Query psy17882
Match_columns 181
No_of_seqs 121 out of 1101
Neff 10.0
Searched_HMMs 29240
Date Fri Aug 16 16:34:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17882.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17882hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2iz2_A FTZ-F1 alpha, nuclear h 100.0 1.1E-43 3.7E-48 262.8 14.9 180 2-181 62-241 (243)
2 1fcy_A RAR-gamma-1, retinoic a 100.0 5.3E-44 1.8E-48 263.6 11.1 177 2-180 60-236 (236)
3 3ltx_A Estrogen receptor; cons 100.0 7E-44 2.4E-48 263.9 11.3 178 2-180 52-229 (243)
4 2e2r_A Estrogen-related recept 100.0 1.8E-43 6.3E-48 261.8 11.9 178 2-181 64-241 (244)
5 3k6p_A Steroid hormone recepto 100.0 1.9E-43 6.5E-48 262.2 11.9 177 2-180 64-244 (248)
6 3plz_A FTZ-F1 related protein; 100.0 2E-43 6.7E-48 263.3 11.7 180 2-181 72-254 (257)
7 3kmr_A Retinoic acid receptor 100.0 3.6E-43 1.2E-47 262.9 10.6 178 2-181 84-261 (266)
8 2nxx_A Ultraspiracle (USP, NR2 100.0 1.3E-42 4.5E-47 256.0 13.0 178 2-181 53-231 (235)
9 3p0u_A Nuclear receptor subfam 100.0 4E-42 1.4E-46 255.2 15.4 179 2-181 50-235 (249)
10 1g2n_A Ultraspiracle protein; 100.0 1.4E-42 4.8E-47 259.8 12.5 180 2-181 58-254 (264)
11 3v3e_B Nuclear receptor subfam 100.0 5.5E-43 1.9E-47 260.5 9.7 175 2-180 68-244 (257)
12 3vi8_A Peroxisome proliferator 100.0 2.7E-42 9.3E-47 258.7 13.1 178 2-181 92-271 (273)
13 1ymt_A Steroidogenic factor 1; 100.0 1.6E-42 5.3E-47 257.2 11.4 180 2-181 61-243 (246)
14 3ilz_A Thyroid hormone recepto 100.0 1.7E-42 5.7E-47 259.6 11.1 178 2-181 86-264 (267)
15 3f5c_B Nuclear receptor subfam 100.0 5.8E-42 2E-46 256.3 13.4 179 2-180 63-265 (268)
16 3cjw_A COUP transcription fact 100.0 1.3E-41 4.4E-46 252.0 14.4 179 2-181 53-232 (244)
17 1xdk_B RAR-beta, retinoic acid 100.0 4.1E-42 1.4E-46 261.7 11.5 178 2-181 87-264 (303)
18 3tx7_B Nuclear receptor subfam 100.0 7.1E-42 2.4E-46 263.9 10.9 180 2-181 167-349 (352)
19 1nq7_A Nuclear receptor ROR-be 100.0 9.4E-42 3.2E-46 252.6 10.9 175 2-180 66-244 (244)
20 3oll_A Estrogen receptor beta; 100.0 1.7E-41 5.8E-46 250.8 10.5 177 2-180 49-236 (240)
21 1hg4_A Ultraspiracle; nuclear 100.0 6.7E-41 2.3E-45 252.6 13.1 180 2-181 63-268 (279)
22 1l2j_A Estrogen receptor beta; 100.0 4.9E-41 1.7E-45 252.1 11.6 177 2-180 75-262 (271)
23 3b0t_A Vitamin D3 receptor; nu 100.0 2E-41 6.7E-46 252.4 9.3 177 2-180 72-254 (254)
24 1pdu_A DHR38, nuclear hormone 100.0 2.2E-41 7.4E-46 250.4 9.4 176 2-181 63-240 (244)
25 2p1t_A Retinoic acid receptor 100.0 1.1E-40 3.8E-45 246.5 12.1 178 2-181 57-235 (240)
26 1yye_A ER-beta, estrogen recep 100.0 5.3E-41 1.8E-45 251.5 10.1 177 2-180 47-234 (268)
27 1xpc_A Estrogen receptor; nucl 100.0 2E-41 6.8E-46 251.5 7.6 178 2-181 51-240 (248)
28 2r40_D Ecdysone receptor, 20-h 100.0 6.4E-41 2.2E-45 250.9 10.3 176 2-181 84-262 (266)
29 1n83_A Nuclear receptor ROR-al 100.0 1.3E-40 4.5E-45 249.5 12.0 176 2-181 81-260 (270)
30 1lbd_A RXR_LBD, retinoid X rec 100.0 7.6E-41 2.6E-45 252.7 10.0 178 2-181 99-277 (282)
31 3ipq_A Oxysterols receptor LXR 100.0 9.8E-41 3.4E-45 251.9 10.6 176 2-180 104-280 (283)
32 2ocf_A Estrogen receptor; estr 100.0 5.9E-41 2E-45 254.2 7.7 178 2-181 60-249 (298)
33 1nrl_A Orphan nuclear receptor 100.0 2.3E-40 7.7E-45 252.5 10.8 175 2-181 136-313 (316)
34 2o4j_A Vitamin D3 receptor; nu 100.0 1.7E-40 5.7E-45 251.6 9.2 178 2-181 75-258 (292)
35 1xvp_B Orphan nuclear receptor 100.0 1.6E-40 5.6E-45 246.4 8.6 174 2-180 70-246 (246)
36 2hc4_A Vitamin D receptor; alp 100.0 6.6E-40 2.2E-44 249.1 11.4 178 2-181 118-299 (302)
37 3vhv_A Mineralocorticoid recep 100.0 1.5E-40 5.2E-45 248.0 7.5 179 2-180 56-241 (260)
38 2nxx_E Ecdysone receptor (ECR, 100.0 7.3E-40 2.5E-44 243.0 10.6 176 2-181 68-244 (248)
39 3u9q_A Peroxisome proliferator 100.0 5.5E-40 1.9E-44 245.9 10.0 176 2-181 89-268 (269)
40 3cqv_A Nuclear receptor subfam 100.0 5.2E-40 1.8E-44 236.5 9.3 163 2-166 36-198 (199)
41 1ovl_A Orphan nuclear receptor 100.0 1.6E-39 5.5E-44 244.1 12.3 175 2-180 90-266 (271)
42 1sqn_A PR, progesterone recept 100.0 2.5E-40 8.6E-45 247.1 7.7 177 2-180 57-242 (261)
43 3mnp_A Glucocorticoid receptor 100.0 4.5E-40 1.5E-44 245.5 8.7 179 2-180 58-242 (261)
44 1osh_A BIle acid receptor; nuc 100.0 5.4E-40 1.8E-44 241.7 8.9 172 2-180 58-230 (232)
45 3dzy_A Retinoic acid receptor 100.0 1.6E-39 5.5E-44 259.4 12.3 178 2-181 284-462 (467)
46 3l0l_A Nuclear receptor ROR-ga 100.0 5.6E-40 1.9E-44 243.5 8.0 173 2-180 72-248 (248)
47 1z5x_E Ecdysone receptor ligan 100.0 1.9E-39 6.5E-44 247.1 10.7 176 2-181 132-308 (310)
48 1t7r_A Androgen receptor; nucl 100.0 3.9E-40 1.3E-44 247.0 6.4 179 2-180 65-250 (269)
49 3vhu_A Mineralocorticoid recep 100.0 9.2E-40 3.2E-44 247.1 7.9 179 2-180 90-275 (294)
50 1pzl_A Hepatocyte nuclear fact 100.0 1.5E-38 5.1E-43 234.7 14.0 178 2-181 57-235 (237)
51 3n00_A REV-ERBA-alpha; reverba 100.0 7.2E-39 2.5E-43 236.9 11.7 162 2-165 81-242 (245)
52 3up3_A Acedaf-12; ligand bindi 100.0 4.9E-39 1.7E-43 237.4 6.5 175 2-180 57-241 (243)
53 3dzy_D Peroxisome proliferator 100.0 4.1E-38 1.4E-42 248.7 11.2 177 2-181 238-417 (419)
54 3gyt_A Nuclear hormone recepto 100.0 8E-37 2.7E-41 225.0 8.5 173 2-181 57-242 (244)
55 1v9x_A Poly (ADP-ribose) polym 42.3 14 0.00049 23.2 2.0 22 5-26 68-89 (114)
56 1uw0_A DNA ligase III; DNA rep 40.4 19 0.00066 22.7 2.4 21 6-26 73-93 (117)
57 2v79_A DNA replication protein 39.4 35 0.0012 22.0 3.7 28 75-102 19-46 (135)
58 3odc_A Poly [ADP-ribose] polym 38.4 12 0.0004 23.5 1.2 21 6-26 75-95 (111)
59 2dmj_A Poly (ADP-ribose) polym 34.2 19 0.00065 22.3 1.6 19 8-26 77-95 (106)
60 2kwv_A RAD30 homolog B, DNA po 28.6 26 0.0009 18.1 1.3 16 11-26 20-35 (48)
61 2cs2_A Poly [ADP-ribose] polym 25.9 28 0.00095 22.6 1.4 21 6-26 83-103 (134)
62 1wgp_A Probable cyclic nucleot 24.9 45 0.0015 20.5 2.3 25 2-26 4-28 (137)
63 2ixm_A Serine/threonine-protei 23.1 1.5E+02 0.0051 22.1 5.0 56 68-141 27-83 (303)
64 3dv8_A Transcriptional regulat 21.2 35 0.0012 23.1 1.3 25 3-27 2-26 (220)
65 2pqq_A Putative transcriptiona 20.2 79 0.0027 19.5 2.8 26 2-27 3-28 (149)
No 1
>2iz2_A FTZ-F1 alpha, nuclear hormone receptor FTZ-F1; nuclear protein, phosphorylation, PAIR-RULE protein; 2.8A {Drosophila melanogaster} PDB: 2xhs_A
Probab=100.00 E-value=1.1e-43 Score=262.80 Aligned_cols=180 Identities=19% Similarity=0.310 Sum_probs=163.4
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCCcccccCCCCCccchHHHHHHHHHHHHHh
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNGKASQTAADVRVLNGVLQRF 81 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (181)
+|+|||++|+|.+|+.+||+.|+|++|.++++++.|+++......+.+.+++|..++.+.....+.....+.+.+++.+|
T Consensus 62 ~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l 141 (243)
T 2iz2_A 62 QVDWARNTVFFKDLKVDDQMKLLQHSWSDMLVLDHLHHRIHNGLPDETQLNNGQVFNLMSLGLLGVPQLGDYFNELQNKL 141 (243)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSCCBCSSSCBCCCCTTTTSSTTSSHHHHHHHHHHH
T ss_pred HHHHHHhChhHhhCChHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceeecCCcccChhhHhhcchHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999876433446677888777665433334345567889999999
Q ss_pred hhcCCChhhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHHhhhhhhhccchhhHHHHh
Q psy17882 82 RLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIF 161 (181)
Q Consensus 82 ~~l~l~~~E~~ll~ai~l~~pd~~~l~~~~~i~~~~~~~~~~L~~~~~~~~~~~~~r~~~Ll~~l~~lr~~~~~~~e~l~ 161 (181)
+++++|.+||+||||+++||||++|+++..+|+++|++|..+|.+||..++|+++.||++||.++|.||+++.++.|.++
T Consensus 142 ~~L~ld~~E~~lLkAivL~npd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~L~~Lr~l~~~~~e~l~ 221 (243)
T 2iz2_A 142 QDLKFDMGDYVCMKFLILLNPSVRGIVNRKTVSEGHDNVQAALLDYTLTCYPSVNDKFRGLVNILPEIHAMAVRGEDHLY 221 (243)
T ss_dssp HHTTCCHHHHHHHHHHHHCCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTSTTHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCCccHHHHHHHHhcC
Q psy17882 162 FAKTVANTSMEKLLCDMYKN 181 (181)
Q Consensus 162 ~~~~~~~~~~~~ll~e~l~~ 181 (181)
+.+++|.+++++++.||+++
T Consensus 222 ~~~~~g~~~~~~Ll~Eml~~ 241 (243)
T 2iz2_A 222 TKHCAGSAPTQTLLMEMLHA 241 (243)
T ss_dssp HHHHTTCSCSSSHHHHHHHT
T ss_pred HhhccCCCcHHHHHHHHHhc
Confidence 99999999999999999974
No 2
>1fcy_A RAR-gamma-1, retinoic acid receptor gamma-1; isotype selectivity, retinoid ligand complexes, drug design, antiparallel alpha-helical sandwich fold; HET: 564 LMU; 1.30A {Homo sapiens} SCOP: a.123.1.1 PDB: 1fcz_A* 1fcx_A* 1fd0_A* 1exa_A* 1exx_A* 1dkf_B*
Probab=100.00 E-value=5.3e-44 Score=263.57 Aligned_cols=177 Identities=20% Similarity=0.288 Sum_probs=160.4
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCCcccccCCCCCccchHHHHHHHHHHHHHh
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNGKASQTAADVRVLNGVLQRF 81 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (181)
+|+|||++|+|.+|+.+||+.|+|++|.++++++.|+++.+. .+.+.+++|..++++.....+.....+.+.+++.+|
T Consensus 60 ~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~l~~a~~~~~~--~~~l~~~~g~~~~~~~~~~~g~~~~~~~i~~~~~~l 137 (236)
T 1fcy_A 60 IVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPE--QDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQL 137 (236)
T ss_dssp HHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHTEETT--TTEEECTTCBEEEHHHHHHHTTGGGHHHHHHHHHHH
T ss_pred HHHHHhcCCCcccCCHHHHHHHHHHhHHHHHHHHHHHHhccC--CCeEEeCCCceecHHHHHHcCcHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999864 347788888766543222223334567788999999
Q ss_pred hhcCCChhhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHHhhhhhhhccchhhHHHHh
Q psy17882 82 RLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIF 161 (181)
Q Consensus 82 ~~l~l~~~E~~ll~ai~l~~pd~~~l~~~~~i~~~~~~~~~~L~~~~~~~~~~~~~r~~~Ll~~l~~lr~~~~~~~e~l~ 161 (181)
+++++|++||+||||+++||||++|+++..+|+++|++|..+|.+||..++|+++.||++||.++|.||.++.++.|.++
T Consensus 138 ~~L~ld~~E~~lLkaivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~L~~Lr~l~~~~~e~l~ 217 (236)
T 1fcy_A 138 LPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAI 217 (236)
T ss_dssp GGGCCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCCccHHHHHHHHhc
Q psy17882 162 FAKTVANTSMEKLLCDMYK 180 (181)
Q Consensus 162 ~~~~~~~~~~~~ll~e~l~ 180 (181)
+.++.|++++++|+.||++
T Consensus 218 ~~~~~~~~~~~~Ll~Eml~ 236 (236)
T 1fcy_A 218 TLKMEIPGPMPPLIREMLE 236 (236)
T ss_dssp HHHTTSSSCCCHHHHHHHC
T ss_pred HHHccCCCCccHHHHHHhC
Confidence 9999999999999999985
No 3
>3ltx_A Estrogen receptor; constitutive, nuclear receptor, DNA-binding, metal-binding, nucleus, transcription, transcription regulation, zinc-finger; 2.60A {Crassostrea gigas}
Probab=100.00 E-value=7e-44 Score=263.90 Aligned_cols=178 Identities=24% Similarity=0.316 Sum_probs=162.0
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCCcccccCCCCCccchHHHHHHHHHHHHHh
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNGKASQTAADVRVLNGVLQRF 81 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (181)
+|+|||++|+|.+|+.+||+.|+|++|.++++++.|+++.+. +.+.+.+++|..++.+.....+.....+.+.+++.+|
T Consensus 52 ~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~-~~~~l~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~l 130 (243)
T 3ltx_A 52 LINWAKNVPGYTDLSLSDQVHLIECCWMELLLLNCAFRSIEH-GGKSLAFAPDLVLDRSSWSTVEMTEIFEQVAAVSEQM 130 (243)
T ss_dssp HHHHHTTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHTTTT-TTSEEEEETTEEEEHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcchhcCCHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCeEEecCCcccchhhhcccCHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999998876 4445777777666543222234456677888999999
Q ss_pred hhcCCChhhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHHhhhhhhhccchhhHHHHh
Q psy17882 82 RLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIF 161 (181)
Q Consensus 82 ~~l~l~~~E~~ll~ai~l~~pd~~~l~~~~~i~~~~~~~~~~L~~~~~~~~~~~~~r~~~Ll~~l~~lr~~~~~~~e~l~ 161 (181)
+++++|.+||+||||++|||||++|+++..+|+++|++|..+|.+||..++|+++.||++||.++|.||+++..+.|.++
T Consensus 131 ~~L~ld~~E~~lLkaivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~Lp~Lr~l~~~~~e~l~ 210 (243)
T 3ltx_A 131 MQNHLHKDELLLLQAMVLVNAEVRRLASYNQIFNMQQSLLDAIVDTAQKYHPDNVRHVPAVLLLLTHIRQAGERGIAFFQ 210 (243)
T ss_dssp HHTTCCHHHHHHHHHHHHHTSCCSCCTTHHHHHHHHHHHHHHHHHHHHHHSTTCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCCccHHHHHHHHhc
Q psy17882 162 FAKTVANTSMEKLLCDMYK 180 (181)
Q Consensus 162 ~~~~~~~~~~~~ll~e~l~ 180 (181)
+.+++|.+++++++.||++
T Consensus 211 ~~~~~g~~~~~~Ll~Eml~ 229 (243)
T 3ltx_A 211 RLKSEGVVTFCDLLKEMLD 229 (243)
T ss_dssp HHHHHCSSCCCHHHHHHHH
T ss_pred HHHhcCCCChhHHHHHHHh
Confidence 9999999999999999986
No 4
>2e2r_A Estrogen-related receptor gamma; ERR gamma, BPA, nuclear receptor, transcription; HET: 2OH; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 2zas_A* 2zbs_A 2zkc_A* 2p7g_A* 1vjb_A* 1tfc_A 2p7a_A* 2p7z_A* 2gpu_A* 1kv6_A 2gp7_A 2gpp_A* 2gpo_A* 2gpv_A* 1s9q_A* 1s9p_A* 2ewp_A*
Probab=100.00 E-value=1.8e-43 Score=261.78 Aligned_cols=178 Identities=25% Similarity=0.443 Sum_probs=161.6
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCCcccccCCCCCccchHHHHHHHHHHHHHh
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNGKASQTAADVRVLNGVLQRF 81 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (181)
+|+|||++|+|.+|+.+||+.|+|++|.++++++.|+++.+.++ .+.+++|..++.+.....+.....+.+.+++.+|
T Consensus 64 ~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 141 (244)
T 2e2r_A 64 IIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFED--ELVYADDYIMDEDQSKLAGLLDLNNAILQLVKKY 141 (244)
T ss_dssp HHHHHTTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHTTTSSS--CEEEETTEEECHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHhcccCC--eEEecCCEeecHHHhhhccHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999987633 5667777665543222234456678888999999
Q ss_pred hhcCCChhhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHHhhhhhhhccchhhHHHHh
Q psy17882 82 RLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIF 161 (181)
Q Consensus 82 ~~l~l~~~E~~ll~ai~l~~pd~~~l~~~~~i~~~~~~~~~~L~~~~~~~~~~~~~r~~~Ll~~l~~lr~~~~~~~e~l~ 161 (181)
+++++|.+||+||||+++||||++|+++..+|+++|++|..+|.+|+..++|+++.||++||.++|.||+++.++.|.++
T Consensus 142 ~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~Rf~~LL~~L~~Lr~~~~~~~e~l~ 221 (244)
T 2e2r_A 142 KSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFY 221 (244)
T ss_dssp HHHTCCHHHHHHHHHHHHHTCCCTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCCccHHHHHHHHhcC
Q psy17882 162 FAKTVANTSMEKLLCDMYKN 181 (181)
Q Consensus 162 ~~~~~~~~~~~~ll~e~l~~ 181 (181)
+.+++|.+++++|+.||+++
T Consensus 222 ~~~~~~~~~~~~Ll~Eml~~ 241 (244)
T 2e2r_A 222 NIKLEGKVPMHKLFLEMLEA 241 (244)
T ss_dssp HHHHHCCSCCCHHHHHHHTS
T ss_pred HhhcCCCCChHHHHHHHHhC
Confidence 99999999999999999974
No 5
>3k6p_A Steroid hormone receptor ERR1; estrogen related receptor alpha, DNA-binding, isopeptide BON binding, nucleus, phosphoprotein, transcription; HET: 5FB; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xb7_A 2pjl_A* 3d24_A
Probab=100.00 E-value=1.9e-43 Score=262.23 Aligned_cols=177 Identities=27% Similarity=0.419 Sum_probs=157.8
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCCcccccCCCCCccchHHHHHHHHHHHHHh
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNGKASQTAADVRVLNGVLQRF 81 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (181)
+|+|||++|+|.+|+.+||+.|+|++|.++++++.|+++.+.+ +.+.+++|..++++.....+..+..+.+.+++.++
T Consensus 64 ~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~lL~~a~~s~~~~--~~l~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~l 141 (248)
T 3k6p_A 64 TISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSLPLQ--DELAFAEDLVLDEEGARAAGLGELGAALLQLVRRL 141 (248)
T ss_dssp HHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHTTSS--SCEEEETTEEECHHHHHHTTTTTHHHHHHHHHHHH
T ss_pred HHHHHhcCcccccCCHHHHHHHHHHHHHHHHHHHHHHHccCCC--CeEEeCCCcccChhhhhhccHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999998874 57788888766543222223335668889999999
Q ss_pred hhcCCChhhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCC----CCcchHHHHHhhhhhhhccchhhH
Q psy17882 82 RLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHP----AQPARFGRLLLMTSQCRNIPSARV 157 (181)
Q Consensus 82 ~~l~l~~~E~~ll~ai~l~~pd~~~l~~~~~i~~~~~~~~~~L~~~~~~~~~----~~~~r~~~Ll~~l~~lr~~~~~~~ 157 (181)
+++++|.+||+||||++|||||++|+++..+|+++|++|..+|.+||..++| +++.||++||.++|.||+++.++.
