BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17882
(181 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Y5X4|NR2E3_HUMAN Photoreceptor-specific nuclear receptor OS=Homo sapiens GN=NR2E3
PE=1 SV=1
Length = 410
Score = 224 bits (571), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 113/182 (62%), Positives = 137/182 (75%), Gaps = 2/182 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAV- 59
MAVKWAKNLP F++LPFRDQVILLEE+WSELFLL AIQWSLPL +S PL E AA
Sbjct: 230 MAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPL-DSCPLLAPPEASAAGG 288
Query: 60 PNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
G+ + + + RVL + RFR + VDP EFAC+KA+VLFK ETRGLKD VE LQDQ
Sbjct: 289 AQGRLTLASMETRVLQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQ 348
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
+QVML+QH + HHP+QP RFG+LLL+ R I + R++ +FF KT+ NT MEKLLCDM+
Sbjct: 349 SQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLCDMF 408
Query: 180 KN 181
KN
Sbjct: 409 KN 410
>sp|Q9QXZ7|NR2E3_MOUSE Photoreceptor-specific nuclear receptor OS=Mus musculus GN=Nr2e3
PE=1 SV=1
Length = 395
Score = 218 bits (554), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 110/181 (60%), Positives = 135/181 (74%), Gaps = 2/181 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAVKWAKNLP F+ LPFRDQVILLEE+W+ELFLL AIQWSLPL +S PL A +
Sbjct: 217 MAVKWAKNLPVFSNLPFRDQVILLEEAWNELFLLGAIQWSLPL-DSCPLL-APPEASGSS 274
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
G+ + +A+ R L + RFR + VDP EFACLKA+VLFK ETRGLKD VE LQDQ+
Sbjct: 275 QGRLALASAETRFLQETISRFRALAVDPTEFACLKALVLFKPETRGLKDPEHVEALQDQS 334
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
QVML+QH + HHP+QP RFG+LLL+ R + + R++ +FF KT+ NT MEKLLCDM+K
Sbjct: 335 QVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFLTAERIELLFFRKTIGNTPMEKLLCDMFK 394
Query: 181 N 181
N
Sbjct: 395 N 395
>sp|Q9TTF0|NR2E3_BOVIN Photoreceptor-specific nuclear receptor OS=Bos taurus GN=NR2E3 PE=1
SV=2
Length = 411
Score = 217 bits (553), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 112/182 (61%), Positives = 135/182 (74%), Gaps = 2/182 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
MAVKWAKNLP F+ LPFRDQVILLEE+WSELFLL AIQWSLPL ++ PL E A
Sbjct: 231 MAVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLGAIQWSLPL-DNCPLLALPEASAGGS 289
Query: 61 N-GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
+ G+ +A+ R+L + RFR + VDP EFAC+KA+VLFK ETRGLKD VE LQDQ
Sbjct: 290 SQGRLVLASAETRILQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQ 349
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
+QVML+QH + HHP+Q RFG+LLL+ R I S RV+ +FF KT+ NT MEKLLCDM+
Sbjct: 350 SQVMLSQHSKAHHPSQLVRFGKLLLLLPSLRFISSERVELLFFRKTIGNTPMEKLLCDMF 409
Query: 180 KN 181
KN
Sbjct: 410 KN 411
>sp|Q64104|NR2E1_MOUSE Nuclear receptor subfamily 2 group E member 1 OS=Mus musculus
GN=Nr2e1 PE=1 SV=1
Length = 385
Score = 144 bits (363), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 120/188 (63%), Gaps = 7/188 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M++KWAK++P+F+ L +DQ++LLE++W ELF+L QW++P+ ++ L + +
Sbjct: 195 MSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNTDNTD 254
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK-------SETRGLKDSLQV 113
+ K ++ ++++ L V+ RFR + +D EFACLK +V FK SE R +++ +
Sbjct: 255 SQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAI 314
Query: 114 ENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEK 173
LQD+AQ+ L ++ T +P QP RFG+LLL+ R+I + ++ +FF KT+ N + +
Sbjct: 315 AALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITR 374
Query: 174 LLCDMYKN 181
LL DMYK+
Sbjct: 375 LLSDMYKS 382
>sp|P70052|NR2E1_XENLA Nuclear receptor subfamily 2 group E member 1 OS=Xenopus laevis
GN=nr2e1 PE=2 SV=1
Length = 386
Score = 144 bits (362), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 120/189 (63%), Gaps = 8/189 (4%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M++KWAK++P+F+ L +DQ++LLE++W ELF+L QW++P+ S+ L + +
Sbjct: 195 MSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDASTLLAVSGMNNENTE 254
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK--------SETRGLKDSLQ 112
+ K ++ ++++ L V+ RFR + +D EFACLK +V FK SE R +++
