RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17882
(181 letters)
>1pzl_A Hepatocyte nuclear factor 4-alpha; transcription; HET: MYR; 2.10A
{Homo sapiens} SCOP: a.123.1.1 PDB: 3fs1_A* 1m7w_A*
1lv2_A*
Length = 237
Score = 205 bits (523), Expect = 1e-67
Identities = 52/180 (28%), Positives = 87/180 (48%), Gaps = 1/180 (0%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
+ V+WAK +P+F LP DQV LL E LL A + S+ + L V
Sbjct: 56 VLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVF-KDVLLLGNDYIVPRHC 114
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
A + +R+L+ ++ F+ + +D E+A LKA++ F + +GL D +++ L+ Q
Sbjct: 115 PELAEMSRVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAKGLSDPGKIKRLRSQV 174
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
QV L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 175 QVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFGMAKIDNLLQEMLL 234
>2nxx_A Ultraspiracle (USP, NR2B4); hormone receptor, APO and holo ligand
binding pocket, hormone/growth factor complex; HET: P1A;
2.75A {Tribolium castaneum}
Length = 235
Score = 202 bits (516), Expect = 1e-66
Identities = 52/181 (28%), Positives = 93/181 (51%), Gaps = 1/181 (0%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
V+WAK +P F +LP DQV LL W+EL + S+ + + + V
Sbjct: 52 QLVQWAKLVPHFTSLPLTDQVQLLRAGWNELLIAAFSHRSMQA-QDAIVLATGLTVNKST 110
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
RVL+ ++ + + + +D E CL+A++L+ + RG+K +VE L+++
Sbjct: 111 AHAVGVGNIYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSVQEVEMLREKI 170
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
+L ++ RT HP +P RF +LLL R+I ++H+FF K + + ++ L +M +
Sbjct: 171 YGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDVPIDTFLMEMLE 230
Query: 181 N 181
Sbjct: 231 G 231
>1g2n_A Ultraspiracle protein; antiparallel alpha-helical sandwich,
structural proteomics in europe, spine, structural
genomics, gene regulation; HET: EPH; 1.65A {Heliothis
virescens} SCOP: a.123.1.1 PDB: 2r40_A* 1r20_A* 1r1k_A*
3ixp_A*
Length = 264
Score = 197 bits (503), Expect = 3e-64
Identities = 52/198 (26%), Positives = 89/198 (44%), Gaps = 17/198 (8%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
V WA+++P F+ L DQ++L++ SW+EL L S+ L
Sbjct: 57 ALVVWARDIPHFSQLEMEDQILLIKGSWNELLLFAIAWRSMEFLTEERDGVDGTGNRTTS 116
Query: 61 NGKASQTAAD-----------------VRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSE 103
+ RVL+ + + R + VD AE+ LKA++L +
Sbjct: 117 PPQLMCLMPGMTLHRNSALQAGVGQIFDRVLSELSLKMRTLRVDQAEYVALKAIILLNPD 176
Query: 104 TRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFA 163
+GLK+ +VE L+++ + L ++ R ++ RF LLL R+I +H+FF
Sbjct: 177 VKGLKNRQEVEVLREKMFLCLDEYCRRSRSSEEGRFAALLLRLPALRSISLKSFEHLFFF 236
Query: 164 KTVANTSMEKLLCDMYKN 181
VA+TS+ + D +N
Sbjct: 237 HLVADTSIAGYIRDALRN 254
>3cjw_A COUP transcription factor 2; COUP-TFII, nuclear receptor, ligand
binding domain, orphan receptor, three-layered helical
sandwich, DNA-binding; 1.48A {Homo sapiens}
Length = 244
Score = 196 bits (501), Expect = 3e-64
Identities = 71/181 (39%), Positives = 110/181 (60%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
AV+WA+N+P F L DQV LL +WSELF+LNA Q S+PL + L A H + +
Sbjct: 52 SAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMS 111
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+ +R+ +++ + + VD AE++CLKA+VLF S+ GL D VE+LQ+++
Sbjct: 112 ADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKS 171
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
Q L ++VR+ +P QP RFG+LLL R + S+ ++ +FF + V T +E L+ DM
Sbjct: 172 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLL 231
Query: 181 N 181
+
Sbjct: 232 S 232
>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear
receptor, structural proteomic europe, spine, structural
genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB:
1z5x_U* 2q60_A
Length = 282
Score = 198 bits (504), Expect = 3e-64
Identities = 58/181 (32%), Positives = 96/181 (53%), Gaps = 1/181 (0%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L HV
Sbjct: 98 TLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAV-KDGILLATGLHVHRNS 156
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 157 AHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKV 216
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M +
Sbjct: 217 YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLE 276
Query: 181 N 181
Sbjct: 277 A 277
>1ymt_A Steroidogenic factor 1; SF-1, ligand-binding domain, ligand,
phosphatidyl glycerol, CO-repressor peptide,
transcription; HET: DR9; 1.20A {Mus musculus} PDB:
3f7d_A* 1yp0_A* 1yow_A* 1zdt_A*
Length = 246
Score = 196 bits (501), Expect = 3e-64
Identities = 42/183 (22%), Positives = 80/183 (43%), Gaps = 3/183 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPL---FNASEHVA 57
V WA+ F L DQ+ LL+ SWSEL +L+ I + + + ++
Sbjct: 60 SIVDWARRCMVFKELEVADQMTLLQNSWSELLVLDHIYRQVQYGKEDSILLVTGQEVELS 119
Query: 58 AVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQ 117
V S + V ++ + + +D EF CLK ++LF + + L + V++ Q
Sbjct: 120 TVAVQAGSLLHSLVLRAQELVLQLHALQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQ 179
Query: 118 DQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCD 177
++A L + +H+P +F +LLL + R + ++++ LL +
Sbjct: 180 EKANAALLDYTLSHYPHSGDKFQQLLLSLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIE 239
Query: 178 MYK 180
M +
Sbjct: 240 MLQ 242
>2p1t_A Retinoic acid receptor RXR-alpha; protein-ligand complex, hormone
receptor; HET: 3TN; 1.80A {Homo sapiens} SCOP: a.123.1.1
PDB: 1mvc_A* 1mzn_A* 1mv9_A* 2p1u_A* 2p1v_A* 2zxz_A*
2zy0_A* 3fug_A* 3nsp_A 3nsq_A* 3r29_A 3r2a_A* 3r5m_A*
3e94_A* 3kwy_A* 1fby_A* 3uvv_B* 3fc6_A* 1rdt_A* 3fal_A*
...
