Query psy17883
Match_columns 195
No_of_seqs 124 out of 1874
Neff 9.6
Searched_HMMs 46136
Date Fri Aug 16 16:35:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17883.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17883hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498|consensus 100.0 1.5E-47 3.2E-52 324.4 21.4 194 2-195 295-492 (727)
2 KOG0500|consensus 100.0 3.9E-42 8.5E-47 274.5 18.7 192 2-194 184-377 (536)
3 PLN03192 Voltage-dependent pot 100.0 9.2E-41 2E-45 294.8 21.5 193 2-195 251-447 (823)
4 KOG0499|consensus 100.0 2.5E-36 5.3E-41 245.7 13.6 192 1-193 403-597 (815)
5 KOG0501|consensus 100.0 1.3E-35 2.8E-40 241.5 16.6 194 1-194 423-616 (971)
6 PF07885 Ion_trans_2: Ion chan 99.3 3.4E-12 7.4E-17 81.4 4.5 54 2-55 25-78 (79)
7 KOG3713|consensus 99.1 8.1E-11 1.7E-15 96.0 5.8 64 4-67 380-443 (477)
8 KOG1113|consensus 98.9 3E-09 6.5E-14 83.5 7.4 72 124-195 120-191 (368)
9 KOG0614|consensus 98.9 1.9E-09 4.1E-14 88.8 5.3 74 122-195 268-347 (732)
10 KOG1419|consensus 98.9 2.8E-09 6E-14 88.0 6.1 86 2-94 270-355 (654)
11 KOG0614|consensus 98.7 1.8E-08 3.9E-13 83.2 5.7 82 112-193 140-221 (732)
12 PLN02868 acyl-CoA thioesterase 98.7 5.2E-08 1.1E-12 80.8 8.4 70 125-194 7-80 (413)
13 smart00100 cNMP Cyclic nucleot 98.7 7.1E-08 1.5E-12 64.9 6.9 51 133-183 1-51 (120)
14 PRK10537 voltage-gated potassi 98.7 4.5E-08 9.6E-13 80.3 6.9 53 2-54 169-221 (393)
15 cd00038 CAP_ED effector domain 98.6 1.3E-07 2.7E-12 63.3 7.1 52 133-184 1-52 (115)
16 PRK09392 ftrB transcriptional 98.6 1.4E-07 3.1E-12 72.2 7.6 58 125-182 6-63 (236)
17 KOG3684|consensus 98.6 1E-07 2.3E-12 77.3 6.9 88 2-97 288-375 (489)
18 KOG1418|consensus 98.5 1.4E-07 3E-12 77.9 6.1 58 2-59 116-173 (433)
19 KOG1420|consensus 98.5 7.5E-08 1.6E-12 80.3 2.1 126 2-136 289-418 (1103)
20 KOG1545|consensus 98.4 6.9E-09 1.5E-13 81.8 -4.7 53 4-56 396-448 (507)
21 KOG1113|consensus 98.3 5.5E-07 1.2E-11 71.0 4.2 75 121-195 235-310 (368)
22 COG2905 Predicted signal-trans 98.3 2.3E-06 4.9E-11 71.5 7.3 69 125-193 6-75 (610)
23 PRK11753 DNA-binding transcrip 98.2 5.5E-06 1.2E-10 62.2 6.8 48 135-182 6-53 (211)
24 KOG4390|consensus 98.2 1.3E-07 2.8E-12 75.5 -2.4 52 4-55 359-410 (632)
25 COG0664 Crp cAMP-binding prote 98.1 1.6E-05 3.4E-10 59.3 7.0 66 129-194 3-73 (214)
26 PRK11161 fumarate/nitrate redu 98.1 1.2E-05 2.7E-10 61.4 6.5 55 128-182 15-70 (235)
27 KOG4404|consensus 98.0 1.1E-05 2.5E-10 63.0 4.6 51 2-52 81-131 (350)
28 KOG4404|consensus 97.9 1.7E-05 3.7E-10 62.0 5.4 59 1-59 186-252 (350)
29 PF00027 cNMP_binding: Cyclic 97.8 4.3E-05 9.3E-10 49.0 4.9 32 152-183 2-33 (91)
30 PRK10402 DNA-binding transcrip 97.7 5.5E-05 1.2E-09 57.6 4.7 42 141-182 23-64 (226)
31 KOG1418|consensus 97.3 0.00023 5E-09 58.8 3.9 46 2-47 243-296 (433)
32 PRK09391 fixK transcriptional 97.2 0.00062 1.3E-08 52.0 4.9 39 144-182 33-71 (230)
33 PF01007 IRK: Inward rectifier 97.0 0.00056 1.2E-08 55.1 3.2 55 2-56 85-141 (336)
34 KOG3542|consensus 96.8 0.0026 5.7E-08 54.8 5.4 74 121-194 276-350 (1283)
35 KOG3193|consensus 95.1 0.019 4.1E-07 48.7 3.0 43 3-45 219-261 (1087)
36 KOG3542|consensus 94.5 0.034 7.4E-07 48.3 3.0 71 112-182 23-93 (1283)
37 KOG2968|consensus 94.4 0.017 3.7E-07 51.5 1.2 44 139-182 498-541 (1158)
38 PF08006 DUF1700: Protein of u 94.4 0.45 9.7E-06 34.9 8.5 58 65-124 4-65 (181)
39 COG4709 Predicted membrane pro 93.3 0.78 1.7E-05 33.7 7.7 78 66-145 5-86 (195)
40 KOG2968|consensus 92.8 0.3 6.5E-06 44.0 5.9 52 142-193 108-164 (1158)
41 PF05899 Cupin_3: Protein of u 92.1 0.56 1.2E-05 29.0 5.1 38 155-194 15-52 (74)
42 PF00060 Lig_chan: Ligand-gate 92.0 0.095 2E-06 36.7 1.7 69 4-78 47-115 (148)
43 PF07883 Cupin_2: Cupin domain 91.8 0.37 8.1E-06 29.0 4.1 41 152-193 3-44 (71)
44 KOG3827|consensus 91.8 0.31 6.8E-06 39.6 4.5 55 2-56 113-169 (400)
45 PF07697 7TMR-HDED: 7TM-HD ext 83.4 16 0.00034 27.3 9.1 59 109-168 146-207 (222)
46 PF14377 DUF4414: Domain of un 83.3 3.3 7.3E-05 27.6 4.7 44 79-122 52-105 (108)
47 PF13314 DUF4083: Domain of un 82.2 7.8 0.00017 22.6 5.7 27 50-76 27-56 (58)
48 KOG0498|consensus 81.0 18 0.0004 32.6 9.5 46 109-154 371-421 (727)
49 COG3450 Predicted enzyme of th 78.8 6.9 0.00015 26.6 5.0 38 155-194 53-90 (116)
50 PRK11832 putative DNA-binding 78.6 7.5 0.00016 29.3 5.6 46 140-185 13-59 (207)
51 COG1917 Uncharacterized conser 75.5 5 0.00011 27.5 3.8 45 149-194 45-90 (131)
52 PF10011 DUF2254: Predicted me 75.5 12 0.00025 31.0 6.5 72 2-73 101-172 (371)
53 PRK13290 ectC L-ectoine syntha 75.3 6.8 0.00015 27.0 4.3 46 149-194 37-83 (125)
54 PF04831 Popeye: Popeye protei 71.4 27 0.00059 24.9 6.5 56 136-191 14-71 (153)
55 COG0662 {ManC} Mannose-6-phosp 69.6 14 0.00029 25.4 4.8 40 146-185 35-75 (127)
56 PRK09108 type III secretion sy 69.2 24 0.00051 29.0 6.8 72 23-94 174-245 (353)
57 PRK12721 secretion system appa 68.3 24 0.00052 28.9 6.6 73 23-95 172-244 (349)
58 PRK13109 flhB flagellar biosyn 68.3 25 0.00055 28.9 6.8 72 23-94 181-252 (358)
59 TIGR00328 flhB flagellar biosy 66.7 28 0.0006 28.5 6.7 72 23-94 172-243 (347)
60 TIGR01404 FlhB_rel_III type II 64.5 32 0.00069 28.1 6.7 73 23-95 171-243 (342)
61 KOG1054|consensus 64.0 4.5 9.8E-05 35.2 1.8 52 3-55 597-648 (897)
62 PRK05702 flhB flagellar biosyn 63.8 33 0.00072 28.2 6.7 72 23-94 179-250 (359)
63 PRK08156 type III secretion sy 63.5 28 0.0006 28.7 6.1 73 23-95 167-239 (361)
64 PRK12468 flhB flagellar biosyn 62.9 28 0.0006 29.0 6.1 73 23-95 179-251 (386)
65 PRK06298 type III secretion sy 59.9 44 0.00095 27.5 6.7 70 27-96 177-246 (356)
66 PRK07668 hypothetical protein; 59.1 56 0.0012 25.5 6.8 61 62-122 4-66 (254)
67 KOG3676|consensus 58.1 88 0.0019 28.5 8.5 75 14-89 601-682 (782)
68 PRK12772 bifunctional flagella 58.0 42 0.00091 29.8 6.7 71 25-95 437-507 (609)
69 COG1377 FlhB Flagellar biosynt 53.3 78 0.0017 26.1 7.0 69 27-95 183-251 (363)
70 PF02037 SAP: SAP domain; Int 52.9 32 0.00068 17.7 3.9 26 67-92 5-35 (35)
71 COG5559 Uncharacterized conser 51.3 23 0.0005 20.8 2.7 23 77-99 8-30 (65)
72 PF11151 DUF2929: Protein of u 49.5 14 0.00031 21.6 1.7 17 2-18 3-19 (57)
73 smart00835 Cupin_1 Cupin. This 48.3 32 0.0007 24.0 3.8 37 147-183 30-67 (146)
74 KOG1052|consensus 47.7 33 0.00072 30.5 4.6 51 5-56 385-435 (656)
75 PRK12773 flhB flagellar biosyn 47.3 89 0.0019 27.8 6.8 74 23-96 470-543 (646)
76 PHA00672 hypothetical protein 46.4 43 0.00094 23.1 3.9 40 148-188 48-87 (152)
77 PF13623 SurA_N_2: SurA N-term 46.4 55 0.0012 23.1 4.7 45 33-77 10-67 (145)
78 TIGR03214 ura-cupin putative a 45.1 37 0.0008 26.5 4.0 45 150-195 61-107 (260)
79 PF14841 FliG_M: FliG middle d 44.4 50 0.0011 20.5 3.8 39 106-152 31-69 (79)
80 PF06971 Put_DNA-bind_N: Putat 43.2 62 0.0014 18.3 4.6 42 78-119 1-49 (50)
81 PF07146 DUF1389: Protein of u 42.6 1.8E+02 0.004 23.5 10.2 79 76-154 35-141 (314)
82 PRK09174 F0F1 ATP synthase sub 42.5 1.4E+02 0.0031 22.3 8.1 30 21-50 44-73 (204)
83 COG4792 EscU Type III secretor 42.5 1.3E+02 0.0027 24.3 6.4 51 42-92 192-242 (349)
84 PF01484 Col_cuticle_N: Nemato 40.9 65 0.0014 17.9 7.0 28 42-69 20-47 (53)
85 PF01312 Bac_export_2: FlhB Hr 40.8 35 0.00077 27.8 3.4 71 23-93 174-244 (343)
86 PF10929 DUF2811: Protein of u 40.2 57 0.0012 19.1 3.2 28 78-109 4-31 (57)
87 KOG4440|consensus 39.6 18 0.0004 31.9 1.6 52 4-55 616-667 (993)
88 PLN03223 Polycystin cation cha 39.2 3E+02 0.0066 27.3 9.2 25 106-130 1491-1515(1634)
89 PF10330 Stb3: Putative Sin3 b 38.9 87 0.0019 20.2 4.2 39 107-150 15-54 (92)
90 PF15065 NCU-G1: Lysosomal tra 38.7 15 0.00033 30.1 1.0 43 14-56 303-345 (350)
91 PRK11171 hypothetical protein; 38.6 68 0.0015 25.1 4.6 45 148-193 185-230 (266)
92 PRK11171 hypothetical protein; 37.0 66 0.0014 25.2 4.3 45 149-194 63-109 (266)
93 PRK04190 glucose-6-phosphate i 36.7 1.1E+02 0.0023 22.8 5.1 35 149-183 70-113 (191)
94 COG3257 GlxB Uncharacterized p 36.0 75 0.0016 24.3 4.1 32 163-195 79-110 (264)
95 PF10047 DUF2281: Protein of u 35.7 40 0.00087 20.2 2.3 23 77-99 9-31 (66)
96 PF14633 SH2_2: SH2 domain; PD 35.5 84 0.0018 24.0 4.4 42 126-172 33-75 (220)
97 TIGR03214 ura-cupin putative a 35.5 58 0.0012 25.4 3.7 48 146-194 178-226 (260)
98 KOG3300|consensus 35.0 1.6E+02 0.0034 20.5 6.2 71 30-112 35-105 (146)
99 TIGR03037 anthran_nbaC 3-hydro 34.7 80 0.0017 22.8 4.0 38 155-193 36-77 (159)
100 PRK09943 DNA-binding transcrip 34.2 96 0.0021 22.5 4.6 41 153-194 113-154 (185)
101 COG1615 Uncharacterized conser 34.2 47 0.001 30.0 3.3 37 11-47 220-256 (885)
102 smart00511 ORANGE Orange domai 33.9 83 0.0018 17.0 5.5 36 61-96 4-40 (45)
103 PLN03192 Voltage-dependent pot 32.7 4E+02 0.0088 24.6 9.5 42 109-150 327-372 (823)
104 PF10163 EnY2: Transcription f 32.2 1.3E+02 0.0028 19.0 4.4 47 75-123 27-81 (86)
105 PRK11032 hypothetical protein; 32.1 2E+02 0.0043 20.8 5.9 25 152-176 112-140 (160)
106 TIGR03404 bicupin_oxalic bicup 32.0 94 0.002 25.7 4.5 47 148-194 246-297 (367)
107 COG1226 Kch Kef-type K+ transp 31.9 54 0.0012 23.4 3.0 41 2-42 118-158 (212)
108 PRK06771 hypothetical protein; 31.8 1.5E+02 0.0032 19.3 7.6 35 43-77 14-48 (93)
109 PRK09109 motC flagellar motor 31.6 2.5E+02 0.0053 21.8 9.8 65 28-92 181-245 (246)
110 PF06249 EutQ: Ethanolamine ut 31.2 88 0.0019 22.4 3.7 18 168-185 96-113 (152)
111 TIGR00933 2a38 potassium uptak 31.1 19 0.00041 29.8 0.4 39 4-42 234-274 (390)
112 cd07070 NR_LBD_SF-1 The ligand 31.0 2.2E+02 0.0048 21.8 6.2 63 82-148 16-78 (237)
113 COG1480 Predicted membrane-ass 30.7 4.1E+02 0.0089 24.1 8.8 33 136-168 223-255 (700)
114 PF08475 Baculo_VP91_N: Viral 30.0 88 0.0019 23.1 3.6 23 56-78 20-42 (183)
115 PF14131 DUF4298: Domain of un 29.4 28 0.0006 22.4 0.9 38 62-99 10-48 (90)
116 PRK14469 ribosomal RNA large s 29.2 1.6E+02 0.0034 24.0 5.4 51 67-122 8-58 (343)
117 smart00513 SAP Putative DNA-bi 29.2 61 0.0013 16.5 2.1 24 68-91 6-34 (35)
118 PF08294 TIM21: TIM21; InterP 29.0 59 0.0013 23.0 2.6 43 31-73 10-52 (145)
119 PF14163 SieB: Superinfection 28.2 2.1E+02 0.0046 20.0 7.0 51 41-93 42-92 (151)
120 PF14453 ThiS-like: ThiS-like 28.1 90 0.0019 18.3 2.8 26 151-176 23-57 (57)
121 COG3837 Uncharacterized conser 27.7 1.1E+02 0.0024 22.0 3.7 24 162-185 59-82 (161)
122 PRK14465 ribosomal RNA large s 27.5 1.8E+02 0.0039 23.8 5.4 51 67-122 11-61 (342)
123 TIGR02433 lysidine_TilS_C tRNA 26.9 39 0.00083 18.4 1.1 19 69-87 21-39 (47)
124 PRK14456 ribosomal RNA large s 26.9 1.9E+02 0.0041 24.0 5.5 51 67-122 24-74 (368)
125 PRK11677 hypothetical protein; 26.8 2.3E+02 0.0049 19.8 8.0 9 85-93 49-57 (134)
126 PHA01757 hypothetical protein 26.4 1.7E+02 0.0038 18.4 6.4 47 25-72 4-50 (98)
127 COG3057 SeqA Negative regulato 26.3 71 0.0015 22.7 2.5 26 66-91 155-180 (181)
128 PRK14463 ribosomal RNA large s 26.0 1.6E+02 0.0035 24.1 4.9 51 67-122 11-61 (349)
129 PRK14470 ribosomal RNA large s 25.7 2.3E+02 0.0051 23.1 5.8 50 68-123 6-55 (336)
130 COG5560 UBP12 Ubiquitin C-term 25.6 2.7E+02 0.0058 25.1 6.2 106 76-182 330-438 (823)
131 PF11699 CENP-C_C: Mif2/CENP-C 25.2 1.8E+02 0.0038 18.5 4.0 17 169-185 35-51 (85)
132 PF13980 UPF0370: Uncharacteri 25.1 1.2E+02 0.0027 17.8 2.9 18 28-45 6-23 (63)
133 PF13128 DUF3954: Protein of u 25.0 87 0.0019 17.8 2.2 16 167-182 9-24 (50)
134 PF09153 DUF1938: Domain of un 24.8 1.8E+02 0.0038 18.5 3.8 35 64-98 37-71 (86)
135 cd07313 terB_like_2 tellurium 24.7 2E+02 0.0043 18.4 8.1 58 66-125 19-81 (104)
136 PF11694 DUF3290: Protein of u 24.6 2.6E+02 0.0057 19.9 7.0 8 86-93 79-86 (149)
137 PRK14457 ribosomal RNA large s 24.5 2E+02 0.0044 23.5 5.2 50 67-121 8-57 (345)
138 PRK14453 chloramphenicol/florf 24.4 2.7E+02 0.0058 22.8 5.9 51 68-123 7-57 (347)
139 PF13107 DUF3964: Protein of u 24.3 89 0.0019 20.3 2.5 39 126-164 4-42 (109)
140 PRK14459 ribosomal RNA large s 24.2 2.5E+02 0.0053 23.4 5.7 52 67-123 28-79 (373)
141 PRK13264 3-hydroxyanthranilate 24.1 2E+02 0.0044 21.2 4.6 39 155-194 42-84 (177)
142 PRK14455 ribosomal RNA large s 23.8 2.2E+02 0.0049 23.4 5.4 51 67-122 17-67 (356)
143 PF04814 HNF-1_N: Hepatocyte n 23.7 1.6E+02 0.0034 21.8 3.9 26 69-94 121-150 (180)
144 TIGR01479 GMP_PMI mannose-1-ph 23.6 1.7E+02 0.0037 25.0 4.8 43 150-193 379-422 (468)
145 PF08566 Pam17: Mitochondrial 23.4 2.3E+02 0.0051 20.7 4.8 28 23-50 70-97 (173)
146 KOG2568|consensus 23.4 2.9E+02 0.0062 24.1 6.0 47 6-54 283-329 (518)
147 PRK00423 tfb transcription ini 23.3 3.9E+02 0.0085 21.4 7.2 90 61-151 119-232 (310)
148 PF14490 HHH_4: Helix-hairpin- 22.9 1.5E+02 0.0032 19.0 3.4 28 66-93 6-33 (94)
149 PF01050 MannoseP_isomer: Mann 22.7 1.9E+02 0.0042 20.5 4.3 39 147-185 63-102 (151)
150 PRK14461 ribosomal RNA large s 22.7 2.4E+02 0.0053 23.4 5.3 51 67-122 14-64 (371)
151 KOG4069|consensus 22.3 2.7E+02 0.0057 19.4 4.6 19 60-78 99-117 (154)
152 PRK14467 ribosomal RNA large s 22.2 2.6E+02 0.0055 23.0 5.4 51 67-122 8-58 (348)
153 PRK00378 nucleoid-associated p 22.2 3.4E+02 0.0073 21.9 6.1 56 60-115 194-253 (334)
154 PF07527 Hairy_orange: Hairy O 21.9 1.5E+02 0.0032 15.9 5.7 35 61-95 4-39 (43)
155 PRK14460 ribosomal RNA large s 21.5 2.6E+02 0.0057 22.9 5.4 51 67-122 8-59 (354)
156 PF02330 MAM33: Mitochondrial 21.5 2.5E+02 0.0055 20.8 4.9 30 67-96 160-189 (204)
157 PF13348 Y_phosphatase3C: Tyro 21.4 1.9E+02 0.0041 17.0 4.4 31 62-92 36-67 (68)
158 PRK13481 glycosyltransferase; 21.4 1.9E+02 0.0042 22.3 4.2 38 72-109 45-82 (232)
159 PF13720 Acetyltransf_11: Udp 21.3 1E+02 0.0022 19.4 2.3 26 75-100 23-48 (83)
160 PF03579 SHP: Small hydrophobi 21.2 1.9E+02 0.0041 17.0 4.4 27 30-56 17-43 (64)
161 PLN02804 chalcone isomerase 21.2 2.4E+02 0.0053 21.3 4.6 46 118-163 101-146 (206)
162 PF02268 TFIIA_gamma_N: Transc 21.1 1.7E+02 0.0038 16.5 3.7 27 68-94 16-42 (49)
163 COG1422 Predicted membrane pro 20.9 3.7E+02 0.0081 20.2 7.0 18 60-77 73-90 (201)
164 PF10737 GerPC: Spore germinat 20.8 2.4E+02 0.0052 20.7 4.5 87 42-132 88-175 (176)
165 PRK14454 ribosomal RNA large s 20.7 2.9E+02 0.0063 22.6 5.4 51 67-122 8-58 (342)
166 PF02285 COX8: Cytochrome oxid 20.6 1.7E+02 0.0037 16.2 3.8 28 23-50 9-37 (44)
167 PF13867 SAP30_Sin3_bdg: Sin3 20.4 1.8E+02 0.004 16.5 4.5 36 69-109 4-46 (53)
168 PF05992 SbmA_BacA: SbmA/BacA- 20.4 4E+02 0.0086 21.6 5.9 46 29-74 165-210 (315)
169 TIGR00048 radical SAM enzyme, 20.3 2.7E+02 0.0059 22.9 5.2 51 67-122 13-63 (355)
170 PRK11194 ribosomal RNA large s 20.2 3E+02 0.0066 22.8 5.5 51 67-122 12-62 (372)
171 PF08730 Rad33: Rad33; InterP 20.1 2.7E+02 0.0058 20.3 4.5 32 67-98 31-62 (170)
No 1
>KOG0498|consensus
Probab=100.00 E-value=1.5e-47 Score=324.45 Aligned_cols=194 Identities=35% Similarity=0.609 Sum_probs=190.8
Q ss_pred ceehhhhhhhheeeeecCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q psy17883 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQMTSATAKYHDMLNNVREFMKLHEVP 81 (195)
Q Consensus 2 Y~~sly~~~~tl~t~gygdi~p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~ 81 (195)
|++||||++++|+|+|||+++|.|..|++|+|++|++|.+++|++||+++.+++....+..+|+.++.++++||++|++|
T Consensus 295 Y~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP 374 (727)
T KOG0498|consen 295 YVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLP 374 (727)
T ss_pred HHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHhHHHhhCCHhHHHHHHHHHhHHHhhcCCccccCChHHHHHHhhhcccccccCCceeE
Q psy17883 82 KALSERVMDYVVSTWAMTKGLDTDKVLNYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLY 161 (195)
Q Consensus 82 ~~l~~rv~~y~~~~~~~~~~~~~~~il~~lp~~L~~~i~~~~~~~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~ 161 (195)
+.|++|+++|++++|+.++|.|+++++++||+.||.+|.++++.++++++|+|+++++.++.+|+.+++.++|.|||+|+
T Consensus 375 ~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~ii 454 (727)
T KOG0498|consen 375 PDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYII 454 (727)
T ss_pred HHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCeEEEEEeeeEEEEeCC----cEEEEeecccC
Q psy17883 162 HTGESIDSLCFIVTGSLEVIQDD----EVVAILDLIWY 195 (195)
Q Consensus 162 ~~g~~~~~~y~i~~G~v~v~~~~----~~~~~l~~~~~ 195 (195)
++||+.++||||.+|.+++.+.+ .+++.|+.|+|
T Consensus 455 reGd~v~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~ 492 (727)
T KOG0498|consen 455 REGDPVTDMYFIVRGSLESITTDGGGFFVVAILGPGDF 492 (727)
T ss_pred ecCCccceeEEEEeeeEEEEEccCCceEEEEEecCCCc
Confidence 99999999999999999999987 68899999875
No 2
>KOG0500|consensus
Probab=100.00 E-value=3.9e-42 Score=274.55 Aligned_cols=192 Identities=27% Similarity=0.518 Sum_probs=184.9
Q ss_pred ceehhhhhhhheeeeecCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q psy17883 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQMTSATAKYHDMLNNVREFMKLHEVP 81 (195)
Q Consensus 2 Y~~sly~~~~tl~t~gygdi~p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~ 81 (195)
|+.|+||++.|+||+| -.+.|.|+.|..|.++=.++|+++||-++|+++++++++++...+|+++++.++.||+.|++|
T Consensus 184 Y~~S~YWStLTlTTiG-e~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmna~r~EFq~~mDGiK~YM~~RkV~ 262 (536)
T KOG0500|consen 184 YLYSLYWSTLTLTTIG-EQPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMNAARTEFQAKMDGIKQYMRYRKVP 262 (536)
T ss_pred HHHHHHHHhhhhhhcc-CCCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 8899999999999999 467899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHhHHHhhCCHhHHHHHHHHHhHHHhhcCCccccCChHHHHHHhhhcccccccCCceeE
Q psy17883 82 KALSERVMDYVVSTWAMTKGLDTDKVLNYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLY 161 (195)
Q Consensus 82 ~~l~~rv~~y~~~~~~~~~~~~~~~il~~lp~~L~~~i~~~~~~~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~ 161 (195)
..++.||.+||.|.|.+++..|++++++.||+.|+.+|+..++.+.|+++++|+++.+.++.+|+..+++..|.|||+|+
T Consensus 263 ~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~iF~~ce~~lL~elVLklk~qvfSPgDyIC 342 (536)
T KOG0500|consen 263 KALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLKPQVFSPGDYIC 342 (536)
T ss_pred HHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhHHHhcchhHHHHHHHHhcceeeCCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCeEEEEEeeeEEEEeCCcE--EEEeeccc
Q psy17883 162 HTGESIDSLCFIVTGSLEVIQDDEV--VAILDLIW 194 (195)
Q Consensus 162 ~~g~~~~~~y~i~~G~v~v~~~~~~--~~~l~~~~ 194 (195)
++||.+.+||+|.+|.++|+.++++ ..++..|.