Sbjct: 255 SPKLNKIISEIQALQDVVSRFRQLRLDATEFACLKCIVTFKAGVSTHSGSELRNFRNAAA 314
Query: 113 VENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSME 172
+ LQD+AQ+ L ++ T +P QP RFG+LLL+ R+I + ++ +FF KT+ N +
Sbjct: 315 ISALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSINPSTIEEVFFKKTIGNVPIT 374
Query: 173 KLLCDMYKN 181
++L DMYK+
Sbjct: 375 RVLSDMYKS 383
>sp|Q9YGL3|NR2E1_ORYLA Nuclear receptor subfamily 2 group E member 1 OS=Oryzias latipes
GN=nr2e1 PE=2 SV=1
Length = 396
Score = 144 bits (362), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 119/188 (63%), Gaps = 7/188 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M++KWAK++P+F+ LP DQ+ILLE++W ELF+L QW++P+ ++ L + + +
Sbjct: 206 MSIKWAKSVPAFSTLPLSDQLILLEDAWRELFVLGIAQWAIPVDSTTLLAVSGLNSENME 265
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKS-------ETRGLKDSLQV 113
+ ++ A+++ L V+ RFR + +D EFACLK +V FK+ E R +++ +
Sbjct: 266 AQRMNKIMAEIQALQEVVTRFRQMRLDATEFACLKCIVTFKAVPTQGSAELRAFRNASAI 325
Query: 114 ENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEK 173
LQD+AQ+ L ++ T +P QP RFG+LLL+ R++ + ++ +FF K + N + +
Sbjct: 326 AALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSVSPSTIEEVFFKKNIGNVPITR 385
Query: 174 LLCDMYKN 181
LL DMYK+
Sbjct: 386 LLSDMYKS 393
>sp|Q9Y466|NR2E1_HUMAN Nuclear receptor subfamily 2 group E member 1 OS=Homo sapiens
GN=NR2E1 PE=2 SV=1
Length = 385
Score = 143 bits (360), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 120/188 (63%), Gaps = 7/188 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M++KWAK++P+F+ L +DQ++LLE++W ELF+L QW++P+ ++ L + +
Sbjct: 195 MSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTD 254
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK-------SETRGLKDSLQV 113
+ K ++ ++++ L V+ RFR + +D EFACLK +V FK SE R +++ +
Sbjct: 255 SQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAI 314
Query: 114 ENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEK 173
LQD+AQ+ L ++ T +P QP RFG+LLL+ R+I + ++ +FF KT+ N + +
Sbjct: 315 AALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITR 374
Query: 174 LLCDMYKN 181
LL DMYK+
Sbjct: 375 LLSDMYKS 382
>sp|Q91379|NR2E1_CHICK Nuclear receptor subfamily 2 group E member 1 OS=Gallus gallus
GN=NR2E1 PE=2 SV=1
Length = 385
Score = 143 bits (360), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 120/188 (63%), Gaps = 7/188 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
M++KWAK++P+F+ L +DQ++LLE++W ELF+L QW++P+ ++ L + +
Sbjct: 195 MSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTD 254
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK-------SETRGLKDSLQV 113
+ K ++ ++++ L V+ RFR + +D EFACLK +V FK SE R +++ +
Sbjct: 255 SQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAI 314
Query: 114 ENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEK 173
LQD+AQ+ L ++ T +P QP RFG+LLL+ R+I + ++ +FF KT+ N + +
Sbjct: 315 AALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITR 374
Query: 174 LLCDMYKN 181
LL DMYK+
Sbjct: 375 LLSDMYKS 382
>sp|P43135|COT2_MOUSE COUP transcription factor 2 OS=Mus musculus GN=Nr2f2 PE=1 SV=2
Length = 414
Score = 141 bits (355), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 223 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 282
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++Q
Sbjct: 283 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQ 342
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 343 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 399
>sp|P24468|COT2_HUMAN COUP transcription factor 2 OS=Homo sapiens GN=NR2F2 PE=1 SV=1
Length = 414
Score = 141 bits (355), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 223 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 282
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++Q
Sbjct: 283 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQ 342
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 343 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 399
>sp|Q9TTR8|COT1_BOVIN COUP transcription factor 1 OS=Bos taurus GN=NR2F1 PE=2 SV=1
Length = 424
Score = 141 bits (355), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 111/177 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 231 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 290
