RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17882
(181 letters)
>d1pk5a_ a.123.1.1 (A:) Orphan nuclear receptor NR5a2 (LRH-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 242
Score = 144 bits (363), Expect = 6e-44
Identities = 46/181 (25%), Positives = 84/181 (46%), Gaps = 3/181 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHV---A 57
V+WA++ F L DQ+ LL+ WSEL +L+ I + + +F + +
Sbjct: 57 SIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVAHGKEGTIFLVTGEHVDYS 116
Query: 58 AVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQ 117
+ + + + ++ R R + D EF CLK +VLF S+ + L++ VE +Q
Sbjct: 117 TIISHTEVAFNNLLSLAQELVVRLRSLQFDQREFVCLKFLVLFSSDVKNLENLQLVEGVQ 176
Query: 118 DQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCD 177
+Q L + ++P Q +FG+LLL + R I ++++ + LL +
Sbjct: 177 EQVNAALLDYTVCNYPQQTEKFGQLLLRLPELRAISKQAEDYLYYKHVNGDVPYNNLLIE 236
Query: 178 M 178
M
Sbjct: 237 M 237
>d1g2na_ a.123.1.1 (A:) Ultraspiracle protein, usp {Heliothis
virescens [TaxId: 7102]}
Length = 256
Score = 142 bits (360), Expect = 2e-43
Identities = 52/198 (26%), Positives = 89/198 (44%), Gaps = 17/198 (8%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
V WA+++P F+ L DQ++L++ SW+EL L S+ L
Sbjct: 57 ALVVWARDIPHFSQLEMEDQILLIKGSWNELLLFAIAWRSMEFLTEERDGVDGTGNRTTS 116
Query: 61 NGKASQTAAD-----------------VRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSE 103
+ RVL+ + + R + VD AE+ LKA++L +
Sbjct: 117 PPQLMCLMPGMTLHRNSALQAGVGQIFDRVLSELSLKMRTLRVDQAEYVALKAIILLNPD 176
Query: 104 TRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFA 163
+GLK+ +VE L+++ + L ++ R ++ RF LLL R+I +H+FF
Sbjct: 177 VKGLKNRQEVEVLREKMFLCLDEYCRRSRSSEEGRFAALLLRLPALRSISLKSFEHLFFF 236
Query: 164 KTVANTSMEKLLCDMYKN 181
VA+TS+ + D +N
Sbjct: 237 HLVADTSIAGYIRDALRN 254
>d1pzla_ a.123.1.1 (A:) Hepatocyte nuclear factor 4-alpha {Human
(Homo sapiens) [TaxId: 9606]}
Length = 233
Score = 142 bits (358), Expect = 3e-43
Identities = 52/178 (29%), Positives = 87/178 (48%), Gaps = 1/178 (0%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
+ V+WAK +P+F LP DQV LL E LL A + S+ + L V
Sbjct: 52 VLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVF-KDVLLLGNDYIVPRHC 110
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
A + +R+L+ ++ F+ + +D E+A LKA++ F + +GL D +++ L+ Q
Sbjct: 111 PELAEMSRVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAKGLSDPGKIKRLRSQV 170
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
QV L ++ RFG LLL+ ++I ++ I F K ++ LL +M
Sbjct: 171 QVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFGMAKIDNLLQEM 228
>d1hg4a_ a.123.1.1 (A:) Ultraspiracle protein, usp {Drosophila
melanogaster [TaxId: 7227]}
Length = 265
Score = 138 bits (348), Expect = 1e-41
Identities = 52/206 (25%), Positives = 92/206 (44%), Gaps = 26/206 (12%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSP------------ 48
V++A+ +P FA +P DQVILL+ +W EL + N S+ L+
Sbjct: 54 QMVEYARMMPHFAQVPLDDQVILLKAAWIELLIANVAWCSIVSLDDGGAGGGGGGLGHDG 113
Query: 49 --------------LFNASEHVAAVPNGKASQTAADVRVLNGVLQRFRLVGVDPAEFACL 94
N S KA +A R+L+ + + + + +D E +CL
Sbjct: 114 SFERRSPGLQPQQLFLNQSFSYHRNSAIKAGVSAIFDRILSELSVKMKRLNLDRRELSCL 173