T Consensus 343 rKGdvgkEMyIVk~G~L~Vv~dDg~t~~~~L~~G~ 377 (536)
T KOG0500|consen 343 RKGDVGKEMYIVKEGKLAVVADDGVTVFVTLKAGS 377 (536)
T ss_pred ecCcccceEEEEEccEEEEEecCCcEEEEEecCCc
Confidence 9999999999999999999998874 55666664
No 3
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=9.2e-41 Score=294.78 Aligned_cols=193 Identities=24% Similarity=0.440 Sum_probs=182.3
Q ss_pred ceehhhhhhhheeeeecCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q psy17883 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQMTSATAKYHDMLNNVREFMKLHEVP 81 (195)
Q Consensus 2 Y~~sly~~~~tl~t~gygdi~p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~ 81 (195)
|+.|+||+++||||+||||++|.|..|+++++++|++|+.++||++++++.++...+.++.+|+++++.+++||+++++|
T Consensus 251 Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp 330 (823)
T PLN03192 251 YISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLP 330 (823)
T ss_pred HHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHhHHHhhCCHhHHHHHHHHHhHHHhhcCCccccCChHHHHHHhhhcccccccCCceeE
Q psy17883 82 KALSERVMDYVVSTWAMTKGLDTDKVLNYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLY 161 (195)
Q Consensus 82 ~~l~~rv~~y~~~~~~~~~~~~~~~il~~lp~~L~~~i~~~~~~~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~ 161 (195)
+.+++|+++|+++.|+.+ ..+++++++.||++||.++..+++.+.++++++|++++++++.+|+..++.+.|.|||.|+
T Consensus 331 ~~lq~ri~~y~~~~~~~~-~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~ 409 (823)
T PLN03192 331 PRLKDQILAYMCLRFKAE-SLNQQQLIDQLPKSICKSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVI 409 (823)
T ss_pred HHHHHHHHHHHHHHHhhc-cccHHHHHHHcCHHHHHHHHHHHHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEE
Confidence 999999999999999654 4688899999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCeEEEEEeeeEEEEeCC----cEEEEeecccC
Q psy17883 162 HTGESIDSLCFIVTGSLEVIQDD----EVVAILDLIWY 195 (195)
Q Consensus 162 ~~g~~~~~~y~i~~G~v~v~~~~----~~~~~l~~~~~ 195 (195)
.+||.++++|||.+|+|+++..+ ..++.++.|.+
T Consensus 410 ~qge~~~~lY~I~~G~V~i~~~~~~~e~~l~~l~~Gd~ 447 (823)
T PLN03192 410 MQNEAPDDVYIVVSGEVEIIDSEGEKERVVGTLGCGDI 447 (823)
T ss_pred ECCCCCceEEEEEecEEEEEEecCCcceeeEEccCCCE
Confidence 99999999999999999998632 24667777753
No 4
>KOG0499|consensus
Probab=100.00 E-value=2.5e-36 Score=245.66 Aligned_cols=192 Identities=19% Similarity=0.413 Sum_probs=184.6
Q ss_pred CceehhhhhhhheeeeecCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q psy17883 1 MYVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQMTSATAKYHDMLNNVREFMKLHEV 80 (195)
Q Consensus 1 ~Y~~sly~~~~tl~t~gygdi~p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l 80 (195)
.|++|+|||+.|++|+| |...|.|..|++|..+.-+.|+++|+.+||++-.++..+....+.|++.++..-.||++.++
T Consensus 403 ~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVFvFslliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i 481 (815)
T KOG0499|consen 403 EYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGVFVFSLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSI 481 (815)
T ss_pred ceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCC
Confidence 49999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCHhHHHhhCCHhHHHHHHHHHhHHHhhcCCccccCChHHHHHHhhhcccccccCCcee
Q psy17883 81 PKALSERVMDYVVSTWAMTKGLDTDKVLNYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLL 160 (195)
Q Consensus 81 ~~~l~~rv~~y~~~~~~~~~~~~~~~il~~lp~~L~~~i~~~~~~~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i 160 (195)
|...+.||+.+|+|.|++++-.|+.++++.||..|+-+++.+.+...+.++.+|++|+.+.+..++.+++.+.|.|||+|
T Consensus 482 ~kevqnRVr~WyeyTW~sQr~LDEs~ll~~LP~klq~dlAi~V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfV 561 (815)
T KOG0499|consen 482 PKEVQNRVRTWYEYTWDSQRMLDESDLLKTLPTKLQLDLAIDVNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFV 561 (815)
T ss_pred cHHHHHHHHHHHHhhhhhhccccHHHHHHhcchhheeeeeEEeehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCeEEEEEeeeEEEEe---CCcEEEEeecc
Q psy17883 161 YHTGESIDSLCFIVTGSLEVIQ---DDEVVAILDLI 193 (195)
Q Consensus 161 ~~~g~~~~~~y~i~~G~v~v~~---~~~~~~~l~~~ 193 (195)
+++||.|.+||+|..|.|+|+. .+.+.++|..|
T Consensus 562 CkKGeiGkEMYIIk~GqvQVlGGp~~~~Vl~tL~~G 597 (815)
T KOG0499|consen 562 CKKGEIGKEMYIIKHGQVQVLGGPDGTKVLVTLKAG 597 (815)
T ss_pred eecccccceeEEeecceEEEecCCCCCEEEEEeccc
Confidence 9999999999999999999986 23456666665
No 5
>KOG0501|consensus
Probab=100.00 E-value=1.3e-35 Score=241.51 Aligned_cols=194 Identities=82% Similarity=1.306 Sum_probs=192.0
Q ss_pred CceehhhhhhhheeeeecCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q psy17883 1 MYVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQMTSATAKYHDMLNNVREFMKLHEV 80 (195)
Q Consensus 1 ~Y~~sly~~~~tl~t~gygdi~p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l 80 (195)
+|+.|+||++++|||+|||++.|.|..|++|+++.|++|.++||-++|+++.+++++.+....|++.+.++.+||+-.++
T Consensus 423 ~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM~s~T~rYHeMlnnVReFlKL~ev 502 (971)
T KOG0501|consen 423 AYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQMTSNTNRYHEMLNNVREFLKLYEV 502 (971)
T ss_pred eehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCHhHHHhhCCHhHHHHHHHHHhHHHhhcCCccccCChHHHHHHhhhcccccccCCcee
Q psy17883 81 PKALSERVMDYVVSTWAMTKGLDTDKVLNYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLL 160 (195)
Q Consensus 81 ~~~l~~rv~~y~~~~~~~~~~~~~~~il~~lp~~L~~~i~~~~~~~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i 160 (195)
|+.|.+||..|.-..|...+|.|-++++.-.|+.+|.+|..++.++.++..|.|+-.++.++++|+..++..+..|||.+
T Consensus 503 PK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkADICVHLNRKVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLl 582 (971)
T KOG0501|consen 503 PKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLL 582 (971)
T ss_pred cHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCccccccceeeecchhhhccCcceeeccchhHHHHHHHHHhccCCCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 161 YHTGESIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 161 ~~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
+..||..|.++|+.+|..+|++++++++++++|+
T Consensus 583 YHtGESvDaLcFvVsGSLEVIQDDEVVAILGKGD 616 (971)
T KOG0501|consen 583 YHTGESVDALCFVVSGSLEVIQDDEVVAILGKGD 616 (971)
T ss_pred eecCCccceEEEEEecceEEeecCcEEEEeecCc
Confidence 9999999999999999999999999999999985
No 6
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.29 E-value=3.4e-12 Score=81.36 Aligned_cols=54 Identities=31% Similarity=0.749 Sum_probs=48.4
Q ss_pred ceehhhhhhhheeeeecCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17883 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQ 55 (195)
Q Consensus 2 Y~~sly~~~~tl~t~gygdi~p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~ 55 (195)
|..|+||++.+++|+||||+.|.++.+++++++.+++|+.+++..++.+++.+.
T Consensus 25 ~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 25 FIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp HHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 678999999999999999999999999999999999999999999999988775
No 7
>KOG3713|consensus
Probab=99.13 E-value=8.1e-11 Score=95.97 Aligned_cols=64 Identities=16% Similarity=0.248 Sum_probs=54.5
Q ss_pred ehhhhhhhheeeeecCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17883 4 TALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQMTSATAKYHDM 67 (195)
Q Consensus 4 ~sly~~~~tl~t~gygdi~p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~ 67 (195)
.|+|||+.||||+||||.+|.|..+++++..+++.|+++.|..|..+..=+..........++.
T Consensus 380 a~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~~k~~~~~ 443 (477)
T KOG3713|consen 380 AGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYSELKAREKA 443 (477)
T ss_pred chhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHHHHHHHHh
Confidence 4799999999999999999999999999999999999999999988877776655444444333
No 8
>KOG1113|consensus
Probab=98.94 E-value=3e-09 Score=83.55 Aligned_cols=72 Identities=15% Similarity=0.168 Sum_probs=68.0
Q ss_pred hHHHhhcCCccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEeCCcEEEEeecccC
Q psy17883 124 NRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILDLIWY 195 (195)
Q Consensus 124 ~~~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~~ 195 (195)
..+.+++.-+|++++++.++++...|+...+..|+.|+++||.+|.||+|.+|+++|+..+.-+..++.|++
T Consensus 120 L~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~~~~v~~~~~g~s 191 (368)
T KOG1113|consen 120 LEEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVNGTYVTTYSPGGS 191 (368)
T ss_pred HHHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEECCeEEeeeCCCCc
Confidence 447889999999999999999999999999999999999999999999999999999999999999988864
No 9
>KOG0614|consensus
Probab=98.90 E-value=1.9e-09 Score=88.82 Aligned_cols=74 Identities=22% Similarity=0.282 Sum_probs=66.0
Q ss_pred HHhHHHhhcCCccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEeCCc------EEEEeecccC
Q psy17883 122 HLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDE------VVAILDLIWY 195 (195)
Q Consensus 122 ~~~~~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~------~~~~l~~~~~ 195 (195)
+.+..+|+++|+|+++|++.+..++..|+...|..|++|+++|+.++.+|+|.+|+|.|.+.++ .++.+..|.|
T Consensus 268 ~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~ 347 (732)
T KOG0614|consen 268 EQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDY 347 (732)
T ss_pred HHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccch
Confidence 3466899999999999999999999999999999999999999999999999999999987543 3667777744
No 10
>KOG1419|consensus
Probab=98.90 E-value=2.8e-09 Score=87.99 Aligned_cols=86 Identities=16% Similarity=0.355 Sum_probs=69.9
Q ss_pred ceehhhhhhhheeeeecCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q psy17883 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQMTSATAKYHDMLNNVREFMKLHEVP 81 (195)
Q Consensus 2 Y~~sly~~~~tl~t~gygdi~p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~ 81 (195)
|..|+||.+.|++|+||||.+|.|..+++++.++.++|+.+||..-|.+.+=++-..+. +.++ ++|=|+++..
T Consensus 270 yADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKVQe--q~RQ-----KHf~rrr~pA 342 (654)
T KOG1419|consen 270 YADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKVQE--QHRQ-----KHFNRRRNPA 342 (654)
T ss_pred HHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhhHH--HHHH-----HHHHhhcchH
Confidence 78899999999999999999999999999999999999999999999998888754422 1111 3455677777
Q ss_pred HHHHHHHHHHHHH
Q psy17883 82 KALSERVMDYVVS 94 (195)
Q Consensus 82 ~~l~~rv~~y~~~ 94 (195)
..|....=+||..
T Consensus 343 A~LIQc~WR~yaa 355 (654)
T KOG1419|consen 343 ASLIQCAWRYYAA 355 (654)
T ss_pred HHHHHHHHHHHhc
Confidence 7777777666653
No 11
>KOG0614|consensus
Probab=98.73 E-value=1.8e-08 Score=83.16 Aligned_cols=82 Identities=15% Similarity=0.176 Sum_probs=73.5
Q ss_pred CHhHHHHHHHHHhHHHhhcCCccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEeCCcEEEEee
Q psy17883 112 PKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILD 191 (195)
Q Consensus 112 p~~L~~~i~~~~~~~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~ 191 (195)
|..-|..-..++..+++++..|++++++..+.+++..|.+..|.+|..|+++||+++++|++..|+++|++++..++.++
T Consensus 140 ~~~~Kd~~~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~~g~ll~~m~ 219 (732)
T KOG0614|consen 140 PRYNKDVGAKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSREGKLLGKMG 219 (732)
T ss_pred ccccCCccHHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEeeCCeeeeccC
Confidence 33333344467888999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred cc
Q psy17883 192 LI 193 (195)
Q Consensus 192 ~~ 193 (195)
.|
T Consensus 220 ~g 221 (732)
T KOG0614|consen 220 AG 221 (732)
T ss_pred Cc
Confidence 76
No 12
>PLN02868 acyl-CoA thioesterase family protein
Probab=98.73 E-value=5.2e-08 Score=80.78 Aligned_cols=70 Identities=20% Similarity=0.229 Sum_probs=61.1
Q ss_pred HHHhhcCCccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEeCC----cEEEEeeccc
Q psy17883 125 RKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDD----EVVAILDLIW 194 (195)
Q Consensus 125 ~~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~----~~~~~l~~~~ 194 (195)
.+.++++++|++++++.+++++..++...|.+|++|+++||..+.+|+|.+|+|++...+ ..+..++.|.
T Consensus 7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd 80 (413)
T PLN02868 7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESRPEFLLKRYD 80 (413)
T ss_pred HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcEEEEEeCCCC
Confidence 466889999999999999999999999999999999999999999999999999997632 2345556664
No 13
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=98.69 E-value=7.1e-08 Score=64.88 Aligned_cols=51 Identities=24% Similarity=0.357 Sum_probs=48.5
Q ss_pred ccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEeC
Q psy17883 133 AFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQD 183 (195)
Q Consensus 133 ~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~ 183 (195)
+|.++++..+++++..++...+.+|++|+++|+..+.+|+|.+|.+++...
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~ 51 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKV 51 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEE
Confidence 578999999999999999999999999999999999999999999999863
No 14
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.69 E-value=4.5e-08 Score=80.26 Aligned_cols=53 Identities=26% Similarity=0.638 Sum_probs=48.6
Q ss_pred ceehhhhhhhheeeeecCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17883 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTII 54 (195)
Q Consensus 2 Y~~sly~~~~tl~t~gygdi~p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~ 54 (195)
+..|+||++.|++|+||||+.|.|..+++++++++++|+.++++.++.+...+
T Consensus 169 ~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 169 LSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred HHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999999999999999999999999999998876644
No 15
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=98.65 E-value=1.3e-07 Score=63.31 Aligned_cols=52 Identities=29% Similarity=0.425 Sum_probs=48.9
Q ss_pred ccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEeCC
Q psy17883 133 AFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDD 184 (195)
Q Consensus 133 ~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~ 184 (195)
+|+.++++.++.++..++.+.+.+|++|+.+|+..+.+|+|.+|.+.+...+
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~ 52 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLD 52 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEEC
Confidence 5788999999999999999999999999999999999999999999998644
No 16
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=98.62 E-value=1.4e-07 Score=72.24 Aligned_cols=58 Identities=22% Similarity=0.329 Sum_probs=55.5
Q ss_pred HHHhhcCCccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEe
Q psy17883 125 RKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQ 182 (195)
Q Consensus 125 ~~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~ 182 (195)
.+.++.+++|++++++.++.+....+...|.+|+.|+++||..+.+|+|.+|.|+++.