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D+ +E+LQ+++Q
Sbjct: 291 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQ 350
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 351 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 407
>sp|Q9TTR7|COT2_BOVIN COUP transcription factor 2 OS=Bos taurus GN=NR2F2 PE=2 SV=1
Length = 414
Score = 141 bits (355), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 223 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 282
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++Q
Sbjct: 283 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQ 342
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 343 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 399
>sp|Q90733|COT2_CHICK COUP transcription factor 2 OS=Gallus gallus GN=NR2F2 PE=2 SV=1
Length = 410
Score = 141 bits (355), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 219 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 278
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++Q
Sbjct: 279 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQ 338
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 339 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 395
>sp|P10589|COT1_HUMAN COUP transcription factor 1 OS=Homo sapiens GN=NR2F1 PE=1 SV=1
Length = 423
Score = 140 bits (354), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 111/177 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 230 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 289
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D+ +E+LQ+++Q
Sbjct: 290 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQ 349
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 350 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 406
>sp|Q60632|COT1_MOUSE COUP transcription factor 1 OS=Mus musculus GN=Nr2f1 PE=2 SV=2
Length = 422
Score = 140 bits (354), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 111/177 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 229 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 288
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D+ +E+LQ+++Q
Sbjct: 289 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQ 348
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 349 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 405
>sp|O09018|COT2_RAT COUP transcription factor 2 OS=Rattus norvegicus GN=Nr2f2 PE=1 SV=1
Length = 414
Score = 140 bits (354), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 109/177 (61%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 223 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 282
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++Q
Sbjct: 283 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQ 342
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 343 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 399
>sp|Q06725|N2F1A_DANRE Nuclear receptor subfamily 2 group F member 1-A OS=Danio rerio
GN=nr2f1a PE=2 SV=1
Length = 411
Score = 140 bits (352), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 111/177 (62%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 220 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 279
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++C+KA+VLF S+ GL D+ +E+LQ+++Q
Sbjct: 280 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCIKAIVLFTSDACGLSDAAHIESLQEKSQ 339
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP+RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 340 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 396
>sp|P16375|7UP1_DROME Steroid receptor seven-up, isoforms B/C OS=Drosophila melanogaster
GN=svp PE=2 SV=1
Length = 543
Score = 137 bits (345), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 106/177 (59%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WAKN+P F L DQV LL WSELF+LNA Q S+PL + L A H + +
Sbjct: 352 AVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAA 411
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R+ +++ + + VD AE++CLKA+VLF ++ GL D +E+LQ+++Q
Sbjct: 412 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVTHIESLQEKSQ 471
