BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17883
(195 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F8A|A Chain A, Cyclic Nucleotide Binding-Homology Domain From Mouse Eag1
Potassium Channel
Length = 160
Score = 160 bits (404), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 74/98 (75%), Positives = 81/98 (82%), Gaps = 7/98 (7%)
Query: 104 TDKVLNYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHT 163
T+KVL CPKDM+ADICVHLNRKVF EHPAFRLASDGCLRALAM F H APGDL+YH
Sbjct: 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHA 64
Query: 164 GESIDSLCFIVTGSLEVIQDDEVVAIL-------DLIW 194
GES+DSLCF+V+GSLEVIQDDEVVAIL D+ W
Sbjct: 65 GESVDSLCFVVSGSLEVIQDDEVVAILGKGDVFGDVFW 102
>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKT|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKV|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
Length = 212
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 97/142 (68%), Gaps = 4/142 (2%)
Query: 55 QQMTSATAKYHDMLNNVREFMKLHEVPKALSERVMDYVVSTWAMTKGLDTDKVLNYCPKD 114
Q+M S + YH ++++F+++H +PKAL++R+++ +TW++ G+D ++L P +
Sbjct: 5 QRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDE 64
Query: 115 MKADICVHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIV 174
++ADI +HLN+++ + P F AS GCLR+L++ S APG+ L G+++ ++ F+
Sbjct: 65 LRADIAMHLNKELL-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVC 123
Query: 175 TGSLEVIQDDEVVAIL---DLI 193
+GS+EV++D+ V+AIL DLI
Sbjct: 124 SGSMEVLKDNTVLAILGKGDLI 145
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 198
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 1/132 (0%)
Query: 57 MTSATAKYHDMLNNVREFMKLHEVPKALSERVMDYVVSTWAMTKGLDTDKVLNYCPKDMK 116
M S++ +Y + L V E+M+ ++P L +++DY + K D + + ++
Sbjct: 3 MDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREVSESIR 61
Query: 117 ADICVHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTG 176
D+ + R + P F A + + P D + G D + FI G
Sbjct: 62 QDVANYNCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQG 121
Query: 177 SLEVIQDDEVVA 188
+++I D V+A
Sbjct: 122 IVDIIMSDGVIA 133
>pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
pdb|3ETQ|B Chain B, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
Length = 204
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 1/123 (0%)
Query: 59 SATAKYHDMLNNVREFMKLHEVPKALSERVMDYVVSTWAMTKGLDTDKVLNYCPKDMKAD 118
S+ +Y + V ++M H++P +++ DY + K D D +L ++ +
Sbjct: 8 SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRY-QGKMFDEDSILGELNGPLREE 66
Query: 119 ICVHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSL 178
I NRK+ P F A + A+ PGD + G + FI G +
Sbjct: 67 IVNFNNRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVV 126
Query: 179 EVI 181
V+
Sbjct: 127 SVL 129
>pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp
pdb|1Q3E|B Chain B, Hcn2j 443-645 In The Presence Of Cgmp
Length = 207
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 1/125 (0%)
Query: 57 MTSATAKYHDMLNNVREFMKLHEVPKALSERVMDYVVSTWAMTKGLDTDKVLNYCPKDMK 116
M S+ +Y + V ++M H++P +++ DY + K D D +L ++
Sbjct: 4 MDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRY-QGKMFDEDSILGELNGPLR 62
Query: 117 ADICVHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTG 176
+I RK+ P F A + A+ PGD + G + FI G
Sbjct: 63 EEIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHG 122
Query: 177 SLEVI 181
+ V+
Sbjct: 123 VVSVL 127
>pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U11|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 1/125 (0%)
Query: 57 MTSATAKYHDMLNNVREFMKLHEVPKALSERVMDYVVSTWAMTKGLDTDKVLNYCPKDMK 116
M S+ +Y + V ++M H++P +R+ DY + K D + +L + ++
Sbjct: 7 MDSSRRQYQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRY-QGKMFDEESILGELSEPLR 65
Query: 117 ADICVHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTG 176