T Consensus 142 ~~L~ld~~E~~lLkAivL~npd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~~~~~Rf~~LL~~Lp~Lr~l~~~~~ 221 (248)
T 3k6p_A 142 QALRLEREEYVLLKALALANSDSVHIEDAEAVEQLREALHEALLEYEAGRAGPGGGAERRRAGRLLLTLPLLRQTAGKVL 221 (248)
T ss_dssp HTTTCCHHHHHHHHHHHHHTCCCTTCSCHHHHHHHHHHHHHHHHHHHHTC----CCCCCH-HHHHHTTHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998 899999999999999999999999
Q ss_pred HHHhhccccCCccHHHHHHHHhc
Q psy17882 158 QHIFFAKTVANTSMEKLLCDMYK 180 (181)
Q Consensus 158 e~l~~~~~~~~~~~~~ll~e~l~ 180 (181)
|.+++++++|.+++++++.||++
T Consensus 222 e~l~~~k~~g~~~i~~Ll~Eml~ 244 (248)
T 3k6p_A 222 AHFYGVKLEGKVPMHKLFLEMLE 244 (248)
T ss_dssp HHHHCC-CCCSSCHHHHHHHHHH
T ss_pred HHHHhhcccCCCCHHHHHHHHHh
Confidence 99999999999999999999986
No 6
>3plz_A FTZ-F1 related protein; alpha helical sandwhich, family five, TRAN factor, transcription-receptor-agonist comple; HET: 470; 1.75A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yok_A* 1yuc_A* 4dor_A* 1zdu_A* 4dos_A* 1zh7_A 1pk5_A 3f5c_A
Probab=100.00 E-value=2e-43 Score=263.25 Aligned_cols=180 Identities=24% Similarity=0.405 Sum_probs=162.7
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCCcccccCCCCC-ccch--HHHHHHHHHHH
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNGK-ASQT--AADVRVLNGVL 78 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~ 78 (181)
+|+|||++|+|.+|+.+||+.|+|++|.++++++.|+++......+.+.+++|..++.+... ..+. ....+.+.+++
T Consensus 72 ~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~lL~~a~rs~~~~~~~~l~~~~g~~~~~~~~~~~~g~~~~~~~~~l~~~~ 151 (257)
T 3plz_A 72 IVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELV 151 (257)
T ss_dssp HHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCBTTEEECTTSCEEEHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcChhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCccChHHHhhhcCCcHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999876644557778887766543211 1222 55678889999
Q ss_pred HHhhhcCCChhhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHHhhhhhhhccchhhHH
Q psy17882 79 QRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQ 158 (181)
Q Consensus 79 ~~l~~l~l~~~E~~ll~ai~l~~pd~~~l~~~~~i~~~~~~~~~~L~~~~~~~~~~~~~r~~~Ll~~l~~lr~~~~~~~e 158 (181)
.+|+++++|.+||+||||++|||||++|+++..+|+++|++|..+|.+||..++|+++.||++||.++|.||+++.++.|
T Consensus 152 ~~l~~L~ld~~E~~lLkAivL~npd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~Lp~Lr~l~~~~~e 231 (257)
T 3plz_A 152 AKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEE 231 (257)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHSCTTCCSCTTHHHHHHHHHHHHHHHHHHHHHHCTTSTTHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccCCccHHHHHHHHhcC
Q psy17882 159 HIFFAKTVANTSMEKLLCDMYKN 181 (181)
Q Consensus 159 ~l~~~~~~~~~~~~~ll~e~l~~ 181 (181)
.+++.+++|.+++++++.||+++
T Consensus 232 ~l~~~~~~g~~~i~~Ll~Eml~~ 254 (257)
T 3plz_A 232 YLYYKHLNGDVPYNNLLIEMLHA 254 (257)
T ss_dssp HHHHHHHTTCSCCCSHHHHHHTC
T ss_pred HHhhhhhcCCCCHHHHHHHHHhc
Confidence 99999999999999999999974
No 7
>3kmr_A Retinoic acid receptor alpha; nuclear receptor transcription factor ligand binding domain, binding, metal-binding, nucleus, phosphoprotein; HET: EQN; 1.80A {Homo sapiens} PDB: 3kmz_B* 3a9e_B* 4dm6_A* 1xap_A* 4dm8_A* 2lbd_A* 3lbd_A* 4lbd_A*
Probab=100.00 E-value=3.6e-43 Score=262.92 Aligned_cols=178 Identities=21% Similarity=0.312 Sum_probs=160.2
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCCcccccCCCCCccchHHHHHHHHHHHHHh
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNGKASQTAADVRVLNGVLQRF 81 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (181)
+|+|||++|+|.+|+.+||+.|+|++|.++++++.|+++.+. .+.+.+++|..++++.....+.....+.+.+++.+|
T Consensus 84 ~VewaK~lP~F~~L~~~DQi~LLk~~~~el~lL~~a~~s~~~--~~~l~~~~g~~~~~~~~~~~g~~~~~~~i~~~~~~l 161 (266)
T 3kmr_A 84 TVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPE--QDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQL 161 (266)
T ss_dssp HHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHTEETT--TTEEECTTSBEEEHHHHHHHTTGGGHHHHHHHHHHH
T ss_pred HHHHHHcCcChhhCCHHHHHHHHHHHHHHHHHHHHHHHhccC--CCeEEecCCcccchHHHhhcchHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999998764 347778887665543222122334567788999999
Q ss_pred hhcCCChhhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHHhhhhhhhccchhhHHHHh
Q psy17882 82 RLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIF 161 (181)
Q Consensus 82 ~~l~l~~~E~~ll~ai~l~~pd~~~l~~~~~i~~~~~~~~~~L~~~~~~~~~~~~~r~~~Ll~~l~~lr~~~~~~~e~l~ 161 (181)
+++++|.+||+||||++|||||++|+++..+|+++|++|..+|.+||..++|+++.||++||.++|.||.++.++.|.++
T Consensus 162 ~~L~ld~~E~~lLkAIvL~~pd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~Lp~Lr~i~~~~~e~l~ 241 (266)
T 3kmr_A 162 LPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVI 241 (266)
T ss_dssp GGGCCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcccHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCCccHHHHHHHHhcC
Q psy17882 162 FAKTVANTSMEKLLCDMYKN 181 (181)
Q Consensus 162 ~~~~~~~~~~~~ll~e~l~~ 181 (181)
+.+++|++++++|+.||+++
T Consensus 242 ~~k~~~~~~~~~Ll~Eml~~ 261 (266)
T 3kmr_A 242 TLKMEIPGSMPPLIQEMLEN 261 (266)
T ss_dssp HHHHHSSSCCCHHHHHHHC-
T ss_pred HHHhcCCCCcchHHHHHhcC
Confidence 99999999999999999975
No 8
>2nxx_A Ultraspiracle (USP, NR2B4); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=100.00 E-value=1.3e-42 Score=256.04 Aligned_cols=178 Identities=30% Similarity=0.562 Sum_probs=160.7
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCCcccccCCCCCccchHHH-HHHHHHHHHH
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNGKASQTAAD-VRVLNGVLQR 80 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 80 (181)
+|+|||++|+|.+|+.+||+.|+|++|.++++++.|+++.+.. +.+++++|..++++.....+.... .+.+.+++.+
T Consensus 53 ~vewaK~ip~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (235)
T 2nxx_A 53 LVQWAKLVPHFTSLPLTDQVQLLRAGWNELLIAAFSHRSMQAQ--DAIVLATGLTVNKSTAHAVGVGNIYDRVLSELVNK 130 (235)
T ss_dssp HHHHHHHSTTSTTSCHHHHHHHHHHHHHHHHHHHHHHTTSSSS--SSEECSSSCEECSSSCSSSSCSSSHHHHHHHTHHH
T ss_pred HHHHHHcCCChhhCCHHHHHHHHHHhHHHHHHHHHHHhcccCC--CceEecCCcccccchhhhhchHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999998763 467788887776654332222222 2457899999
Q ss_pred hhhcCCChhhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHHhhhhhhhccchhhHHHH
Q psy17882 81 FRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHI 160 (181)
Q Consensus 81 l~~l~l~~~E~~ll~ai~l~~pd~~~l~~~~~i~~~~~~~~~~L~~~~~~~~~~~~~r~~~Ll~~l~~lr~~~~~~~e~l 160 (181)
++++++|.+||+||||+++||||++|+++...|+++|++|..+|.+||..++|+++.||++||.++|.||+++..+.|.+
T Consensus 131 l~~L~ld~~E~~lLkaivL~~pd~~gL~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~Rf~~LL~~L~~Lr~~~~~~~e~l 210 (235)
T 2nxx_A 131 MKEMKMDKTELGCLRAIILYNPDVRGIKSVQEVEMLREKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHL 210 (235)
T ss_dssp HHHHTCCHHHHHHHHHHHHCCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTHHHHHHHHHHTCCSCT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCCccHHHHHHHHhcC
Q psy17882 161 FFAKTVANTSMEKLLCDMYKN 181 (181)
Q Consensus 161 ~~~~~~~~~~~~~ll~e~l~~ 181 (181)
++.+++|.+++++++.||+++
T Consensus 211 ~~~~~~g~~~~~~Ll~eml~~ 231 (235)
T 2nxx_A 211 FFFKLIGDVPIDTFLMEMLEG 231 (235)
T ss_dssp TTTSSSSCCCHHHHHHHHTTC
T ss_pred HhhcccCCCcHHHHHHHHHhC
Confidence 999999999999999999974
No 9
>3p0u_A Nuclear receptor subfamily 2 group C member 2; ligand binding domain, orphan nuclear receptor, testicular R 4, signaling protein; 3.00A {Homo sapiens}
Probab=100.00 E-value=4e-42 Score=255.24 Aligned_cols=179 Identities=25% Similarity=0.411 Sum_probs=154.9
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCCcccc----cCCC---CCccchHHHHHHH
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVA----AVPN---GKASQTAADVRVL 74 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~ 74 (181)
+|+|||++|+|.+|+.+||+.|+|++|.++++++.|+++.+.+.. .+..+++... +.+. .........++.+
T Consensus 50 ~VewaK~iP~F~~L~~~DQ~~LLk~~w~el~~L~~a~~s~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 128 (249)
T 3p0u_A 50 SMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLS-TILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKL 128 (249)
T ss_dssp HHHHHHTCTTTGGGCHHHHHHHHHTTHHHHHHHHHHHTTTSCCCC-CCCCC-CC---CC---------CCCCHHHHHHHH
T ss_pred HHHHHHcCcchhcCCHHHHHHHHHHHHHHHHHHHHHHHcccCCcc-hhhcccccccccccccccchhhhhhhHHHHHHHH
Confidence 689999999999999999999999999999999999999876433 3333332221 1111 1122334566778
Q ss_pred HHHHHHhhhcCCChhhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHHhhhhhhhccch
Q psy17882 75 NGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPS 154 (181)
Q Consensus 75 ~~~~~~l~~l~l~~~E~~ll~ai~l~~pd~~~l~~~~~i~~~~~~~~~~L~~~~~~~~~~~~~r~~~Ll~~l~~lr~~~~ 154 (181)
.+++.+++++++|.+||+||||++|||||++|+++..+|+++|++|..+|.+||..++|+++.||++||.++|.||+++.
T Consensus 129 ~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~Rf~~LL~~L~~Lr~i~~ 208 (249)
T 3p0u_A 129 QEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEAAQMELQDYVQATYSEDTYRLARILVRLPALRLMSS 208 (249)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHTCSCSTTCCCSHHHHHHHHHHHHHHHHHHHHHTTTCSTHHHHHHTTHHHHHTSCH
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhccccCCccHHHHHHHHhcC
Q psy17882 155 ARVQHIFFAKTVANTSMEKLLCDMYKN 181 (181)
Q Consensus 155 ~~~e~l~~~~~~~~~~~~~ll~e~l~~ 181 (181)
++.|.+++.+++|.+++++++.|||+.
T Consensus 209 ~~~e~l~f~~~~g~~~i~~Ll~eml~~ 235 (249)
T 3p0u_A 209 NITEELFFTGLIGNVSIDSIIPYILKM 235 (249)
T ss_dssp HHHHHHHCCSSHHHHCHHHHHHHHTTC
T ss_pred HHHHHeeeecccCCCCHHHHHHHHHhC
Confidence 999999999999999999999999974
No 10
>1g2n_A Ultraspiracle protein; antiparallel alpha-helical sandwich, structural proteomics in europe, spine, structural genomics, gene regulation; HET: EPH; 1.65A {Heliothis virescens} SCOP: a.123.1.1 PDB: 2r40_A* 1r20_A* 1r1k_A* 3ixp_A*
Probab=100.00 E-value=1.4e-42 Score=259.83 Aligned_cols=180 Identities=29% Similarity=0.506 Sum_probs=159.1
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccC--CCCc--------------cccCCcccccCCCCCcc
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLL--ESSP--------------LFNASEHVAAVPNGKAS 65 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~--~~~~--------------~~~~~~~~~~~~~~~~~ 65 (181)
+|+|||++|+|.+|+.+||+.|+|++|.++++++.|+++.+.. +.+. +.+++|..++++.....
T Consensus 58 ~VewaK~lp~F~~L~~~DQ~~LLk~~w~el~lL~~a~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~ 137 (264)
T 1g2n_A 58 LVVWARDIPHFSQLEMEDQILLIKGSWNELLLFAIAWRSMEFLTEERDGVDGTGNRTTSPPQLMCLMPGMTLHRNSALQA 137 (264)
T ss_dssp HHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHGGGSCCC----------CCCCCCEEEEETTEEEEHHHHHHH
T ss_pred HHHHHHcCCChhcCCHHHHHHHHHHhhHHHHHHHHHHHccccccccccccccccccccccccceeecCCcccCchhhhhc
Confidence 6899999999999999999999999999999999999998761 1223 67777766654322222
Q ss_pred chHHHH-HHHHHHHHHhhhcCCChhhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHHh
Q psy17882 66 QTAADV-RVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLL 144 (181)
Q Consensus 66 ~~~~~~-~~~~~~~~~l~~l~l~~~E~~ll~ai~l~~pd~~~l~~~~~i~~~~~~~~~~L~~~~~~~~~~~~~r~~~Ll~ 144 (181)
+..... +.+.+++.+|+++++|.+||+||||++|||||++|+++...|+++|++|..+|.+||..+||+++.||++||.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~L~ld~~E~~lLkAivL~npd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~Rf~~LL~ 217 (264)
T 1g2n_A 138 GVGQIFDRVLSELSLKMRTLRVDQAEYVALKAIILLNPDVKGLKNRQEVEVLREKMFLCLDEYCRRSRSSEEGRFAALLL 217 (264)
T ss_dssp TCHHHHHHHHHHTHHHHHHTTCCHHHHHHHHHHHHSCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCHhhHHHHHHH
Confidence 333444 6788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccchhhHHHHhhccccCCccHHHHHHHHhcC
Q psy17882 145 MTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYKN 181 (181)
Q Consensus 145 ~l~~lr~~~~~~~e~l~~~~~~~~~~~~~ll~e~l~~ 181 (181)
++|.||+++.++.|.+++.+++|.+++++++.||+++
T Consensus 218 ~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~Eml~~ 254 (264)
T 1g2n_A 218 RLPALRSISLKSFEHLFFFHLVADTSIAGYIRDALRN 254 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCBCTTTHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHhC
Confidence 9999999999999999999999999999999999974
No 11
>3v3e_B Nuclear receptor subfamily 4 group A member 1; orphan nuclear receptor, transcription; 2.06A {Homo sapiens} PDB: 3v3q_A* 2qw4_A 1yje_A
Probab=100.00 E-value=5.5e-43 Score=260.50 Aligned_cols=175 Identities=28% Similarity=0.387 Sum_probs=156.9
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCCcccccCCCCCccchHHHHHHHHHHHHHh
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNGKASQTAADVRVLNGVLQRF 81 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (181)
+|+|||++|||.+|+.+||+.|+|++|.|+++++.|+++.+.. +.+.+++|...++... ..+.+..++.+.+++.+|
T Consensus 68 iV~wAK~iP~F~~L~~~DQi~LLk~~w~ElllL~~a~~~~~~~--~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~l 144 (257)
T 3v3e_B 68 IRKWAEKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGE--GKLIFCSGLVLHRLQC-ARGFGDWIDSILAFSRSL 144 (257)
T ss_dssp HHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHSBGGG--TEEECTTSBEEEHHHH-HHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccCCHHHHHHHHHHHHHHHHHHHHHHhccCCC--CeeEeCCCccccHHHH-HhhhHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999998753 3678888877665321 223345678899999999
Q ss_pred hhcCCChhhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhh--cCCCCcchHHHHHhhhhhhhccchhhHHH
Q psy17882 82 RLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRT--HHPAQPARFGRLLLMTSQCRNIPSARVQH 159 (181)
Q Consensus 82 ~~l~l~~~E~~ll~ai~l~~pd~~~l~~~~~i~~~~~~~~~~L~~~~~~--~~~~~~~r~~~Ll~~l~~lr~~~~~~~e~ 159 (181)
+++++|.+||+||||++||| |++|+++..+|+++|+++..+|++|+.. .+|+++.||++||.+||+||+++.++.|.
T Consensus 145 ~~L~ld~~E~a~LkAivLfs-d~~gL~~~~~Ve~lqe~~~~aL~~yi~~~~~~p~~~~rf~kLL~~Lp~LR~l~~~~~e~ 223 (257)
T 3v3e_B 145 HSLLVDVPAFACLSALVLIT-DRHGLQEPRRVEELQNRIASCLKEHVAAVAGEPQPASCLSRLLGKLPELRTLCTQGLQR 223 (257)
T ss_dssp HHTTCCHHHHHHHHHHHHSS-CCTTCSSHHHHHHHHHHHHHHHHHHHHHHHCSCC-CHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHhC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998 8999999999999999999999999974 46789999999999999999999999999
Q ss_pred HhhccccCCccHHHHHHHHhc
Q psy17882 160 IFFAKTVANTSMEKLLCDMYK 180 (181)
Q Consensus 160 l~~~~~~~~~~~~~ll~e~l~ 180 (181)
++++++.|.+|+++|+.|||.
T Consensus 224 l~~~k~~~~~~~~~Ll~Emf~ 244 (257)
T 3v3e_B 224 IFYLKLEDLVPPPPIIDKIFM 244 (257)
T ss_dssp HHHHHHHCSSCCCHHHHHHHH
T ss_pred HHHhhcCCCCCccHHHHHHHH
Confidence 999999999999999999985
No 12
>3vi8_A Peroxisome proliferator-activated receptor alpha; nuclear receptor, protein-ligand complex, PPAR, transcriptio; HET: 13M; 1.75A {Homo sapiens} PDB: 2znn_A* 3et1_A* 3kdu_A* 3kdt_A* 2rew_A* 1i7g_A* 3g8i_A* 1kkq_A* 1k7l_A* 3sp6_A* 2npa_A* 2p54_A* 3fei_A* 3tkm_A* 2znq_A* 2znp_A* 3sp9_A* 3gwx_A* 3dy6_A* 1gwx_A* ...
Probab=100.00 E-value=2.7e-42 Score=258.73 Aligned_cols=178 Identities=19% Similarity=0.260 Sum_probs=156.1
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCCcccccCC-CCCccchHHHHHHHHHHHHH
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP-NGKASQTAADVRVLNGVLQR 80 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 80 (181)
+|+|||++|+|.+|+.+||++|+|++|.|+++++.|+++.+. ...+.++++...... .....+....++.+.+++.+
T Consensus 92 iVewAK~iPgF~~L~~~DQi~LLk~~w~ElllL~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 169 (273)
T 3vi8_A 92 LTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKD--GMLVAYGNGFITREFLKSLRKPFCDIMEPKFDFAMK 169 (273)
T ss_dssp HHHHGGGSTTTTTSCHHHHHHHHHHHHHHHHHHHHGGGEETT--EEEETTTTEEEEHHHHHHSCTTTHHHHHHHHHHHHH
T ss_pred HHHHHccCcCcccCCHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCeeeeCCCccchHHHHHhhhhHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999887653 334555555433221 11223456778889999999
Q ss_pred hhhcCCChhhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHHhhhhhhhccchhhHHHH
Q psy17882 81 FRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHI 160 (181)
Q Consensus 81 l~~l~l~~~E~~ll~ai~l~~pd~~~l~~~~~i~~~~~~~~~~L~~~~~~~~~~~~~r~~~Ll~~l~~lr~~~~~~~e~l 160 (181)
|+++++|++||+||||++|||||++|+++..+|+++|++|..+|++|+..+||+++.||++||.+||+||+++..+.|.+
T Consensus 170 ~~~L~ld~~E~alLkAivLf~pd~~gL~~~~~Ve~lqe~~~~aL~~yi~~~~p~~~~rF~kLL~~Lp~LR~l~~~~~e~l 249 (273)
T 3vi8_A 170 FNALELDDSDISLFVAAIICCGDRPGLLNVGHIEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMADLRQLVTEHAQLV 249 (273)
T ss_dssp HHTTCCCHHHHHHHHHHHHSCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hh-ccccCCccHHHHHHHHhcC
Q psy17882 161 FF-AKTVANTSMEKLLCDMYKN 181 (181)
Q Consensus 161 ~~-~~~~~~~~~~~ll~e~l~~ 181 (181)
+. ....+.+++++|+.||+++
T Consensus 250 ~~~k~~~~~~~~~~Ll~Emf~d 271 (273)
T 3vi8_A 250 QIIKKTESDAALHPLLQEIYRD 271 (273)
T ss_dssp HHHHHHCTTCCCCHHHHHHHTT
T ss_pred HHHHccCCCCCccHHHHHHHHh
Confidence 75 4568999999999999974
No 13
>1ymt_A Steroidogenic factor 1; SF-1, ligand-binding domain, ligand, phosphatidyl glycerol, CO-repressor peptide, transcription; HET: DR9; 1.20A {Mus musculus} PDB: 3f7d_A* 1yp0_A* 1yow_A* 1zdt_A*
Probab=100.00 E-value=1.6e-42 Score=257.21 Aligned_cols=180 Identities=22% Similarity=0.369 Sum_probs=161.0
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCCcccccCCCCC-ccc--hHHHHHHHHHHH
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNGK-ASQ--TAADVRVLNGVL 78 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~ 78 (181)
+|+|||++|+|.+|+.+||+.|+|++|.++++++.|+++.+..+.+.+.+++|..++.+... ..+ .....+.+.+++
T Consensus 61 ~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (246)
T 1ymt_A 61 IVDWARRCMVFKELEVADQMTLLQNSWSELLVLDHIYRQVQYGKEDSILLVTGQEVELSTVAVQAGSLLHSLVLRAQELV 140 (246)
T ss_dssp HHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTEEECTTSCEEEHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhChhHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeeEecCCCccchhhhhhhcchhHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999987544556777777665432111 111 235667889999
Q ss_pred HHhhhcCCChhhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHHhhhhhhhccchhhHH
Q psy17882 79 QRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQ 158 (181)
Q Consensus 79 ~~l~~l~l~~~E~~ll~ai~l~~pd~~~l~~~~~i~~~~~~~~~~L~~~~~~~~~~~~~r~~~Ll~~l~~lr~~~~~~~e 158 (181)
.+|+++++|.+||+||||++|||||++|+++...|+++|++|..+|.+||..++|+++.||++||.++|.||+++..+.|
T Consensus 141 ~~~~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~Rf~~LL~~L~~Lr~~~~~~~e 220 (246)
T 1ymt_A 141 LQLHALQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYTLSHYPHSGDKFQQLLLSLVEVRALSMQAKE 220 (246)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHTCSCGGGSSCHHHHHHHHHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccCCccHHHHHHHHhcC
Q psy17882 159 HIFFAKTVANTSMEKLLCDMYKN 181 (181)
Q Consensus 159 ~l~~~~~~~~~~~~~ll~e~l~~ 181 (181)
.+++.+++|.+++++|+.||+++
T Consensus 221 ~l~~~~~~~~~~~~~Ll~Eml~~ 243 (246)
T 1ymt_A 221 YLYHKHLGNEMPRNNLLIEMLQA 243 (246)
T ss_dssp HHHHHHHTTCSCTTCHHHHHHHC
T ss_pred HHHhhcccCCCcHHHHHHHHHhC
Confidence 99999999999999999999874
No 14
>3ilz_A Thyroid hormone receptor, alpha isoform 1 variant; nuclear receptor, signaling protein; HET: B72; 1.85A {Homo sapiens} SCOP: a.123.1.1 PDB: 3jzb_A* 3hzf_A* 2h79_A* 2h77_A* 1nav_A* 3uvv_A* 1xzx_X* 1y0x_X* 1nq1_A* 3jzc_A* 1nuo_A* 3imy_A* 1nq0_A* 1bsx_A* 1r6g_A* 1nq2_A* 3gws_X* 1n46_A* 2h6w_X* 2j4a_A* ...