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++ RT +P QP RFG+LLL R + S ++ +FF + V T +E L+ DM
Sbjct: 472 CALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDM 528
>sp|Q6PH18|N2F1B_DANRE Nuclear receptor subfamily 2 group F member 1-B OS=Danio rerio
GN=nr2f1b PE=2 SV=1
Length = 389
Score = 134 bits (336), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 106/177 (59%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 198 AVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQSSMPLHVAPLLAAAGLHASPMSA 257
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +R +++ + + VD AE++C KA+VLF S+ GL D +E LQ+++Q
Sbjct: 258 DRVVAFMDHIRFFQEQVEKLKALQVDSAEYSCAKAIVLFTSDACGLSDIPHIEGLQEKSQ 317
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 318 CALEEYVRSQYPNQPTRFGKLLLRLPALRMVSSSVIEQLFFVRLVGKTPIETLIRDM 374
>sp|Q06726|NR2F5_DANRE Nuclear receptor subfamily 2 group F member 5 OS=Danio rerio
GN=nr2f5 PE=2 SV=1
Length = 403
Score = 130 bits (327), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 107/177 (60%)
Query: 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPN 61
AV+WAKN+P F L DQV LL SWSELF+LNA Q S+PL + L A H + +
Sbjct: 198 AVEWAKNIPFFPDLQLMDQVALLRMSWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSA 257
Query: 62 GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQ 121
+ +RV +++ + + VD AE++CLK++VLF S+ GL D VE++Q+++Q
Sbjct: 258 ERVVAFMDHIRVFQEQVEKLKALQVDTAEYSCLKSIVLFTSDAMGLSDVAHVESIQEKSQ 317
Query: 122 VMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR +P QP RFGRLLL R + S ++ +FF + V T +E LL DM
Sbjct: 318 CALEEYVRNQYPNQPNRFGRLLLRLPSLRIVSSPVIEQLFFVRLVGKTPIETLLRDM 374
>sp|O09017|NR2F6_RAT Nuclear receptor subfamily 2 group F member 6 OS=Rattus norvegicus
GN=Nr2f6 PE=2 SV=1
Length = 390
Score = 127 bits (318), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 102/176 (57%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WA++ P F LP DQV LL SWSELF+LNA Q +PL + L A H +
Sbjct: 201 VEWARHAPFFPELPAADQVGLLRLSWSELFVLNAAQAPVPLHTAPLLAAAGLHAGPMAAE 260
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A VR + + + VD AE+ CLKA+ LF + GL D VE+LQ++AQV
Sbjct: 261 RAVAFMDQVRAFQEQVDKLGRLQVDAAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQV 320
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR +P+QP RFGRLLL R +P++ + +FF + V T +E L+ DM
Sbjct: 321 ALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDM 376
>sp|P10588|NR2F6_HUMAN Nuclear receptor subfamily 2 group F member 6 OS=Homo sapiens
GN=NR2F6 PE=1 SV=2
Length = 404
Score = 123 bits (309), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 104/176 (59%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WA++ P F LP DQV LL SWSELF+LNA Q +LPL + L A H A +
Sbjct: 214 VEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAE 273
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A VR + + + VD AE+ CLKA+ LF + GL D VE+LQ++AQV
Sbjct: 274 RAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQV 333
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR +P+QP RFGRLLL R +P++ + +FF + V T +E L+ DM
Sbjct: 334 ALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDM 389
>sp|P43136|NR2F6_MOUSE Nuclear receptor subfamily 2 group F member 6 OS=Mus musculus
GN=Nr2f6 PE=1 SV=2
Length = 390
Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 104/176 (59%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WA++ P F LP DQV LL SWSELF+LNA Q +LPL + L A H A +
Sbjct: 201 VEWARHAPFFPELPAADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAE 260
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A VR + + + VD AE+ CLKA+ LF + GL D VE+LQ++AQV
Sbjct: 261 RAVAFMDQVRAFQEQVDKLGRLQVDAAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQV 320
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L ++VR +P+QP RFGRLLL R +P++ + +FF + V T +E L+ DM
Sbjct: 321 ALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDM 376
>sp|Q6DHP9|RXRGB_DANRE Retinoic acid receptor RXR-gamma-B OS=Danio rerio GN=rxrgb PE=2
SV=1
Length = 452
Score = 109 bits (272), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 96/176 (54%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 270 VEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSI-TVKDGILLGTGLHVHRSSAH 328