Length = 240
Score = 195 bits (497), Expect = 9e-64
Identities = 58/181 (32%), Positives = 96/181 (53%), Gaps = 1/181 (0%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L HV
Sbjct: 56 TLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAV-KDGILLATGLHVHRNS 114
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 115 AHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKV 174
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M +
Sbjct: 175 YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLE 234
Query: 181 N 181
Sbjct: 235 A 235
>3plz_A FTZ-F1 related protein; alpha helical sandwhich, family five, TRAN
factor, transcription-receptor-agonist comple; HET: 470;
1.75A {Homo sapiens} PDB: 1yok_A* 1yuc_A* 4dor_A*
1zdu_A* 4dos_A* 1zh7_A 1pk5_A 3f5c_A
Length = 257
Score = 194 bits (496), Expect = 2e-63
Identities = 44/183 (24%), Positives = 83/183 (45%), Gaps = 3/183 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLF---NASEHVA 57
V+WA++ F L DQ+ LL+ WSEL +L+ I + + +F +
Sbjct: 71 SIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYS 130
Query: 58 AVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQ 117
+ + + + ++ + R + D EF CLK +VLF + + L++ VE +Q
Sbjct: 131 IIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQ 190
Query: 118 DQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCD 177
+Q L + ++P Q +FG+LLL + R I +++++ + LL +
Sbjct: 191 EQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIE 250
Query: 178 MYK 180
M
Sbjct: 251 MLH 253
>2e2r_A Estrogen-related receptor gamma; ERR gamma, BPA, nuclear receptor,
transcription; HET: 2OH; 1.60A {Homo sapiens} SCOP:
a.123.1.1 PDB: 2zas_A* 2zbs_A 2zkc_A* 2p7g_A* 1vjb_A*
1tfc_A 2p7a_A* 2p7z_A* 2gpu_A* 1kv6_A 2gp7_A 2gpp_A*
2gpo_A* 2gpv_A* 1s9q_A* 1s9p_A* 2ewp_A*
Length = 244
Score = 194 bits (495), Expect = 2e-63
Identities = 45/180 (25%), Positives = 86/180 (47%), Gaps = 2/180 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
+ + WAK++P F+ L DQ+ LL+ +W E+ +L + SL E ++ A +++
Sbjct: 63 VIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSF-EDELVY-ADDYIMDED 120
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
K + + ++++++ + ++ EF LKA+ L S++ ++D V+ LQD
Sbjct: 121 QSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVL 180
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
L + H P R G++L+ R + VQH + K M KL +M +
Sbjct: 181 HEALQDYEAGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGKVPMHKLFLEMLE 240
>2iz2_A FTZ-F1 alpha, nuclear hormone receptor FTZ-F1; nuclear protein,
phosphorylation, PAIR-RULE protein; 2.8A {Drosophila
melanogaster} PDB: 2xhs_A
Length = 243
Score = 191 bits (487), Expect = 3e-62
Identities = 34/180 (18%), Positives = 70/180 (38%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
V WA+N F L DQ+ LL+ SWS++ +L+ + + + V +
Sbjct: 61 SQVDWARNTVFFKDLKVDDQMKLLQHSWSDMLVLDHLHHRIHNGLPDETQLNNGQVFNLM 120
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+ N + + + + D ++ C+K ++L RG+ + V D
Sbjct: 121 SLGLLGVPQLGDYFNELQNKLQDLKFDMGDYVCMKFLILLNPSVRGIVNRKTVSEGHDNV 180
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
Q L + T +P+ +F L+ + + + H++ + + LL +M
Sbjct: 181 QAALLDYTLTCYPSVNDKFRGLVNILPEIHAMAVRGEDHLYTKHCAGSAPTQTLLMEMLH 240
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin,
armadillo repeat, nuclear receptor LIGA binding domain,
protein binding; HET: P6L; 2.76A {Homo sapiens}
Length = 352
Score = 193 bits (491), Expect = 2e-61
Identities = 44/183 (24%), Positives = 83/183 (45%), Gaps = 3/183 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLF---NASEHVA 57
V+WA++ F L DQ+ LL+ WSEL +L+ I + + +F +
Sbjct: 166 SIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYS 225
Query: 58 AVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQ 117
+ + + + ++ + R + D EF CLK +VLF + + L++ VE +Q
Sbjct: 226 IIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQ 285
Query: 118 DQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCD 177
+Q L + ++P Q +FG+LLL + R I +++++ + LL +
Sbjct: 286 EQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIE 345
Query: 178 MYK 180
M
Sbjct: 346 MLH 348
>3p0u_A Nuclear receptor subfamily 2 group C member 2; ligand binding
domain, orphan nuclear receptor, testicular R 4,
signaling protein; 3.00A {Homo sapiens}
Length = 249
Score = 187 bits (477), Expect = 1e-60
Identities = 46/187 (24%), Positives = 84/187 (44%), Gaps = 6/187 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNA------SE 54
+++ WA+++P+F AL L+ W+ELF L Q + + S+ L S
Sbjct: 49 LSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSI 108
Query: 55 HVAAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVE 114
+ + Q + L + +D E+A LKA+VLF + GL + Q+E
Sbjct: 109 QEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIE 168
Query: 115 NLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKL 174
Q+ AQ+ L +V+ + R R+L+ R + S + +FF + N S++ +
Sbjct: 169 KFQEAAQMELQDYVQATYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSI 228
Query: 175 LCDMYKN 181
+ + K
Sbjct: 229 IPYILKM 235
>3ltx_A Estrogen receptor; constitutive, nuclear receptor, DNA-binding,
metal-binding, nucleus, transcription, transcription
regulation, zinc-finger; 2.60A {Crassostrea gigas}
Length = 243
Score = 185 bits (471), Expect = 1e-59
Identities = 42/178 (23%), Positives = 69/178 (38%), Gaps = 1/178 (0%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
+ WAKN+P + L DQV L+E W EL LLN S+ L A + V
Sbjct: 51 HLINWAKNVPGYTDLSLSDQVHLIECCWMELLLLNCAFRSIEH-GGKSLAFAPDLVLDRS 109
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+ + + V ++ + E L+A+VL +E R L Q+ N+Q
Sbjct: 110 SWSTVEMTEIFEQVAAVSEQMMQNHLHKDELLLLQAMVLVNAEVRRLASYNQIFNMQQSL 169
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
+ + +HP +LL+ + R + K+ + LL +M
Sbjct: 170 LDAIVDTAQKYHPDNVRHVPAVLLLLTHIRQAGERGIAFFQRLKSEGVVTFCDLLKEM 227
>3k6p_A Steroid hormone receptor ERR1; estrogen related receptor alpha,
DNA-binding, isopeptide BON binding, nucleus,
phosphoprotein, transcription; HET: 5FB; 2.00A {Homo
sapiens} PDB: 1xb7_A 2pjl_A* 3d24_A
Length = 248
Score = 184 bits (470), Expect = 2e-59
Identities = 48/184 (26%), Positives = 86/184 (46%), Gaps = 6/184 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
+ + WAK++P F++L DQ+ +L+ W E+ +L Q SLP L+ F A + V
Sbjct: 63 VTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSLP-LQDELAF-AEDLVLDEE 120
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+A+ L +++R + + ++ E+ LKA+ L S++ ++D+ VE L++
Sbjct: 121 GARAAGLGELGAALLQLVRRLQALRLEREEYVLLKALALANSDSVHIEDAEAVEQLREAL 180
Query: 121 QVMLAQHVRTHH----PAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
L ++ A+ R GRLLL R + H + K M KL
Sbjct: 181 HEALLEYEAGRAGPGGGAERRRAGRLLLTLPLLRQTAGKVLAHFYGVKLEGKVPMHKLFL 240
Query: 177 DMYK 180
+M +
Sbjct: 241 EMLE 244
>1hg4_A Ultraspiracle; nuclear hormone receptor, transcription factor,
ligand binding; HET: LPP; 2.4A {Drosophila melanogaster}
SCOP: a.123.1.1
Length = 279
Score = 181 bits (461), Expect = 7e-58
Identities = 52/207 (25%), Positives = 92/207 (44%), Gaps = 26/207 (12%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSP------------ 48
V++A+ +P FA +P DQVILL+ +W EL + N S+ L+
Sbjct: 62 QMVEYARMMPHFAQVPLDDQVILLKAAWIELLIANVAWCSIVSLDDGGAGGGGGGLGHDG 121
Query: 49 --------------LFNASEHVAAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACL 94
N S KA +A R+L+ + + + + +D E +CL
Sbjct: 122 SFERRSPGLQPQQLFLNQSFSYHRNSAIKAGVSAIFDRILSELSVKMKRLNLDRRELSCL 181
Query: 95 KAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPS 154
KA++L+ + RG+K ++E +++ L +H R HP RF +LLL R+I
Sbjct: 182 KAIILYNPDIRGIKSRAEIEMCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSISL 241
Query: 155 ARVQHIFFAKTVANTSMEKLLCDMYKN 181
H+F + ++ +E+L + +
Sbjct: 242 KCQDHLFLFRITSDRPLEELFLEQLEA 268
>1ovl_A Orphan nuclear receptor NURR1 (MSe 414, 496, 511); NUUR1, LBD,
transcription; 2.20A {Homo sapiens} SCOP: a.123.1.1
Length = 271
Score = 176 bits (449), Expect = 5e-56
Identities = 42/183 (22%), Positives = 81/183 (44%), Gaps = 6/183 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
+ WA+ +P FA LP DQ +L E ++ ELF+L S P +E +F +
Sbjct: 89 IIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNP-VEGKLIFCNGVVLH--R 145
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+ + + + +D + F+C+ A+ + +E GLK+ +VE LQ++
Sbjct: 146 LQCVRGFGEWIDSIVEFSSNLQNMNIDISAFSCIAALAMV-TERHGLKEPKRVEELQNKI 204
Query: 121 QVMLAQHVRTHHPA--QPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L HV ++ +P +LL + R + + +Q IF+ K ++ +
Sbjct: 205 VNCLKDHVTFNNGGLNRPNYLSKLLGKLPELRTLCTQGLQRIFYLKLEDLVPPPAIIDKL 264
Query: 179 YKN 181
+ +
Sbjct: 265 FLD 267
>3oll_A Estrogen receptor beta; steroid binding, phosphorylation, hormone
receptor-activator; HET: PTR EST; 1.50A {Homo sapiens}
PDB: 1u3s_A* 1u3q_A* 1x78_A* 1x7b_A* 1x7j_A* 1x76_A*
2yjd_A* 3ols_A* 3omo_A* 3omp_A* 3omq_A* 1u3r_A* 1u9e_A*
1qkm_A* 2giu_A* 1nde_A* 2jj3_A* 2i0g_A* 2qtu_A* 2z4b_A*
...