Probab=100.00 E-value=1.7e-42 Score=259.63 Aligned_cols=178 Identities=23% Similarity=0.313 Sum_probs=160.5
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCCcccccCCCCCccchHHHHHHHHHHHHHh
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNGKASQTAADVRVLNGVLQRF 81 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (181)
+|+|||++|+|.+|+.+||+.|+|++|.++++++.|+++.+. .+.+.+++|..++++.....+.....+.+.+++.+|
T Consensus 86 ~VewaK~lP~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~--~~~l~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~l 163 (267)
T 3ilz_A 86 VVDFAKKLPMFSELPXEDQIILLKGCCMEIMSLRAAVRYDPE--SDTLTLSGEMAVKREQLKNGGLGVVSDAIFELGKSL 163 (267)
T ss_dssp HHHHHHTSHHHHTSCHHHHHHHHHHHHHHHHHHHHHTTCBTT--TTBEEETTTEEECHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHHhcCcchhhCCHhHHHHHHHHHHHHHHHHHHHHHhcCC--CCEEEecCCeeecHHHHhccCHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999998764 347778887766543322233445677888999999
Q ss_pred hhcCCChhhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHHhhhhhhhccchhhHHHHh
Q psy17882 82 RLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIF 161 (181)
Q Consensus 82 ~~l~l~~~E~~ll~ai~l~~pd~~~l~~~~~i~~~~~~~~~~L~~~~~~~~~~~~~r~~~Ll~~l~~lr~~~~~~~e~l~ 161 (181)
+++++|.+||+||||++|||||++|+++..+|+++|++|..+|.+||..++|+++.||++||.++|.||.++.++.|.++
T Consensus 164 ~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~Rf~~LL~~Lp~Lr~l~~~~~e~l~ 243 (267)
T 3ilz_A 164 SAFNLDDTEVALLQAVLLMSTDRSGLLXVDKIEKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKVTDLRMIGAXHASRFL 243 (267)
T ss_dssp GGGCCCHHHHHHHHHHHHSCCCSSSCSCHHHHHHHHHHHHHHHHHHHHHHTCSSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCCccH-HHHHHHHhcC
Q psy17882 162 FAKTVANTSM-EKLLCDMYKN 181 (181)
Q Consensus 162 ~~~~~~~~~~-~~ll~e~l~~ 181 (181)
+++..|++++ ++|+.||+++
T Consensus 244 ~~k~~~~~~~~~~Ll~Em~~~ 264 (267)
T 3ilz_A 244 HMKVEXPTELFPPLFLEVFED 264 (267)
T ss_dssp C-CCSSCGGGSCHHHHHHTCC
T ss_pred HHHhcCCccCCCcHHHHHhcC
Confidence 9999999997 9999999975
No 15
>3f5c_B Nuclear receptor subfamily 0 group B member 1; transcriptional corepressor, regulatory complex, DNA-binding, lipid-binding, metal-binding; 3.00A {Mus musculus}
Probab=100.00 E-value=5.8e-42 Score=256.33 Aligned_cols=179 Identities=25% Similarity=0.371 Sum_probs=151.9
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCcc--ccCCcccccCCC------------------
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPL--FNASEHVAAVPN------------------ 61 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~--~~~~~~~~~~~~------------------ 61 (181)
+|+|||++|+|.+|+.+||+.|+|++|.|+++++.|+++.+.+..... .+.++...+...
T Consensus 63 ~V~wAK~iP~F~~L~~~DQv~LLk~~w~ElllL~~A~rs~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~p~~~~~~~~ 142 (268)
T 3f5c_B 63 TLRFVKYLPCFQILPLDQQLVLVRSCWAPLLMLELAQDHLHFEMMEIPETNTTQEMLTTRRQETEGPEPAEPQATEQPQM 142 (268)
T ss_dssp HHHHHHTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCC---------------------------------
T ss_pred HHHHHccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHhccccccccchhhhhhhhhccccccccccccccccccccccc
Confidence 689999999999999999999999999999999999999876432110 011111111100
Q ss_pred ----CCccchHHHHHHHHHHHHHhhhcCCChhhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCcc
Q psy17882 62 ----GKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPA 137 (181)
Q Consensus 62 ----~~~~~~~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~~pd~~~l~~~~~i~~~~~~~~~~L~~~~~~~~~~~~~ 137 (181)
.........++.+.+++.+|+++++|.+||+||||++|||||++|+++..+|+++|++|..+|.+|+..++|+++.
T Consensus 143 ~~~~~~~~~~~~~i~~l~~~~~~l~~L~ld~~E~~lLkAivL~npd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~ 222 (268)
T 3f5c_B 143 VSAEAGHLLPAAAVQAIKSFFFKCWSLNIDTKEYAYLKGTVLFNPDLPGLQCVKYIEGLQWRTQQILTEHIRMMQREYQI 222 (268)
T ss_dssp ------CCCCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHSSCSSH
T ss_pred ccchhccccHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHCCChHH
Confidence 0111123456888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhhhhhccchhhHHHHhhccccCCccHHHHHHHHhc
Q psy17882 138 RFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180 (181)
Q Consensus 138 r~~~Ll~~l~~lr~~~~~~~e~l~~~~~~~~~~~~~ll~e~l~ 180 (181)
||++||+++|.||+++.++.|.+++.+++|.+++++++.||++
T Consensus 223 Rf~~LL~~Lp~LR~i~~~~~e~l~~~k~~g~~~i~~Ll~Eml~ 265 (268)
T 3f5c_B 223 RSAELNSALFLLRFINSDVVTELFFRPIIGAVSMDDMMLEMLC 265 (268)
T ss_dssp HHHHHHHHHHHHTTSCSSHHHHHHTHHHHCSCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCchHHHHHHHh
Confidence 9999999999999999999999999999999999999999986
No 16
>3cjw_A COUP transcription factor 2; COUP-TFII, nuclear receptor, ligand binding domain, orphan receptor, three-layered helical sandwich, DNA-binding; 1.48A {Homo sapiens}
Probab=100.00 E-value=1.3e-41 Score=252.05 Aligned_cols=179 Identities=40% Similarity=0.703 Sum_probs=151.4
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCCcccccCC-CCCccchHHHHHHHHHHHHH
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP-NGKASQTAADVRVLNGVLQR 80 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 80 (181)
+|+|||++|+|.+|+.+||+.|+|++|.++++++.|+++.+. +.+.+.+++|...... ........+.++.+.+++.+
T Consensus 53 ~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~-~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (244)
T 3cjw_A 53 AVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPL-HVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEK 131 (244)
T ss_dssp HHHHHHHSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHHTCCC-SCCC-----------------CCCSHHHHHHHHHHHH
T ss_pred HHhHHHhCCChhcCCHHHHHHHHHHHHHHHHHHHHHHHhccc-cccccccccccccCccchhhhHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999876 3344555554332111 01111222345778899999
Q ss_pred hhhcCCChhhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHHhhhhhhhccchhhHHHH
Q psy17882 81 FRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHI 160 (181)
Q Consensus 81 l~~l~l~~~E~~ll~ai~l~~pd~~~l~~~~~i~~~~~~~~~~L~~~~~~~~~~~~~r~~~Ll~~l~~lr~~~~~~~e~l 160 (181)
|+++++|.+||+||||++|||||++|+++...|+++|++|..+|.+||..++|+++.||++||+++|+||+++.++.|++
T Consensus 132 ~~~L~ld~~E~~lLkaivL~~pd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~Rf~~LLl~L~~Lr~l~~~~~e~l 211 (244)
T 3cjw_A 132 LKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQL 211 (244)
T ss_dssp HHHTTCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTTHHHHHHSCHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhHHHHhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCCccHHHHHHHHhcC
Q psy17882 161 FFAKTVANTSMEKLLCDMYKN 181 (181)
Q Consensus 161 ~~~~~~~~~~~~~ll~e~l~~ 181 (181)
++.+++|.+++++++.||+++
T Consensus 212 ~~~~~~~~~~~~~Ll~eml~~ 232 (244)
T 3cjw_A 212 FFVRLVGKTPIETLIRDMLLS 232 (244)
T ss_dssp HTHHHHTTCCGGGTHHHHHTC
T ss_pred HhhcccCCCcHHHHHHHHHhC
Confidence 999999999999999999974
No 17
>1xdk_B RAR-beta, retinoic acid receptor, beta; nuclear receptor, coactivator, ligand, hormone/growth factor receptor complex; HET: REA; 2.90A {Mus musculus} SCOP: a.123.1.1
Probab=100.00 E-value=4.1e-42 Score=261.68 Aligned_cols=178 Identities=20% Similarity=0.315 Sum_probs=161.4
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCCcccccCCCCCccchHHHHHHHHHHHHHh
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNGKASQTAADVRVLNGVLQRF 81 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (181)
+|+|||++|+|.+|+.+||+.|+|++|.++++++.|+++.+. .+.+.+++|..++++.....+.....+.+.+++.+|
T Consensus 87 ~VewaK~iP~F~~L~~~DQi~LLk~~~~el~lL~~a~~s~~~--~~~l~~~~g~~~~~~~~~~~g~~~~~~~i~~~~~~l 164 (303)
T 1xdk_B 87 IVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPE--QDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQL 164 (303)
T ss_dssp HHHHHHTSTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTEETT--TTEEECTTCBEEEHHHHHHTTTGGGHHHHHHHHHHH
T ss_pred HHHHHHcCcccccCCHHHHHHHHHhhHHHHHHHHHHHHhccc--CCeEEecCCceecHHHHhhcCcHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999875 357888888766543222223334567788999999
Q ss_pred hhcCCChhhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHHhhhhhhhccchhhHHHHh
Q psy17882 82 RLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIF 161 (181)
Q Consensus 82 ~~l~l~~~E~~ll~ai~l~~pd~~~l~~~~~i~~~~~~~~~~L~~~~~~~~~~~~~r~~~Ll~~l~~lr~~~~~~~e~l~ 161 (181)
+++++|.+||+||+|++|||||++|+++...|+++|++|..+|.+||..++|+++.||++||++||.||.++..+.|.++
T Consensus 165 ~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~L~~Lr~l~~~~~e~l~ 244 (303)
T 1xdk_B 165 LPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVI 244 (303)
T ss_dssp GGGCCCHHHHHHHHHHHHSCSCSSSCSSHHHHHHHTHHHHHHHHHHHHHHCTTCTTHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCCccHHHHHHHHhcC
Q psy17882 162 FAKTVANTSMEKLLCDMYKN 181 (181)
Q Consensus 162 ~~~~~~~~~~~~ll~e~l~~ 181 (181)
+.+++|.+++++|+.||+++
T Consensus 245 ~~~~~~~~~~~~Ll~Eml~~ 264 (303)
T 1xdk_B 245 TLKMEIPGSMPPLIQEMLEN 264 (303)
T ss_dssp HHTTTCSSCCCHHHHHHHCC
T ss_pred HHHhcCCCCccHHHHHHHcC
Confidence 99999999999999999964
No 18
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens}
Probab=100.00 E-value=7.1e-42 Score=263.87 Aligned_cols=180 Identities=24% Similarity=0.405 Sum_probs=145.8
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCCcccccCCCCC-ccch--HHHHHHHHHHH
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNGK-ASQT--AADVRVLNGVL 78 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~ 78 (181)
+|+|||++|+|.+|+.+||+.|+|++|.++++++.|+++......+.+.+.+|..++..... ..+. ...++.+.+++
T Consensus 167 ~VewAK~iP~F~~L~~~DQi~LLk~~w~ElllL~~a~rs~~~~~~~~ll~~~G~~i~~~~~~~~~g~~~~~l~~~l~~l~ 246 (352)
T 3tx7_B 167 IVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELV 246 (352)
T ss_dssp HHHHTCCC----------CHHHHHHHHHHHHHHHHHHHHHHTCCSSCCBCTTCCBCCHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcChhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCCcccHHHHHHhccccHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999876544456777777665542211 1122 45678889999
Q ss_pred HHhhhcCCChhhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHHhhhhhhhccchhhHH
Q psy17882 79 QRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQ 158 (181)
Q Consensus 79 ~~l~~l~l~~~E~~ll~ai~l~~pd~~~l~~~~~i~~~~~~~~~~L~~~~~~~~~~~~~r~~~Ll~~l~~lr~~~~~~~e 158 (181)
.+|+++++|.+||+|||||+|||||++|+++..+|+++|+++..+|.+||..++++++.||++||++||.||.++.++.|
T Consensus 247 ~~l~~L~ld~~EyalLkAIvLfnpd~~gLs~~~~Ve~lQe~~~~aL~~y~~~~~p~~~~RF~kLLllLp~LR~ls~~~~e 326 (352)
T 3tx7_B 247 AKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEE 326 (352)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHSCSCC------CHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccCCccHHHHHHHHhcC
Q psy17882 159 HIFFAKTVANTSMEKLLCDMYKN 181 (181)
Q Consensus 159 ~l~~~~~~~~~~~~~ll~e~l~~ 181 (181)
.+++++++|.+++++|+.||++.
T Consensus 327 ~L~~~kl~g~~~i~~LL~EMl~a 349 (352)
T 3tx7_B 327 YLYYKHLNGDVPYNNLLIEMLHA 349 (352)
T ss_dssp HHHHHHTTTCSCSSCHHHHHHHC
T ss_pred HHHHhhhcCCCCccHHHHHHHhc
Confidence 99999999999999999999974
No 19
>1nq7_A Nuclear receptor ROR-beta; ligand-binding domain, retinoids, retinoic acid, synthetic ligand, antagonist, transcription; HET: ARL; 1.50A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1k4w_A* 1n4h_A*
Probab=100.00 E-value=9.4e-42 Score=252.61 Aligned_cols=175 Identities=17% Similarity=0.216 Sum_probs=158.3
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCCcccccCCCCCccchHHHHHHHHHHHHHh
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNGKASQTAADVRVLNGVLQRF 81 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (181)
+|+|||++|+|.+|+.+||+.|+|++|.++++++.|+++.+. .+.+.+ +|..++.+.....+.....+.+.+++.+|
T Consensus 66 ~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~l~~a~~~~~~--~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~~l 142 (244)
T 1nq7_A 66 VVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPL--NNTVLF-EGKYGGMQMFKALGSDDLVNEAFDFAKNL 142 (244)
T ss_dssp HHHHHHTCHHHHTSCHHHHHHHHHHHHHHHHHHHHGGGEETT--TTEEEE-TTEEEEGGGGGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccCCHHHHHHHHHHhHHHHHHHHHHHHhcCC--CCEEeE-CCEEecHHHHhhcChHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999988654 335666 66666654444445567788889999999
Q ss_pred hhcCCChhhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHHhhhhhhhccchhhHHHHh
Q psy17882 82 RLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIF 161 (181)
Q Consensus 82 ~~l~l~~~E~~ll~ai~l~~pd~~~l~~~~~i~~~~~~~~~~L~~~~~~~~~~~~~r~~~Ll~~l~~lr~~~~~~~e~l~ 161 (181)
+++++|++||+||||++|||||++|+++...|+++|++|..+|.+||..+||+++ ||++||.++|.||+++..+.|.++
T Consensus 143 ~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~-Rf~~LL~~L~~Lr~l~~~~~e~l~ 221 (244)
T 1nq7_A 143 CSLQLTEEEIALFSSAVLISPDRAWLLEPRKVQKLQEKIYFALQHVIQKNHLDDE-TLAKLIAKIPTITAVCNLHGEKLQ 221 (244)
T ss_dssp HTTCCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCSCTT-HHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999888 999999999999999999999999
Q ss_pred hccccCCc----cHHHHHHHHhc
Q psy17882 162 FAKTVANT----SMEKLLCDMYK 180 (181)
Q Consensus 162 ~~~~~~~~----~~~~ll~e~l~ 180 (181)
+.+..|+. ++++|+.||+.
T Consensus 222 ~~~~~~~~~~~~~~~~Ll~Em~~ 244 (244)
T 1nq7_A 222 VFKQSHPDIVNTLFPPLYKELFN 244 (244)
T ss_dssp HHHHHCHHHHHHTSCHHHHHHHC
T ss_pred HHHhhCcccccCCCChHHHHhhC
Confidence 99999876 89999999984
No 20
>3oll_A Estrogen receptor beta; steroid binding, phosphorylation, hormone receptor-activator; HET: PTR EST; 1.50A {Homo sapiens} SCOP: a.123.1.1 PDB: 1u3s_A* 1u3q_A* 1x78_A* 1x7b_A* 1x7j_A* 1x76_A* 2yjd_A* 3ols_A* 3omo_A* 3omp_A* 3omq_A* 1u3r_A* 1u9e_A* 1qkm_A* 2giu_A* 1nde_A* 2jj3_A* 2i0g_A* 2qtu_A* 2z4b_A* ...