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D E CL+A+VLF + +GL +SL+VE L+++
Sbjct: 329 SAGVGSIFNRVLTELVSKMKDMQMDKTELGCLRAIVLFNPDAKGLSNSLEVEALREKVYA 388
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 389 SLETYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 444
>sp|P51128|RXRA_XENLA Retinoic acid receptor RXR-alpha OS=Xenopus laevis GN=rxra PE=1
SV=1
Length = 488
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 96/176 (54%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 306 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 364
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + L+VE L+++
Sbjct: 365 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPLEVEALREKVYA 424
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 425 SLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 480
>sp|Q5I7G2|RXR_LYMST Retinoic acid receptor RXR OS=Lymnaea stagnalis GN=RXR PE=1 SV=1
Length = 436
Score = 107 bits (266), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 94/179 (52%), Gaps = 1/179 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F LP DQVILL W+EL + S+ + + L HV
Sbjct: 254 VEWAKRIPHFTELPLEDQVILLRAGWNELLIAGFSHRSI-MAKDGILLATGLHVHRSSAH 312
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A RVL ++ + R + +D E CL+AVVLF + +GL +VE L+++
Sbjct: 313 QAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAVVLFNPDAKGLTAVQEVEQLREKVYA 372
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYKN 181
L ++ +T +P +P RF +LLL R+I ++H+FF K + + ++ L +M +N
Sbjct: 373 SLEEYTKTRYPEEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDQPIDTFLMEMLEN 431
>sp|P51129|RXRG_XENLA Retinoic acid receptor RXR-gamma OS=Xenopus laevis GN=rxrg PE=2
SV=1
Length = 470
Score = 106 bits (264), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 96/176 (54%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L HV
Sbjct: 288 VEWAKRIPYFSDLPLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 346
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL ++ +VE L+++
Sbjct: 347 NAGVGSIFDRVLTELVSKMKDMDMDKSELGCLRAIVLFNPDAKGLSNAAEVEALREKVYA 406
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 407 TLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 462
>sp|P19793|RXRA_HUMAN Retinoic acid receptor RXR-alpha OS=Homo sapiens GN=RXRA PE=1 SV=1
Length = 462
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 280 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 338
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 339 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 398
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 399 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 454
>sp|P28700|RXRA_MOUSE Retinoic acid receptor RXR-alpha OS=Mus musculus GN=Rxra PE=1 SV=1
Length = 467
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 285 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 343
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 344 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 403
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 404 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 459
>sp|Q05343|RXRA_RAT Retinoic acid receptor RXR-alpha OS=Rattus norvegicus GN=Rxra PE=2
SV=1
Length = 467
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 285 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 343
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 344 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 403
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 404 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 459
>sp|A2T929|RXRAA_DANRE Retinoic acid receptor RXR-alpha-A OS=Danio rerio GN=rxraa PE=2
SV=2
Length = 430
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 248 VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-AVKDGILLATGLHVHRNSAH 306
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 307 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYA 366
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 367 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 422
>sp|Q8T5C6|RXR_BIOGL Retinoic acid receptor RXR OS=Biomphalaria glabrata GN=RXR PE=1
SV=1