Length = 240
Score = 174 bits (444), Expect = 1e-55
Identities = 41/190 (21%), Positives = 70/190 (36%), Gaps = 11/190 (5%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
+ WAK +P F L DQV LLE W E+ ++ + S+ +F +
Sbjct: 48 HMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSID-HPGKLIFAPDLVLDRDE 106
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ- 119
+L RFR + + E+ C+KA++L S L + Q + +
Sbjct: 107 GKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMYPLVTATQDADSSRKL 166
Query: 120 ---------AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTS 170
A V + Q R LL++ S R+ + ++H+ K
Sbjct: 167 AHLLNAVTDALVWVIAKSGISSQQQSMRLANLLMLLSHVRHASNKGMEHLLNMKCKNVVP 226
Query: 171 MEKLLCDMYK 180
+ LL +M
Sbjct: 227 VYDLLLEMLN 236
>1yje_A Orphan nuclear receptor NR4A1; NGFI-B, NUR77, ligand-binding
domain, novel coregulator interface, cell-specific;
2.40A {Rattus norvegicus} PDB: 2qw4_A
Length = 264
Score = 175 bits (445), Expect = 2e-55
Identities = 48/183 (26%), Positives = 81/183 (44%), Gaps = 6/183 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
+ KWA+ +P F L DQ +LLE ++ ELF+L S P E +F + +
Sbjct: 82 VIRKWAEKIPGFIELSPGDQDLLLESAFLELFILRLAYRSKP-GEGKLIFCSGLVLH--R 138
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
A + + + +GVD FACL A+VL ++ GL+D +VE LQ++
Sbjct: 139 LQCARGFGDWIDNILAFSRSLHSLGVDVPAFACLSALVLI-TDRHGLQDPRRVEELQNRI 197
Query: 121 QVMLAQHVRT--HHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L +H+ P + RLL + R + + +Q IF K ++ +
Sbjct: 198 ASCLKEHMAAVAGDPQPASCLSRLLGKLPELRTLCTQGLQRIFCLKLEDLVPPPPIVDKI 257
Query: 179 YKN 181
+ +
Sbjct: 258 FMD 260
>2ocf_A Estrogen receptor; estrogen receptor, LBD, monobody, estradiol,
hormone-growth complex; HET: CME EST; 2.95A {Homo
sapiens}
Length = 298
Score = 171 bits (435), Expect = 1e-53
Identities = 43/192 (22%), Positives = 78/192 (40%), Gaps = 12/192 (6%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
+ WAK +P F L DQV LLE +W E+ ++ + S+ LF + +
Sbjct: 59 HMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME-HPGKLLFAPNLLLDRNQ 117
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKS--------ETRGLKDSLQ 112
+L RFR++ + EF CLK+++L S + L++
Sbjct: 118 GKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEEKDH 177
Query: 113 VENLQDQAQVMLAQHV---RTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANT 169
+ + D+ L + Q R +LLL+ S R++ + ++H++ K
Sbjct: 178 IHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCKNVV 237
Query: 170 SMEKLLCDMYKN 181
+ LL +M
Sbjct: 238 PLSDLLLEMLDA 249
>1xpc_A Estrogen receptor; nuclear receptor, transcription factor,
ER-alpha, antagonist hormone-growth factor receptor
complex; HET: AIT; 1.60A {Homo sapiens} SCOP: a.123.1.1
PDB: 1sj0_A* 1xp1_A* 1xp9_A* 1xp6_A* 1yim_A* 1yin_A*
3ert_A* 1r5k_A* 3erd_A* 1l2i_A* 2iok_A* 1a52_A* 2ouz_A*
1ere_A* 1err_A* 2qxs_A* 3q95_A* 3q97_A* 2b1z_A* 1zky_A*
...
Length = 248
Score = 169 bits (429), Expect = 2e-53
Identities = 43/189 (22%), Positives = 78/189 (41%), Gaps = 12/189 (6%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
+ WAK +P F L DQV LLE +W E+ ++ + S+ LF + +
Sbjct: 50 HMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME-HPGKLLFAPNLLLDRNQ 108
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKS--------ETRGLKDSLQ 112
+L RFR++ + EF CLK+++L S + L++
Sbjct: 109 GKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEEKDH 168
Query: 113 VENLQDQAQVMLAQHV---RTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANT 169
+ + D+ L + Q R +LLL+ S R++ + ++H++ K
Sbjct: 169 IHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCKNVV 228
Query: 170 SMEKLLCDM 178
+ LL +M
Sbjct: 229 PLYDLLLEM 237
>1pdu_A DHR38, nuclear hormone receptor HR38; nuclear receptor,
ligand-binding domain, hormone/growth factor receptor
complex; 2.30A {Drosophila melanogaster} SCOP: a.123.1.1
Length = 244
Score = 160 bits (406), Expect = 6e-50
Identities = 41/183 (22%), Positives = 77/183 (42%), Gaps = 6/183 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
+ ++A+ +P + L DQ +L + + ELF+L + ++ +F +
Sbjct: 62 VIKQFAEKIPGYFDLLPEDQELLFQSASLELFVLRLAYRARI-DDTKLIFCNGTVLH--R 118
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+ + + + +D + FACL A+ L +E GL++ +VE LQ +
Sbjct: 119 TQCLRSFGEWLNDIMEFSRSLHNLEIDISAFACLCALTLI-TERHGLREPKKVEQLQMKI 177
Query: 121 QVMLAQHVRTHHPAQP--ARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L HV + AQ F RLL + R++ +Q IF+ K L+ +M
Sbjct: 178 IGSLRDHVTYNAEAQKKQHYFSRLLGKLPELRSLSVQGLQRIFYLKLEDLVPAPALIENM 237
Query: 179 YKN 181
+
Sbjct: 238 FVT 240
>3u9q_A Peroxisome proliferator-activated receptor gamma; nuclear receptor,
adipogenesis, RXRA, nucleus, transcription; HET: DKA;
1.52A {Homo sapiens} PDB: 1i7i_A* 3ty0_A* 1zeo_A*
2p4y_A* 3et3_A* 3et0_A* 2hwq_A* 2ath_A* 2f4b_A* 2g0g_A*
2g0h_A* 2gtk_A* 2fvj_A* 2hwr_A* 2prg_A* 2q8s_A* 3fej_A*
3g9e_A* 3gbk_A* 3ia6_A* ...