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~ 63 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSA 63 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEE
Confidence 4688899999999999999999999999999999999999999999999999999975
No 17
>KOG3684|consensus
Probab=98.62 E-value=1e-07 Score=77.28 Aligned_cols=88 Identities=15% Similarity=0.309 Sum_probs=72.6
Q ss_pred ceehhhhhhhheeeeecCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q psy17883 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQMTSATAKYHDMLNNVREFMKLHEVP 81 (195)
Q Consensus 2 Y~~sly~~~~tl~t~gygdi~p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~ 81 (195)
|..|+|....|+.++||||++|.|..++..+++.-++|+++.|.+++.++.-+ +..+.-+++++||-+.++-
T Consensus 288 ~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKL--------eLt~aEKhVhNFMmDtqLT 359 (489)
T KOG3684|consen 288 YLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKL--------ELTKAEKHVHNFMMDTQLT 359 (489)
T ss_pred HHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999999999999999999999999999999998776544 3444556778888888777
Q ss_pred HHHHHHHHHHHHHHHH
Q psy17883 82 KALSERVMDYVVSTWA 97 (195)
Q Consensus 82 ~~l~~rv~~y~~~~~~ 97 (195)
.+.++-..+-++..|.
T Consensus 360 k~~KnAAA~VLqeTW~ 375 (489)
T KOG3684|consen 360 KEHKNAAANVLQETWL 375 (489)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777776666665554
No 18
>KOG1418|consensus
Probab=98.55 E-value=1.4e-07 Score=77.90 Aligned_cols=58 Identities=28% Similarity=0.583 Sum_probs=54.0
Q ss_pred ceehhhhhhhheeeeecCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17883 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQMTS 59 (195)
Q Consensus 2 Y~~sly~~~~tl~t~gygdi~p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~~~~ 59 (195)
+..|+|++.+++||+|||++.|.|..++++++++.++|+-++..+++.+...+.....
T Consensus 116 f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~ 173 (433)
T KOG1418|consen 116 FSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLR 173 (433)
T ss_pred cchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999999999999999999999886443
No 19
>KOG1420|consensus
Probab=98.45 E-value=7.5e-08 Score=80.32 Aligned_cols=126 Identities=20% Similarity=0.344 Sum_probs=88.8
Q ss_pred ceehhhhhhhheeeeecCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-
Q psy17883 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQMTSATAKYHDMLNNVREFMKLHEV- 80 (195)
Q Consensus 2 Y~~sly~~~~tl~t~gygdi~p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l- 80 (195)
|..|.|+.+.||+|+||||++..|..++.|.+++++.|...||-.+..+..++.+.+.-.-+|...-. +++-+
T Consensus 289 yw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~kyggeyk~ehg------kkhivv 362 (1103)
T KOG1420|consen 289 YWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEYKAEHG------KKHIVV 362 (1103)
T ss_pred hhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCceeehhcC------CeeEEE
Confidence 78899999999999999999999999999999999999999999999999999875544333322100 01100
Q ss_pred -CHHHHHHHHHHHHHHHHhcC-CCCH-hHHHhhCCHhHHHHHHHHHhHHHhhcCCcccc
Q psy17883 81 -PKALSERVMDYVVSTWAMTK-GLDT-DKVLNYCPKDMKADICVHLNRKVFNEHPAFRL 136 (195)
Q Consensus 81 -~~~l~~rv~~y~~~~~~~~~-~~~~-~~il~~lp~~L~~~i~~~~~~~~l~~~~~f~~ 136 (195)
.....+.+..|++-.-.+++ ..+. --++...||.|.-+ -++++.+.++.+|++
T Consensus 363 cghityesvshflkdflhedrddvdvevvflhr~~pdlele---glfkrhft~veffqg 418 (1103)
T KOG1420|consen 363 CGHITYESVSHFLKDFLHEDRDDVDVEVVFLHRISPDLELE---GLFKRHFTQVEFFQG 418 (1103)
T ss_pred ecceeHHHHHHHHHHHhhccccccceEEEEEecCCCCcchH---HHHhhheeeEEEecc
Confidence 12223444555554333332 2332 34678889988776 566677888888875
No 20
>KOG1545|consensus
Probab=98.41 E-value=6.9e-09 Score=81.81 Aligned_cols=53 Identities=23% Similarity=0.311 Sum_probs=47.2
Q ss_pred ehhhhhhhheeeeecCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17883 4 TALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQ 56 (195)
Q Consensus 4 ~sly~~~~tl~t~gygdi~p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~ 56 (195)
.|||||+.||||+||||..|.|..++++..++.+.|++..|..+..+.+=+..
T Consensus 396 daFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIVsNFny 448 (507)
T KOG1545|consen 396 DAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIVSNFNY 448 (507)
T ss_pred ccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEEecccc
Confidence 48999999999999999999999999999999999999999877666554443
No 21
>KOG1113|consensus
Probab=98.33 E-value=5.5e-07 Score=71.00 Aligned_cols=75 Identities=13% Similarity=0.141 Sum_probs=65.2
Q ss_pred HHHhHHHhhcCCccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEeCC-cEEEEeecccC
Q psy17883 121 VHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDD-EVVAILDLIWY 195 (195)
Q Consensus 121 ~~~~~~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~-~~~~~l~~~~~ 195 (195)
..++.+.|+++|+++.+.......++..+.+..|.+|+.|+.+|+.++.+|+|.+|+|.+.... +++..++.|.|
T Consensus 235 rkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~v~vkl~~~dy 310 (368)
T KOG1113|consen 235 RKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDGVEVKLKKGDY 310 (368)
T ss_pred hhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhccCCeEEEechhhh
Confidence 4678899999999999999999999999999999999999999999999999999999997533 33336665544
No 22
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=98.30 E-value=2.3e-06 Score=71.54 Aligned_cols=69 Identities=20% Similarity=0.291 Sum_probs=62.9
Q ss_pred HHHhhcCCccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEeCCcE-EEEeecc
Q psy17883 125 RKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEV-VAILDLI 193 (195)
Q Consensus 125 ~~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~-~~~l~~~ 193 (195)
.+++.+.|.|..++++.+.+|...++..+|.+||+|+..|.+...+|+|.+|.|++..+++. ...+..|
T Consensus 6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~~g~v~~~~~~g 75 (610)
T COG2905 6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSDGGEVLDRLAAG 75 (610)
T ss_pred HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcCCCeeeeeeccC
Confidence 47889999999999999999999999999999999999999999999999999999887765 5566555
No 23
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=98.19 E-value=5.5e-06 Score=62.21 Aligned_cols=48 Identities=27% Similarity=0.443 Sum_probs=45.7
Q ss_pred ccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEe
Q psy17883 135 RLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQ 182 (195)
Q Consensus 135 ~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~ 182 (195)
+.++++.+++++..++...|.+|++|+.+||+.+.+|+|.+|.++++.
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~ 53 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLI 53 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEE
Confidence 568999999999999999999999999999999999999999999984
No 24
>KOG4390|consensus
Probab=98.17 E-value=1.3e-07 Score=75.48 Aligned_cols=52 Identities=23% Similarity=0.397 Sum_probs=45.4
Q ss_pred ehhhhhhhheeeeecCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17883 4 TALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQ 55 (195)
Q Consensus 4 ~sly~~~~tl~t~gygdi~p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~ 55 (195)
.|||+++.||||.||||.+|.|..++++..++.+.|+++.|..+..+.+=++
T Consensus 359 aaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFS 410 (632)
T KOG4390|consen 359 AAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFS 410 (632)
T ss_pred HhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechh
Confidence 4799999999999999999999999999999999999999986655444443
No 25
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=98.06 E-value=1.6e-05 Score=59.33 Aligned_cols=66 Identities=24% Similarity=0.440 Sum_probs=54.8
Q ss_pred hcCCccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEeCC--c---EEEEeeccc
Q psy17883 129 NEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDD--E---VVAILDLIW 194 (195)
Q Consensus 129 ~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~--~---~~~~l~~~~ 194 (195)
.+.+.|...+......+....+...+.+|+.|+++||+++.+|+|.+|.++++... + .+..+..|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~ 73 (214)
T COG0664 3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGD 73 (214)
T ss_pred ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCc
Confidence 45677777888888888899999999999999999999999999999999998643 2 344565664
No 26
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=98.06 E-value=1.2e-05 Score=61.42 Aligned_cols=55 Identities=16% Similarity=0.199 Sum_probs=48.3
Q ss_pred hhcCCccccCChHHHHHHhhhccc-ccccCCceeEecCCCCCeEEEEEeeeEEEEe
Q psy17883 128 FNEHPAFRLASDGCLRALAMHFTM-SHSAPGDLLYHTGESIDSLCFIVTGSLEVIQ 182 (195)
Q Consensus 128 l~~~~~f~~~~~~~l~~l~~~l~~-~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~ 182 (195)
+++.+.|.+++++.++.|....+. ..|.+|+.|+++||..+.+|+|.+|.|+++.
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~ 70 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYT 70 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEE
Confidence 455555557999999999988865 6799999999999999999999999999986
No 27
>KOG4404|consensus
Probab=97.96 E-value=1.1e-05 Score=63.03 Aligned_cols=51 Identities=25% Similarity=0.562 Sum_probs=44.3
Q ss_pred ceehhhhhhhheeeeecCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17883 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTT 52 (195)
Q Consensus 2 Y~~sly~~~~tl~t~gygdi~p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~ 52 (195)
+.-||||+++.+||+|||...|.|..+++|+|+..++|+-+....+..+..
T Consensus 81 F~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gE 131 (350)
T KOG4404|consen 81 FAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGE 131 (350)
T ss_pred cCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHH
Confidence 346899999999999999999999999999999999998877776644443
No 28
>KOG4404|consensus
Probab=97.95 E-value=1.7e-05 Score=62.05 Aligned_cols=59 Identities=15% Similarity=0.395 Sum_probs=47.8
Q ss_pred CceehhhhhhhheeeeecCCcccCCc--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17883 1 MYVTALYFTMTCMTSVGFGNVAAETD--------NEKIFTICMMIIAALLYATIFGHVTTIIQQMTS 59 (195)
Q Consensus 1 ~Y~~sly~~~~tl~t~gygdi~p~t~--------~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~~~~ 59 (195)
.|+.|+|+.+.|+||+||||.++... .-..++++++++|+++++..+..+...+..++.
T Consensus 186 syfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~~~ 252 (350)
T KOG4404|consen 186 SYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTMNA 252 (350)
T ss_pred chhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 48999999999999999999876554 334788999999999998888777666665554
No 29
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=97.82 E-value=4.3e-05 Score=48.97 Aligned_cols=32 Identities=22% Similarity=0.529 Sum_probs=29.9
Q ss_pred ccccCCceeEecCCCCCeEEEEEeeeEEEEeC
Q psy17883 152 SHSAPGDLLYHTGESIDSLCFIVTGSLEVIQD 183 (195)
Q Consensus 152 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~ 183 (195)
+.|.+|+.|+++|+..+++|||.+|.+++...
T Consensus 2 ~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~ 33 (91)
T PF00027_consen 2 KTYKKGEVIYRQGDPCDHIYIILSGEVKVSSI 33 (91)
T ss_dssp EEESTTEEEEETTSBESEEEEEEESEEEEEEE
T ss_pred eEECCCCEEEeCCCcCCEEEEEEECceEEEec
Confidence 57899999999999999999999999999863
No 30
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=97.71 E-value=5.5e-05 Score=57.62 Aligned_cols=42 Identities=10% Similarity=0.188 Sum_probs=38.0
Q ss_pred HHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEe
Q psy17883 141 CLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQ 182 (195)
Q Consensus 141 ~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~ 182 (195)
|..+++...+...|.+|+.|+.+||+.+.+|+|.+|.|.++.
T Consensus 23 ~~~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~ 64 (226)
T PRK10402 23 FSFDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYA 64 (226)
T ss_pred CCHHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEE
Confidence 344678889999999999999999999999999999999975
No 31
>KOG1418|consensus
Probab=97.32 E-value=0.00023 Score=58.76 Aligned_cols=46 Identities=22% Similarity=0.526 Sum_probs=41.0
Q ss_pred ceehhhhhhhheeeeecCCcccCCchhH--------HHHHHHHHHHHHHHHHHH
Q psy17883 2 YVTALYFTMTCMTSVGFGNVAAETDNEK--------IFTICMMIIAALLYATIF 47 (195)
Q Consensus 2 Y~~sly~~~~tl~t~gygdi~p~t~~e~--------~~~i~~~~~g~~~~a~~i 47 (195)
|+.|+|+++.++||+|+||+.|.+...+ ....++.++|....+.+.
T Consensus 243 f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 243 FIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 7899999999999999999999998866 578888888888888777
No 32
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=97.21 E-value=0.00062 Score=52.01 Aligned_cols=39 Identities=15% Similarity=0.266 Sum_probs=35.8
Q ss_pred HHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEe
Q psy17883 144 ALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQ 182 (195)
Q Consensus 144 ~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~ 182 (195)
.+....+...|.+|++|+.+||..+.+|+|.+|.|+++.
T Consensus 33 ~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~ 71 (230)
T PRK09391 33 HAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYR 71 (230)
T ss_pred cccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEE
Confidence 456778899999999999999999999999999999975
No 33
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.03 E-value=0.00056 Score=55.11 Aligned_cols=55 Identities=20% Similarity=0.367 Sum_probs=43.2
Q ss_pred ceehhhhhhhheeeeecCC--cccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17883 2 YVTALYFTMTCMTSVGFGN--VAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQ 56 (195)
Q Consensus 2 Y~~sly~~~~tl~t~gygd--i~p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~ 56 (195)
+..+|++++.|++|+|||. +.|..+...++.++=+++|.++.|.++|.+..=+++
T Consensus 85 f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~sr 141 (336)
T PF01007_consen 85 FTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSR 141 (336)
T ss_dssp HHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred hhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4578999999999999998 567777777888888999999999999888766654
No 34
>KOG3542|consensus
Probab=96.79 E-value=0.0026 Score=54.84 Aligned_cols=74 Identities=22% Similarity=0.333 Sum_probs=65.5
Q ss_pred HHHhHHHhhcCCccccCChHHHHHHhhhcccccc-cCCceeEecCCCCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 121 VHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHS-APGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 121 ~~~~~~~l~~~~~f~~~~~~~l~~l~~~l~~~~~-~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
.+...+++.+.|.|.+++....++||..|-.... .+|.+|...|+.-|+-++|+.|.|+|+.+++....+.+|+
T Consensus 276 ieqLLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~PdGk~e~l~mGn 350 (1283)
T KOG3542|consen 276 IEQLLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPDGKREELKMGN 350 (1283)
T ss_pred HHHHHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecCCCceEEeeccc
Confidence 3455688999999999999999999999887766 6888899999999999999999999999999888887774
No 35
>KOG3193|consensus
Probab=95.12 E-value=0.019 Score=48.69 Aligned_cols=43 Identities=21% Similarity=0.444 Sum_probs=31.4
Q ss_pred eehhhhhhhheeeeecCCcccCCchhHHHHHHHHHHHHHHHHH
Q psy17883 3 VTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYAT 45 (195)
Q Consensus 3 ~~sly~~~~tl~t~gygdi~p~t~~e~~~~i~~~~~g~~~~a~ 45 (195)
+.|+|+++.|++|+||||.+|.-....+..++.+-+...+..-
T Consensus 219 f~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip~ 261 (1087)
T KOG3193|consen 219 FTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIPK 261 (1087)
T ss_pred eeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhccHH
Confidence 4689999999999999999998876666555544444333333
No 36
>KOG3542|consensus
Probab=94.48 E-value=0.034 Score=48.29 Aligned_cols=71 Identities=17% Similarity=0.206 Sum_probs=58.4
Q ss_pred CHhHHHHHHHHHhHHHhhcCCccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEe
Q psy17883 112 PKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQ 182 (195)
Q Consensus 112 p~~L~~~i~~~~~~~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~ 182 (195)
|+.++.......-.+.|+....|.++-..-+..++...+.+.+..+.++++.|+.+++-|++++|.|-|..
T Consensus 23 ~~~~~t~~~~rN~~~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~g 93 (1283)
T KOG3542|consen 23 PPHLRTPDDIRNVYEQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVEG 93 (1283)
T ss_pred CcccCChhhhhhHHHHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEeec
Confidence 44444443333333577788899999999999999999999999999999999999999999999998864
No 37
>KOG2968|consensus
Probab=94.43 E-value=0.017 Score=51.52 Aligned_cols=44 Identities=30% Similarity=0.539 Sum_probs=39.2
Q ss_pred hHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEe
Q psy17883 139 DGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQ 182 (195)
Q Consensus 139 ~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~ 182 (195)
.+++..+=..+.+....||+.+++|||..|++|+++.|++.-+.
T Consensus 498 sp~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~ 541 (1158)
T KOG2968|consen 498 SPFLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVI 541 (1158)
T ss_pred CHHHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhh
Confidence 35677777888999999999999999999999999999998764
No 38
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=94.38 E-value=0.45 Score=34.92 Aligned_cols=58 Identities=17% Similarity=0.497 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHh--cCCCCHhHHHhhC--CHhHHHHHHHHHh
Q psy17883 65 HDMLNNVREFMKLHEVPKALSERVMDYVVSTWAM--TKGLDTDKVLNYC--PKDMKADICVHLN 124 (195)
Q Consensus 65 ~~~~~~l~~~l~~~~l~~~l~~rv~~y~~~~~~~--~~~~~~~~il~~l--p~~L~~~i~~~~~ 124 (195)
++-+++++.+++ ++|++-++++.+||+-.... .+|.+++++.++| |+++-+++..+..
T Consensus 4 ~efL~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~~ 65 (181)
T PF08006_consen 4 NEFLNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEYS 65 (181)
T ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhhh
Confidence 345677888886 59999999999999988875 4567899999997 7777777775543
No 39
>COG4709 Predicted membrane protein [Function unknown]
Probab=93.33 E-value=0.78 Score=33.69 Aligned_cols=78 Identities=14% Similarity=0.283 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhc--CCCCHhHHHhhC--CHhHHHHHHHHHhHHHhhcCCccccCChHH
Q psy17883 66 DMLNNVREFMKLHEVPKALSERVMDYVVSTWAMT--KGLDTDKVLNYC--PKDMKADICVHLNRKVFNEHPAFRLASDGC 141 (195)
Q Consensus 66 ~~~~~l~~~l~~~~l~~~l~~rv~~y~~~~~~~~--~~~~~~~il~~l--p~~L~~~i~~~~~~~~l~~~~~f~~~~~~~ 141 (195)
+-+++++.|++ ++|++.++.+..+|+..+.+. .+.+|+++..+| |.++-.|+..+.-.+-.+.-|-+++.+...
T Consensus 5 efL~eL~~yL~--~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~ai 82 (195)
T COG4709 5 EFLNELEQYLE--GLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRRAI 82 (195)
T ss_pred HHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHHHH
Confidence 34566777754 699999999999999877644 567899999998 777777777666666666667777666654
Q ss_pred HHHH
Q psy17883 142 LRAL 145 (195)
Q Consensus 142 l~~l 145 (195)
+..+
T Consensus 83 i~~~ 86 (195)
T COG4709 83 IALI 86 (195)
T ss_pred HHHH
Confidence 4433
No 40
>KOG2968|consensus
Probab=92.81 E-value=0.3 Score=44.02 Aligned_cols=52 Identities=23% Similarity=0.368 Sum_probs=42.5
Q ss_pred HHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEeCCc-----EEEEeecc
Q psy17883 142 LRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDE-----VVAILDLI 193 (195)
Q Consensus 142 l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~-----~~~~l~~~ 193 (195)
..+++++++...+..||+|++-|+++|.+|.+.+|..+|+-+++ .+.++..|
T Consensus 108 fl~L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~llk~V~~G 164 (1158)
T KOG2968|consen 108 FLELDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEYLLKTVPPG 164 (1158)
T ss_pred eeeechhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCceeeEeeccCC
Confidence 34456999999999999999999999999999999999986433 35555555
No 41
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=92.09 E-value=0.56 Score=29.02 Aligned_cols=38 Identities=16% Similarity=0.368 Sum_probs=28.9
Q ss_pred cCCceeEecCCCCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 155 APGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 155 ~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
.||..-..-.. +++.+|++|+|.+..+++....++.|+
T Consensus 15 ~pg~~~~~~~~--~E~~~vleG~v~it~~~G~~~~~~aGD 52 (74)
T PF05899_consen 15 TPGKFPWPYPE--DEFFYVLEGEVTITDEDGETVTFKAGD 52 (74)
T ss_dssp ECEEEEEEESS--EEEEEEEEEEEEEEETTTEEEEEETTE
T ss_pred CCceeEeeCCC--CEEEEEEEeEEEEEECCCCEEEEcCCc
Confidence 45554443332 899999999999999988888888875
No 42
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=92.00 E-value=0.095 Score=36.71 Aligned_cols=69 Identities=10% Similarity=0.289 Sum_probs=47.0
Q ss_pred ehhhhhhhheeeeecCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy17883 4 TALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQMTSATAKYHDMLNNVREFMKLH 78 (195)
Q Consensus 4 ~sly~~~~tl~t~gygdi~p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 78 (195)
.++++++.+++.-| ++..|.+...|++.+++.+++.++.+...+.+++.+.... +...++.+++..+..