Probab=100.00 E-value=1.7e-41 Score=250.83 Aligned_cols=177 Identities=25% Similarity=0.399 Sum_probs=158.2
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCCcccccCCCCC-ccchHHHHHHHHHHHHH
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNGK-ASQTAADVRVLNGVLQR 80 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 80 (181)
+|+|||++|+|.+|+.+||+.|+|++|.++++++.|+++.+.+ +.+.+++|..+++.... ..+.....+.+.+++.+
T Consensus 49 ~vewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~~--~~l~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (240)
T 3oll_A 49 MISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHP--GKLIFAPDLVLDRDEGKCVEGILEIFDMLLATTSR 126 (240)
T ss_dssp HHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHTTST--TEEEEETBEEEEGGGGGGSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcCcccCCHHHHHHHHHHHHHHHHHHHHHHHccCCC--CeeEecCCcccchhhHHHHhhHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999998753 47888888776654322 23445667788899999
Q ss_pred hhhcCCChhhhhhhhhhhhccCCCCCCCC-------HHHHHHHHHHHHHHHHHHHhhcC---CCCcchHHHHHhhhhhhh
Q psy17882 81 FRLVGVDPAEFACLKAVVLFKSETRGLKD-------SLQVENLQDQAQVMLAQHVRTHH---PAQPARFGRLLLMTSQCR 150 (181)
Q Consensus 81 l~~l~l~~~E~~ll~ai~l~~pd~~~l~~-------~~~i~~~~~~~~~~L~~~~~~~~---~~~~~r~~~Ll~~l~~lr 150 (181)
++++++|.+||+||||+++||||++|+++ .++|+++|++|..+|.+||..++ |+++.||++||.++|.||
T Consensus 127 l~~L~ld~~E~~lLkAivL~~pd~~gLs~~~~~~~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~~~~Rf~~LL~~Lp~Lr 206 (240)
T 3oll_A 127 FRELKLQHKEYLCVKAMILLNSSMYPLVTATQDADSSRKLAHLLNAVTDALVWVIAKSGISSQQQSMRLANLLMLLSHVR 206 (240)
T ss_dssp HHHTTCCHHHHHHHHHHHHHCSCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHhHHHH
Confidence 99999999999999999999999999864 37899999999999999998763 578899999999999999
Q ss_pred ccchhhHHHHhhccccCCccHHHHHHHHhc
Q psy17882 151 NIPSARVQHIFFAKTVANTSMEKLLCDMYK 180 (181)
Q Consensus 151 ~~~~~~~e~l~~~~~~~~~~~~~ll~e~l~ 180 (181)
+++.++.|.+++.+++|.+|+++++.||++
T Consensus 207 ~l~~~~~e~l~~~~~~g~~~~~~Ll~eml~ 236 (240)
T 3oll_A 207 HASNKGMEHLLNMKCKNVVPVYDLLLEMLN 236 (240)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHh
Confidence 999999999999999999999999999986
No 21
>1hg4_A Ultraspiracle; nuclear hormone receptor, transcription factor, ligand binding; HET: LPP; 2.4A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=100.00 E-value=6.7e-41 Score=252.65 Aligned_cols=180 Identities=27% Similarity=0.502 Sum_probs=148.7
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCC------ccccCCcccccC----------------
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESS------PLFNASEHVAAV---------------- 59 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~------~~~~~~~~~~~~---------------- 59 (181)
+|+|||++|+|.+|+.+||+.|+|++|.++++++.||++.+..+.. .+.+++|...++
T Consensus 63 ~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~~~~~~~~~~~~~~~dGs~~~~~~~~~~~~~~~~~~~~ 142 (279)
T 1hg4_A 63 MVEYARMMPHFAQVPLDDQVILLKAAWIELLIANVAWCSIVSLDDGGAGGGGGGLGHDGSFERRSPGLQPQQLFLNQSFS 142 (279)
T ss_dssp HHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHTTTTC-------------------------CCCEEESSSSCE
T ss_pred HHHHHhcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccccccccccccCccccccccccccceeeecCCcc
Confidence 6899999999999999999999999999999999999988753321 234444432221
Q ss_pred ---CCCCccchHHH-HHHHHHHHHHhhhcCCChhhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy17882 60 ---PNGKASQTAAD-VRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQ 135 (181)
Q Consensus 60 ---~~~~~~~~~~~-~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~~pd~~~l~~~~~i~~~~~~~~~~L~~~~~~~~~~~ 135 (181)
......+.... .+.+.+++.+|+++++|.+||+||||++|||||++|+++...|+++|++|..+|.+||..+||++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ld~~E~~lLkAivL~npd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~p~~ 222 (279)
T 1hg4_A 143 YHRNSAIKAGVSAIFDRILSELSVKMKRLNLDRRELSCLKAIILYNPDIRGIKSRAEIEMCREKVYACLDEHCRLEHPGD 222 (279)
T ss_dssp EEHHHHHHHTCHHHHHHHHHHTHHHHHHHTCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred cchhhHhhcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCh
Confidence 00000112222 34567899999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHhhhhhhhccchhhHHHHhhccccCCccHHHHHHHHhcC
Q psy17882 136 PARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYKN 181 (181)
Q Consensus 136 ~~r~~~Ll~~l~~lr~~~~~~~e~l~~~~~~~~~~~~~ll~e~l~~ 181 (181)
+.||++||.++|.||+++..+.|.+++.+++|.+++++++.||+++
T Consensus 223 ~~Rf~~LL~~L~~Lr~~~~~~~e~l~~~~~~g~~~~~~Ll~Eml~~ 268 (279)
T 1hg4_A 223 DGRFAQLLLRLPALRSISLKCQDHLFLFRITSDRPLEELFLEQLEA 268 (279)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTCBCSSCHHHHHHHHHTS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999864
No 22
>1l2j_A Estrogen receptor beta; nuclear receptor, transcription factor, antagonist transcription receptor; HET: ETC; 2.95A {Homo sapiens} SCOP: a.123.1.1
Probab=100.00 E-value=4.9e-41 Score=252.09 Aligned_cols=177 Identities=25% Similarity=0.402 Sum_probs=154.7
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCCcccccCCCCC-ccchHHHHHHHHHHHHH
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNGK-ASQTAADVRVLNGVLQR 80 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 80 (181)
+|+|||++|+|.+|+.+||+.|+|++|.++++++.|+++.+.. +.+++++|..++++... ..+.....+.+.+++.+
T Consensus 75 ~VewAK~lP~F~~L~~~DQi~LLk~~w~el~iL~~a~rs~~~~--~~l~~~~g~~~~~~~~~~~~g~~~~~~~l~~~~~~ 152 (271)
T 1l2j_A 75 MISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHP--GKLIFAPDLVLDRDEGKCVEGILEIFDMLLATTSR 152 (271)
T ss_dssp HHHHHHTSTTGGGSCHHHHHHHHHTTHHHHHHHHHHHHTSSST--TEECSSSSCCEETGGGGGSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHhhccC--CeeeecCCccccchhhhhhccHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999998763 57888888777654322 23445667788899999
Q ss_pred hhhcCCChhhhhhhhhhhhccCCCCCCCC-------HHHHHHHHHHHHHHHHHHHhhc---CCCCcchHHHHHhhhhhhh
Q psy17882 81 FRLVGVDPAEFACLKAVVLFKSETRGLKD-------SLQVENLQDQAQVMLAQHVRTH---HPAQPARFGRLLLMTSQCR 150 (181)
Q Consensus 81 l~~l~l~~~E~~ll~ai~l~~pd~~~l~~-------~~~i~~~~~~~~~~L~~~~~~~---~~~~~~r~~~Ll~~l~~lr 150 (181)
|+++++|.+||+||||++|||||++|+++ .++|+++|++|..+|..||..+ +++++.||++||+++|.||
T Consensus 153 l~~L~ld~~E~~lLkAIvLfnpd~~gLs~~~~~~~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~~~~Rf~~LLl~Lp~Lr 232 (271)
T 1l2j_A 153 FRELKLQHKEYLCVKAMILLNSSMYPLVTATQDADSSRKLAHLLNAVTDALVWVIAKSGISSQQQSMRLANLLMLLSHVR 232 (271)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHC----CCCCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHcCCCcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999875 3688999999999999999876 3578899999999999999
Q ss_pred ccchhhHHHHhhccccCCccHHHHHHHHhc
Q psy17882 151 NIPSARVQHIFFAKTVANTSMEKLLCDMYK 180 (181)
Q Consensus 151 ~~~~~~~e~l~~~~~~~~~~~~~ll~e~l~ 180 (181)
.++.++.|.+++++++|.+++++|+.||++
T Consensus 233 ~i~~~~~e~l~~~~~~g~~~~~~Ll~Eml~ 262 (271)
T 1l2j_A 233 HASNKGMEHLLNMKCKNVVPVYDLLLEMLN 262 (271)
T ss_dssp HHHHHHHHHHTTCCTTSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCChHHHHHHHHc
Confidence 999999999999999999999999999986
No 23
>3b0t_A Vitamin D3 receptor; nuclear receptor, transcription, gene regulation; HET: MCZ; 1.30A {Homo sapiens} PDB: 3a40_X* 1s0z_A* 1s19_A* 2ham_A* 2har_A* 2has_A* 1txi_A* 2hb8_A* 2hb7_A* 3a3z_X* 3a78_A* 3auq_A* 3aur_A* 3ax8_A* 3cs4_A* 3cs6_A* 1ie9_A* 1db1_A* 1ie8_A* 3kpz_A* ...
Probab=100.00 E-value=2e-41 Score=252.42 Aligned_cols=177 Identities=17% Similarity=0.260 Sum_probs=154.7
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCC-cccccCCCC-CccchHHHHHHHHHHHH
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNAS-EHVAAVPNG-KASQTAADVRVLNGVLQ 79 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~ 79 (181)
+|+|||++|+|.+|+.+||+.|+|++|.++++++.|+++.+. .+.+.+++ |..+..... ..+......+.+.+++.
T Consensus 72 ~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~~l~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 149 (254)
T 3b0t_A 72 VIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSNESFTMD--DMSWTCGNQDYKYRVSDVTKAGHSLELIEPLIKFQV 149 (254)
T ss_dssp HHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHGGGTEETT--TTEEECSSGGGEECHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHhhCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHhccC--CCeEEecCCCeeeeHHHHHHcCCcHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999987653 33555654 443332211 11222367788899999
Q ss_pred HhhhcCCChhhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCC--CCcchHHHHHhhhhhhhccchhhH
Q psy17882 80 RFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHP--AQPARFGRLLLMTSQCRNIPSARV 157 (181)
Q Consensus 80 ~l~~l~l~~~E~~ll~ai~l~~pd~~~l~~~~~i~~~~~~~~~~L~~~~~~~~~--~~~~r~~~Ll~~l~~lr~~~~~~~ 157 (181)
+|+++++|.+||+||||++|||||++|+++...|+++|++|..+|.+||..+|| +++.||++||.++|.||.++.++.
T Consensus 150 ~l~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~~Rf~~LL~~L~~Lr~l~~~~~ 229 (254)
T 3b0t_A 150 GLKKLNLHEEEHVLLMAICIVSPDRPGVQDAALIEAIQDRLSNTLQTYIRCRHPPPGSHLLYAKMIQKLADLRSLNEEHS 229 (254)
T ss_dssp HHHTTCCCHHHHHHHHHHHHSCSCSTTCSCHHHHHHHHHHHHHHHHHHHHHHCCTTTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHhCCCccCCcCHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998 899999999999999999999999
Q ss_pred HHHhhccc--cCCccHHHHHHHHhc
Q psy17882 158 QHIFFAKT--VANTSMEKLLCDMYK 180 (181)
Q Consensus 158 e~l~~~~~--~~~~~~~~ll~e~l~ 180 (181)
|.+++.++ .|.+++++|+.||+.
T Consensus 230 e~l~~~~~~~~~~~~~~~Ll~Em~~ 254 (254)
T 3b0t_A 230 KQYRCLSFQPECSMKLTPLVLEVFG 254 (254)
T ss_dssp HHHHHHTTSTTHHHHSCHHHHHHHC
T ss_pred HHHHHHhccccCCCCCChHHHHhcC
Confidence 99999998 677889999999984
No 24
>1pdu_A DHR38, nuclear hormone receptor HR38; nuclear receptor, ligand-binding domain, hormone/growth factor receptor complex; 2.30A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=100.00 E-value=2.2e-41 Score=250.37 Aligned_cols=176 Identities=23% Similarity=0.303 Sum_probs=157.1
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCCcccccCCCCCccchHHHHHHHHHHHHHh
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNGKASQTAADVRVLNGVLQRF 81 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (181)
+|+|||++|+|.+|+.+||+.|+|++|.++++++.|+++.+ ..+.+++++|..+++.... .+.....+.+.+++.+|
T Consensus 63 ~VewAK~lP~F~~L~~~DQi~LLk~~~~el~lL~~a~rs~~--~~~~l~~~~g~~~~~~~~~-~~~~~~~~~l~~~~~~l 139 (244)
T 1pdu_A 63 IKQFAEKIPGYFDLLPEDQELLFQSASLELFVLRLAYRARI--DDTKLIFCNGTVLHRTQCL-RSFGEWLNDIMEFSRSL 139 (244)
T ss_dssp HHHHHTTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHCCS--SCSEEECTTSBEEEHHHHH-HHHTTHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCceEeeCCeeecHHHHH-hHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999875 3457788887766542111 12234567788999999
Q ss_pred hhcCCChhhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCC--CCcchHHHHHhhhhhhhccchhhHHH
Q psy17882 82 RLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHP--AQPARFGRLLLMTSQCRNIPSARVQH 159 (181)
Q Consensus 82 ~~l~l~~~E~~ll~ai~l~~pd~~~l~~~~~i~~~~~~~~~~L~~~~~~~~~--~~~~r~~~Ll~~l~~lr~~~~~~~e~ 159 (181)
+++++|++||+||||++||| |++|+++...|+++|++|..+|.+||..++| +++.||++||.++|+||.++.++.|.
T Consensus 140 ~~L~ld~~E~~lLkAIvLfn-d~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~~~Rf~~LL~~L~~Lr~l~~~~~e~ 218 (244)
T 1pdu_A 140 HNLEIDISAFACLCALTLIT-ERHGLREPKKVEQLQMKIIGSLRDHVTYNAEAQKKQHYFSRLLGKLPELRSLSVQGLQR 218 (244)
T ss_dssp HHHCCCHHHHHHHHHHHHSS-CCTTCSCHHHHHHHHHHHHHHHHHHHHHCHHHHTSTTHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhC-CCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998 8999999999999999999999999998876 68899999999999999999999999
Q ss_pred HhhccccCCccHHHHHHHHhcC
Q psy17882 160 IFFAKTVANTSMEKLLCDMYKN 181 (181)
Q Consensus 160 l~~~~~~~~~~~~~ll~e~l~~ 181 (181)
+++.+++|.+++++|+.||+.+
T Consensus 219 l~~~~~~g~~~~~~Ll~Eml~~ 240 (244)
T 1pdu_A 219 IFYLKLEDLVPAPALIENMFVT 240 (244)
T ss_dssp HHHHHHHCSSCCCHHHHHTTTC
T ss_pred HHHHccCCCCCchHHHHHHHhC
Confidence 9999999999999999999874
No 25
>2p1t_A Retinoic acid receptor RXR-alpha; protein-ligand complex, hormone receptor; HET: 3TN; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 1mvc_A* 1mzn_A* 1mv9_A* 2p1u_A* 2p1v_A* 2zxz_A* 2zy0_A* 3fug_A* 3nsp_A 3nsq_A* 3r29_A 3r2a_A* 3r5m_A* 3e94_A* 3kwy_A* 1fby_A* 3uvv_B* 3fc6_A* 1rdt_A* 3fal_A* ...
Probab=100.00 E-value=1.1e-40 Score=246.49 Aligned_cols=178 Identities=31% Similarity=0.589 Sum_probs=157.5
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCCcccccCCCCCccchHHHH-HHHHHHHHH
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNGKASQTAADV-RVLNGVLQR 80 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 80 (181)
+|+|||++|+|.+|+.+||+.|+|++|.++++++.|+++.+..+ .+.+++|..++.+.....+..... +.+.+++.+
T Consensus 57 ~vewak~ip~F~~L~~~DQ~~LLk~~w~e~~il~~a~rs~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (240)
T 2p1t_A 57 LVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKD--GILLATGLHVHRNSAHSAGVGAIFDRVLTELVSK 134 (240)
T ss_dssp HHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHTTTSSS--EEECTTSCEEEHHHHHTTTCHHHHHHHHHHTHHH
T ss_pred HHHHHHhCcChhcCCHHHHHHHHHHHHHHHHHHHHHHhhccCCC--ceEecCCcccccchhhhhchHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999877533 455677765544322222223333 456789999
Q ss_pred hhhcCCChhhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHHhhhhhhhccchhhHHHH
Q psy17882 81 FRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHI 160 (181)
Q Consensus 81 l~~l~l~~~E~~ll~ai~l~~pd~~~l~~~~~i~~~~~~~~~~L~~~~~~~~~~~~~r~~~Ll~~l~~lr~~~~~~~e~l 160 (181)
|+++++|.+||+||+|+++||||++|+++..+|+++|+++..+|++|+..++|+++.||++||.++|.||.++.++.|++
T Consensus 135 l~~L~ld~~E~~~Lkai~l~~pd~~gl~~~~~ve~~q~~~~~~L~~y~~~~~~~~~~Rf~~LL~~l~~Lr~~~~~~~e~l 214 (240)
T 2p1t_A 135 MRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHL 214 (240)
T ss_dssp HHHTTCCHHHHHHHHHHHHSCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHhhCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCCccHHHHHHHHhcC
Q psy17882 161 FFAKTVANTSMEKLLCDMYKN 181 (181)
Q Consensus 161 ~~~~~~~~~~~~~ll~e~l~~ 181 (181)
++.+++|.+++++++.||+++
T Consensus 215 ~~~~~~~~~~~~~ll~eml~~ 235 (240)
T 2p1t_A 215 FFFKLIGDTPIDTFLMEMLEA 235 (240)
T ss_dssp HHHHHHCCSCCCHHHHHHTSC
T ss_pred HHhCcCCCCchHHHHHHHHcC
Confidence 999999999999999999974
No 26
>1yye_A ER-beta, estrogen receptor beta; ER-beta, nuclear receptor, transcription factor, agonist; HET: 196; 2.03A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yy4_A*
Probab=100.00 E-value=5.3e-41 Score=251.54 Aligned_cols=177 Identities=25% Similarity=0.399 Sum_probs=154.9
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCCcccccCCCCC-ccchHHHHHHHHHHHHH
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNGK-ASQTAADVRVLNGVLQR 80 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 80 (181)
+|+|||++|+|.+|+.+||+.|+|++|.++++++.|+++.+.. +.+.+++|..+++.... ..+.....+.+.+++.+
T Consensus 47 ~VewAK~lp~F~~L~~~DQi~LLk~~w~el~lL~~a~rs~~~~--~~l~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~ 124 (268)
T 1yye_A 47 MISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHP--GKLIFAPDLVLDRDEGKCVEGILEIFDMLLATTSR 124 (268)
T ss_dssp HHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHTTST--TEEEEETTEEEEGGGGGGSTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcchhcCCHHHHHHHHHHHHHHHHHHHHHHHhccCC--CceEecCCcccChhhHhhhccHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999998763 47788888776654322 23445667788899999
Q ss_pred hhhcCCChhhhhhhhhhhhccCCCCCCCC-------HHHHHHHHHHHHHHHHHHHhhcC---CCCcchHHHHHhhhhhhh
Q psy17882 81 FRLVGVDPAEFACLKAVVLFKSETRGLKD-------SLQVENLQDQAQVMLAQHVRTHH---PAQPARFGRLLLMTSQCR 150 (181)
Q Consensus 81 l~~l~l~~~E~~ll~ai~l~~pd~~~l~~-------~~~i~~~~~~~~~~L~~~~~~~~---~~~~~r~~~Ll~~l~~lr 150 (181)
|+++++|.+||+||||++|||||++|+++ .++|+++|++|..+|.+||..++ ++++.||++||+++|.||
T Consensus 125 l~~L~ld~~E~~lLkAIvLfnpd~~gLs~~~~~~~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~~~~Rf~~LLl~Lp~Lr 204 (268)
T 1yye_A 125 FRELKLQHKEYLCVKAMILLNSSMYPLVTATQDADSSRKLAHLLNAVTDALVWVIAKSGISSQQQSMRLANLLMLLSHVR 204 (268)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTCCC----------CCHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHcCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999864 68999999999999999998764 578899999999999999
Q ss_pred ccchhhHHHHhhccccCCccHHHHHHHHhc
Q psy17882 151 NIPSARVQHIFFAKTVANTSMEKLLCDMYK 180 (181)
Q Consensus 151 ~~~~~~~e~l~~~~~~~~~~~~~ll~e~l~ 180 (181)
+++.++.|++++.+++|.+++++|+.||++
T Consensus 205 ~i~~~~~e~l~~~~~~g~~~~~~Ll~Eml~ 234 (268)
T 1yye_A 205 HASNKGMEHLLNMKCKNVVPVYDLLLEMLN 234 (268)
T ss_dssp HHHHHHHHHHHHHHHTTCSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHh
Confidence 999999999999999999999999999986
No 27
>1xpc_A Estrogen receptor; nuclear receptor, transcription factor, ER-alpha, antagonist hormone-growth factor receptor complex; HET: AIT; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1sj0_A* 1xp1_A* 1xp9_A* 1xp6_A* 1yim_A* 1yin_A* 3ert_A* 1r5k_A* 3erd_A* 1l2i_A* 2iok_A* 1a52_A* 2ouz_A* 1ere_A* 1err_A* 2qxs_A* 3q95_A* 3q97_A* 2b1z_A* 1zky_A* ...
Probab=100.00 E-value=2e-41 Score=251.53 Aligned_cols=178 Identities=24% Similarity=0.426 Sum_probs=157.4
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCCcccccCCCC-CccchHHHHHHHHHHHHH
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG-KASQTAADVRVLNGVLQR 80 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 80 (181)
+|+|||++|+|.+|+.+||+.|+|++|.++++++.|+++.+.. +.+.+++|..+++... ...+.....+.+.+++.+
T Consensus 51 ~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~~--~~l~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~ 128 (248)
T 1xpc_A 51 MINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHP--GKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSR 128 (248)
T ss_dssp HHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHTTST--TEEEEETTEEEEHHHHTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCccccCCHHHHHHHHHHHhHHHHHHHHHHHhcccc--CceeecCCceeCccchhhhccHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999998753 4778888876655322 223445666788899999
Q ss_pred hhhcCCChhhhhhhhhhhhccCCCCCC--------CCHHHHHHHHHHHHHHHHHHHhhcC---CCCcchHHHHHhhhhhh
Q psy17882 81 FRLVGVDPAEFACLKAVVLFKSETRGL--------KDSLQVENLQDQAQVMLAQHVRTHH---PAQPARFGRLLLMTSQC 149 (181)
Q Consensus 81 l~~l~l~~~E~~ll~ai~l~~pd~~~l--------~~~~~i~~~~~~~~~~L~~~~~~~~---~~~~~r~~~Ll~~l~~l 149 (181)
|+++++|.+||+||||++|||||++++ ++..+|+++|++|..+|.+||..++ ++++.||++||.++|.|
T Consensus 129 l~~L~ld~~E~~lLkAivL~~pd~~~ls~~~~~gl~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~~~Rf~~LL~~L~~L 208 (248)
T 1xpc_A 129 FRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHI 208 (248)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHTTTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHcCCcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCCCCcchhhHHHHHHHHHHHH
Confidence 999999999999999999999999655 4468899999999999999999765 47889999999999999
Q ss_pred hccchhhHHHHhhccccCCccHHHHHHHHhcC
Q psy17882 150 RNIPSARVQHIFFAKTVANTSMEKLLCDMYKN 181 (181)
Q Consensus 150 r~~~~~~~e~l~~~~~~~~~~~~~ll~e~l~~ 181 (181)
|+++.++.|.+++.+++|.+++++|+.||+++
T Consensus 209 r~~~~~~~e~l~~~~~~~~~~~~~Ll~eml~~ 240 (248)
T 1xpc_A 209 RHMSNKGMEHLYSMKCKNVVPLYDLLLEMLDA 240 (248)
T ss_dssp HHHHHHHHHHHTTSSSCCSSCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 99999999999999999999999999999864
No 28
>2r40_D Ecdysone receptor, 20-hydroxy-ecdysone receptor; nuclear receptor ligand-binding domain, anti-parallel alpha- sandwich, ecdysone receptor, ECR, gene regulation; HET: FLC 20E EPH; 2.40A {Heliothis virescens} SCOP: a.123.1.1 PDB: 1r1k_D* 3ixp_D* 1r20_D*
Probab=100.00 E-value=6.4e-41 Score=250.91 Aligned_cols=176 Identities=22% Similarity=0.291 Sum_probs=158.4
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCCcccccCCCCCccchHHHHHHHHHHHHHh
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNGKASQTAADVRVLNGVLQRF 81 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (181)
+|+|||++|+|.+|+.+||+.|+|++|.++++++.|+++.+. .+.+.+++|..++++.....+.....+.+.+++.+|
T Consensus 84 ~VewaK~lp~F~~L~~~DQi~LLk~~~~el~~L~~a~~~~~~--~~~l~~~~g~~~~~~~~~~~g~~~~~~~l~~~~~~l 161 (266)
T 2r40_D 84 IVEFAKGLPGFAKISQSDQITLLKACSSEVMMLRVARRYDAA--TDSVLFANNQAYTRDNYRKAGMAYVIEDLLHFCRCM 161 (266)
T ss_dssp HHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHTTEETT--TTEEECTTSCEECHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCeEEecCCceecHHHHhhcCHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999997654 346778887766553322234456778889999999
Q ss_pred hhcCCChhhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcC---CCCcchHHHHHhhhhhhhccchhhHH
Q psy17882 82 RLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHH---PAQPARFGRLLLMTSQCRNIPSARVQ 158 (181)
Q Consensus 82 ~~l~l~~~E~~ll~ai~l~~pd~~~l~~~~~i~~~~~~~~~~L~~~~~~~~---~~~~~r~~~Ll~~l~~lr~~~~~~~e 158 (181)
+++++|.+||+||||++||| |++|+++..+|+++|++|..+|++||..+| |+++.||++||.++|.||.++.++.|
T Consensus 162 ~~L~ld~~E~~lLkAivL~n-d~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~~~Rf~~LL~~L~~Lr~l~~~~~e 240 (266)
T 2r40_D 162 YSMMMDNVHYALLTAIVIFS-DRPGLEQPLLVEEIQRYYLNTLRVYILNQNSASPRCAVIFGKILGILTEIRTLGMQNSN 240 (266)
T ss_dssp HTTTCCHHHHHHHHHHHHTS-CCTTCSCHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCCHHHHHHHhhheeec-CCCCCcCHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 999999999999999999999999999988 78889999999999999999999999
Q ss_pred HHhhccccCCccHHHHHHHHhcC
Q psy17882 159 HIFFAKTVANTSMEKLLCDMYKN 181 (181)
Q Consensus 159 ~l~~~~~~~~~~~~~ll~e~l~~ 181 (181)
.+++.+..| .++++|+.||+..