Length = 269
Score = 161 bits (408), Expect = 6e-50
Identities = 40/184 (21%), Positives = 75/184 (40%), Gaps = 6/184 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
++AK++P F L DQV LL+ E+ L + +
Sbjct: 88 EITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNK---DGVLISEGQGFMTRE 144
Query: 61 NGKASQTAAD--VRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQD 118
K+ + + +F + +D ++ A AV++ + GL + +E++QD
Sbjct: 145 FLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQD 204
Query: 119 QAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIF-FAKTVANTSMEKLLCD 177
L ++ +HP F +LL + R I + VQ + KT + S+ LL +
Sbjct: 205 NLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPLLQE 264
Query: 178 MYKN 181
+YK+
Sbjct: 265 IYKD 268
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 166 bits (421), Expect = 7e-50
Identities = 58/181 (32%), Positives = 96/181 (53%), Gaps = 1/181 (0%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L HV
Sbjct: 283 TLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAV-KDGILLATGLHVHRNS 341
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 342 AHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKV 401
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M +
Sbjct: 402 YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLE 461
Query: 181 N 181
Sbjct: 462 A 462
>1yye_A ER-beta, estrogen receptor beta; ER-beta, nuclear receptor,
transcription factor, agonist; HET: 196; 2.03A {Homo
sapiens} SCOP: a.123.1.1 PDB: 1yy4_A*
Length = 268
Score = 160 bits (407), Expect = 9e-50
Identities = 41/191 (21%), Positives = 70/191 (36%), Gaps = 11/191 (5%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
+ WAK +P F L DQV LLE W E+ ++ + S+ +F +
Sbjct: 46 HMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSID-HPGKLIFAPDLVLDRDE 104
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ- 119
+L RFR + + E+ C+KA++L S L + Q + +
Sbjct: 105 GKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMYPLVTATQDADSSRKL 164
Query: 120 ---------AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTS 170
A V + Q R LL++ S R+ + ++H+ K
Sbjct: 165 AHLLNAVTDALVWVIAKSGISSQQQSMRLANLLMLLSHVRHASNKGMEHLLNMKCKNVVP 224
Query: 171 MEKLLCDMYKN 181
+ LL +M
Sbjct: 225 VYDLLLEMLNA 235
>3f5c_B Nuclear receptor subfamily 0 group B member 1; transcriptional
corepressor, regulatory complex, DNA-binding,
lipid-binding, metal-binding; 3.00A {Mus musculus}
Length = 268
Score = 160 bits (405), Expect = 1e-49
Identities = 45/202 (22%), Positives = 74/202 (36%), Gaps = 24/202 (11%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPL----------------- 43
+++ K LP F LP Q++L+ W+ L +L Q L
Sbjct: 62 KTLRFVKYLPCFQILPLDQQLVLVRSCWAPLLMLELAQDHLHFEMMEIPETNTTQEMLTT 121
Query: 44 -------LESSPLFNASEHVAAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKA 96
E + + AA V+ + + + +D E+A LK
Sbjct: 122 RRQETEGPEPAEPQATEQPQMVSAEAGHLLPAAAVQAIKSFFFKCWSLNIDTKEYAYLKG 181
Query: 97 VVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSAR 156
VLF + GL+ +E LQ + Q +L +H+R R L R I S
Sbjct: 182 TVLFNPDLPGLQCVKYIEGLQWRTQQILTEHIRMMQREYQIRSAELNSALFLLRFINSDV 241
Query: 157 VQHIFFAKTVANTSMEKLLCDM 178
V +FF + SM+ ++ +M
Sbjct: 242 VTELFFRPIIGAVSMDDMMLEM 263
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding,
HOST-virus interaction, metal-binding, nucleus,
receptor, transcription, transcription regulation,
zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo
sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Length = 419
Score = 164 bits (415), Expect = 2e-49
Identities = 41/185 (22%), Positives = 76/185 (41%), Gaps = 8/185 (4%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLP---LLESSPLFNASEHVA 57
++AK++P F L DQV LL+ E+ L+ F E +
Sbjct: 237 EITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTREFLK 296
Query: 58 AVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQ 117
++ + +F + +D ++ A AV++ + GL + +E++Q
Sbjct: 297 SLRKPFGDF----MEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQ 352
Query: 118 DQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAK-TVANTSMEKLLC 176
D L ++ +HP F +LL + R I + VQ + K T + S+ LL
Sbjct: 353 DNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPLLQ 412
Query: 177 DMYKN 181
++YK+
Sbjct: 413 EIYKD 417
>1t7r_A Androgen receptor; nuclear receptor, transcription factor, ligand
binding domain, AF-2, androgen, testosterone, DHT,
alpha-helical sandwich; HET: DHT; 1.40A {Pan
troglodytes} SCOP: a.123.1.1 PDB: 1t73_A* 1t76_A*
1t74_A* 1t79_A* 1t7m_A* 1t7f_A* 1t7t_A* 2am9_A* 2ama_A*
2amb_A* 2pnu_A* 1e3g_A* 2q7i_A* 1xj7_A* 2q7j_A* 3g0w_A*
2ihq_A* 2nw4_A* 1i37_A* 2q7k_A* ...
Length = 269
Score = 154 bits (390), Expect = 3e-47
Identities = 42/188 (22%), Positives = 76/188 (40%), Gaps = 7/188 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
VKWAK LP F L DQ+ +++ SW L + S + S L+ A + V
Sbjct: 64 HVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEY 123
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKS-ETRGLKDSLQVENLQDQ 119
S+ + + + Q F + + P EF C+KA++LF GLK+ + L+
Sbjct: 124 RMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKNQKFFDELRMN 183
Query: 120 AQVMLAQHV---RTHHPAQPARFGRLLLMTSQCRNIPSARVQHIF---FAKTVANTSMEK 173
L + + R + + RF +L + + I Q F + + +
Sbjct: 184 YIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPIARELHQFTFDLLIKSHMVSVDFPE 243
Query: 174 LLCDMYKN 181
++ ++
Sbjct: 244 MMAEIISV 251
>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling,
alternative DNA-binding, metal-binding, nucleus,
polymorphism, receptor transcription; HET: 965; 2.00A
{Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B*
1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A*
1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*
Length = 283
Score = 154 bits (391), Expect = 3e-47
Identities = 47/179 (26%), Positives = 76/179 (42%), Gaps = 2/179 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
V +AK LP F L DQ+ LL+ S E+ LL + P S F
Sbjct: 103 EIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPG-SESITFLKDFSYNRED 161
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
KA + + + + ++ AEFA L A+ +F ++ ++D LQVE LQ
Sbjct: 162 FAKAGLQVEFINPIFEFSRAMNELQLNDAEFALLIAISIFSADRPNVQDQLQVERLQHTY 221
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
L +V HHP F R+L+ R + S + +F + + + LL +++
Sbjct: 222 VEALHAYVSIHHPHDRLMFPRMLMKLVSLRTLSSVHSEQVFALRLQ-DKKLPPLLSEIW 279
>1xvp_B Orphan nuclear receptor NR1I3; CAR, RXR, citco, SRC1, DNA binding
protein; HET: F15 CID; 2.60A {Homo sapiens} SCOP:
a.123.1.1 PDB: 1xv9_B* 1xnx_A* 1xls_E*
Length = 246
Score = 153 bits (388), Expect = 4e-47
Identities = 33/181 (18%), Positives = 73/181 (40%), Gaps = 6/181 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
+K+ K+LP F +LP DQ+ LL+ + E+ + ++
Sbjct: 69 QVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCL--QTQNFLCGPLRYTIED 126
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+ + +L R + + E+ L A+ LF + G+ +++ LQ++
Sbjct: 127 GARVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPDRPGVTQRDEIDQLQEEM 186
Query: 121 QVMLAQHVRTHH--PAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
+ L +++ P + +LL + ++ R+I A I + ++M LL ++
Sbjct: 187 ALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQG--LSAMMPLLQEI 244
Query: 179 Y 179
Sbjct: 245 C 245
>1fcy_A RAR-gamma-1, retinoic acid receptor gamma-1; isotype selectivity,
retinoid ligand complexes, drug design, antiparallel
alpha-helical sandwich fold; HET: 564 LMU; 1.30A {Homo
sapiens} SCOP: a.123.1.1 PDB: 1fcz_A* 1fcx_A* 1fd0_A*
1exa_A* 1exx_A* 1dkf_B*
Length = 236
Score = 152 bits (386), Expect = 6e-47
Identities = 37/180 (20%), Positives = 71/180 (39%), Gaps = 2/180 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
V++AK LP F L DQ+ LL+ + ++ +L P + + F +
Sbjct: 59 KIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPE-QDTMTF-SDGLTLNRT 116
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+ ++ + + +D E L A+ L + L++ +V+ LQ+
Sbjct: 117 QMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPL 176
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
L + R P+QP F R+L+ + R I + + K M L+ +M +
Sbjct: 177 LEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPMPPLIREMLE 236
>1l2j_A Estrogen receptor beta; nuclear receptor, transcription factor,
antagonist transcription receptor; HET: ETC; 2.95A {Homo
sapiens} SCOP: a.123.1.1
Length = 271
Score = 150 bits (380), Expect = 1e-45
Identities = 41/190 (21%), Positives = 70/190 (36%), Gaps = 11/190 (5%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
+ WAK +P F L DQV LLE W E+ ++ + S+ +F +
Sbjct: 74 HMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSID-HPGKLIFAPDLVLDRDE 132
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ- 119
+L RFR + + E+ C+KA++L S L + Q + +
Sbjct: 133 GKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMYPLVTATQDADSSRKL 192
Query: 120 ---------AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTS 170