Query: 95 KAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPS 154
KA++L+ + RG+K ++E +++ L +H R HP RF +LLL R+I
Sbjct: 174 KAIILYNPDIRGIKSRAEIEMCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSISL 233
Query: 155 ARVQHIFFAKTVANTSMEKLLCDMYK 180
H+F + ++ +E+L + +
Sbjct: 234 KCQDHLFLFRITSDRPLEELFLEQLE 259
>d1fcya_ a.123.1.1 (A:) Retinoic acid receptor gamma (RAR-gamma)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 134 bits (338), Expect = 3e-40
Identities = 36/178 (20%), Positives = 69/178 (38%), Gaps = 2/178 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
V++AK LP F L DQ+ LL+ + ++ +L P ++ +
Sbjct: 59 KIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTF--SDGLTLNRT 116
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+ ++ + + +D E L A+ L + L++ +V+ LQ+
Sbjct: 117 QMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPL 176
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L + R P+QP F R+L+ + R I + + K M L+ +M
Sbjct: 177 LEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPMPPLIREM 234
>d2p1ta1 a.123.1.1 (A:229-458) Retinoid-X receptor alpha (RXR-alpha)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 230
Score = 131 bits (330), Expect = 3e-39
Identities = 58/180 (32%), Positives = 96/180 (53%), Gaps = 1/180 (0%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
V+WAK +P F+ LP DQVILL W+EL + + S+ + + L HV
Sbjct: 50 TLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAV-KDGILLATGLHVHRNS 108
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
A A RVL ++ + R + +D E CL+A+VLF +++GL + +VE L+++
Sbjct: 109 AHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKV 168
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
L + + +P QP RF +LLL R+I ++H+FF K + +T ++ L +M +
Sbjct: 169 YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLE 228
>d2e2ra1 a.123.1.1 (A:234-456) Orphan nuclear receptor ERR3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 223
Score = 130 bits (328), Expect = 5e-39
Identities = 45/180 (25%), Positives = 84/180 (46%), Gaps = 2/180 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
+ + WAK++P F+ L DQ+ LL+ +W E+ +L + SL L A +++
Sbjct: 45 VIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSF--EDELVYADDYIMDED 102
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
K + + ++++++ + ++ EF LKA+ L S++ ++D V+ LQD
Sbjct: 103 QSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVL 162
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
L + H P R G++L+ R + VQH + K M KL +M +
Sbjct: 163 HEALQDYEAGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGKVPMHKLFLEMLE 222
>d2b50b1 a.123.1.1 (B:211-475) Peroxisome proliferator-activated
receptor delta, PPAR-DELTA {Human (Homo sapiens) [TaxId:
9606]}
Length = 265
Score = 131 bits (331), Expect = 7e-39
Identities = 39/182 (21%), Positives = 72/182 (39%), Gaps = 2/182 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
++AK++PSF++L DQV LL+ E +
Sbjct: 85 ELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASIVNKD-GLLVANGSGFVTREFL 143
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+ + +F + +D ++ A A ++ + GL + +VE +QD
Sbjct: 144 RSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGDRPGLMNVPRVEAIQDTI 203