T Consensus 241 ~l~~~~~~~-~~~~~Ll~Em~~~ 262 (266)
T 2r40_D 241 MCISLKLKN-RKLPPFLEEIWDV 262 (266)
T ss_dssp HHHHHHHTT-CCCCHHHHHHTTC
T ss_pred HHHHHHhcC-CCccHHHHHHhCC
Confidence 999999998 5999999999863
No 29
>1n83_A Nuclear receptor ROR-alpha; three-layered alpha helical sandwich, transcription regulation, nuclear protein, DNA binding, lipid binding protein; HET: CLR; 1.63A {Homo sapiens} SCOP: a.123.1.1 PDB: 1s0x_A*
Probab=100.00 E-value=1.3e-40 Score=249.51 Aligned_cols=176 Identities=16% Similarity=0.232 Sum_probs=154.7
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCCcccccCCCCCccchHHHHHHHHHHHHHh
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNGKASQTAADVRVLNGVLQRF 81 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (181)
+|+|||++|+|.+|+.+||+.|+|++|.++++++.|+++.+. .+.+.+++ ..++.+.....+.....+.+.+++.+|
T Consensus 81 ~VewaK~lP~F~~L~~~DQi~LLk~~~~el~lL~~a~~~~~~--~~~~l~~g-~~~~~~~~~~~~~~~~~~~i~~~~~~l 157 (270)
T 1n83_A 81 VVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQ--NNTVYFDG-KYASPDVFKSLGCEDFISFVFEFGKSL 157 (270)
T ss_dssp HHHHHHHSTTTTTSCHHHHHHHHHHHHHHHHHHHGGGGEETT--TTEEEETT-EEECGGGGGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCChhhcCHHHHHHHHHHhHHHHHHHHHHHHhcCC--CCeEEeCC-ccccHHHHHhcCHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999997654 33455543 344443333345567788899999999
Q ss_pred hhcCCChhhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHHhhhhhhhccchhhHHHHh
Q psy17882 82 RLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIF 161 (181)
Q Consensus 82 ~~l~l~~~E~~ll~ai~l~~pd~~~l~~~~~i~~~~~~~~~~L~~~~~~~~~~~~~r~~~Ll~~l~~lr~~~~~~~e~l~ 161 (181)
+++++|.+||+||||++|||||++|+++..+|+++|++|..+|.+||..+++ ++.||++||.++|.||.++.++.|.++
T Consensus 158 ~~L~ld~~E~~lLkAivLfnpd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~-~~~Rf~~LL~~L~~Lr~l~~~~~e~l~ 236 (270)
T 1n83_A 158 CSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHR-EDGILTKLICKVSTLRALCGRHTEKLM 236 (270)
T ss_dssp HTTCCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCT-TSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998887 579999999999999999999999999
Q ss_pred hccccCC----ccHHHHHHHHhcC
Q psy17882 162 FAKTVAN----TSMEKLLCDMYKN 181 (181)
Q Consensus 162 ~~~~~~~----~~~~~ll~e~l~~ 181 (181)
+.+..|+ +++++|+.||+.+
T Consensus 237 ~~~~~~~~~~~~~~~~Ll~Em~~~ 260 (270)
T 1n83_A 237 AFKAIYPDIVRLHFPPLYKELFTS 260 (270)
T ss_dssp HHHHHCHHHHHHHSCHHHHHHC--
T ss_pred HHHhcCcccccCCcCHHHHHHhCC
Confidence 9999887 4899999999863
No 30
>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear receptor, structural proteomic europe, spine, structural genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB: 1z5x_U* 2q60_A
Probab=100.00 E-value=7.6e-41 Score=252.68 Aligned_cols=178 Identities=31% Similarity=0.589 Sum_probs=157.5
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCCcccccCCCCCccchHHHH-HHHHHHHHH
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNGKASQTAADV-RVLNGVLQR 80 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 80 (181)
+|+|||++|+|.+|+.+||+.|+|++|.++++++.|+++.+..+ .+++++|..++.+.....+..... +.+.+++.+
T Consensus 99 ~vewaK~ip~F~~L~~~DQ~~LLk~~~~el~il~~a~rs~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (282)
T 1lbd_A 99 LVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKD--GILLATGLHVHRNSAHSAGVGAIFDRVLTELVSK 176 (282)
T ss_dssp HHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHGGGGSSS--EEECTTSCEEEHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcChhcCCHHHHHHHHHHHHHHHHHHHHHHhcccCCC--ceEecCCcccccchhhhcccHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999987633 456677765544322212223333 456789999
Q ss_pred hhhcCCChhhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHHhhhhhhhccchhhHHHH
Q psy17882 81 FRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHI 160 (181)
Q Consensus 81 l~~l~l~~~E~~ll~ai~l~~pd~~~l~~~~~i~~~~~~~~~~L~~~~~~~~~~~~~r~~~Ll~~l~~lr~~~~~~~e~l 160 (181)
|+++++|.+||+||+|++|||||++|+++..+|+++|+++..+|.+|+..++|+++.||++||.+||.||.++.++.|++
T Consensus 177 l~~L~ld~~E~~lLkaivL~~pd~~gLs~~~~v~~lq~~~~~~L~~y~~~~~~~~~~Rf~~LL~~L~~Lr~~~~~~~e~l 256 (282)
T 1lbd_A 177 MRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHL 256 (282)
T ss_dssp TTTTCCCHHHHHHHHHHHHSCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHHSCCSTTTHHHHHTTHHHHHHHHHHHHTTT
T ss_pred HHhhcCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCCccHHHHHHHHhcC
Q psy17882 161 FFAKTVANTSMEKLLCDMYKN 181 (181)
Q Consensus 161 ~~~~~~~~~~~~~ll~e~l~~ 181 (181)
++.+++|.+++++++.||+++
T Consensus 257 ~~~~~~~~~~i~~ll~eml~~ 277 (282)
T 1lbd_A 257 FFFKLIGDTPIDTFLMEMLEA 277 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHHTS
T ss_pred HHhccCCCCcHHHHHHHHHcC
Confidence 999999999999999999974
No 31
>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling, alternative DNA-binding, metal-binding, nucleus, polymorphism, receptor transcription; HET: 965; 2.00A {Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B* 1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A* 1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*
Probab=100.00 E-value=9.8e-41 Score=251.95 Aligned_cols=176 Identities=26% Similarity=0.347 Sum_probs=157.1
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCCcccccCCCCC-ccchHHHHHHHHHHHHH
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNGK-ASQTAADVRVLNGVLQR 80 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 80 (181)
+|+|||++|+|.+|+.+||+.|+|++|.++++++.|+++.+. .+.+.+++|..+++.... .+......+.+.+++.+
T Consensus 104 ~VewaK~lP~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~--~~~~~~~~g~~~~~~~~~~~g~~~~~~~~l~~~~~~ 181 (283)
T 3ipq_A 104 IVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPG--SESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRA 181 (283)
T ss_dssp HHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHTEETT--TTEEEETTTEEECHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHhcCcChhhCCHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCeEEeCCCceecHHHHHHcCCCHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999887653 346777777665443211 12224667888899999
Q ss_pred hhhcCCChhhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHHhhhhhhhccchhhHHHH
Q psy17882 81 FRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHI 160 (181)
Q Consensus 81 l~~l~l~~~E~~ll~ai~l~~pd~~~l~~~~~i~~~~~~~~~~L~~~~~~~~~~~~~r~~~Ll~~l~~lr~~~~~~~e~l 160 (181)
|+++++|.+||+|||||+|||||++|+++...|+++|++|..+|.+||..++|+++.||++||.+||.||.++.++.|.+
T Consensus 182 l~~L~ld~~E~~lLkAIvL~npd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~Lp~Lr~l~~~~~e~l 261 (283)
T 3ipq_A 182 MNELQLNDAEFALLIAISIFSADRPNVQDQLQVERLQHTYVEALHAYVSIHHPHDRLMFPRMLMKLVSLRTLSSVHSEQV 261 (283)
T ss_dssp HHHHTCCHHHHHHHHHHHHTCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCCccHHHHHHHHhc
Q psy17882 161 FFAKTVANTSMEKLLCDMYK 180 (181)
Q Consensus 161 ~~~~~~~~~~~~~ll~e~l~ 180 (181)
++.++.+. ++++|+.||+.
T Consensus 262 ~~~k~~~~-~~~~Ll~Em~~ 280 (283)
T 3ipq_A 262 FALRLQDK-KLPPLLSEIWD 280 (283)
T ss_dssp HHHHHTTC-CCCHHHHHHHC
T ss_pred hhhcCCCC-CCChHHHHHhc
Confidence 99999875 99999999985
No 32
>2ocf_A Estrogen receptor; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens}
Probab=100.00 E-value=5.9e-41 Score=254.21 Aligned_cols=178 Identities=25% Similarity=0.446 Sum_probs=155.2
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCCcccccCCCC-CccchHHHHHHHHHHHHH
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG-KASQTAADVRVLNGVLQR 80 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 80 (181)
+|+|||++|+|.+|+.+||+.|+|++|.++++++.|+++.+.. +.+.+++|..+++... ...+.....+.+.+++.+
T Consensus 60 ~VewAK~lP~F~~L~~~DQi~LLk~~w~el~lL~~a~rs~~~~--~~l~~~~g~~~~~~~~~~~~g~~~~~~~l~~~~~~ 137 (298)
T 2ocf_A 60 MINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHP--GKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSR 137 (298)
T ss_dssp HHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHTTTST--TEEEEETTEEEEHHHHTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcchhcCCHHHHHHHHHHhhHHHHHHHHHHHhcccC--CceeecCCceechhhhhhhhhHHHHHHHHHHHHHh
Confidence 6899999999999999999999999999999999999998753 5788888876655322 223445667788899999
Q ss_pred hhhcCCChhhhhhhhhhhhccCCC--------CCCCCHHHHHHHHHHHHHHHHHHHhhcC---CCCcchHHHHHhhhhhh
Q psy17882 81 FRLVGVDPAEFACLKAVVLFKSET--------RGLKDSLQVENLQDQAQVMLAQHVRTHH---PAQPARFGRLLLMTSQC 149 (181)
Q Consensus 81 l~~l~l~~~E~~ll~ai~l~~pd~--------~~l~~~~~i~~~~~~~~~~L~~~~~~~~---~~~~~r~~~Ll~~l~~l 149 (181)
|+++++|.+||+|||||+|||||+ +|+++..+|+++|++|..+|.+||..++ ++++.||++||+++|.|
T Consensus 138 l~~L~ld~~Ey~lLkAIvLfnpd~~~LS~~~~~gL~~~~~ve~lqe~~~~aL~~y~~~~~~~~~~~~~RF~~LLl~Lp~L 217 (298)
T 2ocf_A 138 FRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHI 217 (298)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHCSCCC-----------CHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HhhhCcCHHHHHHHHHHHHcCCCccccccccccccccHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 6777789999999999999999998764 47889999999999999
Q ss_pred hccchhhHHHHhhccccCCccHHHHHHHHhcC
Q psy17882 150 RNIPSARVQHIFFAKTVANTSMEKLLCDMYKN 181 (181)
Q Consensus 150 r~~~~~~~e~l~~~~~~~~~~~~~ll~e~l~~ 181 (181)
|.++.++.|.+++++++|.+++++|+.||+++
T Consensus 218 r~i~~~~~e~l~~~kl~g~~~i~~Ll~Eml~~ 249 (298)
T 2ocf_A 218 RHMSNKGMEHLYSMKCKNVVPLSDLLLEMLDA 249 (298)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHcC
Confidence 99999999999999999999999999999864
No 33
>1nrl_A Orphan nuclear receptor PXR; PXR, xenobiotic, SRC-1, ligand binding domain, transcription; HET: SRL; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1ilh_A* 1ilg_A* 1m13_A* 2qnv_A* 3r8d_A* 3ctb_A 3ctc_A 3hvl_A* 1skx_A* 2o9i_A*
Probab=100.00 E-value=2.3e-40 Score=252.46 Aligned_cols=175 Identities=18% Similarity=0.238 Sum_probs=155.6
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCCcccccCCCCCccchH-HHHHHHHHHHHH
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNGKASQTA-ADVRVLNGVLQR 80 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 80 (181)
+|+|||++|+|.+|+.+||+.|+|++|.++++++.|+++.+. .+.+.+++ ..++.... ..+.. ...+.+.+++.+
T Consensus 136 ~VewAK~lP~F~~L~~~DQi~LLk~~w~el~lL~~a~~~~~~--~~~~l~~~-~~~~~~~~-~~g~~~~~~~~i~~~~~~ 211 (316)
T 1nrl_A 136 IISFAKVISYFRDLPIEDQISLLKGAAFELCQLRFNTVFNAE--TGTWECGR-LSYCLEDT-AGGFQQLLLEPMLKFHYM 211 (316)
T ss_dssp HHHHHHHCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTEETT--TTEEEETT-EEEEECCC-SSCHHHHTTSHHHHHHHH
T ss_pred HHHHHHhCcchhhcCHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCeEEECC-EeecHHHH-hccccHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999987654 33555554 44444333 23333 566788899999
Q ss_pred hhhcCCChhhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCC--CCcchHHHHHhhhhhhhccchhhHH
Q psy17882 81 FRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHP--AQPARFGRLLLMTSQCRNIPSARVQ 158 (181)
Q Consensus 81 l~~l~l~~~E~~ll~ai~l~~pd~~~l~~~~~i~~~~~~~~~~L~~~~~~~~~--~~~~r~~~Ll~~l~~lr~~~~~~~e 158 (181)
|+++++|.+||+|||||+|||||++|+++...|+++|++|..+|.+||..+|| +++.||++||.+||.||.++.++.|
T Consensus 212 l~~L~ld~~E~alLkAIvLfnpd~~gL~~~~~Ve~lqe~~~~aL~~y~~~~~p~~~~~~RF~kLLl~Lp~LR~l~~~~~e 291 (316)
T 1nrl_A 212 LKKLQLHEEEYVLMQAISLFSPDRPGVLQHRVVDQLQEQFAITLKSYIECNRPQPAHRFLFLKIMAMLTELRSINAQHTQ 291 (316)
T ss_dssp HHHTCCCHHHHHHHHHHHHTCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCCSGGGTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998 7899999999999999999999999
Q ss_pred HHhhccccCCccHHHHHHHHhcC
Q psy17882 159 HIFFAKTVANTSMEKLLCDMYKN 181 (181)
Q Consensus 159 ~l~~~~~~~~~~~~~ll~e~l~~ 181 (181)
.+++.+..+. ++++|+.||+.+
T Consensus 292 ~l~~~k~~~~-~i~~Ll~Eml~~ 313 (316)
T 1nrl_A 292 RLLRIQDIHP-FATPLMQELFGI 313 (316)
T ss_dssp HHHHHHHHSC-CCCHHHHHHTTC
T ss_pred HHHHHHhcCC-chHHHHHHHHcC
Confidence 9999998888 999999999974
No 34
>2o4j_A Vitamin D3 receptor; nuclear receptor-ligand complex, hormone/growth factor receptor complex; HET: VD4; 1.74A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1rk3_A* 1rjk_A* 1rkh_A* 1rkg_A* 2o4r_A*
Probab=100.00 E-value=1.7e-40 Score=251.55 Aligned_cols=178 Identities=19% Similarity=0.259 Sum_probs=155.2
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccC-CcccccCCCC-CccchHHHHHHHHHHHH
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA-SEHVAAVPNG-KASQTAADVRVLNGVLQ 79 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 79 (181)
+|+|||++|+|.+|+.+||+.|+|++|.++++++.|+++.+. .+.+.++ +|..+..... ..+......+.+.+++.
T Consensus 75 ~VewAK~iP~F~~L~~~DQi~LLk~~~~el~lL~~a~~~~~~--~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~ 152 (292)
T 2o4j_A 75 VIGFAKMIPGFRDLTSDDQIVLLKSSAIEVIMLRSNQSFTMD--DMSWDCGSQDYKYDVTDVSKAGHTLELIEPLIKFQV 152 (292)
T ss_dssp HHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHGGGTEETT--TTEEECSSGGGEECHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHcCcchhhccHHHHHHHHHHhHHHHHHHHHHHHhcCC--CCeEEecCCCeEEcHHHHHhcCCcHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999876543 3456666 3544433211 11222367788899999
Q ss_pred HhhhcCCChhhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCC--CCcchHHHHHhhhhhhhccchhhH
Q psy17882 80 RFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHP--AQPARFGRLLLMTSQCRNIPSARV 157 (181)
Q Consensus 80 ~l~~l~l~~~E~~ll~ai~l~~pd~~~l~~~~~i~~~~~~~~~~L~~~~~~~~~--~~~~r~~~Ll~~l~~lr~~~~~~~ 157 (181)
+|+++++|.+||+||||++|||||++|+++..+|+++|++|..+|.+||..++| +++.||++||+++|.||.++.++.
T Consensus 153 ~l~~L~ld~~E~~lLkAIvLfnpd~~gL~~~~~Ve~lq~~~~~aL~~y~~~~~p~~~~~~Rf~~LL~~L~~Lr~l~~~~~ 232 (292)
T 2o4j_A 153 GLKKLNLHEEEHVLLMAICIVSPDRPGVQDAKLVEAIQDRLSNTLQTYIRCRHPPPGSHQLYAKMIQKLADLRSLNEEHS 232 (292)
T ss_dssp HHHHTCCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHSCTTTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998 899999999999999999999999
Q ss_pred HHHhhcccc--CCccHHHHHHHHhcC
Q psy17882 158 QHIFFAKTV--ANTSMEKLLCDMYKN 181 (181)
Q Consensus 158 e~l~~~~~~--~~~~~~~ll~e~l~~ 181 (181)
|.+++.+++ +.+++++|+.||+++
T Consensus 233 e~l~~~~~~~~~~~~~~~Ll~Eml~~ 258 (292)
T 2o4j_A 233 KQYRSLSFQPENSMKLTPLVLEVFGN 258 (292)
T ss_dssp HHHHHHHHSHHHHTTSCHHHHHHHCC
T ss_pred HHHHHhhccccCCCChhHHHHHHHcC
Confidence 999999985 578999999999864
No 35
>1xvp_B Orphan nuclear receptor NR1I3; CAR, RXR, citco, SRC1, DNA binding protein; HET: F15 CID; 2.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xv9_B* 1xnx_A* 1xls_E*
Probab=100.00 E-value=1.6e-40 Score=246.35 Aligned_cols=174 Identities=20% Similarity=0.289 Sum_probs=149.3
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCCcccccCCCCCccc-hHHHHHHHHHHHHH
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNGKASQ-TAADVRVLNGVLQR 80 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (181)
+|+|||++|+|.+|+.+||+.|+|++|.++++++.|+++....+ .+ +.++..++.+.....+ .....+.+.+++.+
T Consensus 70 ~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~l~~a~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 146 (246)
T 1xvp_B 70 VIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ--NF-LCGPLRYTIEDGARVGFQVEFLELLFHFHGT 146 (246)
T ss_dssp HHHHHTTCHHHHHSCHHHHHHHHHHHHHHHHHHHHGGGEETTTT--EE-ECSSCEECHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCcchhhCCHHHHHHHHHhhHHHHHHHHHHHHhccccC--eE-eeCCeeecHHHHHHccccHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999998875422 33 3344333322111112 23567788999999
Q ss_pred hhhcCCChhhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhh--cCCCCcchHHHHHhhhhhhhccchhhHH
Q psy17882 81 FRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRT--HHPAQPARFGRLLLMTSQCRNIPSARVQ 158 (181)
Q Consensus 81 l~~l~l~~~E~~ll~ai~l~~pd~~~l~~~~~i~~~~~~~~~~L~~~~~~--~~~~~~~r~~~Ll~~l~~lr~~~~~~~e 158 (181)
|+++++|.+||+||||++|||||++|+++..+|+++|++|..+|.+||.. .+++++.||++||.++|.||.++.++.|
T Consensus 147 l~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~~rf~~LL~~L~~Lr~i~~~~~e 226 (246)
T 1xvp_B 147 LRKLQLQEPEYVLLAAMALFSPDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGY 226 (246)
T ss_dssp HHHTCCCHHHHHHHHHHHHSCSSSTTCSCHHHHHHHHHHHHHHHHHHHHTCSSCCSCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999994 4678899999999999999999999999
Q ss_pred HHhhccccCCccHHHHHHHHhc
Q psy17882 159 HIFFAKTVANTSMEKLLCDMYK 180 (181)
Q Consensus 159 ~l~~~~~~~~~~~~~ll~e~l~ 180 (181)
.+++. .|.+++++|+.||+.
T Consensus 227 ~l~~~--~~~~~~~~Ll~Em~~ 246 (246)
T 1xvp_B 227 QIQHI--QGLSAMMPLLQEICS 246 (246)
T ss_dssp HHHHS--TTHHHHCHHHHHHTC
T ss_pred HHHHH--hCCCCccHHHHHhcC
Confidence 99985 688999999999984
No 36
>2hc4_A Vitamin D receptor; alpha helical sandwich, gene regulation; HET: VDX; 2.20A {Danio rerio} PDB: 2hbh_A* 2hcd_A* 3dr1_A* 3o1d_A* 3o1e_A*
Probab=100.00 E-value=6.6e-40 Score=249.14 Aligned_cols=178 Identities=19% Similarity=0.280 Sum_probs=153.1
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCC-cccccCCCC-CccchHHHHHHHHHHHH
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNAS-EHVAAVPNG-KASQTAADVRVLNGVLQ 79 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~ 79 (181)
+|+|||++|+|.+|+.+||+.|+|++|.++++++.|+++.. ..+.+.+++ +..+..... ........++.+.+++.