+I RK+ P F A + ++ PGD + G + FI G
Sbjct: 66 EEIINFNXRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHG 125
Query: 177 SLEVI 181
+ V+
Sbjct: 126 VVSVL 130
>pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State
pdb|3FFQ|B Chain B, Hcn2i 443-640 Apo-State
Length = 202
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 1/125 (0%)
Query: 57 MTSATAKYHDMLNNVREFMKLHEVPKALSERVMDYVVSTWAMTKGLDTDKVLNYCPKDMK 116
M S+ +Y + V ++M H++P +++ DY + K D D +L ++
Sbjct: 4 MDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRY-QGKMFDEDSILGELNGPLR 62
Query: 117 ADICVHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTG 176
+I RK+ P F A + A+ PGD + G + FI G
Sbjct: 63 EEIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHG 122
Query: 177 SLEVI 181
+ V+
Sbjct: 123 VVSVL 127
>pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 1/125 (0%)
Query: 57 MTSATAKYHDMLNNVREFMKLHEVPKALSERVMDYVVSTWAMTKGLDTDKVLNYCPKDMK 116
M S+ +Y + V ++M H++P +++ DY + K D D +L ++
Sbjct: 7 MDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRY-QGKMFDEDSILGELNGPLR 65
Query: 117 ADICVHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTG 176
+I RK+ P F A + A+ PGD + G + FI G
Sbjct: 66 EEIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHG 125
Query: 177 SLEVI 181
+ V+
Sbjct: 126 VVSVL 130
>pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|B Chain B, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|C Chain C, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|D Chain D, Hcn2-I 443-460 E502k In The Presence Of Camp
Length = 202
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 1/125 (0%)
Query: 57 MTSATAKYHDMLNNVREFMKLHEVPKALSERVMDYVVSTWAMTKGLDTDKVLNYCPKDMK 116
M S+ +Y + V ++M H++P +++ DY + K D D +L ++
Sbjct: 4 MDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRY-QGKMFDEDSILGELNGPLR 62
Query: 117 ADICVHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTG 176
I RK+ P F A + A+ PGD + G + FI G
Sbjct: 63 EKIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHG 122
Query: 177 SLEVI 181
+ V+
Sbjct: 123 VVSVL 127
>pdb|3T1C|A Chain A, Crystal Structure Of Nak Channel D66y Mutant
pdb|3T1C|B Chain B, Crystal Structure Of Nak Channel D66y Mutant
Length = 97
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 3 VTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHV 50
+ ALYF++ +T+VG+GN + +TD KIFTI + I L +FG +
Sbjct: 34 IDALYFSVVTLTTVGYGNFSPQTDFGKIFTILYIFIGIGL---VFGFI 78
>pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
pdb|2Q0A|B Chain B, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 200
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 49/123 (39%), Gaps = 1/123 (0%)
Query: 59 SATAKYHDMLNNVREFMKLHEVPKALSERVMDYVVSTWAMTKGLDTDKVLNYCPKDMKAD 118
S+ +Y + V ++M H++P +++ DY + K D D +L ++ +
Sbjct: 4 SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRY-QGKMFDEDSILGELNGPLREE 62
Query: 119 ICVHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSL 178
I RK+ P F A + A+ PGD + G + FI G +
Sbjct: 63 IVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVV 122
Query: 179 EVI 181
V+
Sbjct: 123 SVL 125
>pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U0Z|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 1/125 (0%)
Query: 57 MTSATAKYHDMLNNVREFMKLHEVPKALSERVMDYVVSTWAMTKGLDTDKVLNYCPKDMK 116
M S+ +Y + V ++M H++P + +++ DY + K D + +L+ ++
Sbjct: 7 MDSSRRQYQEKYKQVEQYMSFHKLPADMRQKIHDYYEHRY-QGKIFDEENILSELNDPLR 65
Query: 117 ADICVHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTG 176
+I RK+ P F A + A+ PGD + G + FI G
Sbjct: 66 EEIVNFNCRKLVATMPLFANADPNFVTAMLSKLRFEVFQPGDYIIREGAVGKKMYFIQHG 125
Query: 177 SLEVI 181
VI
Sbjct: 126 VAGVI 130
>pdb|3TET|A Chain A, Crystal Structure Of Nak2k Channel Y66f Mutant