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIF-FAKTVANTSMEKLLCDMY 179
L H++ +HP F +LL + R + + Q + KT TS+ LL ++Y
Sbjct: 204 LRALEFHLQANHPDAQQLFPKLLQKMADLRQLVTEHAQMMQRIKKTETETSLHPLLQEIY 263
Query: 180 KN 181
K+
Sbjct: 264 KD 265
>d2qw4a1 a.123.1.1 (A:32-264) Orphan nuclear receptor NR4A1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 233
Score = 129 bits (325), Expect = 2e-38
Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 6/183 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
+ KWA+ +P FA L DQ +LLE ++ ELF+L S P E +F + +
Sbjct: 54 VIRKWAEKIPGFAELSPADQDLLLESAFLELFILRLAYRSKP-GEGKLIFCSGLVLH--R 110
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
A + + + + VD FACL A+V ++ GL++ +VE LQ++
Sbjct: 111 LQCARGFGDWIDSILAFSRSLHSLLVDVPAFACLSALV-LITDRHGLQEPRRVEELQNRI 169
Query: 121 QVMLAQHVRT--HHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L +HV P + RLL + R + + +Q IF+ K ++ +
Sbjct: 170 ASCLKEHVAAVAGEPQPASCLSRLLGKLPELRTLCTQGLQRIFYLKLEDLVPPPPIIDKI 229
Query: 179 YKN 181
+ +
Sbjct: 230 FMD 232
>d2fvja1 a.123.1.1 (A:207-477) Peroxisome proliferator activated
receptor gamma, PPAR-gamma {Human (Homo sapiens) [TaxId:
9606]}
Length = 271
Score = 127 bits (321), Expect = 2e-37
Identities = 38/182 (20%), Positives = 69/182 (37%), Gaps = 2/182 (1%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
++AK++P F L DQV LL+ E+
Sbjct: 89 EITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKD-GVLISEGQGFMTREFL 147
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+ +F + +D ++ A AV++ + GL + +E++QD
Sbjct: 148 KSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDNL 207
Query: 121 QVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIF-FAKTVANTSMEKLLCDMY 179
L ++ +HP F +LL + R I + VQ + KT + S+ LL ++Y
Sbjct: 208 LQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPLLQEIY 267
Query: 180 KN 181
K+
Sbjct: 268 KD 269
>d2p54a1 a.123.1.1 (A:202-468) Peroxisome proliferator activated
receptor alpha, PPAR-alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 267
Score = 126 bits (317), Expect = 7e-37
Identities = 33/180 (18%), Positives = 70/180 (38%), Gaps = 2/180 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
++AK +P FA L DQV LL+ E +
Sbjct: 87 TEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKD-GMLVAYGNGFITREFLKS 145
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ +F + +D ++ + A ++ + GL + +E +Q+
Sbjct: 146 LRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGHIEKMQEGIVH 205
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIF-FAKTVANTSMEKLLCDMYKN 181
+L H++++HP F +LL + R + + Q + KT ++ ++ LL ++Y++
Sbjct: 206 VLRLHLQSNHPDDIFLFPKLLQKMADLRQLVTEHAQLVQIIKKTESDAALHPLLQEIYRD 265
>d3d24a1 a.123.1.1 (A:194-420) Steroid hormone receptor ERR1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 227
Score = 125 bits (314), Expect = 8e-37
Identities = 47/184 (25%), Positives = 85/184 (46%), Gaps = 6/184 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
+ + WAK++P F++L DQ+ +L+ W E+ +L Q SLPL + A + V
Sbjct: 45 VTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSLPLQDELAF--AEDLVLDEE 102
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+A+ L +++R + + ++ E+ LKA+ L S++ ++D+ VE L++