A V + Q R LL++ S R+ + ++H+ K
Sbjct: 193 AHLLNAVTDALVWVIAKSGISSQQQSMRLANLLMLLSHVRHASNKGMEHLLNMKCKNVVP 252
Query: 171 MEKLLCDMYK 180
+ LL +M
Sbjct: 253 VYDLLLEMLN 262
>3mnp_A Glucocorticoid receptor; protein-ligand complex, steroid nuclear
receptor, mouse GR, hormone receptor; HET: DEX; 1.50A
{Mus musculus} PDB: 3mno_A* 3mne_A* 1m2z_A* 3k22_A*
3cld_A* 3k23_A* 3e7c_A* 1nhz_A* 1p93_A* 3bqd_A* 3h52_A*
3gn8_A* 4e2j_A*
Length = 261
Score = 148 bits (374), Expect = 7e-45
Identities = 36/187 (19%), Positives = 70/187 (37%), Gaps = 6/187 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
AVKWAK +P F L DQ+ LL+ SW L + S + L A + +
Sbjct: 57 AAVKWAKAIPGFRNLHLDDQMTLLQYSWMFLMVFALGWRSYRQASGNLLCFAPDLIINEQ 116
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETR-GLKDSLQVENLQDQ 119
+ + + + + V E+ C+K ++L S + GLK + ++
Sbjct: 117 RMTLPCMYDQCKHMLFISTELQRLQVSYEEYLCMKTLLLLSSVPKEGLKSQELFDEIRMT 176
Query: 120 AQVMLAQHVRT---HHPAQPARFGRLLLMTSQCRNIPSARVQHIF--FAKTVANTSMEKL 174
L + + + RF +L + ++ + + F F + ++
Sbjct: 177 YIKELGKAIAKRGGNSSQNWQRFYQLTKLLDSMHDVVENLLSYCFQTFLDKSMSIEFPEM 236
Query: 175 LCDMYKN 181
L ++ N
Sbjct: 237 LAEIITN 243
>2hc4_A Vitamin D receptor; alpha helical sandwich, gene regulation; HET:
VDX; 2.20A {Danio rerio} PDB: 2hbh_A* 2hcd_A* 3dr1_A*
3o1d_A* 3o1e_A*
Length = 302
Score = 147 bits (372), Expect = 3e-44
Identities = 34/181 (18%), Positives = 71/181 (39%), Gaps = 2/181 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
+ +AK +P F L DQ+ LL+ S E+ +L + Q S
Sbjct: 117 KVIGFAKMIPGFRDLTAEDQIALLKSSAIEIIMLRSNQSFSLEDMSWSCGGPDFKYCIND 176
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
KA T + L + + + E L A+ L + G++D +++E LQD+
Sbjct: 177 VTKAGHTLELLEPLVKFQVGLKKLKLHEEEHVLLMAICLLSPDRPGVQDHVRIEALQDRL 236
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAK--TVANTSMEKLLCDM 178
+L ++R HP + +++ + R++ + + + L+ ++
Sbjct: 237 CDVLQAYIRIQHPGGRLLYAKMIQKLADLRSLNEEHSKQYRSLSFQPEHSMQLTPLVLEV 296
Query: 179 Y 179
+
Sbjct: 297 F 297
>3kmr_A Retinoic acid receptor alpha; nuclear receptor transcription factor
ligand binding domain, binding, metal-binding, nucleus,
phosphoprotein; HET: EQN; 1.80A {Homo sapiens} PDB:
3kmz_B* 3a9e_B* 4dm6_A* 1xap_A* 4dm8_A* 2lbd_A* 3lbd_A*
4lbd_A*
Length = 266
Score = 145 bits (368), Expect = 6e-44
Identities = 41/184 (22%), Positives = 79/184 (42%), Gaps = 8/184 (4%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
V++AK LP F L DQ+ LL+ + ++ +L P + + F+ +
Sbjct: 83 KTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPE-QDTMTFSDGLTLNRTQ 141
Query: 61 NGKASQTAADVRVLNGVLQ---RFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQ 117
A + + V + + +D AE L A+ L + + L+ +V+ LQ
Sbjct: 142 ----MHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQ 197
Query: 118 DQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCD 177
+ L +VR P++P F ++L+ + R+I + + + K SM L+ +
Sbjct: 198 EPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSMPPLIQE 257
Query: 178 MYKN 181
M +N
Sbjct: 258 MLEN 261
>1osh_A BIle acid receptor; nuclear receptor, ligand binding domain,
transcription; HET: FEX; 1.80A {Homo sapiens} SCOP:
a.123.1.1 PDB: 3l1b_A* 3bej_A* 3fli_A* 3hc5_A* 3rvf_A*
3dct_A* 3dcu_A* 3ruu_A* 3rut_A* 3olf_A* 3okh_A* 3fxv_A*
3oki_A* 3omk_A* 3omm_A* 3oof_A* 3ook_A* 3hc6_A* 3p89_A*
3p88_A* ...
Length = 232
Score = 142 bits (361), Expect = 3e-43
Identities = 39/179 (21%), Positives = 71/179 (39%), Gaps = 6/179 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
+ V++ K LP F L DQ+ LL+ S E L + + L S E +
Sbjct: 57 VLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLPSGHSDLLEERIRNSG 116
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+ + + + + E+A L A+V+ + + +KD VE LQ+
Sbjct: 117 IS-----DEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDREAVEKLQEPL 171
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
+L + + H P P F LL ++ R + + + V + LLC+++
Sbjct: 172 LDVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEMLMSWR-VNDHKFTPLLCEIW 229
>1sqn_A PR, progesterone receptor; nuclear receptor, steroid receptor,
norethindrone, birth control, hormone/growth factor
receptior complex; HET: NDR; 1.45A {Homo sapiens} SCOP:
a.123.1.1 PDB: 3g8o_A* 3g8n_A* 3d90_A* 1e3k_A* 1sr7_A*
1zuc_B* 3zr7_A* 2w8y_A* 3zra_A* 3zrb_A* 4a2j_A* 4apu_A*
1a28_A* 2ovh_A* 2ovm_A* 3hq5_A* 3kba_A*
Length = 261
Score = 143 bits (362), Expect = 4e-43
Identities = 35/185 (18%), Positives = 69/185 (37%), Gaps = 7/185 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
VKW+K+LP F L DQ+ L++ SW L + S + L+ A + +
Sbjct: 56 SVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLILNEQ 115
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKS-ETRGLKDSLQVENLQDQ 119
K S + + + Q F + V EF C+K ++L + GL+ Q E ++
Sbjct: 116 RMKESSFYSLCLTMWQIPQEFVKLQVSQEEFLCMKVLLLLNTIPLEGLRSQTQFEEMRSS 175
Query: 120 AQVMLAQHVRTHHPA---QPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANT---SMEK 173
L + + RF +L + ++ + + +
Sbjct: 176 YIRELIKAIGLRQKGVVSSSQRFYQLTKLLDNLHDLVKQLHLYCLNTFIQSRALSVEFPE 235
Query: 174 LLCDM 178
++ ++
Sbjct: 236 MMSEV 240
>1xdk_B RAR-beta, retinoic acid receptor, beta; nuclear receptor,
coactivator, ligand, hormone/growth factor receptor
complex; HET: REA; 2.90A {Mus musculus} SCOP: a.123.1.1
Length = 303
Score = 143 bits (363), Expect = 9e-43
Identities = 39/182 (21%), Positives = 79/182 (43%), Gaps = 8/182 (4%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V++AK LP F L DQ+ LL+ + ++ +L P + + F+ +
Sbjct: 88 VEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPE-QDTMTFSDGLTLNRTQ-- 144
Query: 63 KASQTAADVRVLNGVLQ---RFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
A + + V + + +D E L A+ L + + L++ +V+ LQ+
Sbjct: 145 --MHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEP 202
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
L ++R P++P F ++L+ + R+I + + + K SM L+ +M
Sbjct: 203 LLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEML 262
Query: 180 KN 181
+N
Sbjct: 263 EN 264
>3vhu_A Mineralocorticoid receptor; nuclear receptor, transcription factor,
activating mutation, hypertension, antagonist,
spironolactone; HET: SNL; 2.11A {Homo sapiens}
Length = 294
Score = 143 bits (361), Expect = 1e-42
Identities = 38/185 (20%), Positives = 71/185 (38%), Gaps = 7/185 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
VKWAK LP F LP DQ+ L++ SW L S S L+ A + V
Sbjct: 89 QVVKWAKVLPGFKNLPLEDQITLIQYSWMSLLSFALSWRSYKHTNSQFLYFAPDLVFNEE 148
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETR-GLKDSLQVENLQDQ 119
S + ++ + +F + + E+ +K ++L + + GLK E ++
Sbjct: 149 KMHQSAMYELCQGMHQISLQFVRLQLTFEEYTIMKVLLLLSTIPKDGLKSQAAFEEMRTN 208
Query: 120 AQVMLAQHVRTHH---PAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANT---SMEK 173
L + V RF +L + ++ S ++ F+ ++
Sbjct: 209 YIKELRKMVTKCPNNSGQSWQRFYQLTKLLDSMHDLVSDLLEFCFYTFRESHALKVEFPA 268
Query: 174 LLCDM 178
+L ++
Sbjct: 269 MLVEI 273
>3vhv_A Mineralocorticoid receptor; nuclear receptor, transcription factor,
activating mutation, hypertension, non-steroidal
antagonist; HET: LD1 LD2; 1.35A {Homo sapiens} PDB:
2aax_A* 2aa6_A* 2ab2_A* 2aa2_A* 2aa5_A* 2aa7_A* 2a3i_A*
1y9r_A* 1ya3_A* 2oax_A* 2abi_A* 2q1h_A* 2q1v_A* 2q3y_A*
3ry9_A*
Length = 260
Score = 140 bits (355), Expect = 4e-42
Identities = 38/185 (20%), Positives = 71/185 (38%), Gaps = 7/185 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
VKWAK LP F LP DQ+ L++ SW L S S L+ A + V
Sbjct: 55 QVVKWAKVLPGFKNLPLEDQITLIQYSWMSLLSFALSWRSYKHTNSQFLYFAPDLVFNEE 114
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETR-GLKDSLQVENLQDQ 119
S + ++ + +F + + E+ +K ++L + + GLK E ++
Sbjct: 115 KMHQSAMYELCQGMHQISLQFVRLQLTFEEYTIMKVLLLLSTIPKDGLKSQAAFEEMRTN 174
Query: 120 AQVMLAQHVRTHH---PAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANT---SMEK 173
L + V RF +L + ++ S ++ F+ ++
Sbjct: 175 YIKELRKMVTKCPNNSGQSWQRFYQLTKLLDSMHDLVSDLLEFCFYTFRESHALKVEFPA 234
Query: 174 LLCDM 178
+L ++
Sbjct: 235 MLVEI 239
>3n00_A REV-ERBA-alpha; reverba ncorid1, anti-parallel B-sheet,
transcription regula; 2.60A {Homo sapiens}
Length = 245
Score = 138 bits (350), Expect = 2e-41
Identities = 35/164 (21%), Positives = 69/164 (42%), Gaps = 2/164 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
V++AK++P F L DQV LL+ E+ ++ + + +F S ++
Sbjct: 80 EVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVK-DQTVMF-LSRTTYSLQ 137
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
A + + ++ + + E AVVL ++ G+++S VE LQ+
Sbjct: 138 ELGAMGMGDLLSAMFDFSEKLNSLALTEEELGLFTAVVLVSADRSGMENSASVEQLQETL 197
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAK 164
L V + P + +RF +LLL R + + + + +
Sbjct: 198 LRALRALVLKNRPLETSRFTKLLLKLPDLRTLNNMHSEKLLSFR 241
>3ilz_A Thyroid hormone receptor, alpha isoform 1 variant; nuclear
receptor, signaling protein; HET: B72; 1.85A {Homo
sapiens} PDB: 3jzb_A* 3hzf_A* 2h79_A* 2h77_A* 1nav_A*
3uvv_A* 1xzx_X* 1y0x_X* 1nq1_A* 3jzc_A* 1nuo_A* 3imy_A*
1nq0_A* 1bsx_A* 1r6g_A* 1nq2_A* 3gws_X* 1n46_A* 2h6w_X*
2j4a_A* ...