T Consensus 118 ~VewAK~iP~F~~L~~~DQi~LLk~~w~el~lL~~a~~~~~--~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~ 195 (302)
T 2hc4_A 118 VIGFAKMIPGFRDLTAEDQIALLKSSAIEIIMLRSNQSFSL--EDMSWSCGGPDFKYCINDVTKAGHTLELLEPLVKFQV 195 (302)
T ss_dssp HHHHHTTSTTTTTSCHHHHHHHHHHHHHHHHHHHGGGTEET--TTTEEECSSSTTEECHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCeEEecCCCeeecHHHHHHccCcHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999965433 233444543 333322111 11222567788899999
Q ss_pred HhhhcCCChhhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHHhhhhhhhccchhhHHH
Q psy17882 80 RFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQH 159 (181)
Q Consensus 80 ~l~~l~l~~~E~~ll~ai~l~~pd~~~l~~~~~i~~~~~~~~~~L~~~~~~~~~~~~~r~~~Ll~~l~~lr~~~~~~~e~ 159 (181)
+|+++++|.+||+|||||+|||||++|+++..+|+++|++|..+|.+||..+||+++.||++||.++|.||.++..+.|.
T Consensus 196 ~l~~L~ld~~E~alLkAIvLfnpd~~gL~~~~~Ve~lqe~~~~aL~~y~~~~~p~~~~RF~~LLl~L~~Lr~l~~~~~e~ 275 (302)
T 2hc4_A 196 GLKKLKLHEEEHVLLMAICLLSPDRPGVQDHVRIEALQDRLCDVLQAYIRIQHPGGRLLYAKMIQKLADLRSLNEEHSKQ 275 (302)
T ss_dssp HHHTTCCCHHHHHHHHHHHHTCSCSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccccCC--ccHHHHHHHHhcC
Q psy17882 160 IFFAKTVAN--TSMEKLLCDMYKN 181 (181)
Q Consensus 160 l~~~~~~~~--~~~~~ll~e~l~~ 181 (181)
+++.++.|. +++++|+.||+.+
T Consensus 276 l~~~~~~~~~~~~~~~Ll~Em~~~ 299 (302)
T 2hc4_A 276 YRSLSFQPEHSMQLTPLVLEVFGS 299 (302)
T ss_dssp HHHHHHCHHHHTTSCHHHHHHSSS
T ss_pred HHHhhccCCCCCCccHHHHHHHcC
Confidence 999888754 7899999999864
No 37
>3vhv_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, non-steroidal antagonist; HET: LD1 LD2; 1.35A {Homo sapiens} SCOP: a.123.1.1 PDB: 2aax_A* 2aa6_A* 2ab2_A* 2aa2_A* 2aa5_A* 2aa7_A* 2a3i_A* 1y9r_A* 1ya3_A* 2oax_A* 2abi_A* 2q1h_A* 2q1v_A* 2q3y_A* 3ry9_A* 4fne_A* 4fn9_A*
Probab=100.00 E-value=1.5e-40 Score=248.03 Aligned_cols=179 Identities=21% Similarity=0.308 Sum_probs=153.5
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCCcccccCCCCCccchHHHHHHHHHHHHHh
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNGKASQTAADVRVLNGVLQRF 81 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (181)
+|+|||++|+|.+|+.+||+.|+|++|.++++++.|+++.+..+.+.+.+++|..++.+.....+..+..+.+.+++.++
T Consensus 56 ~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~l 135 (260)
T 3vhv_A 56 VVKWAKVLPGFKNLPLEDQITLIQYSWMSLLSFALSWRSYKHTNSQFLYFAPDLVFNEEKMHQSAMYELCQGMHQISLQF 135 (260)
T ss_dssp HHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEETTEEECHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhChHHhcCCHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCeEEecCCccccHHHhhcccHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999887655557778877666543322234456678889999999
Q ss_pred hhcCCChhhhhhhhhhhhccC-CCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCC---cchHHHHHhhhhhhhccchhhH
Q psy17882 82 RLVGVDPAEFACLKAVVLFKS-ETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQ---PARFGRLLLMTSQCRNIPSARV 157 (181)
Q Consensus 82 ~~l~l~~~E~~ll~ai~l~~p-d~~~l~~~~~i~~~~~~~~~~L~~~~~~~~~~~---~~r~~~Ll~~l~~lr~~~~~~~ 157 (181)
+++++|.+||+||||+++||| |++|+++..+|+++|++|..+|.+||..+++++ +.||++||.++|.||+++.++.
T Consensus 136 ~~L~ld~~E~~lLkAIvLfnp~d~~gL~~~~~ve~lqe~~~~aL~~y~~~~~~~~~~~~~RF~~LL~~Lp~Lr~l~~~~~ 215 (260)
T 3vhv_A 136 VRLQLTFEEYTIMKVLLLLSTIPKDGLKSQAAFEEMRTNYIKELRKMVTKCPNNSGQSWQRFYQLTKLLDSMHDLVSDLL 215 (260)
T ss_dssp HHHTCCHHHHHHHHHHHHTSEEETTCCTTHHHHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHcCCcCCCCCcCHHHHHHHHHHHHHHHHHHHHhcCCCCCcHhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 999999999999999999999999999988855 6899999999999999999999
Q ss_pred HHHhhccc---cCCccHHHHHHHHhc
Q psy17882 158 QHIFFAKT---VANTSMEKLLCDMYK 180 (181)
Q Consensus 158 e~l~~~~~---~~~~~~~~ll~e~l~ 180 (181)
|.++|... .+.+++++++.||+.
T Consensus 216 e~lff~~~~~~~~~~~~p~Ll~Ei~~ 241 (260)
T 3vhv_A 216 EFCFYTFRESHALKVEFPAMLVEIIS 241 (260)
T ss_dssp HHHHHHHHTHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHhhcccCCCcHHHHHHHh
Confidence 99986543 346789999999985
No 38
>2nxx_E Ecdysone receptor (ECR, NRH1); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=100.00 E-value=7.3e-40 Score=243.03 Aligned_cols=176 Identities=21% Similarity=0.283 Sum_probs=156.4
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCCcccccCCCCCccchHHHHHHHHHHHHHh
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNGKASQTAADVRVLNGVLQRF 81 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (181)
+|+|||++|+|.+|+.+||+.|+|++|.++++++.|+++.+. .+.+.+++|..++++.....+.....+.+.+++.+|
T Consensus 68 ~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~l 145 (248)
T 2nxx_E 68 IVEFAKRLPGFDKLLREDQIALLKACSSEVMMFRMARRYDVQ--TDSILFVNNQPYSRDSYNLAGMGETIEDLLHFCRTM 145 (248)
T ss_dssp HHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHTTEETT--TTEEECTTSCEECHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCchhhCCHHHHHHHHHHhHHHHHHHHHHHHhcCC--CCeEEecCCceecHHHHHhcchHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999997653 446778888766543222233456778888999999
Q ss_pred hhcCCChhhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCC-CCcchHHHHHhhhhhhhccchhhHHHH
Q psy17882 82 RLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHP-AQPARFGRLLLMTSQCRNIPSARVQHI 160 (181)
Q Consensus 82 ~~l~l~~~E~~ll~ai~l~~pd~~~l~~~~~i~~~~~~~~~~L~~~~~~~~~-~~~~r~~~Ll~~l~~lr~~~~~~~e~l 160 (181)
+++++|.+||+||||++||| |++|+++...|+++|++|..+|.+||..+++ +++.||++||.++|.||.++.++.|.+
T Consensus 146 ~~L~ld~~E~~lLkAivL~~-d~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~Rf~~LL~~L~~Lr~l~~~~~e~l 224 (248)
T 2nxx_E 146 YSMRVDNAEYALLTAIVIFS-ERPALIEGWKVEKIQEIYLEALRAYVDNRRKPKPGTIFAKLLSVLTELRTLGNQNSEMC 224 (248)
T ss_dssp HHTTCCHHHHHHHHHHHHTC-CCSSCTTHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHcC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999997 9999999999999999999999999999884 688999999999999999999999999
Q ss_pred hhccccCCccHHHHHHHHhcC
Q psy17882 161 FFAKTVANTSMEKLLCDMYKN 181 (181)
Q Consensus 161 ~~~~~~~~~~~~~ll~e~l~~ 181 (181)
++.+..+ .++++|+.||+..
T Consensus 225 ~~~~~~~-~~~~~Ll~Em~~~ 244 (248)
T 2nxx_E 225 FSLKLKN-KKLPPFLAEIWDV 244 (248)
T ss_dssp HHHHHTT-CCCCHHHHHHTTT
T ss_pred HHHhCCC-CCccHHHHHHhcC
Confidence 9988876 5999999999863
No 39
>3u9q_A Peroxisome proliferator-activated receptor gamma; nuclear receptor, adipogenesis, RXRA, nucleus, transcription; HET: DKA; 1.52A {Homo sapiens} SCOP: a.123.1.1 PDB: 1i7i_A* 3ty0_A* 1zeo_A* 2p4y_A* 3et3_A* 3et0_A* 2hwq_A* 2ath_A* 2f4b_A* 2g0g_A* 2g0h_A* 2gtk_A* 2fvj_A* 2hwr_A* 2prg_A* 2q8s_A* 3fej_A* 3g9e_A* 3gbk_A* 3ia6_A* ...
Probab=100.00 E-value=5.5e-40 Score=245.86 Aligned_cols=176 Identities=22% Similarity=0.314 Sum_probs=150.4
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCCccc-ccCCCCC--ccchHHHHHHHHHHH
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHV-AAVPNGK--ASQTAADVRVLNGVL 78 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~ 78 (181)
+|+|||++|+|.+|+.+||+.|+|++|.++++++.|+++.+ . ...+.+|.. ++++... ..+.....+.+.+++
T Consensus 89 ~VewAK~iP~F~~L~~~DQi~LLk~~~~el~lL~~a~~~~~---~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (269)
T 3u9q_A 89 ITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNK---D-GVLISEGQGFMTREFLKSLRKPFGDFMEPKFEFA 164 (269)
T ss_dssp HHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHTEET---T-EEEETTTTEEEEHHHHHHSCTTGGGSSHHHHHHH
T ss_pred HHHHHcCCCChhhcCHHHHHHHHHHhhHHHHHHHHHHhcCC---C-CeEEeCCCccccHHHHHHhhhhHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999976532 2 344444432 3322111 012334456788999
Q ss_pred HHhhhcCCChhhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHHhhhhhhhccchhhHH
Q psy17882 79 QRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQ 158 (181)
Q Consensus 79 ~~l~~l~l~~~E~~ll~ai~l~~pd~~~l~~~~~i~~~~~~~~~~L~~~~~~~~~~~~~r~~~Ll~~l~~lr~~~~~~~e 158 (181)
.+|+++++|++||+||+|+++||||++|+++..+|+++|++|..+|.+||..+||+++.||++||.++|.||+++..+.+
T Consensus 165 ~~l~~L~ld~~E~alLkAIvLfnpd~~gL~~~~~Ve~lqe~~~~aL~~y~~~~~p~~~~Rf~kLL~~Lp~LR~i~~~~~~ 244 (269)
T 3u9q_A 165 VKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQ 244 (269)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHTCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhc-cccCCccHHHHHHHHhcC
Q psy17882 159 HIFFA-KTVANTSMEKLLCDMYKN 181 (181)
Q Consensus 159 ~l~~~-~~~~~~~~~~ll~e~l~~ 181 (181)
.+.++ ...+.+++++|+.||+++
T Consensus 245 ~l~~~k~~~~~~~~~~Ll~Em~~~ 268 (269)
T 3u9q_A 245 LLQVIKKTETDMSLHPLLQEIYKD 268 (269)
T ss_dssp HHHHHHHSCSSCCCCHHHHHHHSC
T ss_pred HHHHHhCcCCCCCcCHHHHHHHhh
Confidence 99654 467889999999999975
No 40
>3cqv_A Nuclear receptor subfamily 1 group D member 2; reverb beta, heme, NR1D2, DNA-binding, metal-binding, nucleus, repressor, transcription; HET: HEM; 1.90A {Homo sapiens} PDB: 2v7c_A 2v0v_A
Probab=100.00 E-value=5.2e-40 Score=236.48 Aligned_cols=163 Identities=20% Similarity=0.278 Sum_probs=143.7
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCCcccccCCCCCccchHHHHHHHHHHHHHh
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNGKASQTAADVRVLNGVLQRF 81 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (181)
+|+|||++|+|.+|+.+||+.|+|++|.++++++.|+++.. +.+.+.+++|..++.+.....+.....+.+.+++.++
T Consensus 36 ~V~waK~lp~F~~L~~~DQ~~LLk~~~~e~~~l~~a~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~ 113 (199)
T 3cqv_A 36 VVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDA--KERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKL 113 (199)
T ss_dssp HHHHHHTSGGGGGSCHHHHHHHHHHHHHHHHHHHTGGGEET--TTTEEECTTSCEEEHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHhCC--CCCeEEecCCCeecHHHHHhcCcHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999986543 3446778887766543222223345677889999999
Q ss_pred hhcCCChhhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHHhhhhhhhccchhhHHHHh
Q psy17882 82 RLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIF 161 (181)
Q Consensus 82 ~~l~l~~~E~~ll~ai~l~~pd~~~l~~~~~i~~~~~~~~~~L~~~~~~~~~~~~~r~~~Ll~~l~~lr~~~~~~~e~l~ 161 (181)
+++++|.+||+||||+++||||++|+++...|+++|++|..+|.+|+..++|+++.||++||.++|.||++++++.|+++
T Consensus 114 ~~L~ld~~E~~lLkaivL~~pd~~gL~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~Rf~~LL~~L~~Lr~l~~~~~E~l~ 193 (199)
T 3cqv_A 114 NALQLSDEEMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDLRSLNNMHSEELL 193 (199)
T ss_dssp HTTCCCHHHHHHHHHHHHHTSCCTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccc
Q psy17882 162 FAKTV 166 (181)
Q Consensus 162 ~~~~~ 166 (181)
++++.
T Consensus 194 ~~k~~ 198 (199)
T 3cqv_A 194 AFKVH 198 (199)
T ss_dssp TCC--
T ss_pred HhcCC
Confidence 98764
No 41
>1ovl_A Orphan nuclear receptor NURR1 (MSe 414, 496, 511); NUUR1, LBD, transcription; 2.20A {Homo sapiens} SCOP: a.123.1.1
Probab=100.00 E-value=1.6e-39 Score=244.15 Aligned_cols=175 Identities=23% Similarity=0.362 Sum_probs=156.5
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCCcccccCCCCCccchHHHHHHHHHHHHHh
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNGKASQTAADVRVLNGVLQRF 81 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (181)
+|+|||++|+|.+|+.+||+.|+|++|.++++++.|+++.+.+ +.+.+++|..++.... ..+.....+.+.+++.+|
T Consensus 90 ~v~waK~ip~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~~--~~l~~~~g~~~~~~~~-~~~~~~~~~~l~~~~~~l 166 (271)
T 1ovl_A 90 IRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPVE--GKLIFCNGVVLHRLQC-VRGFGEWIDSIVEFSSNL 166 (271)
T ss_dssp HHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHSBTTT--TEEECTTSBEEEHHHH-TTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccCChHHHHHHHHHhHHHHHHHHHHHHhcCCC--CeEEeeCCeeecHHHH-HhhHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999998763 3778888876654321 122345667888999999
Q ss_pred hhcCCChhhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhc--CCCCcchHHHHHhhhhhhhccchhhHHH
Q psy17882 82 RLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTH--HPAQPARFGRLLLMTSQCRNIPSARVQH 159 (181)
Q Consensus 82 ~~l~l~~~E~~ll~ai~l~~pd~~~l~~~~~i~~~~~~~~~~L~~~~~~~--~~~~~~r~~~Ll~~l~~lr~~~~~~~e~ 159 (181)
+++++|.+||+||||++|||| ++|+++...|+++|++|..+|.+||..+ +++++.||++||+++|.||+++.++.|.
T Consensus 167 ~~L~ld~~E~~lLkAivL~~~-~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~~Rf~~LL~~L~~Lr~l~~~~~e~ 245 (271)
T 1ovl_A 167 QNMNIDISAFSCIAALAMVTE-RHGLKEPKRVEELQNKIVNCLKDHVTFNNGGLNRPNYLSKLLGKLPELRTLCTQGLQR 245 (271)
T ss_dssp HTTCCCHHHHHHHHHHHHSSC-CTTCSCHHHHHHHHHHHHHHHHHHHHGGGTTTTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHhCC-CCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999996 8999999999999999999999999976 4688999999999999999999999999
Q ss_pred HhhccccCCccHHHHHHHHhc
Q psy17882 160 IFFAKTVANTSMEKLLCDMYK 180 (181)
Q Consensus 160 l~~~~~~~~~~~~~ll~e~l~ 180 (181)
+++.+++|.+++++++.||+.
T Consensus 246 l~~~~~~~~~~~~~Ll~el~~ 266 (271)
T 1ovl_A 246 IFYLKLEDLVPPPAIIDKLFL 266 (271)
T ss_dssp HHHHHHHTSSCCCHHHHHHHH
T ss_pred HHHHHcCCCCCCcHHHHHHHH
Confidence 999999999999999999875
No 42
>1sqn_A PR, progesterone receptor; nuclear receptor, steroid receptor, norethindrone, birth control, hormone/growth factor receptior complex; HET: NDR; 1.45A {Homo sapiens} SCOP: a.123.1.1 PDB: 3g8o_A* 3g8n_A* 3d90_A* 1e3k_A* 1sr7_A* 1zuc_B* 3zr7_A* 2w8y_A* 3zra_A* 3zrb_A* 4a2j_A* 4apu_A* 1a28_A* 2ovh_A* 2ovm_A* 3hq5_A* 3kba_A*
Probab=100.00 E-value=2.5e-40 Score=247.08 Aligned_cols=177 Identities=21% Similarity=0.352 Sum_probs=155.2
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCCcccccCCCCCccchHHHHHHHHHHHHHh
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNGKASQTAADVRVLNGVLQRF 81 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (181)
+|+|||++|+|.+|+.+||+.|+|++|.++++++.|+++.+..+++.+.+++|..++.+.....+....++.+.+++.+|
T Consensus 57 ~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l 136 (261)
T 1sqn_A 57 VVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLILNEQRMKESSFYSLCLTMWQIPQEF 136 (261)
T ss_dssp HHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEETTEEECGGGCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCccHhhCCHHHHHHHHHhhHHHHHHHHHHHHhhhcCCCCeEEeCCCcccchHhhhhhhHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999987644445777777776654444444456678889999999
Q ss_pred hhcCCChhhhhhhhhhhhccC-CCCCCCCHHHHHHHHHHHHHHHHHHHhhc---CCCCcchHHHHHhhhhhhhccchhhH
Q psy17882 82 RLVGVDPAEFACLKAVVLFKS-ETRGLKDSLQVENLQDQAQVMLAQHVRTH---HPAQPARFGRLLLMTSQCRNIPSARV 157 (181)
Q Consensus 82 ~~l~l~~~E~~ll~ai~l~~p-d~~~l~~~~~i~~~~~~~~~~L~~~~~~~---~~~~~~r~~~Ll~~l~~lr~~~~~~~ 157 (181)
+++++|.+||+||||++|||| |++|+++..+|+++|++|..+|.+||..+ +++++.||++||.++|.||+++..+
T Consensus 137 ~~L~ld~~E~~lLkAIvLfnp~~~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~~~~Rf~~LL~~L~~Lr~~~~~~- 215 (261)
T 1sqn_A 137 VKLQVSQEEFLCMKVLLLLNTIPLEGLRSQTQFEEMRSSYIRELIKAIGLRQKGVVSSSQRFYQLTKLLDNLHDLVKQL- 215 (261)
T ss_dssp HHHTCCHHHHHHHHHHHHTSEECTTCCTTHHHHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHCCCHHHHHHHHHHHHcCCCcccccccHHHHHHHHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHhHHHHHHHHHH-
Confidence 999999999999999999999 89999999999999999999999999864 4578899999999999999998765
Q ss_pred HHHhhcccc-----CCccHHHHHHHHhc
Q psy17882 158 QHIFFAKTV-----ANTSMEKLLCDMYK 180 (181)
Q Consensus 158 e~l~~~~~~-----~~~~~~~ll~e~l~ 180 (181)
++++.+++ |.+++++++.||+.
T Consensus 216 -~~~~~~~~~q~~~~~~~~~~Ll~Ei~~ 242 (261)
T 1sqn_A 216 -HLYCLNTFIQSRALSVEFPEMMSEVIA 242 (261)
T ss_dssp -HHHHHHHHHTHHHHTCCCCHHHHHHHH
T ss_pred -HHHHHHHHHHhcCCCCChHHHHHHHHh
Confidence 55556777 89999999999986
No 43
>3mnp_A Glucocorticoid receptor; protein-ligand complex, steroid nuclear receptor, mouse GR, hormone receptor; HET: DEX; 1.50A {Mus musculus} SCOP: a.123.1.1 PDB: 3mno_A* 3mne_A* 1m2z_A* 3k22_A* 3cld_A* 3k23_A* 3e7c_A* 1nhz_A* 1p93_A* 3bqd_A* 3h52_A* 3gn8_A* 4e2j_A*
Probab=100.00 E-value=4.5e-40 Score=245.54 Aligned_cols=179 Identities=19% Similarity=0.256 Sum_probs=158.2
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCCcccccCCCCCccchHHHHHHHHHHHHHh
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNGKASQTAADVRVLNGVLQRF 81 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (181)
+|+|||++|+|.+|+.+||+.|+|++|.++++++.|+++.+..+.+.+.+++|..++.+.....+..+..+.+.+++.++
T Consensus 58 ~VewaK~iP~F~~L~~~DQ~~LLk~~~~el~iL~~a~rs~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~l 137 (261)
T 3mnp_A 58 AVKWAKAIPGFRNLHLDDQMTLLQYSWMFLMVFALGWRSYRQASGNLLCFAPDLIINEQRMTLPCMYDQCKHMLFISTEL 137 (261)
T ss_dssp HHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEETTEEECHHHHTSTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcChhcCCHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCEEEecCCcccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999987655446778888766554433445556778889999999
Q ss_pred hhcCCChhhhhhhhhhhhccC-CCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCC---CcchHHHHHhhhhhhhccchhhH
Q psy17882 82 RLVGVDPAEFACLKAVVLFKS-ETRGLKDSLQVENLQDQAQVMLAQHVRTHHPA---QPARFGRLLLMTSQCRNIPSARV 157 (181)
Q Consensus 82 ~~l~l~~~E~~ll~ai~l~~p-d~~~l~~~~~i~~~~~~~~~~L~~~~~~~~~~---~~~r~~~Ll~~l~~lr~~~~~~~ 157 (181)
+++++|.+||+||||+++||| |++|+++..+|+++|++|..+|.+||..++++ ++.||++||.++|.||+++..+.