Sbjct: 103 GARAAGLGELGAALLQLVRRLQALRLEREEYVLLKALALANSDSVHIEDAEAVEQLREAL 162
Query: 121 QVMLAQHVRTHH----PAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLC 176
L ++ A+ R GRLLL R + H + K M KL
Sbjct: 163 HEALLEYEAGRAGPGGGAERRRAGRLLLTLPLLRQTAGKVLAHFYGVKLEGKVPMHKLFL 222
Query: 177 DMYK 180
+M +
Sbjct: 223 EMLE 226
>d1n46a_ a.123.1.1 (A:) Thyroid hormone receptor beta (TR-beta)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 125 bits (315), Expect = 1e-36
Identities = 41/180 (22%), Positives = 66/180 (36%), Gaps = 3/180 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V +AK LP F LP DQ+ILL+ E+ L A P ES L E
Sbjct: 74 VDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP--ESETLTLNGEMAVTRGQL 131
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
K + + +D E A L+AV+L S+ GL ++E QD +
Sbjct: 132 KNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLL 191
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAK-TVANTSMEKLLCDMYKN 181
++ + +LL+ + R I + K L +++++
Sbjct: 192 AFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 251
>d1osha_ a.123.1.1 (A:) Bile acid receptor FXR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 231
Score = 125 bits (314), Expect = 1e-36
Identities = 39/177 (22%), Positives = 72/177 (40%), Gaps = 6/177 (3%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V++ K LP F L DQ+ LL+ S E L + + L S E +
Sbjct: 59 VEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLPSGHSDLLEERIR----- 113
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + + + + + + E+A L A+V+ + + +KD VE LQ+
Sbjct: 114 NSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDREAVEKLQEPLLD 173
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
+L + + H P P F LL ++ R + + + V + LLC+++
Sbjct: 174 VLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEMLMSWR-VNDHKFTPLLCEIW 229
>d1xpca_ a.123.1.1 (A:) Estrogen receptor alpha {Human (Homo
sapiens) [TaxId: 9606]}
Length = 245
Score = 121 bits (304), Expect = 4e-35
Identities = 43/189 (22%), Positives = 77/189 (40%), Gaps = 12/189 (6%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
+ WAK +P F L DQV LLE +W E+ ++ + S+ LF + +
Sbjct: 50 HMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEH-PGKLLFAPNLLLDRNQ 108
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETR--------GLKDSLQ 112
+L RFR++ + EF CLK+++L S L++
Sbjct: 109 GKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEEKDH 168
Query: 113 VENLQDQAQVMLAQHVR---THHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANT 169
+ + D+ L + Q R +LLL+ S R++ + ++H++ K
Sbjct: 169 IHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCKNVV 228
Query: 170 SMEKLLCDM 178
+ LL +M
Sbjct: 229 PLYDLLLEM 237
>d1ovla_ a.123.1.1 (A:) Orphan nuclear receptor NURR1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 236
Score = 120 bits (303), Expect = 4e-35
Identities = 42/183 (22%), Positives = 80/183 (43%), Gaps = 6/183 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
+ WA+ +P FA LP DQ +L E ++ ELF+L S P +E +F +
Sbjct: 54 IIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNP-VEGKLIFCNGVVLH--R 110
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
+ + + + +D + F+C+ A+ + E GLK+ +VE LQ++