T Consensus 47 ~~~~~~~~~~~~q~-~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~-----~~~~i~sl~dL~~~~ 115 (148)
T PF00060_consen 47 NSFWYTFGTLLQQG-SSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVPK-----YEPPIDSLEDLANSG 115 (148)
T ss_dssp HHHHHCCCCCHHHH-H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----HTSS-SSHHHHHTHS
T ss_pred HHHHHHHHhhcccc-ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-----cCCCCCCHHHHHHCC
Confidence 46777777776634 6788999999999999999999999999999999887632 333355555655554
No 43
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=91.85 E-value=0.37 Score=29.00 Aligned_cols=41 Identities=15% Similarity=0.179 Sum_probs=29.6
Q ss_pred ccccCCceeEecCCCCC-eEEEEEeeeEEEEeCCcEEEEeecc
Q psy17883 152 SHSAPGDLLYHTGESID-SLCFIVTGSLEVIQDDEVVAILDLI 193 (195)
Q Consensus 152 ~~~~~g~~i~~~g~~~~-~~y~i~~G~v~v~~~~~~~~~l~~~ 193 (195)
..+.||+..=..-.... +++++++|++++..+++ ...+..|
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~~~-~~~l~~G 44 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTVDGE-RVELKPG 44 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEEETTE-EEEEETT
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEEEccE-EeEccCC
Confidence 45778887665555666 99999999999995544 5555554
No 44
>KOG3827|consensus
Probab=91.80 E-value=0.31 Score=39.64 Aligned_cols=55 Identities=16% Similarity=0.379 Sum_probs=42.7
Q ss_pred ceehhhhhhhheeeeecCCcccCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17883 2 YVTALYFTMTCMTSVGFGNVAAET--DNEKIFTICMMIIAALLYATIFGHVTTIIQQ 56 (195)
Q Consensus 2 Y~~sly~~~~tl~t~gygdi~p~t--~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~ 56 (195)
+..||.|++.|=+|+|||--.+.. +...+..++=+++|+++-++++|.+..-+++
T Consensus 113 f~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiar 169 (400)
T KOG3827|consen 113 FTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIAR 169 (400)
T ss_pred hhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456889999999999999865444 4555666666789999999999888665554
No 45
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=83.44 E-value=16 Score=27.28 Aligned_cols=59 Identities=10% Similarity=0.192 Sum_probs=44.0
Q ss_pred hhCCHhHHHHHHHHHhHHHhhcCCccc-cCChHHHHHHhhhccccc--ccCCceeEecCCCCC
Q psy17883 109 NYCPKDMKADICVHLNRKVFNEHPAFR-LASDGCLRALAMHFTMSH--SAPGDLLYHTGESID 168 (195)
Q Consensus 109 ~~lp~~L~~~i~~~~~~~~l~~~~~f~-~~~~~~l~~l~~~l~~~~--~~~g~~i~~~g~~~~ 168 (195)
..+|++ ...+...+...++.-.-+|. ...+...++......+.. +.+||.|+++|+..+
T Consensus 146 ~~~~~~-~~~~~~~l~~~~i~PNl~~d~~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 146 SNLPSE-LRELLKELLSNFIRPNLIYDEEATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred cCCCHH-HHHHHHHHHHhcCCchhhcCHHHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 445666 44555566656666555664 567778888899999999 999999999999865
No 46
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=83.25 E-value=3.3 Score=27.64 Aligned_cols=44 Identities=14% Similarity=0.314 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHHHHHhc----------CCCCHhHHHhhCCHhHHHHHHHH
Q psy17883 79 EVPKALSERVMDYVVSTWAMT----------KGLDTDKVLNYCPKDMKADICVH 122 (195)
Q Consensus 79 ~l~~~l~~rv~~y~~~~~~~~----------~~~~~~~il~~lp~~L~~~i~~~ 122 (195)
.+|+.++..|...+...-... ...+.-.++..||++||.+|...
T Consensus 52 ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 52 ALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred hCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 579999999988887543322 12345579999999999998764
No 47
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=82.24 E-value=7.8 Score=22.65 Aligned_cols=27 Identities=11% Similarity=0.305 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHh
Q psy17883 50 VTTIIQQMTSATA---KYHDMLNNVREFMK 76 (195)
Q Consensus 50 i~~~~~~~~~~~~---~~~~~~~~l~~~l~ 76 (195)
+-.++.+.+...+ ..+++++++-+.+.
T Consensus 27 IRri~~~s~~kkq~~~~~eqKLDrIIeLLE 56 (58)
T PF13314_consen 27 IRRILINSNAKKQDVDSMEQKLDRIIELLE 56 (58)
T ss_pred HHHHHHhccccccchhHHHHHHHHHHHHHc
Confidence 4445554333322 47788888877654
No 48
>KOG0498|consensus
Probab=80.99 E-value=18 Score=32.58 Aligned_cols=46 Identities=15% Similarity=0.166 Sum_probs=36.2
Q ss_pred hhCCHhHHHHHHHHHhHHHhh-----cCCccccCChHHHHHHhhhcccccc
Q psy17883 109 NYCPKDMKADICVHLNRKVFN-----EHPAFRLASDGCLRALAMHFTMSHS 154 (195)
Q Consensus 109 ~~lp~~L~~~i~~~~~~~~l~-----~~~~f~~~~~~~l~~l~~~l~~~~~ 154 (195)
+.||+.||+.+..+...++.. ...+++++|++..+.++.++-....
T Consensus 371 ~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv 421 (727)
T KOG0498|consen 371 RQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDLV 421 (727)
T ss_pred ccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHHH
Confidence 469999999999877666554 4578899999999999888854433
No 49
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=78.79 E-value=6.9 Score=26.57 Aligned_cols=38 Identities=26% Similarity=0.372 Sum_probs=30.2
Q ss_pred cCCceeEecCCCCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 155 APGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 155 ~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
.||..=..-++ ++++-|++|++.+..+++....++.|.
T Consensus 53 TpG~~r~~y~~--~E~chil~G~v~~T~d~Ge~v~~~aGD 90 (116)
T COG3450 53 TPGKFRVTYDE--DEFCHILEGRVEVTPDGGEPVEVRAGD 90 (116)
T ss_pred cCccceEEccc--ceEEEEEeeEEEEECCCCeEEEEcCCC
Confidence 45655555554 899999999999999999888888774
No 50
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=78.62 E-value=7.5 Score=29.29 Aligned_cols=46 Identities=9% Similarity=0.091 Sum_probs=34.8
Q ss_pred HHHHHHhhhcccccccCCcee-EecCCCCCeEEEEEeeeEEEEeCCc
Q psy17883 140 GCLRALAMHFTMSHSAPGDLL-YHTGESIDSLCFIVTGSLEVIQDDE 185 (195)
Q Consensus 140 ~~l~~l~~~l~~~~~~~g~~i-~~~g~~~~~~y~i~~G~v~v~~~~~ 185 (195)
...+.|..+-++..+.+|..+ +-.....+..++|.+|.|.+-+.++
T Consensus 13 ~L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsirr~d~ 59 (207)
T PRK11832 13 KLDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRREEN 59 (207)
T ss_pred HHHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEEecCC
Confidence 345667788888899999997 4444444689999999999965444
No 51
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=75.53 E-value=5 Score=27.51 Aligned_cols=45 Identities=11% Similarity=0.074 Sum_probs=36.5
Q ss_pred cccccccCCceeEecCCC-CCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 149 FTMSHSAPGDLLYHTGES-IDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 149 l~~~~~~~g~~i~~~g~~-~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
+....+.||..+-..-.+ .+...++++|++++..+ +....+..|.
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~-g~~~~l~~Gd 90 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE-GEKKELKAGD 90 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEec-CCceEecCCC
Confidence 557788999999888887 77999999999999887 5566666654
No 52
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=75.52 E-value=12 Score=30.95 Aligned_cols=72 Identities=10% Similarity=0.243 Sum_probs=45.5
Q ss_pred ceehhhhhhhheeeeecCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17883 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQMTSATAKYHDMLNNVRE 73 (195)
Q Consensus 2 Y~~sly~~~~tl~t~gygdi~p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~l~~ 73 (195)
|+.+|-+++..+.+++-++..........+++++.+++++.+.+.+..++..++-.+.-..-.++..+.+.+
T Consensus 101 Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i~~~iqv~~ii~~i~~~~~~~i~~ 172 (371)
T PF10011_consen 101 FIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHIARSIQVSNIIARIEEDARKAIDR 172 (371)
T ss_pred HHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 566777777777777754442333344677778888888888888888887776655444444433333333
No 53
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=75.30 E-value=6.8 Score=26.95 Aligned_cols=46 Identities=13% Similarity=-0.052 Sum_probs=30.1
Q ss_pred cccccccCCceeEecCCCCCeEEEEEeeeEEEE-eCCcEEEEeeccc
Q psy17883 149 FTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVI-QDDEVVAILDLIW 194 (195)
Q Consensus 149 l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~-~~~~~~~~l~~~~ 194 (195)
+....+.||..+-..-....++++|++|++++. .+++....+..|.
T Consensus 37 ~~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g~~~~L~aGD 83 (125)
T PRK13290 37 FHETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATGEVHPIRPGT 83 (125)
T ss_pred EEEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCCEEEEeCCCe
Confidence 344567888755432222247999999999998 5556666666664
No 54
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=71.42 E-value=27 Score=24.92 Aligned_cols=56 Identities=16% Similarity=0.263 Sum_probs=44.2
Q ss_pred cCChHHHHHHhhh-cccccccCCceeEecCC-CCCeEEEEEeeeEEEEeCCcEEEEee
Q psy17883 136 LASDGCLRALAMH-FTMSHSAPGDLLYHTGE-SIDSLCFIVTGSLEVIQDDEVVAILD 191 (195)
Q Consensus 136 ~~~~~~l~~l~~~-l~~~~~~~g~~i~~~g~-~~~~~y~i~~G~v~v~~~~~~~~~l~ 191 (195)
+.|+...++++.. .+.....+|+.-.-+|. +.|.+=++++|++.|..++.-+-.+.
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~g~fLH~I~ 71 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCDGRFLHYIY 71 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEECCEeeEeec
Confidence 5688888888766 77788899998776665 46799999999999998887655443
No 55
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=69.56 E-value=14 Score=25.36 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=29.3
Q ss_pred hhhcccccccCCcee-EecCCCCCeEEEEEeeeEEEEeCCc
Q psy17883 146 AMHFTMSHSAPGDLL-YHTGESIDSLCFIVTGSLEVIQDDE 185 (195)
Q Consensus 146 ~~~l~~~~~~~g~~i-~~~g~~~~~~y~i~~G~v~v~~~~~ 185 (195)
........+.||+-+ .+.....+++|+|++|+..+..++.
T Consensus 35 ~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~~~ 75 (127)
T COG0662 35 RYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIGGE 75 (127)
T ss_pred cEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEECCE
Confidence 345566777888885 4444446899999999999987643
No 56
>PRK09108 type III secretion system protein HrcU; Validated
Probab=69.25 E-value=24 Score=29.01 Aligned_cols=72 Identities=10% Similarity=-0.052 Sum_probs=51.4
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy17883 23 AETDNEKIFTICMMIIAALLYATIFGHVTTIIQQMTSATAKYHDMLNNVREFMKLHEVPKALSERVMDYVVS 94 (195)
Q Consensus 23 p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~l~~rv~~y~~~ 94 (195)
|......++..+..++..+..++++-.+.++.-+...-..+.+-.-+++++-.|+..-++.++.|.|+--.-
T Consensus 174 ~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvK~E~K~~EGdP~iK~rrRq~~re 245 (353)
T PRK09108 174 PPDLAQILWTVLMKLLAVAAGVFLLVGAADWKIQRWLFIRDNRMSKDEVKREHKESEGDPHIKGERKRLARE 245 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 444455566666666776766766666666666656555666666689999999999999999998775443
No 57
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=68.31 E-value=24 Score=28.92 Aligned_cols=73 Identities=11% Similarity=0.020 Sum_probs=50.9
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy17883 23 AETDNEKIFTICMMIIAALLYATIFGHVTTIIQQMTSATAKYHDMLNNVREFMKLHEVPKALSERVMDYVVST 95 (195)
Q Consensus 23 p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~l~~rv~~y~~~~ 95 (195)
|......+...+..+++.++.++++-.+.++.-+...-..+.+-.-+++++-.|+..-++.++.|.|+--+-.
T Consensus 172 ~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEvKdE~Ke~EGdP~iK~rrR~~~re~ 244 (349)
T PRK12721 172 AACGLPVVSTLIFWLWGGLLACYLVFGILDYSFQRYKIMKQLKMSKDDVKQEYKDSEGDPEIKQKRRELQSEI 244 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 4444455566666666666666666556666666555555556666899999999999999999998765543
No 58
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=68.29 E-value=25 Score=28.91 Aligned_cols=72 Identities=14% Similarity=0.105 Sum_probs=50.1
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy17883 23 AETDNEKIFTICMMIIAALLYATIFGHVTTIIQQMTSATAKYHDMLNNVREFMKLHEVPKALSERVMDYVVS 94 (195)
Q Consensus 23 p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~l~~rv~~y~~~ 94 (195)
|......+...+..+++.++.++++-.+.++.-+......+.+-.-+++++-.|+..-++.++.|.|+--.-
T Consensus 181 ~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~q~~~~~k~lkMSkqEVKdE~Ke~EGdP~iK~r~Rq~~re 252 (358)
T PRK13109 181 PSQLPELILTVAIRLVSAVAIATIVLVALDLVWARFHWRRSLRMTKQEIKDEHKQAEGDPSVKARLRSLAQD 252 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 333444455666666666666666666666666656556666666689999999999999999998775443
No 59
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=66.68 E-value=28 Score=28.52 Aligned_cols=72 Identities=11% Similarity=0.032 Sum_probs=48.9
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy17883 23 AETDNEKIFTICMMIIAALLYATIFGHVTTIIQQMTSATAKYHDMLNNVREFMKLHEVPKALSERVMDYVVS 94 (195)
Q Consensus 23 p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~l~~rv~~y~~~ 94 (195)
|......+...+..++..++.++++-.+.++.-+...-..+.+-.-+++++-.|+..-++.++.|.|+--+-
T Consensus 172 ~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lrMskqEVKdE~K~~EGdP~iK~rrR~~~re 243 (347)
T TIGR00328 172 LVQAITNFLDIAKSLLILVLLLLLVIAVFDYFFQRWQYIKSLKMTKQEVKDELKQSEGDPEVKGRIRQMQRE 243 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 333444555666666666666666655666666655555555566689999999999999999998775443
No 60
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=64.47 E-value=32 Score=28.11 Aligned_cols=73 Identities=8% Similarity=-0.056 Sum_probs=48.7
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy17883 23 AETDNEKIFTICMMIIAALLYATIFGHVTTIIQQMTSATAKYHDMLNNVREFMKLHEVPKALSERVMDYVVST 95 (195)
Q Consensus 23 p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~l~~rv~~y~~~~ 95 (195)
|......+...+..++..+..++++-.+.++.-+...-..+.+-.-+++++-.|+..-++.++.|.|+--+-.
T Consensus 171 ~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEvKdE~Ke~EGdP~iK~r~R~~~re~ 243 (342)
T TIGR01404 171 LDGLAPIVGELLKLLILVCLGFFLVVGLADFAFQRYLFMKDLKMSKDEVKREYKEQEGDPEIKSKRRELHQEI 243 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 3444444555566666666555555555566655555555555566899999999999999999988765543
No 61
>KOG1054|consensus
Probab=64.03 E-value=4.5 Score=35.25 Aligned_cols=52 Identities=8% Similarity=0.286 Sum_probs=41.7
Q ss_pred eehhhhhhhheeeeecCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17883 3 VTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQ 55 (195)
Q Consensus 3 ~~sly~~~~tl~t~gygdi~p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~ 55 (195)
..|+||++..+..-|. |+.|.+..+++.+-+|-++-.++.+-..++++.++.
T Consensus 597 fNsLWFsLgAFMQQG~-DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLT 648 (897)
T KOG1054|consen 597 FNSLWFSLGAFMQQGC-DISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLT 648 (897)
T ss_pred hHHHHHHHHHHHhcCC-CCCccccccceeccchhhhhhhhhhhhhhHHHHHHh
Confidence 3689999999999994 899999999998888877776666666666666554
No 62
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=63.82 E-value=33 Score=28.22 Aligned_cols=72 Identities=11% Similarity=0.049 Sum_probs=48.8
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy17883 23 AETDNEKIFTICMMIIAALLYATIFGHVTTIIQQMTSATAKYHDMLNNVREFMKLHEVPKALSERVMDYVVS 94 (195)
Q Consensus 23 p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~l~~rv~~y~~~ 94 (195)
|......+...+..++..++.++++-.+.++.-+...-..+.+-.-+++++-.|+..-++.++.|.|+--.-
T Consensus 179 ~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEVKdE~Ke~EGdP~iK~rrR~~~re 250 (359)
T PRK05702 179 LEAALGHALDLVLKLLLLVVLALLVIAAIDVPFQRWQYLKKLKMTKQEVKDEHKQSEGDPEVKGRIRQLQRE 250 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 334445555666666666666666655666666555555555556689999999999999999998775443
No 63
>PRK08156 type III secretion system protein SpaS; Validated
Probab=63.49 E-value=28 Score=28.69 Aligned_cols=73 Identities=7% Similarity=-0.050 Sum_probs=48.1
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy17883 23 AETDNEKIFTICMMIIAALLYATIFGHVTTIIQQMTSATAKYHDMLNNVREFMKLHEVPKALSERVMDYVVST 95 (195)
Q Consensus 23 p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~l~~rv~~y~~~~ 95 (195)
+......+...+..++..+..++++-.+.++.-+...-..+.+-.-+++++-.|+..-++.++.|+|+--+-.
T Consensus 167 ~~~~~~~~~~~~~~l~~~~~~~~lvia~~D~~~Qr~~~~k~lkMSkqEvKdE~Ke~EGdP~iK~r~R~~~re~ 239 (361)
T PRK08156 167 IVGLIVIWRELLVKLVLTFLACALIVLILDFIAEYFLHMKDMKMDKQEVKREYKEQEGNPEIKSKRREAHQEI 239 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 3333444455555555555555555555566655555555555566899999999999999999998755443
No 64
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=62.87 E-value=28 Score=28.98 Aligned_cols=73 Identities=11% Similarity=0.022 Sum_probs=47.8
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy17883 23 AETDNEKIFTICMMIIAALLYATIFGHVTTIIQQMTSATAKYHDMLNNVREFMKLHEVPKALSERVMDYVVST 95 (195)
Q Consensus 23 p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~l~~rv~~y~~~~ 95 (195)
|......+...+..++..++.++++-.+..+.-+...-..+.+-.-+++++-.|+..-++.++.|.|+--+-.
T Consensus 179 ~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvKdE~K~~EGdP~iK~r~Rq~~re~ 251 (386)
T PRK12468 179 PVAALGDALHLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDPHVKGRIRQQQRAM 251 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 3344444445555555555555555555566655555555555566899999999999999999998755544
No 65
>PRK06298 type III secretion system protein; Validated
Probab=59.88 E-value=44 Score=27.49 Aligned_cols=70 Identities=10% Similarity=-0.030 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy17883 27 NEKIFTICMMIIAALLYATIFGHVTTIIQQMTSATAKYHDMLNNVREFMKLHEVPKALSERVMDYVVSTW 96 (195)
Q Consensus 27 ~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~l~~rv~~y~~~~~ 96 (195)
...+...+..++..+..++++-.+.++.-+...-..+.+-.-+++++-.|+..-++.++.|.|+--+-.-
T Consensus 177 ~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvKdE~K~~EGdP~iK~rrR~~~re~~ 246 (356)
T PRK06298 177 AQIFKEILYKAVTSIGIFFLVVAVLDLVYQRHNFAKELKMEKFEVKQEFKDTEGNPEIKGRRRQIAQEIA 246 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 3334444444444444455554555555555555555555668999999999999999999887655433
No 66
>PRK07668 hypothetical protein; Validated
Probab=59.05 E-value=56 Score=25.52 Aligned_cols=61 Identities=10% Similarity=0.220 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HHHH-hcCCCCHhHHHhhCCHhHHHHHHHH
Q psy17883 62 AKYHDMLNNVREFMKLHEVPKALSERVMDYVV-STWA-MTKGLDTDKVLNYCPKDMKADICVH 122 (195)
Q Consensus 62 ~~~~~~~~~l~~~l~~~~l~~~l~~rv~~y~~-~~~~-~~~~~~~~~il~~lp~~L~~~i~~~ 122 (195)
.+-++-+.++..+++.+++|++-++.+..-+. +... +++|.+.++++.+=|.+.-+++...
T Consensus 4 keNeefl~~L~~yL~~~glseeeieeiL~Ei~~hLlEgQk~GkTA~~IfG~sPk~yA~EL~~~ 66 (254)
T PRK07668 4 KEGRKFLDDTRVYLIAKGIKEEDIESFLEDAELHLIEGEKDGKTVEDIFGDSPKEYANELVKE 66 (254)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCHHHHHHHHhcc
Confidence 34466778899999999999887777644443 3333 6678889999998665555555543
No 67
>KOG3676|consensus
Probab=58.08 E-value=88 Score=28.51 Aligned_cols=75 Identities=16% Similarity=0.328 Sum_probs=41.7
Q ss_pred eeeecCCcccCCch------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCCCHHHHH
Q psy17883 14 TSVGFGNVAAETDN------EKIFTICMMIIAALLYATIFGHVTTIIQQMTSAT-AKYHDMLNNVREFMKLHEVPKALSE 86 (195)
Q Consensus 14 ~t~gygdi~p~t~~------e~~~~i~~~~~g~~~~a~~i~~i~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~l~~~l~~ 86 (195)
.|+|+||.....+. -.++.++.+++.++..-.+|+.++.....-.... .+.+. .-...-.+-++.+|+.++.