Length = 267
Score = 132 bits (334), Expect = 8e-39
Identities = 38/182 (20%), Positives = 68/182 (37%), Gaps = 3/182 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
V +AK LP F+ LP DQ+ILL+ E+ L A P + + V
Sbjct: 85 RVVDFAKKLPMFSELPXEDQIILLKGCCMEIMSLRAAVRYDPE-SDTLTLSGEMAVK-RE 142
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
K + + + +D E A L+AV+L ++ GL ++E Q+
Sbjct: 143 QLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLXVDKIEKSQEAY 202
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAK-TVANTSMEKLLCDMY 179
+ +V P + +LL+ + R I + K L +++
Sbjct: 203 LLAFEHYVNHRKHNIPHFWPKLLMKVTDLRMIGAXHASRFLHMKVEXPTELFPPLFLEVF 262
Query: 180 KN 181
++
Sbjct: 263 ED 264
>3cqv_A Nuclear receptor subfamily 1 group D member 2; reverb beta, heme,
NR1D2, DNA-binding, metal-binding, nucleus, repressor,
transcription; HET: HEM; 1.90A {Homo sapiens} PDB:
2v7c_A 2v0v_A
Length = 199
Score = 129 bits (325), Expect = 3e-38
Identities = 35/166 (21%), Positives = 66/166 (39%), Gaps = 10/166 (6%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V++AK +P F L DQV LL+ E+ ++ E + F + +
Sbjct: 37 VEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAK-ERTVTFLSGKKY-----S 90
Query: 63 KASQTAADVRVLNGVLQRF----RLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQD 118
+ L + F + + E + AVVL ++ G+++ VE LQ+
Sbjct: 91 VDDLHSMGAGDLLNSMFEFSEKLNALQLSDEEMSLFTAVVLVSADRSGIENVNSVEALQE 150
Query: 119 QAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAK 164
L + +HP + + F +LLL R++ + + + K
Sbjct: 151 TLIRALRTLIMKNHPNEASIFTKLLLKLPDLRSLNNMHSEELLAFK 196
>2o4j_A Vitamin D3 receptor; nuclear receptor-ligand complex,
hormone/growth factor receptor complex; HET: VD4; 1.74A
{Rattus norvegicus} SCOP: a.123.1.1 PDB: 1rk3_A* 1rjk_A*
1rkh_A* 1rkg_A* 2o4r_A*
Length = 292
Score = 129 bits (325), Expect = 3e-37
Identities = 34/185 (18%), Positives = 72/185 (38%), Gaps = 4/185 (2%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
+ +AK +P F L DQ++LL+ S E+ +L + Q S +
Sbjct: 74 KVIGFAKMIPGFRDLTSDDQIVLLKSSAIEVIMLRSNQSFTMDDMSWDCGSQDYKYDVTD 133
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
KA T + L + + + E L A+ + + G++D+ VE +QD+
Sbjct: 134 VSKAGHTLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAKLVEAIQDRL 193
Query: 121 QVMLAQHVRTHH--PAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVA--NTSMEKLLC 176
L ++R H P + +++ + R++ + + + L+
Sbjct: 194 SNTLQTYIRCRHPPPGSHQLYAKMIQKLADLRSLNEEHSKQYRSLSFQPENSMKLTPLVL 253
Query: 177 DMYKN 181
+++ N
Sbjct: 254 EVFGN 258
>2p54_A PPAR-alpha, peroxisome proliferator-activated receptor alpha; PPAR
alpha GW735 SRC1 agonist HDLC, transcription; HET: 735;
1.79A {Homo sapiens} SCOP: a.123.1.1 PDB: 3fei_A*
1i7g_A* 3kdu_A* 3kdt_A* 2rew_A* 1kkq_A* 3g8i_A* 3et1_A*
2znn_A* 3sp6_A* 1k7l_A* 2npa_A* 2xyj_A* 2xyw_A* 2xyx_A*
2q5g_A* 3gwx_A* 3dy6_A* 1gwx_A* 3peq_A* ...
Length = 267
Score = 125 bits (315), Expect = 5e-36
Identities = 35/182 (19%), Positives = 73/182 (40%), Gaps = 6/182 (3%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
++AK +P FA L DQV LL+ E L
Sbjct: 87 TEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNK---DGMLVAYGNGFITREFL 143
Query: 63 KASQTAAD--VRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
K+ + + +F + +D ++ + A ++ + GL + +E +Q+
Sbjct: 144 KSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGHIEKMQEGI 203
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIF-FAKTVANTSMEKLLCDMY 179
+L H++++HP F +LL + R + + Q + KT ++ ++ LL ++Y
Sbjct: 204 VHVLRLHLQSNHPDDIFLFPKLLQKMADLRQLVTEHAQLVQIIKKTESDAALHPLLQEIY 263
Query: 180 KN 181
++
Sbjct: 264 RD 265
>1nrl_A Orphan nuclear receptor PXR; PXR, xenobiotic, SRC-1, ligand binding
domain, transcription; HET: SRL; 2.00A {Homo sapiens}
SCOP: a.123.1.1 PDB: 1ilh_A* 1ilg_A* 1m13_A* 2qnv_A*
3r8d_A* 3ctb_A 3ctc_A 3hvl_A* 1skx_A* 2o9i_A*
Length = 316
Score = 125 bits (315), Expect = 1e-35
Identities = 32/179 (17%), Positives = 71/179 (39%), Gaps = 6/179 (3%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
+ +AK + F LP DQ+ LL+ + EL L + S + G
Sbjct: 137 ISFAKVISYFRDLPIEDQISLLKGAAFELCQLRFNTVFNAETGTWECGRLSYCLEDTAGG 196
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + + + E+ ++A+ LF + G+ V+ LQ+Q +
Sbjct: 197 FQQLLLEPMLKF---HYMLKKLQLHEEEYVLMQAISLFSPDRPGVLQHRVVDQLQEQFAI 253
Query: 123 MLAQHVRTHHPAQPAR--FGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
L ++ + P R F +++ M ++ R+I + Q + + + + L+ +++
Sbjct: 254 TLKSYIECNRPQPAHRFLFLKIMAMLTELRSINAQHTQRLLRIQDI-HPFATPLMQELF 311
>3b0t_A Vitamin D3 receptor; nuclear receptor, transcription, gene
regulation; HET: MCZ; 1.30A {Homo sapiens} PDB: 3a40_X*
1s0z_A* 1s19_A* 2ham_A* 2har_A* 2has_A* 1txi_A* 2hb8_A*
2hb7_A* 3a3z_X* 3a78_A* 3auq_A* 3aur_A* 3ax8_A* 3cs4_A*
3cs6_A* 1ie9_A* 1db1_A* 1ie8_A* 3kpz_A* ...