Sbjct: 111 LQCVRGFGEWIDSIVEFSSNLQNMNIDISAFSCIAALAMVT-ERHGLKEPKRVEELQNKI 169
Query: 121 QVMLAQHVRTHHPA--QPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDM 178
L HV ++ +P +LL + R + + +Q IF+ K ++ +
Sbjct: 170 VNCLKDHVTFNNGGLNRPNYLSKLLGKLPELRTLCTQGLQRIFYLKLEDLVPPPAIIDKL 229
Query: 179 YKN 181
+ +
Sbjct: 230 FLD 232
>d1pq9a_ a.123.1.1 (A:) Oxysterols receptor LXR-beta {Human (Homo
sapiens) [TaxId: 9606]}
Length = 239
Score = 120 bits (302), Expect = 7e-35
Identities = 41/177 (23%), Positives = 76/177 (42%), Gaps = 2/177 (1%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V +AK +P F L DQ+ LL+ S E+ LL + E + +
Sbjct: 64 VDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNHETECITFLKDFTYSKDDFH- 122
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+A + + + R +G+D AE+A L A+ +F ++ +++ +VE LQ
Sbjct: 123 RAGLQVEFINPIFEFSRAMRRLGLDDAEYALLIAINIFSADRPNVQEPGRVEALQQPYVE 182
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
L + R P RF R+L+ R + S + +F + + + LL +++
Sbjct: 183 ALLSYTRIKRPQDQLRFPRMLMKLVSLRTLSSVHSEQVFALRLQ-DKKLPPLLSEIW 238
>d1nrla_ a.123.1.1 (A:) Pregnane x receptor, PXR {Human (Homo
sapiens) [TaxId: 9606]}
Length = 292
Score = 120 bits (303), Expect = 2e-34
Identities = 30/179 (16%), Positives = 72/179 (40%), Gaps = 6/179 (3%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
+ +AK + F LP DQ+ LL+ + EL L + + + +
Sbjct: 114 ISFAKVISYFRDLPIEDQISLLKGAAFELCQLRFNTVFNA---ETGTWECGRLSYCLEDT 170
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + + + + E+ ++A+ LF + G+ V+ LQ+Q +
Sbjct: 171 AGGFQQLLLEPMLKFHYMLKKLQLHEEEYVLMQAISLFSPDRPGVLQHRVVDQLQEQFAI 230
Query: 123 MLAQHVRTHHPAQPAR--FGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
L ++ + P R F +++ M ++ R+I + Q + + + + L+ +++
Sbjct: 231 TLKSYIECNRPQPAHRFLFLKIMAMLTELRSINAQHTQRLLRIQDI-HPFATPLMQELF 288
>d1pdua_ a.123.1.1 (A:) Nuclear hormone receptor HR38 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 230
Score = 118 bits (298), Expect = 2e-34
Identities = 40/181 (22%), Positives = 70/181 (38%), Gaps = 6/181 (3%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
++A+ +P + L DQ +L + + ELF+L + N
Sbjct: 53 KQFAEKIPGYFDLLPEDQELLFQSASLELFVLRLAYRARIDDTKLIFCN---GTVLHRTQ 109
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + + + +D + FACL A+ L GL++ +VE LQ +
Sbjct: 110 CLRSFGEWLNDIMEFSRSLHNLEIDISAFACLCALTLITE-RHGLREPKKVEQLQMKIIG 168
Query: 123 MLAQHVRTHHPAQPA--RFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
L HV + AQ F RLL + R++ +Q IF+ K L+ +M+
Sbjct: 169 SLRDHVTYNAEAQKKQHYFSRLLGKLPELRSLSVQGLQRIFYLKLEDLVPAPALIENMFV 228
Query: 181 N 181
Sbjct: 229 T 229
>d2j7ya1 a.123.1.1 (A:217-452) Estrogen receptor beta {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 236
Score = 119 bits (298), Expect = 3e-34
Identities = 42/190 (22%), Positives = 69/190 (36%), Gaps = 11/190 (5%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
+ WAK +P F L DQV LLE W E+ ++ + S+ +F +
Sbjct: 47 HMIGWAKKIPGFVELSLLDQVRLLESCWMEVLMVGLMWRSIDH-PGKLIFAPDLVLDRDE 105
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQD-- 118
+L RFR + + E+ C+KA++L S L + Q
Sbjct: 106 GKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMYPLASANQEAESSRKL 165
Query: 119 --------QAQVMLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTS 170
A V + Q R LL++ S R+I + ++H+ K
Sbjct: 166 THLLNAVTDALVWVIAKSGISSQQQSVRLANLLMLLSHVRHISNKGMEHLLSMKCKNVVP 225
Query: 171 MEKLLCDMYK 180
+ LL +M
Sbjct: 226 VYDLLLEMLN 235
>d1nhza_ a.123.1.1 (A:) Glucocorticoid receptor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 247
Score = 115 bits (290), Expect = 4e-33
Identities = 37/187 (19%), Positives = 67/187 (35%), Gaps = 6/187 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
AVKWAK +P F L DQ+ LL+ SW L S ++ L A + +
Sbjct: 44 AAVKWAKAIPGFRNLHLDDQMTLLQYSWMSLMAFALGWRSYRQSSANLLCFAPDLIINEQ 103
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETR-GLKDSLQVENLQDQ 119
+ + V + V E+ C+K ++L S + GLK + ++
Sbjct: 104 RMTLPDMYDQCKHMLYVSSELHRLQVSYEEYLCMKTLLLLSSVPKDGLKSQELFDEIRMT 163
Query: 120 AQVMLAQHVRTHH---PAQPARFGRLLLMTSQCRNIPSARVQHIF--FAKTVANTSMEKL 174
L + + RF +L + + + + F F + ++
Sbjct: 164 YIKELGKAIVKREGNSSQNWQRFYQLTKLLDSMHEVVENLLNYCFQTFLDKTMSIEFPEM 223
Query: 175 LCDMYKN 181
L ++ N
Sbjct: 224 LAEIITN 230
>d2r40d1 a.123.1.1 (D:287-529) Ecdysone receptor {Noctuid moth
(Heliothis virescens) [TaxId: 7102]}
Length = 243
Score = 113 bits (283), Expect = 5e-32
Identities = 41/182 (22%), Positives = 79/182 (43%), Gaps = 7/182 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
+ V++AK LP FA + DQ+ LL+ SE+ +L + +S + A+
Sbjct: 63 LIVEFAKGLPGFAKISQSDQITLLKACSSEVMMLRVARRYDAATDS--VLFANNQAYTRD 120
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQA 120
N + + A + L + + +D +A L A+V+F + GL+ L VE +Q
Sbjct: 121 NYRKAGMAYVIEDLLHFCRCMYSMMMDNVHYALLTAIVIFS-DRPGLEQPLLVEEIQRYY 179
Query: 121 QVMLAQHVRTHHPAQP---ARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCD 177
L ++ + A P FG++L + ++ R + K + N + L +
Sbjct: 180 LNTLRVYILNQNSASPRCAVIFGKILGILTEIRTLGMQNSNMCISLK-LKNRKLPPFLEE 238
Query: 178 MY 179
++
Sbjct: 239 IW 240
>d1xvpb_ a.123.1.1 (B:) Orphan nuclear receptor NR1I3 (CAR) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 246
Score = 112 bits (282), Expect = 6e-32
Identities = 34/179 (18%), Positives = 75/179 (41%), Gaps = 6/179 (3%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
+K+ K+LP F +LP DQ+ LL+ + E+ + L++
Sbjct: 71 IKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFC--LQTQNFLCGPLRYTIEDGA 128
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
+ + +L R + + E+ L A+ LF + G+ +++ LQ++ +
Sbjct: 129 RVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPDRPGVTQRDEIDQLQEEMAL 188
Query: 123 MLAQHVRTHH--PAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMY 179
L +++ P + +LL + ++ R+I A I + ++ +M LL ++
Sbjct: 189 TLQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQGLS--AMMPLLQEIC 245
>d1t7ra_ a.123.1.1 (A:) Androgen receptor {Chimpanzee (Pan
troglodytes) [TaxId: 9598]}
Length = 250
Score = 112 bits (280), Expect = 2e-31
Identities = 40/188 (21%), Positives = 73/188 (38%), Gaps = 7/188 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
VKWAK LP F L DQ+ +++ SW L + S + S L+ A + V
Sbjct: 46 HVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEY 105
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETR-GLKDSLQVENLQDQ 119
S+ + + + Q F + + P EF C+KA++LF GLK+ + L+