pdb|3TET|B Chain B, Crystal Structure Of Nak2k Channel Y66f Mutant
Length = 97
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 3 VTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHV 50
+ ALYF++ +T+VGFG+ + +TD KIFTI + I +FG +
Sbjct: 34 IDALYFSVVTLTTVGFGDFSPQTDFGKIFTILYIFIGI---GLVFGFI 78
>pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus
Carrying The S672r Mutation
Length = 205
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 50/123 (40%), Gaps = 1/123 (0%)
Query: 59 SATAKYHDMLNNVREFMKLHEVPKALSERVMDYVVSTWAMTKGLDTDKVLNYCPKDMKAD 118
S+ +Y + V ++M H++P +R+ DY + K D + +L + ++ +
Sbjct: 3 SSRRQYQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRY-QGKMFDEESILGELSEPLREE 61
Query: 119 ICVHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSL 178
I RK+ P F A + ++ PGD + G + FI G +
Sbjct: 62 IINFNCRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVV 121
Query: 179 EVI 181
V+
Sbjct: 122 SVL 124
>pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human
Hcn4 Channel
Length = 220
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 50/123 (40%), Gaps = 1/123 (0%)
Query: 59 SATAKYHDMLNNVREFMKLHEVPKALSERVMDYVVSTWAMTKGLDTDKVLNYCPKDMKAD 118
S+ +Y + V ++M H++P +R+ DY + K D + +L + ++ +
Sbjct: 3 SSRRQYQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRY-QGKMFDEESILGELSEPLREE 61
Query: 119 ICVHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSL 178
I RK+ P F A + ++ PGD + G + FI G +
Sbjct: 62 IINFNCRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVV 121
Query: 179 EVI 181
V+
Sbjct: 122 SVL 124
>pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q43|B Chain B, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q5O|A Chain A, Hcn2j 443-645 In The Presence Of Camp, Selenomethionine
Derivative
Length = 207
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 47/125 (37%), Gaps = 1/125 (0%)
Query: 57 MTSATAKYHDMLNNVREFMKLHEVPKALSERVMDYVVSTWAMTKGLDTDKVLNYCPKDMK 116
M S+ +Y + V ++ H++P +++ DY + K D D +L ++
Sbjct: 4 MDSSRRQYQEKYKQVEQYXSFHKLPADFRQKIHDYYEHRY-QGKXFDEDSILGELNGPLR 62
Query: 117 ADICVHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTG 176
+I RK+ P F A + A PGD + G FI G
Sbjct: 63 EEIVNFNCRKLVASXPLFANADPNFVTAXLTKLKFEVFQPGDYIIREGTIGKKXYFIQHG 122
Query: 177 SLEVI 181
+ V+
Sbjct: 123 VVSVL 127
>pdb|3OUF|A Chain A, Structure Of A K+ Selective Nak Mutant
pdb|3OUF|B Chain B, Structure Of A K+ Selective Nak Mutant
Length = 97
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 3 VTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHV 50
+ ALYF++ +T+VG+G+ + +TD KIFTI + I L +FG +
Sbjct: 34 IDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGL---VFGFI 78
>pdb|3VOU|A Chain A, The Crystal Structure Of Nak-Navsulp Chimera Channel
pdb|3VOU|B Chain B, The Crystal Structure Of Nak-Navsulp Chimera Channel
Length = 148
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 5 ALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFG--HVTTIIQQMTSATA 62
ALYF++ +T+VG GN + +TD K+FTI + I L +FG H + Q+ S +
Sbjct: 56 ALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGL---VFGFIHKLAVNVQLPSILS 112
Query: 63 KYHDMLNNVR-EFM-KLHEVPKALSE 86
+ R E M KL + K L+E
Sbjct: 113 NRKKETDAYRLEVMEKLEAIEKKLAE 138
>pdb|2Q67|A Chain A, Crystal Structure Of Nak Channel D66a Mutant
pdb|2Q67|B Chain B, Crystal Structure Of Nak Channel D66a Mutant
Length = 114
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 3 VTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHV 50
+ ALYF++ +T+VG GN + +TD KIFTI + I +FG +
Sbjct: 51 IDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGI---GLVFGFI 95
>pdb|3TCU|A Chain A, Crystal Structure Of Nak2k Channel D68e Mutant
pdb|3TCU|B Chain B, Crystal Structure Of Nak2k Channel D68e Mutant
Length = 97