T Consensus 138 ~~L~ld~~E~~lLkAIvL~np~d~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~~~~Rf~~LL~lL~~Lr~l~~~~~ 217 (261)
T 3mnp_A 138 QRLQVSYEEYLCMKTLLLLSSVPKEGLKSQELFDEIRMTYIKELGKAIAKRGGNSSQNWQRFYQLTKLLDSMHDVVENLL 217 (261)
T ss_dssp HHHTCCHHHHHHHHHHHHTSEEETTCCTTHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHcCCCCcCCCccHHHHHHHHHHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 99999999999999999999999999999984 58999999999999999999999
Q ss_pred HHHhhcccc--CCccHHHHHHHHhc
Q psy17882 158 QHIFFAKTV--ANTSMEKLLCDMYK 180 (181)
Q Consensus 158 e~l~~~~~~--~~~~~~~ll~e~l~ 180 (181)
+.+++.... ....+++++.|++.
T Consensus 218 e~~f~~~~~~~~~~~~p~Ll~Ei~~ 242 (261)
T 3mnp_A 218 SYCFQTFLDKSMSIEFPEMLAEIIT 242 (261)
T ss_dssp HHHHHHHHCGGGCCCCCHHHHHHHH
T ss_pred HHHHHHHhhhcccCCCcHHHHHHHh
Confidence 998765544 45678999999985
No 44
>1osh_A BIle acid receptor; nuclear receptor, ligand binding domain, transcription; HET: FEX; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 3l1b_A* 3bej_A* 3fli_A* 3hc5_A* 3rvf_A* 3dct_A* 3dcu_A* 3ruu_A* 3rut_A* 3olf_A* 3okh_A* 3fxv_A* 3oki_A* 3omk_A* 3omm_A* 3oof_A* 3ook_A* 3hc6_A* 3p89_A* 3p88_A* ...
Probab=100.00 E-value=5.4e-40 Score=241.68 Aligned_cols=172 Identities=21% Similarity=0.329 Sum_probs=147.8
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCCcccccCCCC-CccchHHHHHHHHHHHHH
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG-KASQTAADVRVLNGVLQR 80 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 80 (181)
+|+|||++|+|.+|+.+||+.|+|++|.++++++.|+++.... .++|..+..+.. ..+......+.+.+++.+
T Consensus 58 ~vewaK~lp~F~~L~~~DQ~~LLk~~~~e~~~l~~a~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 131 (232)
T 1osh_A 58 LVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKL------PSGHSDLLEERIRNSGISDEYITPMFSFYKS 131 (232)
T ss_dssp HHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTS------CHHHHHHHHHHHHTSSCCTTTHHHHHHHHHH
T ss_pred HHHHHhcCCchhhCCHHHHHHHHHHhHHHHHHHHHHHHhCCcc------CCCCceecHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999998865321 111211111100 011122456778889999
Q ss_pred hhhcCCChhhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHHhhhhhhhccchhhHHHH
Q psy17882 81 FRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHI 160 (181)
Q Consensus 81 l~~l~l~~~E~~ll~ai~l~~pd~~~l~~~~~i~~~~~~~~~~L~~~~~~~~~~~~~r~~~Ll~~l~~lr~~~~~~~e~l 160 (181)
|+++++|.+||+||||++|||||++|+++...|+++|++|..+|.+||..++|+++.||++||.++|.||.++..+.|.+
T Consensus 132 l~~L~ld~~E~~lLkaivL~~pd~~gL~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~Rf~~LL~~L~~Lr~l~~~~~e~l 211 (232)
T 1osh_A 132 IGELKMTQEEYALLTAIVILSPDRQYIKDREAVEKLQEPLLDVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEML 211 (232)
T ss_dssp HHTTCCCHHHHHHHHHHHHTCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCCccHHHHHHHHhc
Q psy17882 161 FFAKTVANTSMEKLLCDMYK 180 (181)
Q Consensus 161 ~~~~~~~~~~~~~ll~e~l~ 180 (181)
++.+. +.+++++|+.||+.
T Consensus 212 ~~~k~-~~~~~~~Ll~Em~~ 230 (232)
T 1osh_A 212 MSWRV-NDHKFTPLLCEIWD 230 (232)
T ss_dssp HHHHH-TTCCCCHHHHHHHT
T ss_pred HHHHh-CCCCCChHHHHHhc
Confidence 99887 78999999999986
No 45
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=100.00 E-value=1.6e-39 Score=259.37 Aligned_cols=178 Identities=31% Similarity=0.584 Sum_probs=157.5
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCCcccccCCCCCccchHHHH-HHHHHHHHH
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNGKASQTAADV-RVLNGVLQR 80 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 80 (181)
+|+|||++|+|.+|+.+||+.|||++|.++++++.|+++.... +.+++++|..+++......+..... +.+.+++.+
T Consensus 284 vVeWAK~iP~F~~L~~~DQi~LLK~~w~elliL~~a~rs~~~~--~~~ll~~g~~i~~~~~~~~~~~~~~~~il~~lv~~ 361 (467)
T 3dzy_A 284 LVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVK--DGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSK 361 (467)
T ss_dssp HHHHHHHSTTSTTSCHHHHHHHHHHHHHHHHHHHHHHHTSSST--TBCCCSSSCCCBTHHHHTTTCHHHHHHHHHHTHHH
T ss_pred HHHHHHhCcchhcCCHHHHHHHHHhHHHHHHHHHHHHHhccCC--CceEecCCceechhhhhhhcchHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999987653 3566677766655332222333333 445599999
Q ss_pred hhhcCCChhhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHHhhhhhhhccchhhHHHH
Q psy17882 81 FRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHI 160 (181)
Q Consensus 81 l~~l~l~~~E~~ll~ai~l~~pd~~~l~~~~~i~~~~~~~~~~L~~~~~~~~~~~~~r~~~Ll~~l~~lr~~~~~~~e~l 160 (181)
|+++++|++||+||+|++|||||++|+++.++|+++|+++..+|++|+..++++++.||++||++||.||.++.++.|++
T Consensus 362 l~~L~ld~~E~~lLkAIvLfnpd~~gL~~~~~Ve~lQe~~~~aL~~Y~~~~~p~~p~Rf~kLLl~Lp~LRsi~~~~~E~l 441 (467)
T 3dzy_A 362 MRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHL 441 (467)
T ss_dssp HHHHTCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCCccHHHHHHHHhcC
Q psy17882 161 FFAKTVANTSMEKLLCDMYKN 181 (181)
Q Consensus 161 ~~~~~~~~~~~~~ll~e~l~~ 181 (181)
++++++|.+++++|+.|||++
T Consensus 442 ~~~kl~g~v~i~~Ll~EMl~a 462 (467)
T 3dzy_A 442 FFFKLIGDTPIDTFLMEMLEA 462 (467)
T ss_dssp TTTSTTSCCCCCSHHHHCC--
T ss_pred HHhhccCCccHHHHHHHHHcC
Confidence 999999999999999999974
No 46
>3l0l_A Nuclear receptor ROR-gamma; nuclear receptor, rorgamma, alternative splicing, DNA-bindin binding, nucleus, receptor, zinc-finger, acetylation, activator; HET: HC3; 1.74A {Homo sapiens} SCOP: a.123.1.0 PDB: 3b0w_A* 3kyt_A* 3l0j_A*
Probab=100.00 E-value=5.6e-40 Score=243.51 Aligned_cols=173 Identities=18% Similarity=0.256 Sum_probs=152.9
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCCcccccCCCCCccchHHHHHHHHHHHHHh
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNGKASQTAADVRVLNGVLQRF 81 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (181)
+|+|||++|+|.+|+.+||+.|+|++|.++++++.|+++.+. .+.+.+++ ...+.+.....+....++.+.+++.++
T Consensus 72 ~VewaK~iP~F~~L~~~DQi~LLk~~~~el~lL~~a~~~~~~--~~~~~~~g-~~~~~~~~~~~~~~~~~~~l~~~~~~l 148 (248)
T 3l0l_A 72 VVEFAKRLSGFMELCQNDQIVLLKAGAMEVVLVRMCRAYNAD--NRTVFFEG-KYGGMELFRALGCSELISSIFDFSHSL 148 (248)
T ss_dssp HHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHGGGGEETT--TTEEEETT-EEECGGGGGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCcccCCHHHHHHHHHHhHHHHHHHHHHHHhcCC--CCEEEeCC-CcccHHHHhhccHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999887654 33555543 344443333445677788899999999
Q ss_pred hhcCCChhhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHHhhhhhhhccchhhHHHHh
Q psy17882 82 RLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIF 161 (181)
Q Consensus 82 ~~l~l~~~E~~ll~ai~l~~pd~~~l~~~~~i~~~~~~~~~~L~~~~~~~~~~~~~r~~~Ll~~l~~lr~~~~~~~e~l~ 161 (181)
+++++|.+||+||||+++||||++|+++..+|+++|++|..+|++|+..+++ +.||++||++ |+||+++.++.|.++
T Consensus 149 ~~L~ld~~E~~lLkAivLfnpd~~gL~~~~~ve~lqe~~~~aL~~y~~~~~~--~~rf~~LLl~-p~LR~i~~~~~e~l~ 225 (248)
T 3l0l_A 149 SALHFSEDEIALYTALVLINAHRPGLQEKRKVEQLQYNLELAFHHHLCKTHR--QSILAKLPPK-GKLRSLCSQHVERLQ 225 (248)
T ss_dssp HTTCCCHHHHHHHHHHHHSCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHTTC--GGGGGGSCCT-THHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHHHHHHhhCh--HHHHHHhhcc-HHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998875 5799999999 999999999999999
Q ss_pred hccccCC----ccHHHHHHHHhc
Q psy17882 162 FAKTVAN----TSMEKLLCDMYK 180 (181)
Q Consensus 162 ~~~~~~~----~~~~~ll~e~l~ 180 (181)
+.+..|+ .+++||+.||+.
T Consensus 226 ~~k~~~p~~~~~~~p~Ll~Emf~ 248 (248)
T 3l0l_A 226 IFQHLHPIVVQAAFPPLYKELFS 248 (248)
T ss_dssp HHHHHCHHHHHHHSCHHHHHHHC
T ss_pred HHHhhCcccccCCCChHHHHhhC
Confidence 9999995 689999999984
No 47
>1z5x_E Ecdysone receptor ligand binding domain; ponasterone A, nuclear receptor, ECR, USP, hormone/growth factor receptor complex; HET: P1A; 3.07A {Bemisia tabaci}
Probab=100.00 E-value=1.9e-39 Score=247.07 Aligned_cols=176 Identities=22% Similarity=0.305 Sum_probs=157.0
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCCcccccCCCCCccchHHHHHHHHHHHHHh
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNGKASQTAADVRVLNGVLQRF 81 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (181)
+|+|||++|+|.+|+.+||+.|+|++|.++++++.|+++.+. .+.+.+++|..++.+.....+....++.+.+++.+|
T Consensus 132 ~VewAK~lP~F~~L~~~DQi~LLk~~w~el~lL~~a~rs~~~--~~~l~~~~g~~~~~~~~~~~g~~~~~~~i~~~~~~l 209 (310)
T 1z5x_E 132 IVEFSKRLPGFDKLIREDQIALLKACSSEVMMFRMARRYDAE--TDSILFATNQPYTRESYTVAGMGDTVEDLLRFCRHM 209 (310)
T ss_dssp HHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHTTEETT--TTEEECTTSCEECHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcchhhCCHHHHHHHHHHHHHHHHHHHHHHHhccC--CCeEEeCCCccccHHHHHhcchhHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999998764 447888888766543222234456778889999999
Q ss_pred hhcCCChhhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcC-CCCcchHHHHHhhhhhhhccchhhHHHH
Q psy17882 82 RLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHH-PAQPARFGRLLLMTSQCRNIPSARVQHI 160 (181)
Q Consensus 82 ~~l~l~~~E~~ll~ai~l~~pd~~~l~~~~~i~~~~~~~~~~L~~~~~~~~-~~~~~r~~~Ll~~l~~lr~~~~~~~e~l 160 (181)
+++++|.+||+|||||+||| |++|+++...|+++|++|..+|.+||..++ ++++.||++||++||.||.++.++.|.+
T Consensus 210 ~~L~ld~~E~alLkAIvLf~-d~~gL~~~~~Ve~lqe~~~~aL~~y~~~~~~~~~~~RF~kLLl~Lp~LR~l~~~~~e~l 288 (310)
T 1z5x_E 210 CAMKVDNAEYALLTAIVIFS-ERPSLSEGWKVEKIQEIYIEALKAYVENRRKPYATTIFAKLLSVLTELRTLGNMNSETC 288 (310)
T ss_dssp HHHTCCHHHHHHHHHHHHTC-CCTTCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHcC-CCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999997 999999999999999999999999999887 5789999999999999999999999999
Q ss_pred hhccccCCccHHHHHHHHhcC
Q psy17882 161 FFAKTVANTSMEKLLCDMYKN 181 (181)
Q Consensus 161 ~~~~~~~~~~~~~ll~e~l~~ 181 (181)
++.++.|. ++++|+.||+..
T Consensus 289 ~~~~~~~~-~~~~Ll~Eml~~ 308 (310)
T 1z5x_E 289 FSLKLKNR-KVPSFLEEIWDV 308 (310)
T ss_dssp HHHHHTTC-CCCHHHHHHHTC
T ss_pred HHHhcCCC-CchHHHHHHHcC
Confidence 99988764 999999999863
No 48
>1t7r_A Androgen receptor; nuclear receptor, transcription factor, ligand binding domain, AF-2, androgen, testosterone, DHT, alpha-helical sandwich; HET: DHT; 1.40A {Pan troglodytes} SCOP: a.123.1.1 PDB: 1t73_A* 1t76_A* 1t74_A* 1t79_A* 1t7m_A* 1t7f_A* 1t7t_A* 2am9_A* 2ama_A* 2amb_A* 2pnu_A* 1e3g_A* 2q7i_A* 1xj7_A* 2q7j_A* 3g0w_A* 2ihq_A* 2nw4_A* 1i37_A* 2q7k_A* ...
Probab=100.00 E-value=3.9e-40 Score=247.03 Aligned_cols=179 Identities=23% Similarity=0.359 Sum_probs=154.7
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCCcccccCCCCCccchHHHHHHHHHHHHHh
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNGKASQTAADVRVLNGVLQRF 81 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (181)
+|+|||++|+|.+|+.+||+.|+|++|.++++++.||++.+..+...+++++|..++++.....+.....+.+.+++.+|
T Consensus 65 ~VewAK~ip~F~~L~~~DQv~LLk~~w~el~iL~~a~rs~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~l 144 (269)
T 1t7r_A 65 VVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHKSRMYSQCVRMRHLSQEF 144 (269)
T ss_dssp HHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEETTEEECHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCccHhhCCHHHHHHHHHHhHHHHHHHHHHHHhcccCCCCeEEeCCCceecHHhhhhhhHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999887644446777777666543222223345667889999999
Q ss_pred hhcCCChhhhhhhhhhhhccC-CCCCCCCHHHHHHHHHHHHHHHHHHHhhcC---CCCcchHHHHHhhhhhhhccchhhH
Q psy17882 82 RLVGVDPAEFACLKAVVLFKS-ETRGLKDSLQVENLQDQAQVMLAQHVRTHH---PAQPARFGRLLLMTSQCRNIPSARV 157 (181)
Q Consensus 82 ~~l~l~~~E~~ll~ai~l~~p-d~~~l~~~~~i~~~~~~~~~~L~~~~~~~~---~~~~~r~~~Ll~~l~~lr~~~~~~~ 157 (181)
+++++|.+||+||||++|||| |++|+++...|+++|++|..+|.+||..++ ++++.||++||.++|.||+++..+.
T Consensus 145 ~~L~ld~~E~~lLkAIvLfnp~~~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~~~~Rf~~LL~~L~~Lr~l~~~~~ 224 (269)
T 1t7r_A 145 GWLQITPQEFLCMKALLLFSIIPVDGLKNQKFFDELRMNYIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPIARELH 224 (269)
T ss_dssp HHTTCCHHHHHHHHHHHHTSEEETTCCTTHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHcCCCccCCCccHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 899999999999999999999999998765 3678999999999999999999999
Q ss_pred HHHhhc--cc-cCCccHHHHHHHHhc
Q psy17882 158 QHIFFA--KT-VANTSMEKLLCDMYK 180 (181)
Q Consensus 158 e~l~~~--~~-~~~~~~~~ll~e~l~ 180 (181)
|.++.. +. .+.+++++++.||+.
T Consensus 225 e~lf~~~~~~~~~~~~~~~Ll~E~~~ 250 (269)
T 1t7r_A 225 QFTFDLLIKSHMVSVDFPEMMAEIIS 250 (269)
T ss_dssp HHHHHHHHTHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHhhcCCcChHHHHHHHHh
Confidence 998842 32 378899999999985
No 49
>3vhu_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, antagonist, spironolactone; HET: SNL; 2.11A {Homo sapiens}
Probab=100.00 E-value=9.2e-40 Score=247.12 Aligned_cols=179 Identities=21% Similarity=0.308 Sum_probs=151.9
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCCcccccCCCCCccchHHHHHHHHHHHHHh
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNGKASQTAADVRVLNGVLQRF 81 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (181)
+|+|||++|+|.+|+.+||+.|+|++|.++++++.|+++.+..+.+.+.+++|..++.+.....+..+..+.+.+++.++
T Consensus 90 ~VewAK~lP~F~~L~~~DQi~LLk~~~~el~lL~~a~rS~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~l 169 (294)
T 3vhu_A 90 VVKWAKVLPGFKNLPLEDQITLIQYSWMSLLSFALSWRSYKHTNSQFLYFAPDLVFNEEKMHQSAMYELCQGMHQISLQF 169 (294)
T ss_dssp HHHHHHTCTTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEETTEEECHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcchhhCCHHHHHHHHHHhHHHHHHHHHHHHhhhcCCCCeEEeCCCccccHHHhhcccHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999887655557778887766543222233456678889999999
Q ss_pred hhcCCChhhhhhhhhhhhccC-CCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCC---cchHHHHHhhhhhhhccchhhH
Q psy17882 82 RLVGVDPAEFACLKAVVLFKS-ETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQ---PARFGRLLLMTSQCRNIPSARV 157 (181)
Q Consensus 82 ~~l~l~~~E~~ll~ai~l~~p-d~~~l~~~~~i~~~~~~~~~~L~~~~~~~~~~~---~~r~~~Ll~~l~~lr~~~~~~~ 157 (181)
+++++|.+||+||||++|||| |++|+++..+|+++|++|..+|.+||..+++++ +.||++||.++|.||.++.++.
T Consensus 170 ~~L~ld~~EyalLkAIvLfnp~d~~gL~~~~~Ve~lQe~~~~aL~~y~~~~~~~~~~~~~RF~~LL~lLp~Lr~l~~~~~ 249 (294)
T 3vhu_A 170 VRLQLTFEEYTIMKVLLLLSTIPKDGLKSQAAFEEMRTNYIKELRKMVTKCPNNSGQSWQRFYQLTKLLDSMHDLVSDLL 249 (294)
T ss_dssp HHHTCCHHHHHHHHHHHHTSEEETTCCTTHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCCccHhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 999999999999999999999999999887754 6899999999999999999999
Q ss_pred HHHhhccc---cCCccHHHHHHHHhc
Q psy17882 158 QHIFFAKT---VANTSMEKLLCDMYK 180 (181)
Q Consensus 158 e~l~~~~~---~~~~~~~~ll~e~l~ 180 (181)
|.++|... .+.+++++|+.||+.