Length = 436
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 94/179 (52%), Gaps = 1/179 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F LP DQVILL W+EL + S+ + + L HV
Sbjct: 254 VEWAKRIPHFTELPLEDQVILLRAGWNELLIAGFSHRSI-MAKDGILLATGLHVHRSSAH 312
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A RVL ++ + R + +D E CL+AVVLF + +GL +VE L+++
Sbjct: 313 QAGVGTIFDRVLTELVAKMRDMKMDKTELGCLRAVVLFNPDAKGLTAVQEVEQLREKVYA 372
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYKN 181
L ++ ++ +P +P RF +LLL R+I ++H+FF K + + ++ L +M +N
Sbjct: 373 SLEEYTKSRYPEEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDQPIDTFLMEMLEN 431
>sp|Q90415|RXRAB_DANRE Retinoic acid receptor RXR-alpha-B OS=Danio rerio GN=rxrab PE=2
SV=1
Length = 379
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L HV
Sbjct: 197 VEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSIAV-KDGILLATGLHVHRNSAH 255
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 256 TAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPSEVEALRERVYA 315
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 316 SLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 371
>sp|Q90416|RXRGA_DANRE Retinoic acid receptor RXR-gamma-A OS=Danio rerio GN=rxrga PE=2
SV=2
Length = 441
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ LP DQVILL W+EL + + S+ ++ L HV
Sbjct: 259 VEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSV-TVKDGILLATGLHVHRSSAH 317
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + R + +D E CL+A+VLF + +GL + +VE L+++
Sbjct: 318 SAGVGSIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDAKGLSNPSEVEALREKVYA 377
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + ++P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 378 SLEGYTKHNYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 433
>sp|Q0GFF6|RXRG_PIG Retinoic acid receptor RXR-gamma OS=Sus scrofa GN=RXRG PE=2 SV=2
Length = 463
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 281 VEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 339
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL + +VE L+++
Sbjct: 340 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYA 399
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 400 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
>sp|Q5REL6|RXRG_PONAB Retinoic acid receptor RXR-gamma OS=Pongo abelii GN=RXRG PE=2 SV=1
Length = 463
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 281 VEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 339
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL + +VE L+++
Sbjct: 340 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYA 399
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 400 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
>sp|P48443|RXRG_HUMAN Retinoic acid receptor RXR-gamma OS=Homo sapiens GN=RXRG PE=1 SV=1
Length = 463
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 281 VEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 339
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL + +VE L+++
Sbjct: 340 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYA 399
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 400 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
>sp|P28705|RXRG_MOUSE Retinoic acid receptor RXR-gamma OS=Mus musculus GN=Rxrg PE=2 SV=2
Length = 463
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 281 VEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 339
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL + +VE L+++
Sbjct: 340 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYA 399
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 400 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDSFLMEM 455
>sp|Q0VC20|RXRG_BOVIN Retinoic acid receptor RXR-gamma OS=Bos taurus GN=RXRG PE=2 SV=1
Length = 463
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 281 VEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 339
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL + +VE L+++
Sbjct: 340 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYA 399
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 400 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