T Consensus 601 ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~-Q~A~~iL~lErs~p~~~r~ 679 (782)
T KOG3676|consen 601 FTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKL-QWAATILMLERSLPPALRK 679 (782)
T ss_pred HhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHH-HHHHHHHHHHhcCCHHHHH
Confidence 57899997644433 1234444445555555556666666555444333 33322 2223334567899999888
Q ss_pred HHH
Q psy17883 87 RVM 89 (195)
Q Consensus 87 rv~ 89 (195)
+-+
T Consensus 680 ~~~ 682 (782)
T KOG3676|consen 680 RFR 682 (782)
T ss_pred HHh
Confidence 833
No 68
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=58.02 E-value=42 Score=29.79 Aligned_cols=71 Identities=11% Similarity=0.036 Sum_probs=47.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy17883 25 TDNEKIFTICMMIIAALLYATIFGHVTTIIQQMTSATAKYHDMLNNVREFMKLHEVPKALSERVMDYVVST 95 (195)
Q Consensus 25 t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~l~~rv~~y~~~~ 95 (195)
.....+...+..++..+..++++-.+.++.-+.....++.+-..+++++..|+..-+++++.|.|+--+..
T Consensus 437 ~~~~~~~~~~~~l~~~~~~~~~via~~D~~~q~~~~~k~lkMskqEvK~E~Ke~EGdP~iK~r~R~~~re~ 507 (609)
T PRK12772 437 YIITELKSLVISIFFRITLIMIIIAVADYVYQKYQYNKDLRMTKQEVKEEYKQDEGDPQIKAKIKQKQREM 507 (609)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 33444445555555555555555555566655555555556666899999999999999999987755443
No 69
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=53.31 E-value=78 Score=26.13 Aligned_cols=69 Identities=12% Similarity=0.031 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy17883 27 NEKIFTICMMIIAALLYATIFGHVTTIIQQMTSATAKYHDMLNNVREFMKLHEVPKALSERVMDYVVST 95 (195)
Q Consensus 27 ~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~l~~rv~~y~~~~ 95 (195)
...+..++.-++-.+..+.++-...+++-+...-..+.+-.-+++++-+++..-++.++.|+|+--.-.
T Consensus 183 ~~~~~~~~~~~~l~~~~~~liia~~D~~~qr~~~~k~lkMtKqEVKdE~K~sEGdPeVKsr~Rq~~re~ 251 (363)
T COG1377 183 LSIFMELLGKLLLAVLLLLLIVAAFDYFYQRFQYIKKLKMTKQEVKDEYKQSEGDPEVKSRIRQMQREI 251 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHhhccCChhhhHHHHHHHHHH
Confidence 333333333333333333333334444444444445555556789999999999999999998765543
No 70
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=52.94 E-value=32 Score=17.71 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhCCCC-----HHHHHHHHHHH
Q psy17883 67 MLNNVREFMKLHEVP-----KALSERVMDYV 92 (195)
Q Consensus 67 ~~~~l~~~l~~~~l~-----~~l~~rv~~y~ 92 (195)
+..++.++++.+++| ..|.+|+.+|+
T Consensus 5 ~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 356788888888887 45777776663
No 71
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=51.32 E-value=23 Score=20.81 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=19.4
Q ss_pred hCCCCHHHHHHHHHHHHHHHHhc
Q psy17883 77 LHEVPKALSERVMDYVVSTWAMT 99 (195)
Q Consensus 77 ~~~l~~~l~~rv~~y~~~~~~~~ 99 (195)
..++|++|++.+..|.+|...+.
T Consensus 8 fqkLPDdLKrEvldY~EfLlek~ 30 (65)
T COG5559 8 FQKLPDDLKREVLDYIEFLLEKK 30 (65)
T ss_pred HHHCcHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999987543
No 72
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=49.53 E-value=14 Score=21.59 Aligned_cols=17 Identities=18% Similarity=0.661 Sum_probs=14.4
Q ss_pred ceehhhhhhhheeeeec
Q psy17883 2 YVTALYFTMTCMTSVGF 18 (195)
Q Consensus 2 Y~~sly~~~~tl~t~gy 18 (195)
|+.++.|++...--+||
T Consensus 3 yivt~fWs~il~~vvgy 19 (57)
T PF11151_consen 3 YIVTFFWSFILGEVVGY 19 (57)
T ss_pred EEehhHHHHHHHHHHHH
Confidence 88899999888777777
No 73
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=48.26 E-value=32 Score=23.96 Aligned_cols=37 Identities=19% Similarity=0.191 Sum_probs=25.8
Q ss_pred hhcccccccCCceeEecCCC-CCeEEEEEeeeEEEEeC
Q psy17883 147 MHFTMSHSAPGDLLYHTGES-IDSLCFIVTGSLEVIQD 183 (195)
Q Consensus 147 ~~l~~~~~~~g~~i~~~g~~-~~~~y~i~~G~v~v~~~ 183 (195)
..+....+.||...-..-.. .+++++|++|+..+...
T Consensus 30 ~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~ 67 (146)
T smart00835 30 ISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVV 67 (146)
T ss_pred eEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEE
Confidence 44555667787776544433 66899999999988653
No 74
>KOG1052|consensus
Probab=47.74 E-value=33 Score=30.46 Aligned_cols=51 Identities=10% Similarity=0.243 Sum_probs=42.7
Q ss_pred hhhhhhhheeeeecCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17883 5 ALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQ 56 (195)
Q Consensus 5 sly~~~~tl~t~gygdi~p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~ 56 (195)
++|.++.++...| ++..|.+..-+++..+|.+++.++.+...+++++++..
T Consensus 385 ~~~~~~~~~~~q~-~~~~p~~~~~Rll~~~w~~~~lil~ssYTa~L~a~Lt~ 435 (656)
T KOG1052|consen 385 CLWLTVGSLLQQG-SDEIPRSLSTRLLLGAWWLFVLILISSYTANLTAFLTV 435 (656)
T ss_pred chhhhhHHHhccC-CCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4566666677777 44789999999999999999999999999999998875
No 75
>PRK12773 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=47.27 E-value=89 Score=27.78 Aligned_cols=74 Identities=8% Similarity=-0.014 Sum_probs=47.8
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy17883 23 AETDNEKIFTICMMIIAALLYATIFGHVTTIIQQMTSATAKYHDMLNNVREFMKLHEVPKALSERVMDYVVSTW 96 (195)
Q Consensus 23 p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~l~~rv~~y~~~~~ 96 (195)
|......+...+..++..+..++++-.+.++.-+...-..+.+-..+++++-.++..-+|.++.|.|+--+-.-
T Consensus 470 ~~~il~~i~~ll~~Lvl~vllvllVIAiiD~~~QR~~f~KkLKMSKQEVKdE~KEsEGDPeIKaRRRqlqREma 543 (646)
T PRK12773 470 LEQAVALVMNSSFKIFLIVGIILLAISIVDYLYQRYEYEESLKMTPSEAKREAKESDGDRSLQARRRQLARDMM 543 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 33334445555555555555555555555555554544555555568999999999999999999887655444
No 76
>PHA00672 hypothetical protein
Probab=46.43 E-value=43 Score=23.08 Aligned_cols=40 Identities=18% Similarity=0.156 Sum_probs=29.7
Q ss_pred hcccccccCCceeEecCCCCCeEEEEEeeeEEEEeCCcEEE
Q psy17883 148 HFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVA 188 (195)
Q Consensus 148 ~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~~~ 188 (195)
..+....++|..+.-+=-.-+.+ +|.+|.+.|+.+++...
T Consensus 48 YARei~IPkGt~LtG~~hkf~~~-ii~sG~itV~tdge~~r 87 (152)
T PHA00672 48 YARTIRIPAGVALTGALIKVSTV-LIFSGHATVFIGGEAVE 87 (152)
T ss_pred eEEEEeccCceeeeeeeeEeeEE-EEecccEEEEeCCcEEE
Confidence 34566678888777666555666 99999999999876543
No 77
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=46.39 E-value=55 Score=23.11 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhh
Q psy17883 33 ICMMIIAALLYATIFGHVTTIIQQMTSA-------------TAKYHDMLNNVREFMKL 77 (195)
Q Consensus 33 i~~~~~g~~~~a~~i~~i~~~~~~~~~~-------------~~~~~~~~~~l~~~l~~ 77 (195)
+++.++|..++|++++.+.+.-.....+ ..+|+++++...+..+.
T Consensus 10 lLi~vIglAL~aFIv~d~~~~~~~~~~~~~~VG~VnGe~Is~~ef~~~v~~~~~~~k~ 67 (145)
T PF13623_consen 10 LLIIVIGLALFAFIVGDFRSGSGFFGSSQNVVGEVNGEKISYQEFQQRVEQATENYKQ 67 (145)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcCCCCCeeEeECCEEcCHHHHHHHHHHHHHHHHH
Confidence 5778899999999998764433222111 56688888888866653
No 78
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=45.11 E-value=37 Score=26.50 Aligned_cols=45 Identities=20% Similarity=0.274 Sum_probs=28.0
Q ss_pred ccccccCCceeEe-cCCCC-CeEEEEEeeeEEEEeCCcEEEEeecccC
Q psy17883 150 TMSHSAPGDLLYH-TGESI-DSLCFIVTGSLEVIQDDEVVAILDLIWY 195 (195)
Q Consensus 150 ~~~~~~~g~~i~~-~g~~~-~~~y~i~~G~v~v~~~~~~~~~l~~~~~ 195 (195)
....+.||.-.-. ..+.+ +++.+|++|++++..++. ...|..|+|
T Consensus 61 ~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~~g~-~~~L~~Gd~ 107 (260)
T TIGR03214 61 YIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTAEGE-THELREGGY 107 (260)
T ss_pred EEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEECCE-EEEECCCCE
Confidence 3445566543211 12334 689999999999986554 347776653
No 79
>PF14841 FliG_M: FliG middle domain; PDB: 3HJL_A 3AJC_A 1LKV_X 3SOH_D 3USY_B 3USW_A.
Probab=44.40 E-value=50 Score=20.52 Aligned_cols=39 Identities=13% Similarity=0.302 Sum_probs=27.1
Q ss_pred HHHhhCCHhHHHHHHHHHhHHHhhcCCccccCChHHHHHHhhhcccc
Q psy17883 106 KVLNYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMHFTMS 152 (195)
Q Consensus 106 ~il~~lp~~L~~~i~~~~~~~~l~~~~~f~~~~~~~l~~l~~~l~~~ 152 (195)
+++..||+++|.++...+- -+..++++.++.+...++..
T Consensus 31 ~VL~~lp~e~r~~v~~Ria--------~~~~v~~~~i~~ie~~L~~~ 69 (79)
T PF14841_consen 31 EVLSQLPEELRAEVVRRIA--------RLESVSPEVIEEIEEVLEEK 69 (79)
T ss_dssp HHHHTS-HHHHHHHHHHHH--------TCCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHH--------ccCCCCHHHHHHHHHHHHHH
Confidence 5888888888877765544 45677888888877766543
No 80
>PF06971 Put_DNA-bind_N: Putative DNA-binding protein N-terminus; InterPro: IPR009718 This entry represents the C terminus (approximately 30 residues) of a number of Rex proteins. These are redox-sensing repressors that appear to be widespread among Gram-positive bacteria []. They modulate transcription in response to changes in cellular NADH/NAD(+) redox state. Rex is predicted to include a pyridine nucleotide-binding domain (Rossmann fold), and residues that might play key structural and nucleotide binding roles are highly conserved.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0051775 response to redox state, 0005737 cytoplasm; PDB: 3IL2_B 3IKT_A 3IKV_B 1XCB_F 2DT5_A 2VT3_A 2VT2_A 3KEO_B 3KET_A 3KEQ_A ....
Probab=43.17 E-value=62 Score=18.32 Aligned_cols=42 Identities=21% Similarity=0.419 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHHHHHHHHHH-hcCCCC---Hh---HHHhhCCHhHHHHH
Q psy17883 78 HEVPKALSERVMDYVVSTWA-MTKGLD---TD---KVLNYCPKDMKADI 119 (195)
Q Consensus 78 ~~l~~~l~~rv~~y~~~~~~-~~~~~~---~~---~il~~lp~~L~~~i 119 (195)
+++|....+|+-.|+.+.-. ...|.+ .. +.+.--|.++|+|+
T Consensus 1 k~Ip~~ti~RL~~Y~r~L~~l~~~G~~~vSS~~La~~~gi~~~qVRKDl 49 (50)
T PF06971_consen 1 KKIPKATIRRLPLYLRYLEQLKEEGVERVSSQELAEALGITPAQVRKDL 49 (50)
T ss_dssp -S-SHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHHTS-HHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCeeECHHHHHHHHCCCHHHhcccC
Confidence 47899999999999998765 333432 22 34444567777765
No 81
>PF07146 DUF1389: Protein of unknown function (DUF1389); InterPro: IPR010792 This family consists of several hypothetical bacterial proteins, which seem to be specific to Chlamydia pneumoniae (Chlamydophila pneumoniae). Members of this family are typically around 400 residues in length. The function of this family is unknown.
Probab=42.63 E-value=1.8e+02 Score=23.52 Aligned_cols=79 Identities=8% Similarity=0.012 Sum_probs=47.4
Q ss_pred hhCCCCHHHHHHHHHHHH-----HHHHhcCC-------------CCHhHHHhhCCHhHHHHHHHHHhHHH---hhcCC--
Q psy17883 76 KLHEVPKALSERVMDYVV-----STWAMTKG-------------LDTDKVLNYCPKDMKADICVHLNRKV---FNEHP-- 132 (195)
Q Consensus 76 ~~~~l~~~l~~rv~~y~~-----~~~~~~~~-------------~~~~~il~~lp~~L~~~i~~~~~~~~---l~~~~-- 132 (195)
+.+.+|..++..+++.|= +.-+++-. .....-+..+|++||..+...=..++ ++...
T Consensus 35 k~~~IP~gf~~vIk~~YP~~i~~~v~~q~LtiqE~r~li~~L~~~~~s~~l~~l~~~L~~kl~~FGi~~l~~~~~~~~Lp 114 (314)
T PF07146_consen 35 KNKNIPQGFRSVIKENYPKVIYDFVVKQDLTIQEFRLLIDGLRNISSSGSLESLPPKLKEKLEDFGIERLQSDCEGIDLP 114 (314)
T ss_pred cCCCCcHHHHHHHHHHCcHHHHHHHHHccCcHHHHHHHHHHHhhhccccccccCCHHHHHHHHHcChHHHHHhhcccCCC
Confidence 467778888887755442 22222211 12233456789999999887533333 33332
Q ss_pred -----ccccCChHHHHHHhhhcccccc
Q psy17883 133 -----AFRLASDGCLRALAMHFTMSHS 154 (195)
Q Consensus 133 -----~f~~~~~~~l~~l~~~l~~~~~ 154 (195)
+.++||--++.+..........
T Consensus 115 ~Ld~iLlknCPlYwL~kFI~lg~~~~~ 141 (314)
T PF07146_consen 115 DLDDILLKNCPLYWLKKFIDLGSREVP 141 (314)
T ss_pred CHHHHHHHcCCHHHHHHHHHhCCCccc
Confidence 2357888888888766666555
No 82
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=42.52 E-value=1.4e+02 Score=22.33 Aligned_cols=30 Identities=10% Similarity=0.061 Sum_probs=17.3
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy17883 21 VAAETDNEKIFTICMMIIAALLYATIFGHV 50 (195)
Q Consensus 21 i~p~t~~e~~~~i~~~~~g~~~~a~~i~~i 50 (195)
+.|.+.......++|+++..+++.+++..+
T Consensus 44 ~p~~~~~~~~~~l~w~~I~FliL~~lL~k~ 73 (204)
T PRK09174 44 FPPFDSTHYASQLLWLAITFGLFYLFMSRV 73 (204)
T ss_pred CCCCcchhccHHHHHHHHHHHHHHHHHHHH
Confidence 455555545556666666666666655444
No 83
>COG4792 EscU Type III secretory pathway, component EscU [Intracellular trafficking and secretion]
Probab=42.46 E-value=1.3e+02 Score=24.33 Aligned_cols=51 Identities=10% Similarity=-0.068 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy17883 42 LYATIFGHVTTIIQQMTSATAKYHDMLNNVREFMKLHEVPKALSERVMDYV 92 (195)
Q Consensus 42 ~~a~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~l~~rv~~y~ 92 (195)
..+|+.-.+..+..+......+.+-.-++++.-.++.+-+++++.+=|++=
T Consensus 192 ~~~ylv~sv~Dy~fqr~~~~K~lkMSKdEVkRE~Kd~eG~PeiKskRRq~~ 242 (349)
T COG4792 192 AVGYLVFSVADYAFQRYQILKELKMSKDEVKREYKDMEGDPEIKSKRRQLH 242 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHhcccCCchhhHHHHHHH
Confidence 444544445555444444444455555778888888888888887766543
No 84
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=40.89 E-value=65 Score=17.89 Aligned_cols=28 Identities=4% Similarity=0.344 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17883 42 LYATIFGHVTTIIQQMTSATAKYHDMLN 69 (195)
Q Consensus 42 ~~a~~i~~i~~~~~~~~~~~~~~~~~~~ 69 (195)
....+...+..+-......-..|+..-+
T Consensus 20 ~~p~i~~~i~~~~~~~~~em~~fk~~s~ 47 (53)
T PF01484_consen 20 TVPSIYNDIQNFQSELDDEMEEFKEISD 47 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 85
>PF01312 Bac_export_2: FlhB HrpN YscU SpaS Family; InterPro: IPR006135 Salmonella, and related proteobacteria, secrete large amounts of proteins into the culture media. The major secreted proteins are either flagellar proteins or virulence factors [], secreted through the flagellar or virulence export structures respectively. Both secretion systems penetrate the inner and outer membranes and their components bear substantial sequence similarity. Both the flagellar and needle like pilus look fairly similar to each other []. The type III secretion system is of great interest, as it is used to transport virulence factors from the pathogen directly into the host cell [] and is only triggered when the bacterium comes into close contact with the host. It is believed that the family of type III flagellar and pilus inner membrane proteins are used as structural moieties in a complex with several other subunits []. One such set of inner membrane proteins, labeled "S" here for nomenclature purposes, includes the Salmonella and Shigella SpaS, the Yersinia YscU, Rhizobium Y4YO, and the Erwinia HrcU genes, Salmonella FlhB and Escherichia coli EscU [, , , ]. Many of the proteins, in this entry, undergo autocatalytic cleavage promoted by cyclization of a conserved asparagine. These proteins belong to the MEROPS peptidase family N6. ; GO: 0009306 protein secretion, 0016020 membrane; PDB: 3C03_C 3BZT_A 3BZV_B 3BZP_A 3BZX_B 3BZL_B 3C00_A 3BZR_A 3BZY_A 3BZO_A ....
Probab=40.77 E-value=35 Score=27.85 Aligned_cols=71 Identities=14% Similarity=0.011 Sum_probs=20.9
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy17883 23 AETDNEKIFTICMMIIAALLYATIFGHVTTIIQQMTSATAKYHDMLNNVREFMKLHEVPKALSERVMDYVV 93 (195)
Q Consensus 23 p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~l~~rv~~y~~ 93 (195)
|......+...+..++..+..++++-.+.++.-+...-..+.+-..+++++-.|+..-++.++.|.|+--+
T Consensus 174 ~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEvK~E~Ke~EGdP~iK~rrR~~~r 244 (343)
T PF01312_consen 174 PAQLISVIASLLFRLLFAVLAALLVIAAIDFAYQRFEFEKKLKMSKQEVKDEHKESEGDPEIKSRRRQLQR 244 (343)
T ss_dssp -------------------------------------------HHHHHH--HHHCCCC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 44445555666666666666666665666666666666666677778999999999999999999876443
No 86
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=40.24 E-value=57 Score=19.10 Aligned_cols=28 Identities=18% Similarity=0.451 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCCHhHHHh
Q psy17883 78 HEVPKALSERVMDYVVSTWAMTKGLDTDKVLN 109 (195)
Q Consensus 78 ~~l~~~l~~rv~~y~~~~~~~~~~~~~~~il~ 109 (195)
..+|+.|.+.++.|++ .+..+|...+++
T Consensus 4 aeiPe~L~~~m~~fie----~hP~WDQ~Rl~~ 31 (57)
T PF10929_consen 4 AEIPEDLHQAMKDFIE----THPNWDQYRLFQ 31 (57)
T ss_pred ccccHHHHHHHHHHHH----cCCCchHHHHHH
Confidence 4689999999999886 556666665543
No 87
>KOG4440|consensus
Probab=39.61 E-value=18 Score=31.92 Aligned_cols=52 Identities=12% Similarity=0.308 Sum_probs=44.0
Q ss_pred ehhhhhhhheeeeecCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17883 4 TALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQ 55 (195)
Q Consensus 4 ~sly~~~~tl~t~gygdi~p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~ 55 (195)
.|+||+-..+...|-|+-.|.+..-+++.++|.-+.+++-|-..++++.++.
T Consensus 616 sAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAFLV 667 (993)
T KOG4440|consen 616 SAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLV 667 (993)
T ss_pred hhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehhhhhhhhhhee
Confidence 5788888888888988999999999999999998888877777777776664
No 88
>PLN03223 Polycystin cation channel protein; Provisional
Probab=39.18 E-value=3e+02 Score=27.30 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=11.4
Q ss_pred HHHhhCCHhHHHHHHHHHhHHHhhc
Q psy17883 106 KVLNYCPKDMKADICVHLNRKVFNE 130 (195)
Q Consensus 106 ~il~~lp~~L~~~i~~~~~~~~l~~ 130 (195)
.++.-+.++|-.+-..++.++.+..
