]
Length = 464
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 89/179 (49%), Gaps = 7/179 (3%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFN---ASEHVAAV 59
V+WAK +P+F LP DQV LL E LL A + S+ + L N H +
Sbjct: 199 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGNDYIVPRHCPEL 258
Query: 60 PNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
A + VR+L+ ++ F+ + +D E+ACLKA++ F + +GL D +++ L+ Q
Sbjct: 259 ----AEMSRVSVRILDELVLPFQELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQ 314
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
QV L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 315 VQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFGMAKIDNLLQEM 373
>gi|432095516|gb|ELK26668.1| Usher syndrome type-1C protein-binding protein 1 [Myotis davidii]
Length = 768
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 63/98 (64%), Gaps = 1/98 (1%)
Query: 81 FRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFG 140
FR VG+ E+ CLKA+ LF + GL D VE+LQ++AQV L ++VR +P+QP RFG
Sbjct: 657 FR-VGMRKEEYGCLKAIALFTPDACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFG 715
Query: 141 RLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
RLLL R +P++ + +FF + V T +E L+ DM
Sbjct: 716 RLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDM 753
>gi|112984316|ref|NP_001037474.1| hepatocyte nuclear factor 4 isoform a [Bombyx mori]
gi|2734850|gb|AAB93762.1| hepatocyte nuclear factor 4 isoform a [Bombyx mori]
Length = 436
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 86/178 (48%), Gaps = 2/178 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F L DQV LL E LL + SL L + L N +G
Sbjct: 200 VEWAKYIPAFTVLHLDDQVALLRAHAGEHLLLGCARRSLHLKDILLLGNNCIITKHNIDG 259
Query: 63 KASQTAA--DVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+ + +RV++ +++ R + +D EFACLKA+V F +GL +++ L+ Q
Sbjct: 260 RMDIDISMIGMRVMDEIVKPLREIDIDDTEFACLKAIVFFDPNAKGLSQPQKIKQLRYQI 319
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
Q+ L ++ RFG LLL ++I ++ I FAK ++ LL +M
Sbjct: 320 QINLEDYISDRQYDGRGRFGELLLCLPPLQSITWQMIEQIQFAKLFGVAHVDSLLQEM 377
>gi|147902641|ref|NP_001080070.1| hepatocyte nuclear factor 4-alpha [Xenopus laevis]
gi|27503338|gb|AAH42224.1| Hnf4 protein [Xenopus laevis]
Length = 464
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 89/176 (50%), Gaps = 2/176 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L N P
Sbjct: 199 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMMFKDILLLGNDRLIPRNCPEL 258
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + A VR+L+ ++ F+ + +D E+ACLKA++ F + +GL D +++ ++ Q QV
Sbjct: 259 EVGRVA--VRILDELVLPFQELQIDDNEYACLKAIIFFDPDAKGLSDPTKIKRMRYQVQV 316
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 317 SLEDYINDRQYDSRGRFGDLLLLLPTLQSITWQMIEQIQFVKLFGMAKIDNLLQEM 372
>gi|410953686|ref|XP_003983501.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 2 [Felis
catus]
Length = 464
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 89/179 (49%), Gaps = 7/179 (3%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFN---ASEHVAAV 59
V+WAK +P+F LP DQV LL E LL A + S+ + L N H +
Sbjct: 199 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGNDYIVPRHCPEL 258
Query: 60 PNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
A + VR+L+ ++ F+ + +D E+ACLKA++ F + +GL D +++ L+ Q
Sbjct: 259 ----AEMSRVSVRILDELVLPFQELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQ 314
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
QV L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 315 VQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFGMAKIDNLLQEM 373
>gi|113205738|ref|NP_001038036.1| hepatocyte nuclear factor 4-alpha [Sus scrofa]
gi|70672404|gb|AAZ06405.1| hepatic nuclear factor 4 [Sus scrofa]
Length = 474
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 87/176 (49%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P+F LP DQV LL E LL A + S+ + L N P
Sbjct: 199 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGNDYIIPRHCPE- 257
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A VR+L+ ++ F+ + VD E+ACLKA++ F + +GL D +++ L+ Q QV
Sbjct: 258 LAEMNRVSVRILDELVLPFQELQVDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQV 317
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 318 SLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFGMAKIDNLLQEM 373
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.132 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,606,819,592
Number of Sequences: 23463169
Number of extensions: 91169311
Number of successful extensions: 205910
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3755
Number of HSP's successfully gapped in prelim test: 1776
Number of HSP's that attempted gapping in prelim test: 197512
Number of HSP's gapped (non-prelim): 6064
length of query: 181
length of database: 8,064,228,071
effective HSP length: 133
effective length of query: 48
effective length of database: 9,238,593,890
effective search space: 443452506720
effective search space used: 443452506720
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 72 (32.3 bits)