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 3 VTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHV 50
+ ALYF++ +T+VG+G + +TD KIFTI + I L +FG +
Sbjct: 34 IDALYFSVVTLTTVGYGEFSPQTDFGKIFTILYIFIGIGL---VFGFI 78
>pdb|2Q69|A Chain A, Crystal Structure Of Nak Channel D66n Mutant
pdb|2Q69|B Chain B, Crystal Structure Of Nak Channel D66n Mutant
Length = 114
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 3 VTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHV 50
+ ALYF++ +T+VG GN + +TD KIFTI + I +FG +
Sbjct: 51 IDALYFSVVTLTTVGNGNFSPQTDFGKIFTILYIFIGI---GLVFGFI 95
>pdb|3E83|A Chain A, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E83|B Chain B, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E86|A Chain A, High Resolution Crystal Structure Of The Open Nak
Channel Pore
pdb|3E86|B Chain B, High Resolution Crystal Structure Of The Open Nak
Channel Pore
pdb|3E89|A Chain A, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E89|B Chain B, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E8B|A Chain A, Crystal Structure Of The The Open Nak Channel- Rb+
Complex
pdb|3E8B|B Chain B, Crystal Structure Of The The Open Nak Channel- Rb+
Complex
pdb|3E8F|A Chain A, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8F|B Chain B, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8G|A Chain A, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8G|B Chain B, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8H|A Chain A, Crystal Structure Of The The Open Nak Channel-K+ Complex
pdb|3E8H|B Chain B, Crystal Structure Of The The Open Nak Channel-K+ Complex
Length = 96
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 3 VTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHV 50
+ ALYF++ +T+VG GN + +TD KIFTI + I L +FG +
Sbjct: 33 IDALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIGIGL---VFGFI 77
>pdb|2Q6A|A Chain A, Crystal Structure Of Nak Channel D66e Mutant
pdb|2Q6A|B Chain B, Crystal Structure Of Nak Channel D66e Mutant
Length = 114
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 3 VTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHV 50
+ ALYF++ +T+VG GN + +TD KIFTI + I +FG +
Sbjct: 51 IDALYFSVVTLTTVGEGNFSPQTDFGKIFTILYIFIGI---GLVFGFI 95
>pdb|2AHY|A Chain A, Na+ Complex Of The Nak Channel
pdb|2AHY|B Chain B, Na+ Complex Of The Nak Channel
pdb|2AHZ|A Chain A, K+ Complex Of The Nak Channel
pdb|2AHZ|B Chain B, K+ Complex Of The Nak Channel
Length = 110
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 3 VTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHV 50
+ ALYF++ +T+VG GN + +TD KIFTI + I +FG +
Sbjct: 51 IDALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIGI---GLVFGFI 95
>pdb|2Q68|A Chain A, Crystal Structure Of Nak Channel D66a, S70e Double
Mutants
pdb|2Q68|B Chain B, Crystal Structure Of Nak Channel D66a, S70e Double
Mutants
Length = 114
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 3 VTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHV 50
+ ALYF++ +T+VG GN +TD KIFTI + I +FG +
Sbjct: 51 IDALYFSVVTLTTVGAGNFEPQTDFGKIFTILYIFIGI---GLVFGFI 95
>pdb|3UM7|A Chain A, Crystal Structure Of The Human Two Pore Domain K+ Ion
Channel Traak (K2p4.1)
pdb|3UM7|B Chain B, Crystal Structure Of The Human Two Pore Domain K+ Ion
Channel Traak (K2p4.1)
pdb|4I9W|A Chain A, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
pdb|4I9W|B Chain B, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
Length = 309
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 4 TALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQMTSATAK 63
+A +F+ T +T++G+GNVA TD ++F I ++ L+ + V + ++
Sbjct: 118 SAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRL-----GSSL 172
Query: 64 YHDMLNNVREFMKLHEVPK 82
H + + F+K H P+