>sp|Q5BJR8|RXRG_RAT Retinoic acid receptor RXR-gamma OS=Rattus norvegicus GN=Rxrg PE=2
SV=1
Length = 463
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 281 VEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 339
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL + +VE L+++
Sbjct: 340 SAGVGSIFDRVLTELVSKMKDMRMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYA 399
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 400 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
>sp|P49743|RXRB_RAT Retinoic acid receptor RXR-beta (Fragment) OS=Rattus norvegicus
GN=Rxrb PE=2 SV=1
Length = 458
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + + L HV
Sbjct: 276 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI-LLATGLHVHRNSAH 334
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 335 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGEVEILREKVYA 394
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 395 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 450
>sp|P28701|RXRG_CHICK Retinoic acid receptor RXR-gamma OS=Gallus gallus GN=RXRG PE=2 SV=1
Length = 467
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F+ L DQVILL W+EL + + S+ + + L HV
Sbjct: 285 VEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSV-QDGILLATGLHVHRSSAH 343
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + RVL ++ + + + +D +E CL+A+VLF + +GL +VE+L+++
Sbjct: 344 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSSPSEVESLREKVYA 403
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 404 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 459
>sp|P28704|RXRB_MOUSE Retinoic acid receptor RXR-beta OS=Mus musculus GN=Rxrb PE=2 SV=2
Length = 520
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + + L HV
Sbjct: 338 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI-LLATGLHVHRNSAH 396
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 397 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGEVEILREKVYA 456
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 457 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 512
>sp|P28702|RXRB_HUMAN Retinoic acid receptor RXR-beta OS=Homo sapiens GN=RXRB PE=1 SV=2
Length = 533
Score = 100 bits (250), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + + L HV
Sbjct: 351 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI-LLATGLHVHRNSAH 409
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 410 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYA 469
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 470 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 525
>sp|Q5TJF7|RXRB_CANFA Retinoic acid receptor RXR-beta OS=Canis familiaris GN=RXRB PE=3
SV=1
Length = 533
Score = 100 bits (250), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+WAK +P F++LP DQVILL W+EL + + S+ + + L HV
Sbjct: 351 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI-LLATGLHVHRNSAH 409
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A A RVL ++ + R + +D E CL+A++LF + +GL + +VE L+++
Sbjct: 410 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYA 469
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + + +P Q RF +LLL R+I ++H+FF K + +T ++ L +M
Sbjct: 470 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 525
>sp|O16845|TLL_DROVI Protein tailless OS=Drosophila virilis GN=tll PE=3 SV=1
Length = 450
Score = 96.7 bits (239), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 100/211 (47%), Gaps = 41/211 (19%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLF-----NASEHVA 57
V W K++ +F LP DQ++LLEESW E F+L Q+ +P+ + LF NA+ +
Sbjct: 242 VNWIKSVRAFTELPMPDQLLLLEESWKEFFILAMAQYLMPMNFAQLLFVYESENANREIV 301
Query: 58 AVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK---------------- 101
+ A +V V R + +D E+ CL+A+ LF+
Sbjct: 302 TI-------VAREVHAFQAVPNRLCHLNIDSTEYECLRAISLFRKSPPAASSTEDLANSS 354
Query: 102 -------------SETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQ 148
+E+RGL +S +V + + A+ L ++ HP QP RF LL + +
Sbjct: 355 ILTGSGSPNSSASAESRGLLESSKVAAMHNDARNALHNYISRTHPNQPLRFQTLLGVVTL 414
Query: 149 CRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
+ S ++ +FF KT+ + ++ +L+ DMY
Sbjct: 415 MHKVSSFTIEELFFRKTIGDITIVRLISDMY 445