Sbjct: 106 RMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKNQKFFDELRMN 165
Query: 120 AQVMLAQHVRTHHP---AQPARFGRLLLMTSQCRNIPSARVQHI---FFAKTVANTSMEK 173
L + + + RF +L + + I Q + + +
Sbjct: 166 YIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPIARELHQFTFDLLIKSHMVSVDFPE 225
Query: 174 LLCDMYKN 181
++ ++
Sbjct: 226 MMAEIISV 233
>d1nq7a_ a.123.1.1 (A:) Orphan nuclear receptor ROR-beta {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 244
Score = 111 bits (278), Expect = 3e-31
Identities = 33/178 (18%), Positives = 67/178 (37%), Gaps = 4/178 (2%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V++AK + F L DQ++LL+ E+ L+ + PL ++ LF +
Sbjct: 67 VEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPL-NNTVLFEGK--YGGMQMF 123
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
KA + V + + + E A + VL + L + +V+ LQ++
Sbjct: 124 KALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLLEPRKVQKLQEKIYF 183
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKTVANTSMEKLLCDMYK 180
L ++ +H +L+ + + + + K + L +YK
Sbjct: 184 ALQHVIQKNHL-DDETLAKLIAKIPTITAVCNLHGEKLQVFKQSHPDIVNTLFPPLYK 240
>d1sqna_ a.123.1.1 (A:) Progesterone receptor {Human (Homo sapiens)
[TaxId: 9606]}
Length = 251
Score = 110 bits (277), Expect = 5e-31
Identities = 36/188 (19%), Positives = 71/188 (37%), Gaps = 7/188 (3%)
Query: 1 MAVKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVP 60
VKW+K+LP F L DQ+ L++ SW L + S + L+ A + +
Sbjct: 47 SVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLILNEQ 106
Query: 61 NGKASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETR-GLKDSLQVENLQDQ 119
K S + + + Q F + V EF C+K ++L + GL+ Q E ++
Sbjct: 107 RMKESSFYSLCLTMWQIPQEFVKLQVSQEEFLCMKVLLLLNTIPLEGLRSQTQFEEMRSS 166
Query: 120 AQVMLAQHVRTHH---PAQPARFGRLLLMTSQCRNIPSARVQHI---FFAKTVANTSMEK 173
L + + + RF +L + ++ + F + +
Sbjct: 167 YIRELIKAIGLRQKGVVSSSQRFYQLTKLLDNLHDLVKQLHLYCLNTFIQSRALSVEFPE 226
Query: 174 LLCDMYKN 181
++ ++
Sbjct: 227 MMSEVIAA 234
>d1ie9a_ a.123.1.1 (A:) Vitamin D nuclear receptor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 255
Score = 109 bits (273), Expect = 2e-30
Identities = 31/181 (17%), Positives = 71/181 (39%), Gaps = 4/181 (2%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
+ +AK +P F L DQ++LL+ S E+ +L + + S N
Sbjct: 74 IGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSNESFTMDDMSWTCGNQDYKYRVSDVT 133
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
KA + + L + + + E L A+ + + G++D+ +E +QD+
Sbjct: 134 KAGHSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAALIEAIQDRLSN 193
Query: 123 MLAQHVRTHHP--AQPARFGRLLLMTSQCRNIPSARVQHIFFAK--TVANTSMEKLLCDM 178
L ++R HP + +++ + R++ + + + L+ ++
Sbjct: 194 TLQTYIRCRHPPPGSHLLYAKMIQKLADLRSLNEEHSKQYRCLSFQPECSMKLTPLVLEV 253
Query: 179 Y 179
+
Sbjct: 254 F 254
>d1n83a_ a.123.1.1 (A:) Orphan nuclear receptor ROR-alpha {Human
(Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 107 bits (267), Expect = 1e-29
Identities = 29/181 (16%), Positives = 68/181 (37%), Gaps = 8/181 (4%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
V++AK + F L DQ++LL+ E+ + + + A+
Sbjct: 75 VEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDS---QNNTVYFDGKYASPDVF 131