Sbjct: 173 RHGIGHIEAIFLKWHVPPE 191
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 5 ALYFTMTCMTSVGFGNVAAETDNEK 29
A+YF + +T+VGFG+ A D +
Sbjct: 228 AIYFVIVTLTTVGFGDYVAGADPRQ 252
>pdb|3T4D|A Chain A, Crystal Structure Of Nak2k Channel Y55f Mutant
pdb|3T4D|B Chain B, Crystal Structure Of Nak2k Channel Y55f Mutant
Length = 97
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 3 VTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHV 50
+ AL+F++ +T+VG+G+ + +TD KIFTI + I +FG +
Sbjct: 34 IDALFFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGI---GLVFGFI 78
>pdb|3T4Z|A Chain A, Crystal Structure Of Nak2k Channel Y55w Mutant
pdb|3T4Z|B Chain B, Crystal Structure Of Nak2k Channel Y55w Mutant
Length = 97
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 3 VTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHV 50
+ AL+F++ +T+VG+G+ + +TD KIFTI + I L +FG +
Sbjct: 34 IDALWFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGL---VFGFI 78
>pdb|3T2M|A Chain A, Crystal Structure Of Nak Channel N68d Mutant
pdb|3T2M|B Chain B, Crystal Structure Of Nak Channel N68d Mutant
Length = 97
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 3 VTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHV 50
+ ALYF++ +T+VG G+ + +TD KIFTI + I L +FG +
Sbjct: 34 IDALYFSVVTLTTVGDGDFSPQTDFGKIFTILYIFIGIGL---VFGFI 78
>pdb|4GX5|A Chain A, Gsuk Channel
pdb|4GX5|B Chain B, Gsuk Channel
pdb|4GX5|C Chain C, Gsuk Channel
pdb|4GX5|D Chain D, Gsuk Channel
Length = 565
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATI--FGHVTTIIQQMTS 59
++ +Y+T+T MT++GFG++ E+D +F + + + I FG V+ +
Sbjct: 52 FMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLLIILPFGFVSMFLAPWIE 111
Query: 60 ATAKYHDMLN 69
+YH +
Sbjct: 112 RRLRYHPTIE 121
>pdb|4GX0|A Chain A, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|B Chain B, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|C Chain C, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|D Chain D, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX1|A Chain A, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|B Chain B, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|C Chain C, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|D Chain D, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX2|A Chain A, Gsuk Channel Bound To Nad
pdb|4GX2|B Chain B, Gsuk Channel Bound To Nad
pdb|4GX2|C Chain C, Gsuk Channel Bound To Nad
pdb|4GX2|D Chain D, Gsuk Channel Bound To Nad
Length = 565
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATI---FGHVTTIIQQMT 58
++ +Y+T+T MT++GFG++ E+D +F ++ ++ +++ I FG V+ +
Sbjct: 52 FMAGIYWTITVMTTLGFGDITFESDAGYLFA-SIVTVSGVIFLDIILPFGFVSMFLAPWI 110
Query: 59 SATAKYHDMLN 69
+YH +
Sbjct: 111 ERRLRYHPTIE 121
>pdb|3UKM|A Chain A, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|B Chain B, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|C Chain C, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|D Chain D, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
Length = 280
Score = 30.4 bits (67), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQMT 58
+ +AL+F T +++ G+G+ +D K F I +I + + +F +T ++Q++T
Sbjct: 94 FTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVI-GIPFTLLF--LTAVVQRIT 147
>pdb|2A0L|A Chain A, Crystal Structure Of Kvap-33h1 Fv Complex
pdb|2A0L|B Chain B, Crystal Structure Of Kvap-33h1 Fv Complex
Length = 241
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 28/53 (52%)
Query: 5 ALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQM 57
AL++ + T+VG+G+V T K+ I +M+ + G V+ + Q++
Sbjct: 181 ALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQKI 233
>pdb|3K06|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
K+ Complex