Length = 254
Score = 121 bits (306), Expect = 9e-35
Identities = 31/181 (17%), Positives = 73/181 (40%), Gaps = 4/181 (2%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
+ +AK +P F L DQ++LL+ S E+ +L + + S N
Sbjct: 73 IGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSNESFTMDDMSWTCGNQDYKYRVSDVT 132
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
KA + + L + + + E L A+ + + G++D+ +E +QD+
Sbjct: 133 KAGHSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAALIEAIQDRLSN 192
Query: 123 MLAQHVRTHHPAQPAR--FGRLLLMTSQCRNIPSARVQHIFF--AKTVANTSMEKLLCDM 178
L ++R HP + + +++ + R++ + + + + L+ ++
Sbjct: 193 TLQTYIRCRHPPPGSHLLYAKMIQKLADLRSLNEEHSKQYRCLSFQPECSMKLTPLVLEV 252
Query: 179 Y 179
+
Sbjct: 253 F 253
>2r40_D Ecdysone receptor, 20-hydroxy-ecdysone receptor; nuclear receptor
ligand-binding domain, anti-parallel alpha- sandwich,
ecdysone receptor, ECR, gene regulation; HET: FLC 20E
EPH; 2.40A {Heliothis virescens} SCOP: a.123.1.1 PDB:
1r1k_D* 3ixp_D* 1r20_D*
Length = 266
Score = 118 bits (298), Expect = 2e-33
Identities = 44/180 (24%), Positives = 79/180 (43%), Gaps = 7/180 (3%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V++AK LP FA + DQ+ LL+ SE+ +L + S LF A+ N
Sbjct: 85 VEFAKGLPGFAKISQSDQITLLKACSSEVMMLRVARRYDA-ATDSVLF-ANNQAYTRDNY 142
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + A + L + + +D +A L A+V+F S+ GL+ L VE +Q
Sbjct: 143 RKAGMAYVIEDLLHFCRCMYSMMMDNVHYALLTAIVIF-SDRPGLEQPLLVEEIQRYYLN 201
Query: 123 MLAQHVRTHHPAQP---ARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
L ++ + A P FG++L + ++ R + K + N + L +++
Sbjct: 202 TLRVYILNQNSASPRCAVIFGKILGILTEIRTLGMQNSNMCISLK-LKNRKLPPFLEEIW 260
>3up3_A Acedaf-12; ligand binding domain, nematode, steroid binding
protein- transcription complex; HET: XCA; 1.25A
{Ancylostoma ceylanicum} PDB: 3up0_A*
Length = 243
Score = 118 bits (296), Expect = 2e-33
Identities = 31/186 (16%), Positives = 62/186 (33%), Gaps = 10/186 (5%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHV-AAVPN 61
VK AK LP+F L + LL+ E+ + ++ S E ++
Sbjct: 58 VKMAKRLPAFNDLSQDGKFALLKGGMIEMLTVRGVRRFDSSSGSWTTPTLGESSEVSINM 117
Query: 62 GKASQTAADVRVLNGVLQRFR----LVGVDPAEFACLKAVVLFKSETRG--LKDSLQVEN 115
LQ F+ + + + + +VLF +D +
Sbjct: 118 FDQLNADVRSEQKMRFLQFFKIFHEDIRSNDLVISMIMLIVLFSPRDSITDPEDRRIIAR 177
Query: 116 LQDQAQVMLAQHVRTHHPAQPAR-FGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKL 174
+Q +L +++ + + + +L R I ++ F TV + E L
Sbjct: 178 HHEQFSALLNRYLESLYGDDAHQLNEQLPTALRMLREISASSGML--FLGTVNTSEAEPL 235
Query: 175 LCDMYK 180
+ +K
Sbjct: 236 PREFFK 241
>1nq7_A Nuclear receptor ROR-beta; ligand-binding domain, retinoids,
retinoic acid, synthetic ligand, antagonist,
transcription; HET: ARL; 1.50A {Rattus norvegicus} SCOP:
a.123.1.1 PDB: 1k4w_A* 1n4h_A*
Length = 244
Score = 116 bits (293), Expect = 5e-33
Identities = 31/181 (17%), Positives = 66/181 (36%), Gaps = 10/181 (5%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V++AK + F L DQ++LL+ E+ L+ + PL ++ LF
Sbjct: 67 VEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPL-NNTVLFEGK-----YGGM 120
Query: 63 KASQTAADVRVLNGVLQ---RFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
+ + ++N + + E A + VL + L + +V+ LQ++
Sbjct: 121 QMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLLEPRKVQKLQEK 180
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
L ++ +H +L+ + + + + K + L +Y
Sbjct: 181 IYFALQHVIQKNHL-DDETLAKLIAKIPTITAVCNLHGEKLQVFKQSHPDIVNTLFPPLY 239
Query: 180 K 180
K
Sbjct: 240 K 240
>1z5x_E Ecdysone receptor ligand binding domain; ponasterone A, nuclear
receptor, ECR, USP, hormone/growth factor receptor
complex; HET: P1A; 3.07A {Bemisia tabaci}
Length = 310
Score = 116 bits (291), Expect = 5e-32
Identities = 47/182 (25%), Positives = 80/182 (43%), Gaps = 13/182 (7%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V+++K LP F L DQ+ LL+ SE+ + + S LF ++
Sbjct: 133 VEFSKRLPGFDKLIREDQIALLKACSSEVMMFRMARRYDA-ETDSILFATNQPY-----T 186
Query: 63 KASQTAADVRVLNGVLQRF----RLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQD 118
+ S T A + L RF + VD AE+A L A+V+F SE L + +VE +Q+
Sbjct: 187 RESYTVAGMGDTVEDLLRFCRHMCAMKVDNAEYALLTAIVIF-SERPSLSEGWKVEKIQE 245
Query: 119 QAQVMLAQHVRT-HHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCD 177
L +V P F +LL + ++ R + + + F K + N + L +
Sbjct: 246 IYIEALKAYVENRRKPYATTIFAKLLSVLTELRTLGNMNSETCFSLK-LKNRKVPSFLEE 304
Query: 178 MY 179
++
Sbjct: 305 IW 306
>3gyt_A Nuclear hormone receptor of the steroid/thyroid hormone receptors
superfamily; nuclear receptor, ligand binding domain,
dafachronic acid, nematode, DNA-binding, metal-binding,
nucleus, receptor; HET: DL4; 2.40A {Strongyloides
stercoralis} PDB: 3gyu_A*
Length = 244
Score = 112 bits (282), Expect = 2e-31
Identities = 36/191 (18%), Positives = 66/191 (34%), Gaps = 18/191 (9%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQ--------WSLPLLESSPLFNASE 54
VK AK L +F + + LL+ E+ + + W P+ S + +
Sbjct: 58 VKMAKRLGAFNEISEAGKFSLLKGGMIEMLTIRGVTVFNADKGVWQTPVDGHSQ-ISFNM 116
Query: 55 HVAAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGL---KDSL 111
P+ K +Q + N + R + + +VLF S+ GL +D
Sbjct: 117 FDKLRPDIKDTQKKGFLHFFNLLHSDVRK---NDLAIDIIVLMVLFDSKREGLVSQQDKE 173
Query: 112 QVENLQDQAQVMLAQHVRTHHPAQ-PARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTS 170
VE L + +L +++ + H + RF + R + V F T
Sbjct: 174 TVEKLHRNYESLLHRYLYSIHKEEAEQRFASIPKALVALRKVAENAVTL--FLGAGNTTE 231
Query: 171 MEKLLCDMYKN 181
L + +
Sbjct: 232 AASLPKEFFAT 242
>1n83_A Nuclear receptor ROR-alpha; three-layered alpha helical sandwich,
transcription regulation, nuclear protein, DNA binding,
lipid binding protein; HET: CLR; 1.63A {Homo sapiens}
SCOP: a.123.1.1 PDB: 1s0x_A*
Length = 270
Score = 112 bits (282), Expect = 5e-31
Identities = 29/186 (15%), Positives = 73/186 (39%), Gaps = 14/186 (7%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V++AK + F L DQ++LL+ E+ + + + ++ F+ +
Sbjct: 82 VEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCR-AFDSQNNTVYFDGK-----YASP 135
Query: 63 KASQTAADVRVLNGVLQ---RFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQ 119
++ ++ V + + + E A A VL ++ L++ +++E LQ +
Sbjct: 136 DVFKSLGCEDFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQK 195
Query: 120 AQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKT----VANTSMEKLL 175
Q+ L ++ +H + +L+ S R + + + K + L
Sbjct: 196 IQLALQHVLQKNHR-EDGILTKLICKVSTLRALCGRHTEKLMAFKAIYPDIVRLHFPPLY 254
Query: 176 CDMYKN 181
+++ +
Sbjct: 255 KELFTS 260
>2nxx_E Ecdysone receptor (ECR, NRH1); hormone receptor, APO and holo
ligand binding pocket, hormone/growth factor complex;