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
K+ + + + + + E A A VL ++ L++ +++E LQ + Q+
Sbjct: 132 KSLGCEDFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQL 191
Query: 123 MLAQHVRTHHPAQPARFGRLLLMTSQCRNIPSARVQHIFFAKT----VANTSMEKLLCDM 178
L ++ +H + +L+ S R + + + K + L ++
Sbjct: 192 ALQHVLQKNHR-EDGILTKLICKVSTLRALCGRHTEKLMAFKAIYPDIVRLHFPPLYKEL 250
Query: 179 Y 179
+
Sbjct: 251 F 251
>d1xnxa_ a.123.1.1 (A:) Orphan nuclear receptor NR1I3 (CAR) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 232
Score = 95.5 bits (237), Expect = 2e-25
Identities = 27/164 (16%), Positives = 67/164 (40%), Gaps = 4/164 (2%)
Query: 3 VKWAKNLPSFAALPFRDQVILLEESWSELFLLNAIQWSLPLLESSPLFNASEHVAAVPNG 62
+K+ K+LP F +L DQ+ LL+ + E+ ++ ++ F
Sbjct: 70 IKFTKDLPLFRSLTMEDQISLLKGAAVEILHISLNTTFCL--QTENFFCGPLCYKMEDAV 127
Query: 63 KASQTAADVRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQV 122
A + + + + + + E+ + A LF + G+ +++ LQ++ +
Sbjct: 128 HAGFQYEFLESILHFHKNLKGLHLQEPEYVLMAATALFSPDRPGVTQREEIDQLQEEMAL 187
Query: 123 MLAQHVRTHHPAQPAR--FGRLLLMTSQCRNIPSARVQHIFFAK 164
+L H+ +R + +L+ + + R+I +A + +
Sbjct: 188 ILNNHIMEQQSRLQSRFLYAKLMGLLADLRSINNAYSYELQRLE 231
>d1srqa_ e.55.1.1 (A:) Rap1 GTPase-activating protein 1, Rap1GAP
{Human (Homo sapiens) [TaxId: 9606]}
Length = 336
Score = 29.5 bits (66), Expect = 0.23
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 89 AEFACLKAVVLFKSETRGLKDSLQ--VENLQDQAQVML 124
AE+AC KA K E R L+ E L +Q M+
Sbjct: 295 AEYACYKAEKFAKLEERTRAALLETLYEELHIHSQSMM 332
>d1e32a3 d.31.1.1 (A:107-200) Membrane fusion atpase p97 domain 2,
P97-Nc {Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 25.0 bits (55), Expect = 3.0
Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 71 VRVLNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQD 118
VR ++ F++V DP+ + + + E +K + E+L +
Sbjct: 48 VRGGMRAVE-FKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNE 94
>d1muka_ e.8.1.4 (A:) Reovirus polymerase lambda3 {Reovirus [TaxId:
10891]}
Length = 1264
Score = 25.3 bits (55), Expect = 5.3
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 70 DVRVLNGVLQRFRLVGVDPAEF-ACLKAVVLFKSETRGLKDSLQVENLQ 117
DV ++ L R R +G D A L V L +SE L + ++++
Sbjct: 1119 DVNAIDSALLRLRTLGADKKALTAQLLMVGLQESEADALAGKIMLQDVN 1167
>d1xkpb1 d.198.1.1 (B:2-122) Chaperone protein SycN {Yersinia pestis
[TaxId: 632]}
Length = 121
Score = 23.6 bits (51), Expect = 9.7
Identities = 11/74 (14%), Positives = 25/74 (33%), Gaps = 10/74 (13%)
Query: 74 LNGVLQRFRLVGVDPAEFACLKAVVLFKSETRGLKDSLQVENLQDQAQVMLAQHVRTHHP 133
++ Q + P ++ + G +LQ+E + LA+ + H
Sbjct: 7 ISHFCQDLGVPTSSPLS-----PLIQLEMAQSG---TLQLEQHGATLTLWLARSLAWHRC 58
Query: 134 AQPARFGRLLLMTS 147
+ L +T+
Sbjct: 59 EDAMV--KALTLTA 70
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.132 0.390
Gapped
Lambda K H
0.267 0.0535 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 613,783
Number of extensions: 24356
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 36
Length of query: 181
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 101
Effective length of database: 1,309,196
Effective search space: 132228796
Effective search space used: 132228796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.5 bits)