pdb|3K06|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
K+ Complex
pdb|3K08|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
Na+ Complex
pdb|3K08|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
Na+ Complex
Length = 96
Score = 30.0 bits (66), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 5 ALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHV 50
ALYF++ +T+VG +TD KIFTI + I L +FG +
Sbjct: 36 ALYFSVVTLTTVG-NTPPPQTDFGKIFTILYIFIGIGL---VFGFI 77
>pdb|1ORQ|C Chain C, X-Ray Structure Of A Voltage-Dependent Potassium Channel
In Complex With An Fab
Length = 223
Score = 30.0 bits (66), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 28/53 (52%)
Query: 5 ALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQM 57
AL++ + T+VG+G+V T K+ I +M+ + G V+ + Q++
Sbjct: 169 ALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQKI 221
>pdb|3K03|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
K+ Complex
pdb|3K03|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
K+ Complex
pdb|3K04|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
Na+ Complex
pdb|3K04|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
Na+ Complex
Length = 96
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 3 VTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHV 50
+ ALYF++ +T+VG +TD KIFTI + I L +FG +
Sbjct: 34 IDALYFSVVTLTTVG-DTPPPQTDFGKIFTILYIFIGIGL---VFGFI 77
>pdb|3K0D|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
K+ Complex
pdb|3K0D|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
K+ Complex
pdb|3K0G|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
Na+ Complex
pdb|3K0G|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
Na+ Complex
Length = 96
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 5 ALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHV 50
ALYF++ +T+VG +TD KIFTI + I L +FG +
Sbjct: 36 ALYFSVVTLTTVG-ETPPPQTDFGKIFTILYIFIGIGL---VFGFI 77
>pdb|3RBZ|A Chain A, Mthk Channel, Ca2+-Bound
pdb|3RBZ|B Chain B, Mthk Channel, Ca2+-Bound
pdb|3RBZ|C Chain C, Mthk Channel, Ca2+-Bound
pdb|3RBZ|D Chain D, Mthk Channel, Ca2+-Bound
Length = 340
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/59 (22%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTII---QQM 57
+ +LY+T + +VG+G+ + T FT+ ++++ +A + T + +QM
Sbjct: 46 WTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIATFAVAVARLLTFLINREQM 104
>pdb|3FWE|A Chain A, Crystal Structure Of The Apo D138l Cap Mutant
pdb|3FWE|B Chain B, Crystal Structure Of The Apo D138l Cap Mutant
Length = 210
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 160 LYHTGESIDSLCFIVTGSLEVIQDDE 185
L H GE ++L +IV GS+ V+ DE
Sbjct: 30 LIHQGEKAETLYYIVKGSVAVLIKDE 55
>pdb|1HW5|A Chain A, The CapCRP VARIANT T127LS128A
pdb|1HW5|B Chain B, The CapCRP VARIANT T127LS128A
Length = 210
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 160 LYHTGESIDSLCFIVTGSLEVIQDDE 185
L H GE ++L +IV GS+ V+ DE
Sbjct: 30 LIHQGEKAETLYYIVKGSVAVLIKDE 55
>pdb|2CGP|A Chain A, Catabolite Gene Activator ProteinDNA COMPLEX,
ADENOSINE-3', 5'-Cyclic-Monophosphate
pdb|1G6N|A Chain A, 2.1 Angstrom Structure Of Cap-Camp
pdb|1G6N|B Chain B, 2.1 Angstrom Structure Of Cap-Camp
pdb|3HIF|A Chain A, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|B Chain B, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|C Chain C, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|D Chain D, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|E Chain E, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|F Chain F, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3RYP|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RYP|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RYR|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RYR|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