T Consensus 1491 ~~~~~~~~~~d~~~l~~v~~~c~~~ 1515 (1634)
T PLN03223 1491 KVFTYLNKELDEAGLKRVLRRCVIE 1515 (1634)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 3555555444444444444444433
No 89
>PF10330 Stb3: Putative Sin3 binding protein; InterPro: IPR018818 This entry represents Sin3 binding proteins conserved in fungi. Sin3p does not bind DNA directly even though the yeast SIN3 gene functions as a transcriptional repressor. Sin3p is part of a large multiprotein complex []. Stb3 appears to bind directly to ribosomal RNA Processing Elements (RRPE) although there are no obvious domains which would accord with this, implying that Stb3 may be a novel RNA-binding protein [].
Probab=38.88 E-value=87 Score=20.25 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=27.3
Q ss_pred HHhhCCHhHHHHHHHHHhHHHhhcCCccccCChHHHHHHh-hhcc
Q psy17883 107 VLNYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALA-MHFT 150 (195)
Q Consensus 107 il~~lp~~L~~~i~~~~~~~~l~~~~~f~~~~~~~l~~l~-~~l~ 150 (195)
+++.=|-.+| ++...+-.++|-|+++|+.=.++|. ..|+
T Consensus 15 Ll~~GPLaIR-----hI~~~Lt~~vPgF~~ls~sKqRRLi~~ALE 54 (92)
T PF10330_consen 15 LLNHGPLAIR-----HITGYLTTSVPGFSDLSPSKQRRLIMAALE 54 (92)
T ss_pred HHhcCcHHHH-----HHHHHHhccCCCcccCCHHHHHHHHHHHHh
Confidence 4444455554 6666777889999999998777765 5555
No 90
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=38.75 E-value=15 Score=30.05 Aligned_cols=43 Identities=14% Similarity=0.281 Sum_probs=30.6
Q ss_pred eeeecCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17883 14 TSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQ 56 (195)
Q Consensus 14 ~t~gygdi~p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~ 56 (195)
..+|||+.......-.+..+...-+|+-+...++|.+.-++.+
T Consensus 303 ~~~G~G~PP~d~~S~lvi~i~~vgLG~P~l~li~Ggl~v~~~r 345 (350)
T PF15065_consen 303 FLIGYGSPPVDSFSPLVIMIMAVGLGVPLLLLILGGLYVCLRR 345 (350)
T ss_pred EecccCCCCccchhHHHHHHHHHHhhHHHHHHHHhhheEEEec
Confidence 3689998766666666667777777788888888877655543
No 91
>PRK11171 hypothetical protein; Provisional
Probab=38.59 E-value=68 Score=25.11 Aligned_cols=45 Identities=9% Similarity=0.107 Sum_probs=33.1
Q ss_pred hcccccccCCceeEec-CCCCCeEEEEEeeeEEEEeCCcEEEEeecc
Q psy17883 148 HFTMSHSAPGDLLYHT-GESIDSLCFIVTGSLEVIQDDEVVAILDLI 193 (195)
Q Consensus 148 ~l~~~~~~~g~~i~~~-g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~ 193 (195)
.|....+.||..+-.. .....+.++|++|+..+..++ ....+..|
T Consensus 185 ~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~~~-~~~~l~~G 230 (266)
T PRK11171 185 HVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRLNN-DWVEVEAG 230 (266)
T ss_pred EEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEECC-EEEEeCCC
Confidence 6666889999988874 555669999999999997543 34445444
No 92
>PRK11171 hypothetical protein; Provisional
Probab=37.03 E-value=66 Score=25.18 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=28.8
Q ss_pred cccccccCCceeEecCC--CCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 149 FTMSHSAPGDLLYHTGE--SIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 149 l~~~~~~~g~~i~~~g~--~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
+....+.||.-.-.... ..+++++|++|++++..+++ ...|..|+
T Consensus 63 ~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~~g~-~~~L~~GD 109 (266)
T PRK11171 63 QYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTLEGK-THALSEGG 109 (266)
T ss_pred EEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEECCE-EEEECCCC
Confidence 34455677765433322 24689999999999986544 45666554
No 93
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=36.65 E-value=1.1e+02 Score=22.84 Aligned_cols=35 Identities=14% Similarity=0.304 Sum_probs=22.1
Q ss_pred cccccccCCcee---------EecCCCCCeEEEEEeeeEEEEeC
Q psy17883 149 FTMSHSAPGDLL---------YHTGESIDSLCFIVTGSLEVIQD 183 (195)
Q Consensus 149 l~~~~~~~g~~i---------~~~g~~~~~~y~i~~G~v~v~~~ 183 (195)
+-...+.||... +.......++|++++|+..+.-+
T Consensus 70 ~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~ 113 (191)
T PRK04190 70 FGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQ 113 (191)
T ss_pred EEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEe
Confidence 344555777742 22222345999999999988643
No 94
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=36.04 E-value=75 Score=24.30 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=22.1
Q ss_pred cCCCCCeEEEEEeeeEEEEeCCcEEEEeecccC
Q psy17883 163 TGESIDSLCFIVTGSLEVIQDDEVVAILDLIWY 195 (195)
Q Consensus 163 ~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~~ 195 (195)
.++..+.+-|+.+|++.+...+.. ..+..|+|
T Consensus 79 ~d~~ae~~lfVv~Ge~tv~~~G~t-h~l~eggy 110 (264)
T COG3257 79 GDEGAETFLFVVSGEITVKAEGKT-HALREGGY 110 (264)
T ss_pred CCCcceEEEEEEeeeEEEEEcCeE-EEeccCCe
Confidence 344456899999999999876653 34555544
No 95
>PF10047 DUF2281: Protein of unknown function (DUF2281); InterPro: IPR018739 This domain is found in putative uncharacterised proteins, though some proteins contaning this domain are described as a transcritional regulator of the Xre family.
Probab=35.74 E-value=40 Score=20.23 Aligned_cols=23 Identities=17% Similarity=0.457 Sum_probs=19.8
Q ss_pred hCCCCHHHHHHHHHHHHHHHHhc
Q psy17883 77 LHEVPKALSERVMDYVVSTWAMT 99 (195)
Q Consensus 77 ~~~l~~~l~~rv~~y~~~~~~~~ 99 (195)
-+++|+.++..|..|.++...+.
T Consensus 9 i~~LP~~~~~Evldfi~fL~~k~ 31 (66)
T PF10047_consen 9 IQQLPEELQQEVLDFIEFLLQKY 31 (66)
T ss_pred HHHCCHHHHHHHHHHHHHHHHhc
Confidence 45789999999999999988765
No 96
>PF14633 SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_A.
Probab=35.52 E-value=84 Score=23.99 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=29.1
Q ss_pred HHhhcCCccccCChHHHHHHhhhcccccccCCceeEecCCCCC-eEEE
Q psy17883 126 KVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESID-SLCF 172 (195)
Q Consensus 126 ~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~-~~y~ 172 (195)
+=.-+.|.|++++-....+.+..+. .||.|++-...+. ++-+
T Consensus 33 ~R~I~HP~F~n~~~~qAe~~L~~~~-----~Ge~iIRPSSkG~dhL~v 75 (220)
T PF14633_consen 33 KRVIKHPLFKNFNYKQAEEYLADQD-----VGEVIIRPSSKGPDHLTV 75 (220)
T ss_dssp HHHHCSTTEESS-HHHHHHHHCCS------TT-EEEEE-TTTTTEEEE
T ss_pred cccccCCCccCCCHHHHHHHHhcCC-----CCCEEEeeCCCCCCeEEE
Confidence 3444789999999888888777663 6999999998874 4433
No 97
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=35.47 E-value=58 Score=25.42 Aligned_cols=48 Identities=10% Similarity=0.010 Sum_probs=33.5
Q ss_pred hhhcccccccCCceeE-ecCCCCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 146 AMHFTMSHSAPGDLLY-HTGESIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 146 ~~~l~~~~~~~g~~i~-~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
-..+....+.||..+- .+-....+.++|++|+-.+..+ +....+..|.
T Consensus 178 ~~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~~~~-g~~~~V~~GD 226 (260)
T TIGR03214 178 DMNVHILSFEPGASHPYIETHVMEHGLYVLEGKGVYNLD-NNWVPVEAGD 226 (260)
T ss_pred CcEEEEEEECCCcccCCcccccceeEEEEEeceEEEEEC-CEEEEecCCC
Confidence 4566778999999995 4555566889999999887543 4444455443
No 98
>KOG3300|consensus
Probab=35.04 E-value=1.6e+02 Score=20.54 Aligned_cols=71 Identities=8% Similarity=0.063 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcCCCCHhHHHh
Q psy17883 30 IFTICMMIIAALLYATIFGHVTTIIQQMTSATAKYHDMLNNVREFMKLHEVPKALSERVMDYVVSTWAMTKGLDTDKVLN 109 (195)
Q Consensus 30 ~~~i~~~~~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~~il~ 109 (195)
-++++..++|+..++.-. ... .....+..+++++-.++-+-+-|+..-.+++--.|.++.. .+.++++
T Consensus 35 g~t~~aa~~gatayG~~~----~~~-------~~kk~rr~kiEd~~a~nai~PiL~AErDr~~l~~lrkn~e-eEaeiMK 102 (146)
T KOG3300|consen 35 GMTMFAAVSGATAYGMYQ----VGQ-------GNKKRRRLKIEDYAARNAILPILQAERDRRFLSELRKNLE-EEAEIMK 102 (146)
T ss_pred cchhhhHHHHHHHHHHHH----HHh-------chhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHH-HHHHHHc
Confidence 356666666665544322 111 2223344556666666666666665554444444443332 2334555
Q ss_pred hCC
Q psy17883 110 YCP 112 (195)
Q Consensus 110 ~lp 112 (195)
+.|
T Consensus 103 dVP 105 (146)
T KOG3300|consen 103 DVP 105 (146)
T ss_pred cCC
Confidence 555
No 99
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=34.68 E-value=80 Score=22.77 Aligned_cols=38 Identities=8% Similarity=0.167 Sum_probs=23.8
Q ss_pred cCCcee-EecCCCCCeEEEEEeeeEEEEe-CCcE--EEEeecc
Q psy17883 155 APGDLL-YHTGESIDSLCFIVTGSLEVIQ-DDEV--VAILDLI 193 (195)
Q Consensus 155 ~~g~~i-~~~g~~~~~~y~i~~G~v~v~~-~~~~--~~~l~~~ 193 (195)
.||..- +... ..+++|++++|+..+-. +++. ...|..|
T Consensus 36 Gpn~R~d~H~~-~tdE~FyqleG~~~l~v~d~g~~~~v~L~eG 77 (159)
T TIGR03037 36 GPNARTDFHDD-PGEEFFYQLKGEMYLKVTEEGKREDVPIREG 77 (159)
T ss_pred CCCCCcccccC-CCceEEEEEcceEEEEEEcCCcEEEEEECCC
Confidence 555444 3343 37999999999999843 3232 4555555
No 100
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=34.22 E-value=96 Score=22.54 Aligned_cols=41 Identities=10% Similarity=0.000 Sum_probs=25.7
Q ss_pred cccCCceeE-ecCCCCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 153 HSAPGDLLY-HTGESIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 153 ~~~~g~~i~-~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
.+.||...- .--..++++.++++|++++..++ ....+..|.
T Consensus 113 ~~~pg~~~~~~~~h~~~E~~~Vl~G~~~~~~~~-~~~~l~~Gd 154 (185)
T PRK09943 113 TYQPGTTTGERIKHQGEEIGTVLEGEIVLTING-QDYHLVAGQ 154 (185)
T ss_pred EccCCCCcccccccCCcEEEEEEEeEEEEEECC-EEEEecCCC
Confidence 455665322 11234579999999999997755 344565553
No 101
>COG1615 Uncharacterized conserved protein [Function unknown]
Probab=34.22 E-value=47 Score=30.01 Aligned_cols=37 Identities=19% Similarity=0.425 Sum_probs=32.2
Q ss_pred hheeeeecCCcccCCchhHHHHHHHHHHHHHHHHHHH
Q psy17883 11 TCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIF 47 (195)
Q Consensus 11 ~tl~t~gygdi~p~t~~e~~~~i~~~~~g~~~~a~~i 47 (195)
.++++.||-|+...-+...+++.+.+++++.+|..++
T Consensus 220 g~~~GA~YTDI~~~lP~~~iL~aial~~aia~f~ai~ 256 (885)
T COG1615 220 GTFTGAGYTDINAQLPAKLILIAIALLCAIAFFSAIF 256 (885)
T ss_pred CcccccCceeeeeeccHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999987776655
No 102
>smart00511 ORANGE Orange domain. This domain confers specificity among members of the Hairy/E(SPL) family.
Probab=33.88 E-value=83 Score=17.02 Aligned_cols=36 Identities=14% Similarity=0.290 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHH
Q psy17883 61 TAKYHDMLNNVREFMKLH-EVPKALSERVMDYVVSTW 96 (195)
Q Consensus 61 ~~~~~~~~~~l~~~l~~~-~l~~~l~~rv~~y~~~~~ 96 (195)
...|.+-+.++..||... .+.+.++.++.+++....
T Consensus 4 ~~Gy~~C~~Ev~~fLs~~~~~~~~~~~~Ll~HL~~~~ 40 (45)
T smart00511 4 RSGYRECANEVSRFLSQLPGTDPDVRARLLSHLQTHL 40 (45)
T ss_pred HHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHH
Confidence 357889999999999865 568899999999987654
No 103
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=32.66 E-value=4e+02 Score=24.60 Aligned_cols=42 Identities=14% Similarity=0.252 Sum_probs=28.6
Q ss_pred hhCCHhHHHHHHHHHhHHH----hhcCCccccCChHHHHHHhhhcc
Q psy17883 109 NYCPKDMKADICVHLNRKV----FNEHPAFRLASDGCLRALAMHFT 150 (195)
Q Consensus 109 ~~lp~~L~~~i~~~~~~~~----l~~~~~f~~~~~~~l~~l~~~l~ 150 (195)
+++|+.||.++..+....+ +..-.+++.+|+....+++.++.
T Consensus 327 ~~lp~~lq~ri~~y~~~~~~~~~~~~~~~l~~Lp~~Lr~~i~~~l~ 372 (823)
T PLN03192 327 NRLPPRLKDQILAYMCLRFKAESLNQQQLIDQLPKSICKSICQHLF 372 (823)
T ss_pred cCCCHHHHHHHHHHHHHHHhhccccHHHHHHHcCHHHHHHHHHHHH
Confidence 4589999999887665433 22234567788888888877653
No 104
>PF10163 EnY2: Transcription factor e(y)2; InterPro: IPR018783 Enhancer of yellow 2 (EnY2) is a small transcription factor which is combined in a complex with the TAFII40 protein []. This protein is conserved from protozoa to humans.; PDB: 4DHX_C 3FWC_P 3M99_C 3KIK_A 3KJL_C 3FWB_C 3MHS_B 3MHH_B.
Probab=32.23 E-value=1.3e+02 Score=19.00 Aligned_cols=47 Identities=9% Similarity=0.157 Sum_probs=22.3
Q ss_pred HhhCCCCHHHHHHHHHHHHHHHHhcCCCCHhHHHhh--------CCHhHHHHHHHHH
Q psy17883 75 MKLHEVPKALSERVMDYVVSTWAMTKGLDTDKVLNY--------CPKDMKADICVHL 123 (195)
Q Consensus 75 l~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~~il~~--------lp~~L~~~i~~~~ 123 (195)
+..-+=-+.++.-+++..+- ......+.+++++. +|+++|.++...+
T Consensus 27 L~e~GW~d~vr~~~re~i~~--~g~~~~~~~~l~~~i~P~Ar~~VP~~vk~ell~~I 81 (86)
T PF10163_consen 27 LIECGWRDEVRQLCREIIRE--RGIDNLTFEDLLEEITPKARAMVPDEVKKELLQRI 81 (86)
T ss_dssp HHHTTHHHHHHHHHHHHHHH--H-TTTSBHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred HHHCChHHHHHHHHHHHHHh--hCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 33334444555555554443 11344566665544 4666666655444
No 105
>PRK11032 hypothetical protein; Provisional
Probab=32.13 E-value=2e+02 Score=20.82 Aligned_cols=25 Identities=12% Similarity=0.150 Sum_probs=12.4
Q ss_pred ccccCCceeE----ecCCCCCeEEEEEee
Q psy17883 152 SHSAPGDLLY----HTGESIDSLCFIVTG 176 (195)
Q Consensus 152 ~~~~~g~~i~----~~g~~~~~~y~i~~G 176 (195)
-.|..||++- ..-.++..+-|-.-|
T Consensus 112 g~Y~sGEvvg~G~LvC~~Cg~~~~~~~p~ 140 (160)
T PRK11032 112 GVYHSGEVVGLGNLVCEKCHHHLAFYTPE 140 (160)
T ss_pred CeeecceeeecceEEecCCCCEEEecCCC
Confidence 5667777643 333444444443333
No 106
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=31.96 E-value=94 Score=25.69 Aligned_cols=47 Identities=9% Similarity=-0.002 Sum_probs=31.7
Q ss_pred hcccccccCCceeEecCCC-CCeEEEEEeeeEEEEeC----CcEEEEeeccc
Q psy17883 148 HFTMSHSAPGDLLYHTGES-IDSLCFIVTGSLEVIQD----DEVVAILDLIW 194 (195)
Q Consensus 148 ~l~~~~~~~g~~i~~~g~~-~~~~y~i~~G~v~v~~~----~~~~~~l~~~~ 194 (195)
.+....+.||...-..=.. .++++++++|++++... ++....++.|.
T Consensus 246 s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~GD 297 (367)
T TIGR03404 246 AAAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNARTFDYQAGD 297 (367)
T ss_pred EEEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEEEEEECCCC
Confidence 4566777888877644444 67999999999988642 23344565553
No 107
>COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=31.94 E-value=54 Score=23.37 Aligned_cols=41 Identities=15% Similarity=0.081 Sum_probs=28.2
Q ss_pred ceehhhhhhhheeeeecCCcccCCchhHHHHHHHHHHHHHH
Q psy17883 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALL 42 (195)
Q Consensus 2 Y~~sly~~~~tl~t~gygdi~p~t~~e~~~~i~~~~~g~~~ 42 (195)
+..+.+|+..++++.|++++.|.+..........++.+...
T Consensus 118 ~~~~~~~~~~~l~~~G~~~vi~~~~~~~~~~~~~~~~~~~~ 158 (212)
T COG1226 118 RARDLDEAVETLTTVGADEVVPPTFESALLLARAALVGLGG 158 (212)
T ss_pred EeccchHHHHHHHHcCCCeeecHHHHHHHHHHHHHhcccCC
Confidence 34567899999999999988887765555444444444333
No 108
>PRK06771 hypothetical protein; Provisional
Probab=31.83 E-value=1.5e+02 Score=19.31 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17883 43 YATIFGHVTTIIQQMTSATAKYHDMLNNVREFMKL 77 (195)
Q Consensus 43 ~a~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~ 77 (195)
+.|+...+..+-...+.+....+.+++.+.+.+..
T Consensus 14 ~i~i~~~l~~~~~~~~~~~k~ie~~L~~I~~~~Gi 48 (93)
T PRK06771 14 FIYIVEKLTKIEKKTDARLKRMEDRLQLITKEMGI 48 (93)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33444455555555555556666666666665433
No 109
>PRK09109 motC flagellar motor protein; Reviewed
Probab=31.55 E-value=2.5e+02 Score=21.77 Aligned_cols=65 Identities=14% Similarity=0.218 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy17883 28 EKIFTICMMIIAALLYATIFGHVTTIIQQMTSATAKYHDMLNNVREFMKLHEVPKALSERVMDYV 92 (195)
Q Consensus 28 e~~~~i~~~~~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~l~~rv~~y~ 92 (195)
....+.+..+.|.++-..++.-++.-+......+...++.+.+--.-+.+..-|..+++|...|+
T Consensus 181 gIa~ALvtT~~Gl~vA~~~~~Pia~kl~~~~~~e~~~~~~i~egil~i~~g~~P~~~~~~L~~~l 245 (246)
T PRK09109 181 GIAVAFVATIYGVASANLLFLPVANKLKSIIHRQSRYREMLVEGLVAIAEGENPRSIELKLQGYL 245 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 34555666666655554555567777777666666666666666666677777888888888875
No 110
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=31.17 E-value=88 Score=22.37 Aligned_cols=18 Identities=28% Similarity=0.674 Sum_probs=15.2
Q ss_pred CeEEEEEeeeEEEEeCCc
Q psy17883 168 DSLCFIVTGSLEVIQDDE 185 (195)
Q Consensus 168 ~~~y~i~~G~v~v~~~~~ 185 (195)
|++.+|++|+.++..+++
T Consensus 96 DEi~~VlEG~L~i~~~G~ 113 (152)
T PF06249_consen 96 DEIKYVLEGTLEISIDGQ 113 (152)
T ss_dssp EEEEEEEEEEEEEEETTE
T ss_pred ceEEEEEEeEEEEEECCE
Confidence 689999999999986644
No 111
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=31.06 E-value=19 Score=29.83 Aligned_cols=39 Identities=18% Similarity=0.386 Sum_probs=28.4
Q ss_pred ehhhhhhhheeeeecC--CcccCCchhHHHHHHHHHHHHHH
Q psy17883 4 TALYFTMTCMTSVGFG--NVAAETDNEKIFTICMMIIAALL 42 (195)
Q Consensus 4 ~sly~~~~tl~t~gyg--di~p~t~~e~~~~i~~~~~g~~~ 42 (195)
.+++.++++++|.|+. |...-++.-+++.++.|++|.+-
T Consensus 234 ~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~~lMfIGg~~ 274 (390)
T TIGR00933 234 LSAFFQSSTLRTAGFSTIDFAALPTATLVLLLLLMFIGGCS 274 (390)
T ss_pred HHHHHHHhhccCCCccccChhhcCHHHHHHHHHHHHHcCCC
Confidence 4668888999999984 33444556677888888888654
No 112
>cd07070 NR_LBD_SF-1 The ligand binding domain of nuclear receptor steroidogenic factor 1, a member of nuclear receptor superfamily. The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD).