>sp|Q90417|RXRBB_DANRE Retinoic acid receptor RXR-beta-B OS=Danio rerio GN=rxrbb PE=2 SV=1
Length = 422
Score = 96.3 bits (238), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 97/189 (51%), Gaps = 13/189 (6%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WAK +P F+ +P DQVILL W+EL + S+ + + L S H
Sbjct: 229 VEWAKRVPHFSDVPLDDQVILLRAGWNELLIAAFSHRSISVKDEILLATGLHVPKESTHN 288
Query: 57 AAVPN--GKASQTAADV-----RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKD 109
V + S +A+V RVL ++ + R + +D E CL+A+VLF + +GL
Sbjct: 289 LGVEAFFDRESSHSAEVGALFDRVLTELVCKMRDMQMDKTELGCLRAIVLFNPDAKGLTS 348
Query: 110 SLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANT 169
S +VE L+++ L + + +P Q RF +LLL R+I ++H+FF K + NT
Sbjct: 349 SSEVELLREKVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGNT 408
Query: 170 SMEKLLCDM 178
++ L +M
Sbjct: 409 PIDTFLMEM 417
>sp|P18102|TLL_DROME Protein tailless OS=Drosophila melanogaster GN=tll PE=2 SV=1
Length = 452
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 101/211 (47%), Gaps = 41/211 (19%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLF-----NASEHVA 57
V W K++ +F LP DQ++LLEESW E F+L Q+ +P+ + LF NA+ +
Sbjct: 244 VNWIKSVRAFTELPMPDQLLLLEESWKEFFILAMAQYLMPMNFAQLLFVYESENANREIM 303
Query: 58 AVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFK---------------- 101
+ +V VL + + +D E+ CL+A+ LF+
Sbjct: 304 GM-------VTREVHAFQEVLNQLCHLNIDSTEYECLRAISLFRKSPPSASSTEDLANSS 356
Query: 102 -------------SETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQ 148
+E+RGL +S +V + + A+ L +++ HP+QP RF LL +
Sbjct: 357 ILTGSGSPNSSASAESRGLLESGKVAAMHNDARSALHNYIQRTHPSQPMRFQTLLGVVQL 416
Query: 149 CRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
+ S ++ +FF KT+ + ++ +L+ DMY
Sbjct: 417 MHKVSSFTIEELFFRKTIGDITIVRLISDMY 447
>sp|Q7SYN5|RXRBA_DANRE Retinoic acid receptor RXR-beta-A OS=Danio rerio GN=rxrba PE=2 SV=1
Length = 471
Score = 93.6 bits (231), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 96/189 (50%), Gaps = 13/189 (6%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SEHV 56
V+WAK +P F+ L DQVILL W+EL + + S+ + + L S H
Sbjct: 275 VEWAKRIPHFSELSLDDQVILLRAGWNELLIASFSHRSITVKDGILLATGLHVHRNSAHS 334
Query: 57 AAVPN--GKASQTAADV-----RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKD 109
A V + S A+V RVL ++ + R + +D E CL+A++LF + +GL
Sbjct: 335 AGVGAIFDRESAHNAEVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIILFNPDAKGLSS 394
Query: 110 SLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANT 169
+VE L+++ L + + +P Q RF +LLL R+I ++H+FF K + +T
Sbjct: 395 PSEVELLREKVYASLEAYCKQRYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDT 454
Query: 170 SMEKLLCDM 178
++ L +M
Sbjct: 455 PIDTFLMEM 463
>sp|Q62227|NR0B2_MOUSE Nuclear receptor subfamily 0 group B member 2 OS=Mus musculus
GN=Nr0b2 PE=1 SV=1
Length = 260
Score = 91.7 bits (226), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 92/187 (49%), Gaps = 11/187 (5%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSL----------PLLESSPLFNA 52
V + +NLPSF LP DQ LLE W LFLL Q ++ +L+ L A
Sbjct: 70 VAFLRNLPSFCHLPHEDQRRLLECCWGPLFLLGLAQDAVTFEVAEAPVPSILKKILLEEA 129
Query: 53 SEHV-AAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSL 111
S A P+ + + A V+ L L+ F + + P E+A LK +LF + GL+ S
Sbjct: 130 SSGTQGAQPSDRPQPSLAAVQWLQRCLESFWSLELGPKEYAYLKGTILFNPDVPGLRASC 189
Query: 112 QVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSM 171
+ +LQ +A L + + +PA R R+LLM S +NIP + +FF + + +
Sbjct: 190 HIAHLQQEAHWALCEVLEPWYPASQGRLARILLMASTLKNIPGTLLVDLFFRPIMGDVDI 249
Query: 172 EKLLCDM 178
+LL DM
Sbjct: 250 TELLEDM 256
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.132 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,968,428
Number of Sequences: 539616
Number of extensions: 2119478
Number of successful extensions: 5543
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 4921
Number of HSP's gapped (non-prelim): 408
length of query: 181
length of database: 191,569,459
effective HSP length: 110
effective length of query: 71
effective length of database: 132,211,699
effective search space: 9387030629
effective search space used: 9387030629
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)