Length = 210
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 160 LYHTGESIDSLCFIVTGSLEVIQDDE 185
L H GE ++L +IV GS+ V+ DE
Sbjct: 30 LIHQGEKAETLYYIVKGSVAVLIKDE 55
>pdb|3QOP|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3QOP|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RDI|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RDI|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3ROU|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3ROU|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RPQ|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RPQ|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
Length = 210
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 160 LYHTGESIDSLCFIVTGSLEVIQDDE 185
L H GE ++L +IV GS+ V+ DE
Sbjct: 30 LIHQGEKAETLYYIVKGSVAVLIKDE 55
>pdb|1RUO|A Chain A, Catabolite Gene Activator Protein (Cap) MutantDNA COMPLEX
+ Adenosine-3',5'-Cyclic-Monophosphate
pdb|1RUO|B Chain B, Catabolite Gene Activator Protein (Cap) MutantDNA COMPLEX
+ Adenosine-3',5'-Cyclic-Monophosphate
Length = 209
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 160 LYHTGESIDSLCFIVTGSLEVIQDDE 185
L H GE ++L +IV GS+ V+ DE
Sbjct: 29 LIHQGEKAETLYYIVKGSVAVLIKDE 54
>pdb|1RUN|A Chain A, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1RUN|B Chain B, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1J59|A Chain A, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1J59|B Chain B, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1LB2|A Chain A, Structure Of The E. Coli Alpha C-Terminal Domain Of Rna
Polymerase In Complex With Cap And Dna
pdb|1I5Z|A Chain A, Structure Of Crp-Camp At 1.9 A
pdb|1I5Z|B Chain B, Structure Of Crp-Camp At 1.9 A
pdb|1ZRC|A Chain A, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-Icap38 Dna
pdb|1ZRC|B Chain B, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-Icap38 Dna
pdb|1ZRD|A Chain A, 4 Crystal Structures Of Cap-dna With All Base-pair
Substitutions At Position 6, Cap-[6a;17t]icap38 Dna
pdb|1ZRD|B Chain B, 4 Crystal Structures Of Cap-dna With All Base-pair
Substitutions At Position 6, Cap-[6a;17t]icap38 Dna
pdb|1ZRE|A Chain A, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-[6g;17c]icap38 Dna
pdb|1ZRE|B Chain B, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-[6g;17c]icap38 Dna
pdb|1ZRF|A Chain A, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-[6c;17g]icap38 Dna
pdb|1ZRF|B Chain B, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-[6c;17g]icap38 Dna
pdb|2GZW|A Chain A, Crystal Structure Of The E.coli Crp-camp Complex
pdb|2GZW|B Chain B, Crystal Structure Of The E.coli Crp-camp Complex
pdb|2GZW|C Chain C, Crystal Structure Of The E.coli Crp-camp Complex
pdb|2GZW|D Chain D, Crystal Structure Of The E.coli Crp-camp Complex
pdb|2WC2|A Chain A, Nmr Structure Of Catabolite Activator Protein In The
Unliganded State
pdb|2WC2|B Chain B, Nmr Structure Of Catabolite Activator Protein In The
Unliganded State
pdb|3IYD|G Chain G, Three-Dimensional Em Structure Of An Intact
Activator-Dependent Transcription Initiation Complex
pdb|3IYD|H Chain H, Three-Dimensional Em Structure Of An Intact
Activator-Dependent Transcription Initiation Complex
pdb|3N4M|A Chain A, E. Coli Rna Polymerase Alpha Subunit C-Terminal Domain In
Complex With Cap And Dna
Length = 209
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 160 LYHTGESIDSLCFIVTGSLEVIQDDE 185
L H GE ++L +IV GS+ V+ DE
Sbjct: 29 LIHQGEKAETLYYIVKGSVAVLIKDE 54
>pdb|1CGP|A Chain A, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1CGP|B Chain B, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
Length = 205
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 160 LYHTGESIDSLCFIVTGSLEVIQDDE 185