Probab=31.03 E-value=2.2e+02 Score=21.77 Aligned_cols=63 Identities=6% Similarity=-0.048 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHhHHHhhCCHhHHHHHHHHHhHHHhhcCCccccCChHHHHHHhhh
Q psy17883 82 KALSERVMDYVVSTWAMTKGLDTDKVLNYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMH 148 (195)
Q Consensus 82 ~~l~~rv~~y~~~~~~~~~~~~~~~il~~lp~~L~~~i~~~~~~~~l~~~~~f~~~~~~~l~~l~~~ 148 (195)
+.++.++..+++..-. .+.+....++.+.......+ ....++.+++|.|++++.+..-.|.+.
T Consensus 16 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~a~~~L--~~~VeWaK~lP~F~~L~~~DQi~LLk~ 78 (237)
T cd07070 16 DQVRARILGCLQEPQK--SRPDQPAPFGLLCRMADQTF--ISIVDWARRCMVFKELEVADQMTLLQN 78 (237)
T ss_pred HHHHHHHHHHHhhhhh--ccCCcccHHHHHHHHHHHHH--HHHHHHHHhCCChhhCCHHHHHHHHHH
Confidence 4456666666532211 12244445554443333333 345589999999999988766555443
No 113
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=30.73 E-value=4.1e+02 Score=24.11 Aligned_cols=33 Identities=12% Similarity=0.174 Sum_probs=29.1
Q ss_pred cCChHHHHHHhhhcccccccCCceeEecCCCCC
Q psy17883 136 LASDGCLRALAMHFTMSHSAPGDLLYHTGESID 168 (195)
Q Consensus 136 ~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~ 168 (195)
..++...++.+..++++....|++|+++|+..+
T Consensus 223 e~T~~~~~ea~~~v~~V~I~~gqiIv~~ge~It 255 (700)
T COG1480 223 EQTENLRQEALSKVEPVKISKGQIIVKEGEIIT 255 (700)
T ss_pred HHHHHHHHHHHhccCceEEecCceEeecCceec
Confidence 356778889999999999999999999999865
No 114
>PF08475 Baculo_VP91_N: Viral capsid protein 91 N-terminal; InterPro: IPR013682 This domain is found in Baculoviridae including the nucleopolyhedrovirus at the N terminus of the viral capsid protein 91 (VP91) [].
Probab=29.98 E-value=88 Score=23.11 Aligned_cols=23 Identities=13% Similarity=0.235 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhC
Q psy17883 56 QMTSATAKYHDMLNNVREFMKLH 78 (195)
Q Consensus 56 ~~~~~~~~~~~~~~~l~~~l~~~ 78 (195)
..+..++.|.+++.-+.+|||+.
T Consensus 20 ~~dFde~~F~~rL~Vl~EYlkrt 42 (183)
T PF08475_consen 20 YNDFDENEFDNRLQVLTEYLKRT 42 (183)
T ss_pred ccccchHHHHHHHHHHHHHHHhc
Confidence 34566899999999999999984
No 115
>PF14131 DUF4298: Domain of unknown function (DUF4298)
Probab=29.37 E-value=28 Score=22.42 Aligned_cols=38 Identities=13% Similarity=0.359 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHHHHhc
Q psy17883 62 AKYHDMLNNVREFMKLHEVPKALSERVMDYV-VSTWAMT 99 (195)
Q Consensus 62 ~~~~~~~~~l~~~l~~~~l~~~l~~rv~~y~-~~~~~~~ 99 (195)
.+..+.+..+.+.+.+-+-.....+++++|| .-.|...
T Consensus 10 ~~~~~~l~~le~~l~~~~~~~~~~~~L~~YY~s~~w~~d 48 (90)
T PF14131_consen 10 NEWCELLEELEEALEKWQEAQPDYRKLRDYYGSEEWMED 48 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHhHHHH
Confidence 3344444555555555444566778888888 6666544
No 116
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.17 E-value=1.6e+02 Score=24.01 Aligned_cols=51 Identities=14% Similarity=0.201 Sum_probs=34.5
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcCCCCHhHHHhhCCHhHHHHHHHH
Q psy17883 67 MLNNVREFMKLHEVPKALSERVMDYVVSTWAMTKGLDTDKVLNYCPKDMKADICVH 122 (195)
Q Consensus 67 ~~~~l~~~l~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~~il~~lp~~L~~~i~~~ 122 (195)
.++++.+++...+.|+--.+++.+++ | .++...-+-+.+||..+|+.+...
T Consensus 8 ~~~~~~~~~~~~g~~~~r~~qi~~~~---~--~~~~~~~~~~~~~~~~~r~~l~~~ 58 (343)
T PRK14469 8 SYEELVSEITELGLEKYRADQILDWI---Y--KKKVFNFDEMTNLSKDHRALLSEH 58 (343)
T ss_pred CHHHHHHHHHHcCCCchHHHHHHHHH---H--hcCCCCHHHhccccHHHHHHHhhc
Confidence 34667888888888876666655443 2 233444557788999999887665
No 117
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=29.16 E-value=61 Score=16.47 Aligned_cols=24 Identities=13% Similarity=0.396 Sum_probs=14.9
Q ss_pred HHHHHHHHhhCCCCH-----HHHHHHHHH
Q psy17883 68 LNNVREFMKLHEVPK-----ALSERVMDY 91 (195)
Q Consensus 68 ~~~l~~~l~~~~l~~-----~l~~rv~~y 91 (195)
..++.+.++..++|. .+.+|+.+|
T Consensus 6 ~~~Lk~~l~~~gl~~~G~K~~Lv~Rl~~~ 34 (35)
T smart00513 6 VSELKDELKKRGLSTSGTKAELVDRLLEA 34 (35)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHh
Confidence 356777788777764 355555544
No 118
>PF08294 TIM21: TIM21; InterPro: IPR013261 TIM21 interacts with the outer mitochondrial TOM complex and promotes the insertion of proteins into the inner mitochondrial membrane [].; PDB: 2CIU_A.
Probab=29.01 E-value=59 Score=23.00 Aligned_cols=43 Identities=7% Similarity=0.101 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17883 31 FTICMMIIAALLYATIFGHVTTIIQQMTSATAKYHDMLNNVRE 73 (195)
Q Consensus 31 ~~i~~~~~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~l~~ 73 (195)
....+.++|+.+.+.++=.+.+-+...+.....|.+.++.+++
T Consensus 10 ~~~~vil~G~gl~g~v~Y~l~sELFs~~s~~~ifn~A~~~i~~ 52 (145)
T PF08294_consen 10 SYFGVILAGLGLTGLVIYALFSELFSPSSPTRIFNRAVDRIKK 52 (145)
T ss_dssp ----------------------------HHHHHHHHHHHHHHH
T ss_pred eeeEeeeehHHHHHHhHHHHhHHHhCCCCchHHHHHHHHHHhc
Confidence 4445555666555555555555555567778888888888776
No 119
>PF14163 SieB: Superinfection exclusion protein B
Probab=28.21 E-value=2.1e+02 Score=20.02 Aligned_cols=51 Identities=4% Similarity=0.118 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy17883 41 LLYATIFGHVTTIIQQMTSATAKYHDMLNNVREFMKLHEVPKALSERVMDYVV 93 (195)
Q Consensus 41 ~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~l~~rv~~y~~ 93 (195)
+..||++..+...+...-.....-+++.+.+.+. -+.++++=+.-++.|+.
T Consensus 42 ~s~s~li~~~~~~~~~~~~~~~~~k~~~~~~~~~--l~~Lt~~EkavL~~~~~ 92 (151)
T PF14163_consen 42 FSVSYLIAQLLSFIYKEAKDRYQRKRKKKKIEKK--LNSLTPEEKAVLREFYI 92 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCCHHHHHHHHHHHH
Confidence 3344555555444432222222222233333333 34456665666666655
No 120
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=28.10 E-value=90 Score=18.28 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=15.5
Q ss_pred cccccCCceeEecCC---------CCCeEEEEEee
Q psy17883 151 MSHSAPGDLLYHTGE---------SIDSLCFIVTG 176 (195)
Q Consensus 151 ~~~~~~g~~i~~~g~---------~~~~~y~i~~G 176 (195)
.......|+++--|= .+|++++|.+|
T Consensus 23 ~~~k~~~DI~I~NGF~~~~d~~L~e~D~v~~IkkG 57 (57)
T PF14453_consen 23 KESKPDADIVILNGFPTKEDIELKEGDEVFLIKKG 57 (57)
T ss_pred HhhCCCCCEEEEcCcccCCccccCCCCEEEEEeCC
Confidence 334445666664442 35678888877
No 121
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=27.70 E-value=1.1e+02 Score=21.99 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=19.0
Q ss_pred ecCCCCCeEEEEEeeeEEEEeCCc
Q psy17883 162 HTGESIDSLCFIVTGSLEVIQDDE 185 (195)
Q Consensus 162 ~~g~~~~~~y~i~~G~v~v~~~~~ 185 (195)
......|++.+|++|+..+..+++
T Consensus 59 H~Hs~edEfv~ILeGE~~l~~d~~ 82 (161)
T COG3837 59 HWHSAEDEFVYILEGEGTLREDGG 82 (161)
T ss_pred cccccCceEEEEEcCceEEEECCe
Confidence 445567899999999999877655
No 122
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.54 E-value=1.8e+02 Score=23.84 Aligned_cols=51 Identities=14% Similarity=0.145 Sum_probs=33.3
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcCCCCHhHHHhhCCHhHHHHHHHH
Q psy17883 67 MLNNVREFMKLHEVPKALSERVMDYVVSTWAMTKGLDTDKVLNYCPKDMKADICVH 122 (195)
Q Consensus 67 ~~~~l~~~l~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~~il~~lp~~L~~~i~~~ 122 (195)
..+++.+++...+.|+--.+++.+ ..| .++...-+-+.+||..+|+.+...
T Consensus 11 ~~~~l~~~~~~~g~~~fra~Qi~~---wiy--~~~~~~~~~mt~l~~~~r~~L~~~ 61 (342)
T PRK14465 11 TLKELSEIMVSLGEKKFRAKQIYH---GLY--VNRYETWDQFTTFSKEVKEKLEEL 61 (342)
T ss_pred CHHHHHHHHHHcCCCchHHHHHHH---HHH--HcCCCCHHHhccccHHHHHHHhcc
Confidence 346678888888877655455443 333 333444557788999999887655
No 123
>TIGR02433 lysidine_TilS_C tRNA(Ile)-lysidine synthetase, C-terminal domain. TIGRFAMs model TIGR02432 describes the family of the N-terminal domain of tRNA(Ile)-lysidine synthetase. This family (TIGR02433) describes a small C-terminal domain of about 50 residues present in about half the members of family TIGR02432,and in no other protein. Characterized examples of tRNA(Ile)-lysidine synthetase from E. coli and Bacillus subtilis both contain this domain.
Probab=26.90 E-value=39 Score=18.36 Aligned_cols=19 Identities=21% Similarity=0.408 Sum_probs=14.6
Q ss_pred HHHHHHHhhCCCCHHHHHH
Q psy17883 69 NNVREFMKLHEVPKALSER 87 (195)
Q Consensus 69 ~~l~~~l~~~~l~~~l~~r 87 (195)
..++.++.+.++|+..+++
T Consensus 21 k~lkk~~~e~kiP~~~R~~ 39 (47)
T TIGR02433 21 KKLKKLFIDAKVPPWLRDR 39 (47)
T ss_pred chHHHHHHHcCCCHHHHcC
Confidence 3578888888888887665
No 124
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=26.89 E-value=1.9e+02 Score=23.97 Aligned_cols=51 Identities=6% Similarity=0.045 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcCCCCHhHHHhhCCHhHHHHHHHH
Q psy17883 67 MLNNVREFMKLHEVPKALSERVMDYVVSTWAMTKGLDTDKVLNYCPKDMKADICVH 122 (195)
Q Consensus 67 ~~~~l~~~l~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~~il~~lp~~L~~~i~~~ 122 (195)
..+++.+++...+.|+--.+++.+ ..| .++...-+-+.+||..+|+.+...
T Consensus 24 ~~~el~~~~~~~g~~~~r~~qi~~---w~y--~~~~~~~~~m~~l~~~~r~~l~~~ 74 (368)
T PRK14456 24 RRQELTELLARLGEPAWRAAQLHQ---WLF--SHRALSFEEMTTLSKPLRRKLAES 74 (368)
T ss_pred CHHHHHHHHHHcCCCchHHHHHHH---HHH--HcCCCCHHHhccccHHHHHHHhcc
Confidence 446677888888777655555433 333 333444567788999999887654
No 125
>PRK11677 hypothetical protein; Provisional
Probab=26.76 E-value=2.3e+02 Score=19.82 Aligned_cols=9 Identities=0% Similarity=0.143 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q psy17883 85 SERVMDYVV 93 (195)
Q Consensus 85 ~~rv~~y~~ 93 (195)
+..|..||.
T Consensus 49 kqeV~~HFa 57 (134)
T PRK11677 49 RQELVSHFA 57 (134)
T ss_pred HHHHHHHHH
Confidence 344445544
No 126
>PHA01757 hypothetical protein
Probab=26.36 E-value=1.7e+02 Score=18.37 Aligned_cols=47 Identities=13% Similarity=0.203 Sum_probs=32.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17883 25 TDNEKIFTICMMIIAALLYATIFGHVTTIIQQMTSATAKYHDMLNNVR 72 (195)
Q Consensus 25 t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~l~ 72 (195)
+..|-.+--|+...|.+.-.++++.+.-+... ..+.+.|.+.++.++
T Consensus 4 ~l~e~al~gf~a~~g~l~~~fii~e~~hlyne-k~~nenf~~AvD~m~ 50 (98)
T PHA01757 4 TLLEGALYGFFAVTGALSASFIIGEIVHLYNE-KQRNENFAKAIDQMS 50 (98)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HhhhHhHHHHHHHHH
Confidence 34566666777888888889999998887755 334555665555544
No 127
>COG3057 SeqA Negative regulator of replication initiationR [DNA replication, recombination, and repair]
Probab=26.31 E-value=71 Score=22.70 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy17883 66 DMLNNVREFMKLHEVPKALSERVMDY 91 (195)
Q Consensus 66 ~~~~~l~~~l~~~~l~~~l~~rv~~y 91 (195)
+++..++..|...++|..|.++|+.+
T Consensus 155 RK~~M~e~~MqsM~fP~~liekV~~~ 180 (181)
T COG3057 155 RKCSMIEHIMQSMQFPAELIEKVCGT 180 (181)
T ss_pred hHHHHHHHHHHHccCCHHHHHHHhcc
Confidence 56678889999999999999998765
No 128
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=25.99 E-value=1.6e+02 Score=24.14 Aligned_cols=51 Identities=10% Similarity=0.218 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcCCCCHhHHHhhCCHhHHHHHHHH
Q psy17883 67 MLNNVREFMKLHEVPKALSERVMDYVVSTWAMTKGLDTDKVLNYCPKDMKADICVH 122 (195)
Q Consensus 67 ~~~~l~~~l~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~~il~~lp~~L~~~i~~~ 122 (195)
..+++.+++...+.|+--.+++.++ . ..++...-+-+.+||+++|..+...
T Consensus 11 ~~~~l~~~~~~~g~~~~r~~qi~~~---~--~~~~~~~~~~m~~l~~~~r~~l~~~ 61 (349)
T PRK14463 11 TLQELEAFLAGQGKERFRAKQIFKW---L--YQRDARSFAEMTNLSKDLRAELEET 61 (349)
T ss_pred CHHHHHHHHHHcCCCchHHHHHHHH---H--HHhCCCCHHHhcccCHHHHHhhcCC
Confidence 3567788888888876655555333 2 3333444557788999999877654
No 129
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=25.72 E-value=2.3e+02 Score=23.08 Aligned_cols=50 Identities=6% Similarity=0.029 Sum_probs=32.6
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcCCCCHhHHHhhCCHhHHHHHHHHH
Q psy17883 68 LNNVREFMKLHEVPKALSERVMDYVVSTWAMTKGLDTDKVLNYCPKDMKADICVHL 123 (195)
Q Consensus 68 ~~~l~~~l~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~~il~~lp~~L~~~i~~~~ 123 (195)
.+++.+++...+.|+-=.++ -++..| +++.. -+-+.+||..+|+.+....
T Consensus 6 ~~~~~~~~~~~g~~~~r~~q---i~~~~~--~~~~~-~~~m~~l~~~~r~~l~~~~ 55 (336)
T PRK14470 6 GQDSRALARPAGISLEDARR---ITGAVI--GRGAP-LRSARNVRRSVLDEVDALA 55 (336)
T ss_pred HHHHHHHHHHcCCCcHHHHH---HHHHHH--hCCCC-HHHhccCCHHHHHHHhccc
Confidence 35677788888877654444 444333 33344 6677889999998887653
No 130
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=25.63 E-value=2.7e+02 Score=25.15 Aligned_cols=106 Identities=11% Similarity=0.116 Sum_probs=76.7
Q ss_pred hhCCCCHHHHHHHHHHHHHHHHhcCCCCHhHHHhhCCHhHHHHHHHHHhHHHhhcCCccccCChHHHHHHhhhccccccc
Q psy17883 76 KLHEVPKALSERVMDYVVSTWAMTKGLDTDKVLNYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSA 155 (195)
Q Consensus 76 ~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~~il~~lp~~L~~~i~~~~~~~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~ 155 (195)
+.+.+++..-+...-.|...+.-...-|..+++.-|-..|++++.+-..++...+=.++ .-++..+++.+...=..+..
T Consensus 330 ~~haf~Ps~fK~tIG~fn~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~-~~d~~~vKk~a~ecW~~H~k 408 (823)
T COG5560 330 NLHAFTPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLS-PGDDVVVKKKAKECWWEHLK 408 (823)
T ss_pred cccccChHHHHHHHhhhHHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCC-CcchHHHHHHHHHHHHHHHh
Confidence 44566666666666666665544444466788888888999888776665555444444 55667889999999999999
Q ss_pred CCceeE---ecCCCCCeEEEEEeeeEEEEe
Q psy17883 156 PGDLLY---HTGESIDSLCFIVTGSLEVIQ 182 (195)
Q Consensus 156 ~g~~i~---~~g~~~~~~y~i~~G~v~v~~ 182 (195)
+|+-|+ -+|-....++.=.-|.|.+.-
T Consensus 409 RNdSiItdLFqgmyKSTL~Cp~C~~vsitf 438 (823)
T COG5560 409 RNDSIITDLFQGMYKSTLTCPGCGSVSITF 438 (823)
T ss_pred cCcccHHHHHHHHhhceeeccCcCceeeee
Confidence 999888 567777778887788887753
No 131
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=25.21 E-value=1.8e+02 Score=18.52 Aligned_cols=17 Identities=18% Similarity=0.530 Sum_probs=13.9
Q ss_pred eEEEEEeeeEEEEeCCc
Q psy17883 169 SLCFIVTGSLEVIQDDE 185 (195)
Q Consensus 169 ~~y~i~~G~v~v~~~~~ 185 (195)
-.++|.+|.|+|.-.+.
T Consensus 35 ~vF~V~~G~v~Vti~~~ 51 (85)
T PF11699_consen 35 MVFYVIKGKVEVTIHET 51 (85)
T ss_dssp EEEEEEESEEEEEETTE
T ss_pred EEEEEEeCEEEEEEcCc
Confidence 67899999999976554
No 132
>PF13980 UPF0370: Uncharacterised protein family (UPF0370)
Probab=25.09 E-value=1.2e+02 Score=17.81 Aligned_cols=18 Identities=6% Similarity=0.361 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy17883 28 EKIFTICMMIIAALLYAT 45 (195)
Q Consensus 28 e~~~~i~~~~~g~~~~a~ 45 (195)
+++..+++.++|+++.++
T Consensus 6 dYWWiiLl~lvG~i~n~i 23 (63)
T PF13980_consen 6 DYWWIILLILVGMIINGI 23 (63)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567777888888776554
No 133
>PF13128 DUF3954: Protein of unknown function (DUF3954)
Probab=24.99 E-value=87 Score=17.81 Aligned_cols=16 Identities=13% Similarity=0.395 Sum_probs=13.7
Q ss_pred CCeEEEEEeeeEEEEe
Q psy17883 167 IDSLCFIVTGSLEVIQ 182 (195)
Q Consensus 167 ~~~~y~i~~G~v~v~~ 182 (195)
.+.+|++..|++....
T Consensus 9 ~ngiYiV~~G~v~~i~ 24 (50)
T PF13128_consen 9 ENGIYIVKDGEVTFIE 24 (50)
T ss_pred CCeEEEEECCeEEEcC
Confidence 4689999999999874
No 134
>PF09153 DUF1938: Domain of unknown function (DUF1938); InterPro: IPR015236 This domain, which is predominantly found in the archaeal protein O6-alkylguanine-DNA alkyltransferase, adopts a secondary structure consisting of a three stranded antiparallel beta-sheet and three alpha helices. The exact function has not, as yet, been defined, though it has been postulated that this domain may confer thermostability to the protein []. ; GO: 0005737 cytoplasm; PDB: 1MGT_A.