T Consensus 250 e~lff~~~q~~~~~~~~p~Ll~Ei~~ 275 (294)
T 3vhu_A 250 EFCFYTFRESHALKVEFPAMLVEIIS 275 (294)
T ss_dssp HHHHHHHHTHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHhhccCcCCCCHHHHHHHc
Confidence 99885433 345679999999985
No 50
>1pzl_A Hepatocyte nuclear factor 4-alpha; transcription; HET: MYR; 2.10A {Homo sapiens} SCOP: a.123.1.1 PDB: 3fs1_A* 1m7w_A* 1lv2_A*
Probab=100.00 E-value=1.5e-38 Score=234.67 Aligned_cols=178 Identities=28% Similarity=0.482 Sum_probs=159.4
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCCcccccCCCCCccchHHHH-HHHHHHHHH
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNGKASQTAADV-RVLNGVLQR 80 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 80 (181)
+|+|||++|+|.+|+.+||+.|+|++|.++++++.|+++.+. .+.+.+++|..++.......+..... +.+.+++.+
T Consensus 57 ~v~wak~~p~F~~L~~~DQ~~LLk~~~~~~~~L~~a~~s~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~ 134 (237)
T 1pzl_A 57 LVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVF--KDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLP 134 (237)
T ss_dssp HHHHHTTCHHHHTSCHHHHHHHHHHSHHHHHHHHHHHHHTTS--SSEEECTTSCEEESSCGGGGGGHHHHHHHHHHTHHH
T ss_pred HHHHHHhCcCcccCCHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCceeecCCcccCccchhhhhhHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999764 44677888877665433222333333 446789999
Q ss_pred hhhcCCChhhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHHhhhhhhhccchhhHHHH
Q psy17882 81 FRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHI 160 (181)
Q Consensus 81 l~~l~l~~~E~~ll~ai~l~~pd~~~l~~~~~i~~~~~~~~~~L~~~~~~~~~~~~~r~~~Ll~~l~~lr~~~~~~~e~l 160 (181)
++++++|.+||++|+|+++|+||++|+++..+|+++|+++..+|++|+..++|+++.||++||.++|.||+++..+.|.+
T Consensus 135 l~~L~ld~~E~~~L~ai~l~~~~~~~l~~~~~ve~~q~~~~~~L~~y~~~~~~~~~~Rf~~LL~~l~~lr~~~~~~~e~l 214 (237)
T 1pzl_A 135 FQELQIDDNEYAYLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQI 214 (237)
T ss_dssp HHHHTCCHHHHHHHHHHHHCCTTCTTCSCHHHHHHHHHHHHHHHHHHHHSSSSCCTTHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHhhCCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999899999999999999999999999999
Q ss_pred hhccccCCccHHHHHHHHhcC
Q psy17882 161 FFAKTVANTSMEKLLCDMYKN 181 (181)
Q Consensus 161 ~~~~~~~~~~~~~ll~e~l~~ 181 (181)
++.+++|.+++++++.||+++
T Consensus 215 ~~~~~~~~~~~~~l~~em~~~ 235 (237)
T 1pzl_A 215 QFIKLFGMAKIDNLLQEMLLG 235 (237)
T ss_dssp HHHHHTTCSCCCHHHHHHHTT
T ss_pred hhHHHhCCCcHHHHHHHHHcC
Confidence 999999999999999999974
No 51
>3n00_A REV-ERBA-alpha; reverba ncorid1, anti-parallel B-sheet, transcription regula; 2.60A {Homo sapiens}
Probab=100.00 E-value=7.2e-39 Score=236.91 Aligned_cols=162 Identities=21% Similarity=0.307 Sum_probs=137.1
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCCcccccCCCCCccchHHHHHHHHHHHHHh
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNGKASQTAADVRVLNGVLQRF 81 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (181)
+|+|||++|+|.+|+.+||+.|+|++|.++++++.|+++.. +.+.+.+++|..++.+.....+.....+.+.+++.+|
T Consensus 81 ~VewAK~lP~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~--~~~~l~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~l 158 (245)
T 3n00_A 81 VVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNV--KDQTVMFLSRTTYSLQELGAMGMGDLLSAMFDFSEKL 158 (245)
T ss_dssp HHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHTCCS--CC--------------CCGGGTTHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCeEEecCCCeecHHHHhhccHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999987443 3446777777777665544455677888899999999
Q ss_pred hhcCCChhhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHHhhhhhhhccchhhHHHHh
Q psy17882 82 RLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIF 161 (181)
Q Consensus 82 ~~l~l~~~E~~ll~ai~l~~pd~~~l~~~~~i~~~~~~~~~~L~~~~~~~~~~~~~r~~~Ll~~l~~lr~~~~~~~e~l~ 161 (181)
+++++|.+||+||||++|||||++|+++..+|+++|++|..+|.+||..++|+++.||++||.+||.||+++..+.|.++
T Consensus 159 ~~L~ld~~E~~lLkAIvL~npd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~RF~~LLl~Lp~LR~l~~~~~E~L~ 238 (245)
T 3n00_A 159 NSLALTEEELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPLETSRFTKLLLKLPDLRTLNNMHSEKLL 238 (245)
T ss_dssp HHTCCCHHHHHHHHHHHHHTSCCTTCSSHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTHHHHHHHHHHHHTTCEE
T ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hccc
Q psy17882 162 FAKT 165 (181)
Q Consensus 162 ~~~~ 165 (181)
++++
T Consensus 239 ~~k~ 242 (245)
T 3n00_A 239 SFRV 242 (245)
T ss_dssp EEEC
T ss_pred HhcC
Confidence 8765
No 52
>3up3_A Acedaf-12; ligand binding domain, nematode, steroid binding protein- transcription complex; HET: XCA; 1.25A {Ancylostoma ceylanicum} PDB: 3up0_A*
Probab=100.00 E-value=4.9e-39 Score=237.43 Aligned_cols=175 Identities=15% Similarity=0.169 Sum_probs=148.3
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCc--cccCCcccccCCCCC--ccchHH-HHHHHHH
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSP--LFNASEHVAAVPNGK--ASQTAA-DVRVLNG 76 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~ 76 (181)
+|+|||++|+|.+|+.+||+.|+|++|.|+++++.|+++.+..+ .. ..++++..++++..+ ..+... .++.+.+
T Consensus 57 ~VewAK~iP~F~~L~~~DQi~LLk~~w~Ell~L~~a~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~ 135 (243)
T 3up3_A 57 FVKMAKRLPAFNDLSQDGKFALLKGGMIEMLTVRGVRRFDSSSG-SWTTPTLGESSEVSINMFDQLNADVRSEQKMRFLQ 135 (243)
T ss_dssp HHHHHHHCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHEETTTT-EECCTTSCTTCCEEGGGGGGSCTTTHHHHHHHHHH
T ss_pred HHHHHhcCCCcccCCHHHHHHHHHHhHHHHHHHHHHHHhcccCC-eeeecccCCCccccHHHHhhhcccccHHHHHHHHH
Confidence 68999999999999999999999999999999999999876532 11 234555555433211 133344 5678899
Q ss_pred HHHHhhh-cCCChhhhhhhhhhhhccCCCCCCCCH---HHHHHHHHHHHHHHHHHHhhcC-CCCcchHHHHHhhhhhhhc
Q psy17882 77 VLQRFRL-VGVDPAEFACLKAVVLFKSETRGLKDS---LQVENLQDQAQVMLAQHVRTHH-PAQPARFGRLLLMTSQCRN 151 (181)
Q Consensus 77 ~~~~l~~-l~l~~~E~~ll~ai~l~~pd~~~l~~~---~~i~~~~~~~~~~L~~~~~~~~-~~~~~r~~~Ll~~l~~lr~ 151 (181)
++.+|++ +++|.+||+||+|++||||+ +|+++. .+|+++|++|..+|++||..+| |+++.||++||.++|+||+
T Consensus 136 ~~~~~~~~L~ld~~E~alLkAivLfsp~-~gL~~~~~~~~Ve~lQe~~~~aL~~y~~~~~~p~~~~rf~kLL~~Lp~LR~ 214 (243)
T 3up3_A 136 FFKIFHEDIRSNDLVISMIMLIVLFSPR-DSITDPEDRRIIARHHEQFSALLNRYLESLYGDDAHQLNEQLPTALRMLRE 214 (243)
T ss_dssp HHHTSCHHHHTCHHHHHHHHHHHHSCCC-TTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHhhcCCC-CCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence 9999997 99999999999999999999 999876 8999999999999999998776 7889999999999999999
Q ss_pred cchhhHHHHhhccccCCccHHHHHHHHhc
Q psy17882 152 IPSARVQHIFFAKTVANTSMEKLLCDMYK 180 (181)
Q Consensus 152 ~~~~~~e~l~~~~~~~~~~~~~ll~e~l~ 180 (181)
++. +.+.+++.+ .+..+++||+.||++
T Consensus 215 i~~-~~e~lf~~k-~~~~~~~pLl~E~f~ 241 (243)
T 3up3_A 215 ISA-SSGMLFLGT-VNTSEAEPLPREFFK 241 (243)
T ss_dssp HHH-TCTTTTTTS-CCGGGSCHHHHTTSC
T ss_pred HHH-HHHHHHhcc-cCCCCCCcHHHHHhC
Confidence 999 888888766 567799999999986
No 53
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=100.00 E-value=4.1e-38 Score=248.66 Aligned_cols=177 Identities=22% Similarity=0.316 Sum_probs=149.2
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCCcccccCCCC--CccchHHHHHHHHHHHH
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG--KASQTAADVRVLNGVLQ 79 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 79 (181)
+|+|||++|+|.+|+.+||+.|||++|.|++++..|..... .+.+...++....+... ...+....++.+.+++.
T Consensus 238 ~VewAK~iP~F~~L~~~DQi~LLk~~w~Ell~L~~a~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~f~~ 314 (419)
T 3dzy_D 238 ITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNK---DGVLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAV 314 (419)
T ss_dssp HHHHHTTSTTTTTSCHHHHHHHHHHHHHHHHHHHHGGGBCS---SEEEEGGGTEEEEHHHHHSSSGGGSGGGHHHHHHHH
T ss_pred HHHHhccCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHhcC---CCceeecCcccccHHHHHhhhhhHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999854432 22232222222222111 11223456678899999
Q ss_pred HhhhcCCChhhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHHhhhhhhhccchhhHHH
Q psy17882 80 RFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQH 159 (181)
Q Consensus 80 ~l~~l~l~~~E~~ll~ai~l~~pd~~~l~~~~~i~~~~~~~~~~L~~~~~~~~~~~~~r~~~Ll~~l~~lr~~~~~~~e~ 159 (181)
+|++|++|++||+||+|++||+||++|+++..+|+++|+++..+|++|+..++|+++.||++||++||+||.++..+.+.
T Consensus 315 ~l~~L~ld~~E~alLkAivLf~pD~~gL~~~~~Ve~lQe~~~~aL~~yi~~~~p~~~~rf~kLLl~Lp~LR~i~~~~~~~ 394 (419)
T 3dzy_D 315 KFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQL 394 (419)
T ss_dssp HHHHTCCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhc-cccCCccHHHHHHHHhcC
Q psy17882 160 IFFA-KTVANTSMEKLLCDMYKN 181 (181)
Q Consensus 160 l~~~-~~~~~~~~~~ll~e~l~~ 181 (181)
++++ ...+.+++++|+.||+++
T Consensus 395 l~~~k~~~~~~~l~~Ll~Em~~d 417 (419)
T 3dzy_D 395 LQVIKKTETDMSLHPLLQEIYKD 417 (419)
T ss_dssp HHHHTTSCSCCCCCHHHHHHHTT
T ss_pred HHHhhccCCCCCccHHHHHHHHh
Confidence 9655 567889999999999974
No 54
>3gyt_A Nuclear hormone receptor of the steroid/thyroid hormone receptors superfamily; nuclear receptor, ligand binding domain, dafachronic acid, nematode, DNA-binding, metal-binding, nucleus, receptor; HET: DL4; 2.40A {Strongyloides stercoralis} PDB: 3gyu_A*
Probab=100.00 E-value=8e-37 Score=225.02 Aligned_cols=173 Identities=17% Similarity=0.212 Sum_probs=136.7
Q ss_pred cccccccCCcCCCCChhhHHHHHHhhhhHHHHHHHHHHhcccCCCCccccCCcccccC--C---CCCccch----HHHHH
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAV--P---NGKASQT----AADVR 72 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~~~~~~il~~a~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~----~~~~~ 72 (181)
+|+|||++|+|.+|+.+||+.|+|++|.|+++++.|+++.+. .+.+.++++...+. . ....... ....+
T Consensus 57 iVefAK~iPgF~~L~~~DQi~LLK~~~~ElliLr~a~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 134 (244)
T 3gyt_A 57 LVKMAKRLGAFNEISEAGKFSLLKGGMIEMLTIRGVTVFNAD--KGVWQTPVDGHSQISFNMFDKLRPDIKDTQKKGFLH 134 (244)
T ss_dssp HHHHHHTCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTEETT--TTEECCTTSTTCCEEGGGGGGSCTTTHHHHHHHHHH
T ss_pred HHHHHccCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHhccc--CCeEeecCCcccchhHHHHHHhhhcchhhHHHHHHH
Confidence 589999999999999999999999999999999999987654 33555555421111 0 0011111 22334
Q ss_pred HHHHHHHHhhhcCCChhhhhhhhhhhhccCCCCCCC---CHHHHHHHHHHHHHHHHHHHhhcC-CCCcchHHHHHhhhhh
Q psy17882 73 VLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLK---DSLQVENLQDQAQVMLAQHVRTHH-PAQPARFGRLLLMTSQ 148 (181)
Q Consensus 73 ~~~~~~~~l~~l~l~~~E~~ll~ai~l~~pd~~~l~---~~~~i~~~~~~~~~~L~~~~~~~~-~~~~~r~~~Ll~~l~~ 148 (181)
.+.++...++. ++.||+||+|++|||||++|++ +..+|+++|+++..+|++|+..+| |+++.||++||.++|+
T Consensus 135 ~~~~f~~~l~~---~~~E~alLkAivLfspDr~gL~~~~d~~~Ve~lQe~~~~aL~~y~~~~~~p~~~~rf~kLL~~Lp~ 211 (244)
T 3gyt_A 135 FFNLLHSDVRK---NDLAIDIIVLMVLFDSKREGLVSQQDKETVEKLHRNYESLLHRYLYSIHKEEAEQRFASIPKALVA 211 (244)
T ss_dssp HHHHSCHHHHT---CHHHHHHHHHHHHSCTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---hHHHHHHHHHHHHHhccCCCCCccccHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHH
Confidence 44444444544 5669999999999999999999 689999999999999999999888 6888999999999999
Q ss_pred hhccchhhHHHHhhccccCCccHHHHHHHHhcC
Q psy17882 149 CRNIPSARVQHIFFAKTVANTSMEKLLCDMYKN 181 (181)
Q Consensus 149 lr~~~~~~~e~l~~~~~~~~~~~~~ll~e~l~~ 181 (181)
||+++..+.+ ++ .+..++.+++||+.||++.
T Consensus 212 LR~i~~~~~~-lf-~~~~~~~~~~pLl~Eif~~ 242 (244)
T 3gyt_A 212 LRKVAENAVT-LF-LGAGNTTEAASLPKEFFAT 242 (244)
T ss_dssp HHHHHHTTTT-TT-TTSCCCTTSCTTGGGTSCC
T ss_pred HHHHHHHHHH-HH-HhccCCccCCcHHHHHhCc
Confidence 9999999998 44 4556677899999999863
No 55
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=42.33 E-value=14 Score=23.23 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=18.0
Q ss_pred ccccCCcCCCCChhhHHHHHHh
Q psy17882 5 WAKNLPSFAALPFRDQVILLEE 26 (181)
Q Consensus 5 wak~~p~f~~L~~~dq~~Llk~ 26 (181)
-+..+++|.+|+.+||..+.+.
T Consensus 68 ~~~~I~G~~~L~~eDQ~~I~~~ 89 (114)
T 1v9x_A 68 SVDDVEGIESLRWEDQQKIRKY 89 (114)
T ss_dssp CGGGEETTTTSCHHHHHHHHHH
T ss_pred ChHHCCChHHCCHHHHHHHHHH
Confidence 3466899999999999887654
No 56
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=40.36 E-value=19 Score=22.68 Aligned_cols=21 Identities=10% Similarity=0.170 Sum_probs=17.2
Q ss_pred cccCCcCCCCChhhHHHHHHh
Q psy17882 6 AKNLPSFAALPFRDQVILLEE 26 (181)
Q Consensus 6 ak~~p~f~~L~~~dq~~Llk~ 26 (181)
+..++||.+|+.+||..+.+.
T Consensus 73 ~~~i~G~~~L~~eDQ~~I~~~ 93 (117)
T 1uw0_A 73 LTELEGWEELEDNEKEQITQH 93 (117)
T ss_dssp TSSSBSTTTSCHHHHHHHHHH
T ss_pred hHHCcChHHCCHHHHHHHHHH
Confidence 345899999999999887654
No 57
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=39.37 E-value=35 Score=21.97 Aligned_cols=28 Identities=18% Similarity=0.376 Sum_probs=24.5
Q ss_pred HHHHHHhhhcCCChhhhhhhhhhhhccC
Q psy17882 75 NGVLQRFRLVGVDPAEFACLKAVVLFKS 102 (181)
Q Consensus 75 ~~~~~~l~~l~l~~~E~~ll~ai~l~~p 102 (181)
..+...+++++++..|+.++-.+.-++.
T Consensus 19 ~~LL~~y~~LgLs~~E~~lLl~L~~~~~ 46 (135)
T 2v79_A 19 NLLLTHYKQLGLNETELILLLKIKMHLE 46 (135)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 4577889999999999999999998864
No 58
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=38.44 E-value=12 Score=23.51 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=17.2
Q ss_pred cccCCcCCCCChhhHHHHHHh
Q psy17882 6 AKNLPSFAALPFRDQVILLEE 26 (181)
Q Consensus 6 ak~~p~f~~L~~~dq~~Llk~ 26 (181)
+..++||.+|+.+||..+-+.
T Consensus 75 ~~~I~Gf~~L~~eDQe~Ikk~ 95 (111)
T 3odc_A 75 ASQLKGFSLLATEDKEALKKQ 95 (111)
T ss_dssp GGGEETGGGSCHHHHHHHHHH
T ss_pred HHhCCChHHCCHHHHHHHHHH
Confidence 345899999999999887663
No 59
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=34.24 E-value=19 Score=22.27 Aligned_cols=19 Identities=21% Similarity=0.379 Sum_probs=15.9
Q ss_pred cCCcCCCCChhhHHHHHHh
Q psy17882 8 NLPSFAALPFRDQVILLEE 26 (181)
Q Consensus 8 ~~p~f~~L~~~dq~~Llk~ 26 (181)
.+++|.+|+.+||..+.+.
T Consensus 77 ~i~G~~~L~~eDq~~i~~~ 95 (106)
T 2dmj_A 77 EVDGFSELRWDDQQKVKKT 95 (106)
T ss_dssp SEETTTTSCHHHHHHHHHH
T ss_pred hCCChHHCCHHHHHHHHHH
Confidence 4889999999999887553
No 60
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=28.56 E-value=26 Score=18.07 Aligned_cols=16 Identities=31% Similarity=0.312 Sum_probs=13.9
Q ss_pred cCCCCChhhHHHHHHh
Q psy17882 11 SFAALPFRDQVILLEE 26 (181)
Q Consensus 11 ~f~~L~~~dq~~Llk~ 26 (181)
.|++||.+-|..|+.+
T Consensus 20 VF~~LP~dIQ~Ells~ 35 (48)
T 2kwv_A 20 VFKQLPADIQEEILSG 35 (48)
T ss_dssp GTTTSCHHHHHHHTTC
T ss_pred HHHHCcHHHHHHHHhc
Confidence 6999999999988765
No 61
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.86 E-value=28 Score=22.58 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=17.2
Q ss_pred cccCCcCCCCChhhHHHHHHh
Q psy17882 6 AKNLPSFAALPFRDQVILLEE 26 (181)
Q Consensus 6 ak~~p~f~~L~~~dq~~Llk~ 26 (181)
+..+++|.+|+.+||..+.+.
T Consensus 83 ~~~I~Gf~~L~~eDQe~I~~~ 103 (134)
T 2cs2_A 83 ASQLKGFSLLATEDKEALKKQ 103 (134)
T ss_dssp GGGEETTTTSCHHHHHHHHTT
T ss_pred hHhCCChHHCCHHHHHHHHHH
Confidence 345899999999999887654
No 62
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=24.90 E-value=45 Score=20.47 Aligned_cols=25 Identities=16% Similarity=0.157 Sum_probs=20.3
Q ss_pred cccccccCCcCCCCChhhHHHHHHh
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEE 26 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~ 26 (181)
..++.+++|.|..|+.++...|...
T Consensus 4 ~~~~l~~~~~f~~l~~~~~~~l~~~ 28 (137)
T 1wgp_A 4 GSSGVRRVPLFENMDERLLDAICER 28 (137)
T ss_dssp CSCSCSSCSGGGSCCHHHHHHHHHH
T ss_pred hHHHHHcCcchhhCCHHHHHHHHHH
Confidence 4578899999999998887777665
No 63
>2ixm_A Serine/threonine-protein phosphatase 2A regulatory subunit B'; 2 PTPA, ppiase, hydrolase activator; 1.5A {Homo sapiens} SCOP: a.268.1.1 PDB: 2hv6_A 2hv7_A* 2g62_A
Probab=23.05 E-value=1.5e+02 Score=22.11 Aligned_cols=56 Identities=20% Similarity=0.232 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHhhhcCCChhhhhhhhhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCC-CCcchHHH
Q psy17882 68 AADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHP-AQPARFGR 141 (181)
Q Consensus 68 ~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~~pd~~~l~~~~~i~~~~~~~~~~L~~~~~~~~~-~~~~r~~~ 141 (181)
......+..+...++..+++. ....++.|+++. .+++.|.+++....| +.+.|||+
T Consensus 27 ~~i~~fI~~l~~sv~g~~~~~-----------------~~~~s~~v~~l~-~iL~~l~~~i~e~PP~~~p~RFGN 83 (303)
T 2ixm_A 27 ADYIGFILTLNEGVKGKKLTF-----------------EYRVSEAIEKLL-ALLNTLDRWIDETPPVDQPSRFGN 83 (303)
T ss_dssp HHHHHHHHHHHHHTTTCCTTC-----------------CCCCCHHHHHHH-HHHHHHHHHHHTSCCCCCSCSSSC
T ss_pred HHHHHHHHHHHHHhcCCCCCC-----------------CCCCCHHHHHHH-HHHHHHHHHHHhCCCCCCCCCcCC
Confidence 344455666666667666643 123356677766 678888888888777 66677665
No 64
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=21.16 E-value=35 Score=23.10 Aligned_cols=25 Identities=8% Similarity=0.284 Sum_probs=19.0
Q ss_pred ccccccCCcCCCCChhhHHHHHHhh
Q psy17882 3 VKWAKNLPSFAALPFRDQVILLEES 27 (181)
Q Consensus 3 v~wak~~p~f~~L~~~dq~~Llk~~ 27 (181)
+++.+++|.|..|+.++...+...+
T Consensus 2 ~~~l~~~~~f~~l~~~~~~~l~~~~ 26 (220)
T 3dv8_A 2 MSFENYFPLWNDLNTAQKKLISDNL 26 (220)
T ss_dssp ---CCSCGGGGTSCHHHHHHHHTTC
T ss_pred cchHHhChhhhcCCHHHHHHHHhhC
Confidence 6788999999999998888777654
No 65
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=20.24 E-value=79 Score=19.48 Aligned_cols=26 Identities=23% Similarity=0.114 Sum_probs=21.3
Q ss_pred cccccccCCcCCCCChhhHHHHHHhh
Q psy17882 2 AVKWAKNLPSFAALPFRDQVILLEES 27 (181)
Q Consensus 2 ~v~wak~~p~f~~L~~~dq~~Llk~~ 27 (181)
+.++.+.+|.|..++.++...+.+.+
T Consensus 3 m~~~l~~~~~f~~l~~~~~~~l~~~~ 28 (149)
T 2pqq_A 3 MDDVLRRNPLFAALDDEQSAELRASM 28 (149)
T ss_dssp GGGGGTSSTTTTTCCHHHHHHHHHHC
T ss_pred hHHHhhhChhhhcCCHHHHHHHHHhc
Confidence 35788999999999998887777664
Done!