HET: P1A; 2.75A {Tribolium castaneum}
Length = 248
Score = 110 bits (277), Expect = 2e-30
Identities = 42/186 (22%), Positives = 75/186 (40%), Gaps = 21/186 (11%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V++AK LP F L DQ+ LL+ SE+ + + ++ N
Sbjct: 69 VEFAKRLPGFDKLLREDQIALLKACSSEVMMFRMAR----------RYDVQTDSILFVNN 118
Query: 63 KA-----SQTAADVRVLNGVLQ---RFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVE 114
+ A + +L + VD AE+A L A+V+F SE L + +VE
Sbjct: 119 QPYSRDSYNLAGMGETIEDLLHFCRTMYSMRVDNAEYALLTAIVIF-SERPALIEGWKVE 177
Query: 115 NLQDQAQVMLAQHVRTHHPAQPAR-FGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEK 173
+Q+ L +V +P F +LL + ++ R + + + F K N +
Sbjct: 178 KIQEIYLEALRAYVDNRRKPKPGTIFAKLLSVLTELRTLGNQNSEMCFSLKLK-NKKLPP 236
Query: 174 LLCDMY 179
L +++
Sbjct: 237 FLAEIW 242
>3l0l_A Nuclear receptor ROR-gamma; nuclear receptor, rorgamma, alternative
splicing, DNA-bindin binding, nucleus, receptor,
zinc-finger, acetylation, activator; HET: HC3; 1.74A
{Homo sapiens} PDB: 3b0w_A* 3kyt_A* 3l0j_A*
Length = 248
Score = 105 bits (263), Expect = 2e-28
Identities = 33/181 (18%), Positives = 67/181 (37%), Gaps = 10/181 (5%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V++AK L F L DQ++LL+ E+ L+ + + + F +
Sbjct: 73 VEFAKRLSGFMELCQNDQIVLLKAGAMEVVLVRMCR-AYNADNRTVFFEG--KYGGMELF 129
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A + + + + E A A+VL + GL++ +VE LQ ++
Sbjct: 130 RALGCSELISSIFDFSHSLSALHFSEDEIALYTALVLINAHRPGLQEKRKVEQLQYNLEL 189
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAK----TVANTSMEKLLCDM 178
H+ H L + R++ S V+ + + V + L ++
Sbjct: 190 AFHHHLCKTHRQSIL---AKLPPKGKLRSLCSQHVERLQIFQHLHPIVVQAAFPPLYKEL 246
Query: 179 Y 179
+
Sbjct: 247 F 247
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.12
Identities = 31/190 (16%), Positives = 64/190 (33%), Gaps = 63/190 (33%)
Query: 16 PFRDQVI-----LLEE------SWSELFL--LNAIQWSLPLLESSPLFNASEHVAAVPNG 62
+I L E ++F LN ++W L ++P +++ ++P
Sbjct: 182 VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW-LENPSNTP---DKDYLLSIP-- 235
Query: 63 KASQTAADVRVLNGVLQ--RF----RLVGVDPAEFA--------CLK----AVVLFKSET 104
S L GV+Q + +L+G P E + AV + ++++
Sbjct: 236 -ISC------PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS 288
Query: 105 RGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLL-------------MTSQCRN 151
+S +++ V+ VR + +L M S N
Sbjct: 289 W---ESF-FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS-ISN 343
Query: 152 IPSARVQ-HI 160
+ +VQ ++
Sbjct: 344 LTQEQVQDYV 353
>3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate
binding domain, structural G consortium, SGC,
chaperone; 2.80A {Homo sapiens}
Length = 182
Score = 27.6 bits (62), Expect = 1.6
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 9/33 (27%)
Query: 66 QTAADVRVL---------NGVLQRFRLVGVDPA 89
QT +++V N +L +F L+G+ PA
Sbjct: 64 QTQVEIKVCQGEREMAGDNKLLGQFTLIGIPPA 96
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 28.0 bits (63), Expect = 1.7
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 9/33 (27%)
Query: 66 QTAADVRVL---------NGVLQRFRLVGVDPA 89
Q+A + VL N L +F L G++PA
Sbjct: 433 QSAVTIHVLQGERKRAADNKSLGQFNLDGINPA 465
>3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12,
HSP70 protein, peptide-BIN domain, PSI-2, protein
structure initiative; 1.72A {Caenorhabditis elegans}
Length = 151
Score = 27.3 bits (61), Expect = 1.9
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 9/33 (27%)
Query: 66 QTAADVRVLNG---------VLQRFRLVGVDPA 89
QT ++V G +L +F LVG+ PA
Sbjct: 44 QTQVQIKVFQGEREMATSNKLLGQFSLVGIPPA 76
>1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR
{Escherichia coli} SCOP: b.130.1.1
Length = 135
Score = 26.9 bits (60), Expect = 2.2
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 9/34 (26%)
Query: 65 SQTAADVRVLNG---------VLQRFRLVGVDPA 89
+Q+A + VL G L +F L G++PA
Sbjct: 60 NQSAVTIHVLQGERKRAADNKSLGQFNLDGINPA 93
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain
rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus
HTA426}
Length = 509
Score = 27.6 bits (62), Expect = 2.9
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 9/33 (27%)
Query: 66 QTAADVRVL---------NGVLQRFRLVGVDPA 89
QT D+ VL N L RF+L G+ PA
Sbjct: 402 QTTVDIHVLQGERPMAADNKSLGRFQLTGIPPA 434
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 25.4 bits (56), Expect = 3.9
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 124 LAQHVRTHHPAQP 136
+A H HPA
Sbjct: 54 VAAHRSKSHPALL 66
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB:
3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A
1bpr_A 2bpr_A 1dg4_A
Length = 219
Score = 26.8 bits (60), Expect = 4.1
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 9/33 (27%)
Query: 66 QTAADVRVL---------NGVLQRFRLVGVDPA 89
Q+A + VL N L +F L G++PA
Sbjct: 45 QSAVTIHVLQGERKRAADNKSLGQFNLDGINPA 77
>3r87_A Putative uncharacterized protein; unknown function; 1.05A
{Photobacterium profundum}
Length = 135
Score = 26.1 bits (58), Expect = 4.4
Identities = 2/43 (4%), Positives = 9/43 (20%), Gaps = 3/43 (6%)
Query: 135 QPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCD 177
F + + + + + + V +
Sbjct: 68 DGVEFAEICDIRTSFTLDGKYK---TLWRQEVWRPGASRAAVI 107
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 24.8 bits (55), Expect = 5.8
Identities = 3/10 (30%), Positives = 5/10 (50%)
Query: 124 LAQHVRTHHP 133
+ HV+ H
Sbjct: 56 MTAHVKIIHK 65
>3c17_A L-asparaginase precursor; isoaspartyl peptidase, NTN-hydrolase,
autoprot precursor, hydrolase; 1.95A {Escherichia coli}
PDB: 2zak_A
Length = 320
Score = 26.6 bits (59), Expect = 5.8
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 34 LNAIQWSLPLLESSPLFNA 52
L+ + ++ LLE PLFNA
Sbjct: 49 LDVVTEAVRLLEECPLFNA 67
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 25.8 bits (56), Expect = 8.0
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 93 CLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHP 133
C V F + G + QVE L + ++ +H H+
Sbjct: 175 CGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEHKGAHYS 215
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.132 0.390
Gapped
Lambda K H
0.267 0.0754 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,625,935
Number of extensions: 139426
Number of successful extensions: 448
Number of sequences better than 10.0: 1
Number of HSP's gapped: 350
Number of HSP's successfully gapped: 72
Length of query: 181
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 93
Effective length of database: 4,244,745
Effective search space: 394761285
Effective search space used: 394761285
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.5 bits)