L H GE ++L +IV GS+ V+ DE
Sbjct: 29 LIHQGEKAETLYYIVKGSVAVLIKDE 54
>pdb|1O3Q|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
pdb|1O3R|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
pdb|1O3T|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
pdb|1O3T|B Chain B, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
Length = 200
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 160 LYHTGESIDSLCFIVTGSLEVIQDDE 185
L H GE ++L +IV GS+ V+ DE
Sbjct: 22 LIHQGEKAETLYYIVKGSVAVLIKDE 47
>pdb|1O3S|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
Length = 200
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 160 LYHTGESIDSLCFIVTGSLEVIQDDE 185
L H GE ++L +IV GS+ V+ DE
Sbjct: 22 LIHQGEKAETLYYIVKGSVAVLIKDE 47
>pdb|3KCC|A Chain A, Crystal Structure Of D138l Mutant Of Catabolite Gene
Activator Protein
pdb|3KCC|B Chain B, Crystal Structure Of D138l Mutant Of Catabolite Gene
Activator Protein
Length = 260
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 160 LYHTGESIDSLCFIVTGSLEVIQDDE 185
L H GE ++L +IV GS+ V+ DE
Sbjct: 80 LIHQGEKAETLYYIVKGSVAVLIKDE 105
>pdb|3V2U|A Chain A, Crystal Structure Of The Yeast Gal Regulon Complex Of The
Repressor, Gal80p, And The Transducer, Gal3p, With
Galactose And Atp
pdb|3V2U|B Chain B, Crystal Structure Of The Yeast Gal Regulon Complex Of The
Repressor, Gal80p, And The Transducer, Gal3p, With
Galactose And Atp
Length = 438
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 42 LYATIFGHVTTIIQQMTSAT-AKYHDML-NNVREFMKLHEVPKALSERV 88
L T FGH I+Q MTS+ ++ + M+ NN+ E + E L +RV
Sbjct: 209 LVTTTFGHTIDILQYMTSSYFSRINAMVFNNIPEQELIDERGNRLGQRV 257
>pdb|3BTU|A Chain A, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S2) [e351k]
pdb|3BTU|B Chain B, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S2) [e351k]
pdb|3BTU|C Chain C, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S2) [e351k]
pdb|3BTU|D Chain D, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S2) [e351k]
pdb|3BTU|E Chain E, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S2) [e351k]
pdb|3BTU|F Chain F, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S2) [e351k]
Length = 438
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 42 LYATIFGHVTTIIQQMTSAT-AKYHDML-NNVREFMKLHEVPKALSERV 88
L T FGH I+Q MTS+ ++ + M+ NN+ E + E L +RV
Sbjct: 209 LVTTTFGHTIDILQYMTSSYFSRINAMVFNNIPEQELIDERGNRLGQRV 257
>pdb|3BTS|A Chain A, Crystal Structure Of A Ternary Complex Of The
Transcriptional Repressor Gal80p (Gal80s0 [g301r]) And
The Acidic Activation Domain Of Gal4p (Aa 854-874) From
Saccharomyces Cerevisiae With Nad
pdb|3BTS|B Chain B, Crystal Structure Of A Ternary Complex Of The
Transcriptional Repressor Gal80p (Gal80s0 [g301r]) And
The Acidic Activation Domain Of Gal4p (Aa 854-874) From
Saccharomyces Cerevisiae With Nad
pdb|3BTV|A Chain A, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S0)-[g301r]
pdb|3BTV|B Chain B, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S0)-[g301r]
Length = 438
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 42 LYATIFGHVTTIIQQMTSAT-AKYHDML-NNVREFMKLHEVPKALSERV 88
L T FGH I+Q MTS+ ++ + M+ NN+ E + E L +RV
Sbjct: 209 LVTTTFGHTIDILQYMTSSYFSRINAMVFNNIPEQELIDERGNRLGQRV 257
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,302,425
Number of Sequences: 62578
Number of extensions: 192737
Number of successful extensions: 735
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 695
Number of HSP's gapped (non-prelim): 54
length of query: 195
length of database: 14,973,337
effective HSP length: 94
effective length of query: 101
effective length of database: 9,091,005
effective search space: 918191505
effective search space used: 918191505
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.5 bits)