Probab=24.82 E-value=1.8e+02 Score=18.54 Aligned_cols=35 Identities=23% Similarity=0.376 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHh
Q psy17883 64 YHDMLNNVREFMKLHEVPKALSERVMDYVVSTWAM 98 (195)
Q Consensus 64 ~~~~~~~l~~~l~~~~l~~~l~~rv~~y~~~~~~~ 98 (195)
.++++.++.+++++++++-+|..+=..|=+..++-
T Consensus 37 l~eri~~L~~~L~kRgv~v~L~~~~S~yp~lV~~v 71 (86)
T PF09153_consen 37 LRERISRLIEFLKKRGVSVSLDEEPSDYPELVFKV 71 (86)
T ss_dssp HH-HHHHHHHHHHHTT------B---SHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCceeEEeecCCCchHHHHHH
Confidence 35599999999999999999888877776655543
No 135
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=24.67 E-value=2e+02 Score=18.41 Aligned_cols=58 Identities=3% Similarity=-0.036 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhh-CCCCHHHHHHHHHHHHHHHHhcCCCCHh----HHHhhCCHhHHHHHHHHHhH
Q psy17883 66 DMLNNVREFMKL-HEVPKALSERVMDYVVSTWAMTKGLDTD----KVLNYCPKDMKADICVHLNR 125 (195)
Q Consensus 66 ~~~~~l~~~l~~-~~l~~~l~~rv~~y~~~~~~~~~~~~~~----~il~~lp~~L~~~i~~~~~~ 125 (195)
.....+.+++.. .++++.-.+++++.++..-... .+.. .+-..++++.|..+...+..
T Consensus 19 ~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~r~~~l~~L~~ 81 (104)
T cd07313 19 EERAAIDRLLAERFGLDAEEAAELLAEAEALEEEA--PDLYEFTSLIKEHFDYEERLELVEALWE 81 (104)
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 445566777777 4899998899988876543222 3332 33344566777666655553
No 136
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=24.62 E-value=2.6e+02 Score=19.85 Aligned_cols=8 Identities=0% Similarity=0.484 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q psy17883 86 ERVMDYVV 93 (195)
Q Consensus 86 ~rv~~y~~ 93 (195)
.++..|.+
T Consensus 79 ~~~~~fi~ 86 (149)
T PF11694_consen 79 SQMVHFIE 86 (149)
T ss_pred HHHHHHHH
Confidence 34444444
No 137
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=24.46 E-value=2e+02 Score=23.54 Aligned_cols=50 Identities=12% Similarity=0.183 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcCCCCHhHHHhhCCHhHHHHHHH
Q psy17883 67 MLNNVREFMKLHEVPKALSERVMDYVVSTWAMTKGLDTDKVLNYCPKDMKADICV 121 (195)
Q Consensus 67 ~~~~l~~~l~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~~il~~lp~~L~~~i~~ 121 (195)
..+++.+++...+.|+--.+++ ++..| +++...-+-+.+||..+|..+..
T Consensus 8 ~~~~l~~~~~~~g~~~~r~~qi---~~w~~--~~~~~~~~~m~~l~~~~r~~l~~ 57 (345)
T PRK14457 8 SLAELEDWAVAQGQPAFRGRQL---HDWLY--NKGVRSLDEISVLPKAWRESLKD 57 (345)
T ss_pred CHHHHHHHHHHcCCCchHHHHH---HHHHH--hcCCCCHHHcCccCHHHHHHHhh
Confidence 3466788888888776544444 33333 33444455678899999988876
No 138
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=24.37 E-value=2.7e+02 Score=22.84 Aligned_cols=51 Identities=10% Similarity=0.290 Sum_probs=34.5
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcCCCCHhHHHhhCCHhHHHHHHHHH
Q psy17883 68 LNNVREFMKLHEVPKALSERVMDYVVSTWAMTKGLDTDKVLNYCPKDMKADICVHL 123 (195)
Q Consensus 68 ~~~l~~~l~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~~il~~lp~~L~~~i~~~~ 123 (195)
.+++.+++...+.|+--.+++.+++ ..++...-+-+.+||..+|..+....
T Consensus 7 ~~~l~~~~~~~g~~~~r~~qi~~~~-----~~~~~~~~~~m~~l~~~~r~~l~~~~ 57 (347)
T PRK14453 7 YGKMKQILSNLKLPDYRYEQITKAI-----FKQRIDNFEDMHILPKALRESLINEF 57 (347)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHH-----HhcCCCCHHHhccCCHHHHHHHHHHH
Confidence 4567788888888776555554432 33334455678889999998887653
No 139
>PF13107 DUF3964: Protein of unknown function (DUF3964)
Probab=24.31 E-value=89 Score=20.29 Aligned_cols=39 Identities=10% Similarity=0.052 Sum_probs=29.5
Q ss_pred HHhhcCCccccCChHHHHHHhhhcccccccCCceeEecC
Q psy17883 126 KVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTG 164 (195)
Q Consensus 126 ~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g 164 (195)
+-+.+.|+|.+-|.-.-+-|--.=+...|.|++.=+++-
T Consensus 4 E~I~~L~FFedKp~LAeQil~iEk~e~~~LP~qFEIkq~ 42 (109)
T PF13107_consen 4 ERIKQLPFFEDKPGLAEQILKIEKEEQVFLPNQFEIKQT 42 (109)
T ss_pred HHhhcCccccCCHHHHHHHHHHhhhhheeCCcceeEeec
Confidence 446678999988776666666677778899999877663
No 140
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=24.22 E-value=2.5e+02 Score=23.38 Aligned_cols=52 Identities=10% Similarity=0.106 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcCCCCHhHHHhhCCHhHHHHHHHHH
Q psy17883 67 MLNNVREFMKLHEVPKALSERVMDYVVSTWAMTKGLDTDKVLNYCPKDMKADICVHL 123 (195)
Q Consensus 67 ~~~~l~~~l~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~~il~~lp~~L~~~i~~~~ 123 (195)
..+++.+++...+.|.--.+++.+ ..| .++...-+-+.+||..+|..+....
T Consensus 28 ~~~el~~~~~~~g~~~~ra~Qi~~---wiy--~~~~~~~~~mt~l~k~~r~~L~~~~ 79 (373)
T PRK14459 28 TPAERREAVAELGLPAFRAKQLAR---HYF--GRLTADPAQMTDLPAAAREELAEAL 79 (373)
T ss_pred CHHHHHHHHHHcCCCcHHHHHHHH---HHH--hcCCCCHHHhcccCHHHHHHHHhhc
Confidence 446778888888877655555433 333 3344445567889999998877653
No 141
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=24.11 E-value=2e+02 Score=21.16 Aligned_cols=39 Identities=10% Similarity=0.132 Sum_probs=24.8
Q ss_pred cCCc-eeEecCCCCCeEEEEEeeeEEEEe-CCc--EEEEeeccc
Q psy17883 155 APGD-LLYHTGESIDSLCFIVTGSLEVIQ-DDE--VVAILDLIW 194 (195)
Q Consensus 155 ~~g~-~i~~~g~~~~~~y~i~~G~v~v~~-~~~--~~~~l~~~~ 194 (195)
.||. .-+.- +.++++|++++|+..+-. +++ ....+..|.
T Consensus 42 Gpn~r~d~H~-~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd 84 (177)
T PRK13264 42 GPNARTDFHY-DPGEEFFYQLEGDMYLKVQEDGKRRDVPIREGE 84 (177)
T ss_pred cCCccccccc-CCCceEEEEECCeEEEEEEcCCceeeEEECCCC
Confidence 5663 33333 567899999999988765 222 345566553
No 142
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.76 E-value=2.2e+02 Score=23.36 Aligned_cols=51 Identities=14% Similarity=0.283 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcCCCCHhHHHhhCCHhHHHHHHHH
Q psy17883 67 MLNNVREFMKLHEVPKALSERVMDYVVSTWAMTKGLDTDKVLNYCPKDMKADICVH 122 (195)
Q Consensus 67 ~~~~l~~~l~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~~il~~lp~~L~~~i~~~ 122 (195)
..+++.+++...+.|+-=.+++.++ .| .++...-+-+.+||..+|..+...
T Consensus 17 ~~~~l~~~~~~~g~~~~r~~qi~~~---~~--~~~~~~~~~m~~l~~~~r~~l~~~ 67 (356)
T PRK14455 17 TLDELQEWLVEQGEKKFRATQIWDW---LY--RKRVQSFEEMTNLSKDLREKLNDN 67 (356)
T ss_pred CHHHHHHHHHHcCCCchHHHHHHHH---HH--HcCCCCHHHhcccCHHHHHHHhcc
Confidence 3467788888888876655554433 33 333444557788999999887655
No 143
>PF04814 HNF-1_N: Hepatocyte nuclear factor 1 (HNF-1), N terminus; InterPro: IPR006899 This domain consists of the N terminus of homeobox-containing transcription factor HNF-1. This region contains a dimerisation sequence [] and an acidic region that may be involved in transcription activation. Mutations and the common Ala/Val 98 polymorphism in HNF-1 cause the type 3 form of maturity-onset diabetes of the young (MODY3) [].; GO: 0045893 positive regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2GYP_B 1IC8_B 2H8R_B 1G2Y_D 1F93_H 1G39_D 1G2Z_B 1JB6_B.
Probab=23.68 E-value=1.6e+02 Score=21.77 Aligned_cols=26 Identities=12% Similarity=0.336 Sum_probs=18.0
Q ss_pred HHHHHHHhhCCCCHHHHHHH----HHHHHH
Q psy17883 69 NNVREFMKLHEVPKALSERV----MDYVVS 94 (195)
Q Consensus 69 ~~l~~~l~~~~l~~~l~~rv----~~y~~~ 94 (195)
+.++.||.++++|+....++ .+|+..
T Consensus 121 eeIK~fl~~h~IsQ~~V~q~TGisQS~lSq 150 (180)
T PF04814_consen 121 EEIKAFLQQHNISQREVVQVTGISQSHLSQ 150 (180)
T ss_dssp HHHHHHHHHCT--CHHHHHHHT--HHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHhhhhHHHHHH
Confidence 67889999999998887776 455543
No 144
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=23.59 E-value=1.7e+02 Score=25.02 Aligned_cols=43 Identities=21% Similarity=0.245 Sum_probs=26.5
Q ss_pred ccccccCCceeE-ecCCCCCeEEEEEeeeEEEEeCCcEEEEeecc
Q psy17883 150 TMSHSAPGDLLY-HTGESIDSLCFIVTGSLEVIQDDEVVAILDLI 193 (195)
Q Consensus 150 ~~~~~~~g~~i~-~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~ 193 (195)
....+.||.-+= ......++.++|++|++++..+++. ..+..|
T Consensus 379 ~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~dg~~-~~l~~G 422 (468)
T TIGR01479 379 KRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIGDET-LLLTEN 422 (468)
T ss_pred EEEEECCCCccCccccCCCceEEEEEeeEEEEEECCEE-EEecCC
Confidence 344567776432 1223345778999999999876653 355544
No 145
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=23.37 E-value=2.3e+02 Score=20.72 Aligned_cols=28 Identities=7% Similarity=0.022 Sum_probs=19.4
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy17883 23 AETDNEKIFTICMMIIAALLYATIFGHV 50 (195)
Q Consensus 23 p~t~~e~~~~i~~~~~g~~~~a~~i~~i 50 (195)
|.--.+-++.+..+.+++...++++|-.
T Consensus 70 ~I~GlDP~~~~g~~t~a~g~lG~L~GP~ 97 (173)
T PF08566_consen 70 QIMGLDPFMVYGLATLACGALGWLVGPS 97 (173)
T ss_pred cccCcCHHHHHHHHHHHHHHHHHHhcch
Confidence 3334667777777888888888877643
No 146
>KOG2568|consensus
Probab=23.35 E-value=2.9e+02 Score=24.12 Aligned_cols=47 Identities=17% Similarity=0.140 Sum_probs=25.1
Q ss_pred hhhhhhheeeeecCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17883 6 LYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTII 54 (195)
Q Consensus 6 ly~~~~tl~t~gygdi~p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~ 54 (195)
+-.....++++|||=+.|. ++....=.+++..+++++--+..++..+
T Consensus 283 lsr~LlLIVSlGYGIVkP~--Lg~~l~rv~~ig~~~~i~s~i~~l~~~~ 329 (518)
T KOG2568|consen 283 LSRLLLLIVSLGYGIVKPT--LGGTLLRVCQIGVIYFIASEILGLARVI 329 (518)
T ss_pred HHHHHHHHHhcCcceEecC--cchHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 4455667889999977665 3333333344444444444443333333
No 147
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=23.33 E-value=3.9e+02 Score=21.39 Aligned_cols=90 Identities=11% Similarity=0.120 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhc--CCCCHhHHH----------hhCCHhHHHHHHHH------
Q psy17883 61 TAKYHDMLNNVREFMKLHEVPKALSERVMDYVVSTWAMT--KGLDTDKVL----------NYCPKDMKADICVH------ 122 (195)
Q Consensus 61 ~~~~~~~~~~l~~~l~~~~l~~~l~~rv~~y~~~~~~~~--~~~~~~~il----------~~lp~~L~~~i~~~------ 122 (195)
+.....-...+.+.....++|+...++...+|+-....+ ++.+.+.+. +..|.+++ +|...
T Consensus 119 er~l~~a~~~I~~~~~~L~Lp~~v~e~A~~iyk~~~~~~~~rgrs~~~i~AAclYiACR~~~~prtl~-eI~~~~~v~~k 197 (310)
T PRK00423 119 ERNLAFALSELDRIASQLGLPRSVREEAAVIYRKAVEKGLIRGRSIEGVVAAALYAACRRCKVPRTLD-EIAEVSRVSRK 197 (310)
T ss_pred hHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHcCCCcCHH-HHHHHhCCCHH
Confidence 444566667888999999999999999999999776554 444544432 56777776 32221
Q ss_pred ----HhHHHhhcCCcc--ccCChHHHHHHhhhccc
Q psy17883 123 ----LNRKVFNEHPAF--RLASDGCLRALAMHFTM 151 (195)
Q Consensus 123 ----~~~~~l~~~~~f--~~~~~~~l~~l~~~l~~ 151 (195)
.+..+++...+- ..-|..++..++..|..
T Consensus 198 ~i~~~~~~l~k~L~~~~~~~~p~~~i~r~~~~L~L 232 (310)
T PRK00423 198 EIGRCYRFLLRELNLKLPPTDPIDYVPRFASELGL 232 (310)
T ss_pred HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCC
Confidence 222333332221 11255777777777754
No 148
>PF14490 HHH_4: Helix-hairpin-helix containing domain; PDB: 3GPL_A 3E1S_A 3GP8_A.
Probab=22.85 E-value=1.5e+02 Score=18.99 Aligned_cols=28 Identities=11% Similarity=0.116 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy17883 66 DMLNNVREFMKLHEVPKALSERVMDYVV 93 (195)
Q Consensus 66 ~~~~~l~~~l~~~~l~~~l~~rv~~y~~ 93 (195)
....++..++...++|..+..++-+.|.
T Consensus 6 ~~~~~~~~~L~~~gl~~~~a~kl~~~yg 33 (94)
T PF14490_consen 6 RGLRELMAFLQEYGLSPKLAMKLYKKYG 33 (94)
T ss_dssp ---HHHHHHHHHTT--HHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 4556788899999999999999988865
No 149
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=22.72 E-value=1.9e+02 Score=20.52 Aligned_cols=39 Identities=26% Similarity=0.283 Sum_probs=30.2
Q ss_pred hhcccccccCCceeEec-CCCCCeEEEEEeeeEEEEeCCc
Q psy17883 147 MHFTMSHSAPGDLLYHT-GESIDSLCFIVTGSLEVIQDDE 185 (195)
Q Consensus 147 ~~l~~~~~~~g~~i~~~-g~~~~~~y~i~~G~v~v~~~~~ 185 (195)
-..+.....||..+-.+ ....++...|.+|+.++..++.
T Consensus 63 ~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~~~~ 102 (151)
T PF01050_consen 63 YKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTLDDE 102 (151)
T ss_pred EEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEECCE
Confidence 34677788999988755 5556699999999999987543
No 150
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.72 E-value=2.4e+02 Score=23.42 Aligned_cols=51 Identities=10% Similarity=0.158 Sum_probs=33.3
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcCCCCHhHHHhhCCHhHHHHHHHH
Q psy17883 67 MLNNVREFMKLHEVPKALSERVMDYVVSTWAMTKGLDTDKVLNYCPKDMKADICVH 122 (195)
Q Consensus 67 ~~~~l~~~l~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~~il~~lp~~L~~~i~~~ 122 (195)
..+++.+++...+.|+-=.+++ ++..| .++...-+-+.+||..+|+.+...
T Consensus 14 ~~~el~~~~~~~g~~~fRa~Qi---~~wiy--~~~~~~~~~mtnlpk~lR~~L~~~ 64 (371)
T PRK14461 14 NLAELTELLTAWGQPAFRARQL---YRHLY--VNLADSVLAMTDLPLALRERLTAE 64 (371)
T ss_pred CHHHHHHHHHHcCCCchHHHHH---HHHHH--HcCCCCHHHccccCHHHHHHHhhc
Confidence 4567788888888776544444 33333 334445557788999999877655
No 151
>KOG4069|consensus
Probab=22.28 E-value=2.7e+02 Score=19.39 Aligned_cols=19 Identities=16% Similarity=0.499 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHhhC
Q psy17883 60 ATAKYHDMLNNVREFMKLH 78 (195)
Q Consensus 60 ~~~~~~~~~~~l~~~l~~~ 78 (195)
.++.|+++++.+++|+...
T Consensus 99 tethYek~L~klskfl~~q 117 (154)
T KOG4069|consen 99 TETHYEKKLDKLSKFLNRQ 117 (154)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3688999999999998664
No 152
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.23 E-value=2.6e+02 Score=23.00 Aligned_cols=51 Identities=12% Similarity=0.130 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcCCCCHhHHHhhCCHhHHHHHHHH
Q psy17883 67 MLNNVREFMKLHEVPKALSERVMDYVVSTWAMTKGLDTDKVLNYCPKDMKADICVH 122 (195)
Q Consensus 67 ~~~~l~~~l~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~~il~~lp~~L~~~i~~~ 122 (195)
..+++.+++...+.|+-=.+++.++ .| .++...-+-+.+||..+|..+...
T Consensus 8 ~~~~l~~~~~~~g~~~~r~~qi~~~---~~--~~~~~~~~~m~~l~~~~r~~l~~~ 58 (348)
T PRK14467 8 NLEELEEFVVELGWEKYRAKQIAKW---VY--KKKVTDFDEMTDLSKEDRQLLKEN 58 (348)
T ss_pred CHHHHHHHHHHcCCCchHHHHHHHH---HH--hcCCCCHHHhccccHHHHHHHhcC
Confidence 3466788888888776655555433 33 333444556788999999877654
No 153
>PRK00378 nucleoid-associated protein NdpA; Validated
Probab=22.16 E-value=3.4e+02 Score=21.94 Aligned_cols=56 Identities=16% Similarity=0.287 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHHHHhcCCCCHhHHHhhCCHhH
Q psy17883 60 ATAKYHDMLNNVREFMKLHEVPKA----LSERVMDYVVSTWAMTKGLDTDKVLNYCPKDM 115 (195)
Q Consensus 60 ~~~~~~~~~~~l~~~l~~~~l~~~----l~~rv~~y~~~~~~~~~~~~~~~il~~lp~~L 115 (195)
.+.+-+.-++.+.+|.+...+++. .++++.+|..-..+.+...+.+++-+.+++.-
T Consensus 194 ~k~~tk~l~~av~~~~~~~~~d~~~~~~~~~~v~~y~~~~~~~~~~i~i~els~~v~~~~ 253 (334)
T PRK00378 194 TKAQNRTLLQAVSDFCASADLDKEERQEVRKQVYDYCNEQLKAGEEIELEELSEELPELG 253 (334)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCCcEEHHHHHhhcccCC
Confidence 356666777888999999999885 45556666777766666677777777776553
No 154
>PF07527 Hairy_orange: Hairy Orange; InterPro: IPR003650 This domain confers specificity among members of the Hairy/E(SPL) family. HES-2 (hairy and enhancer of split 2) is a transcription factor, and the hairy protein is a pair-rule protein that regulates embryonic segmentation and adult bristle patterning. These proteins are transcriptional repressors of genes that require the BHLH protein for their transcription.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DB7_A.
Probab=21.95 E-value=1.5e+02 Score=15.90 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHH
Q psy17883 61 TAKYHDMLNNVREFMKLH-EVPKALSERVMDYVVST 95 (195)
Q Consensus 61 ~~~~~~~~~~l~~~l~~~-~l~~~l~~rv~~y~~~~ 95 (195)
...|.+-+.++..||... ++.+.++.|+.+++...
T Consensus 4 ~~Gy~~C~~Ev~~fL~~~~~~~~~~~~rLl~HL~~~ 39 (43)
T PF07527_consen 4 RAGYSECLNEVSRFLSSVEGVDPGVRARLLSHLQSC 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHTS---THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Confidence 567888999999998655 45678999999988754
No 155
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.49 E-value=2.6e+02 Score=22.94 Aligned_cols=51 Identities=14% Similarity=0.285 Sum_probs=32.2
Q ss_pred HHHHHHHHHh-hCCCCHHHHHHHHHHHHHHHHhcCCCCHhHHHhhCCHhHHHHHHHH
Q psy17883 67 MLNNVREFMK-LHEVPKALSERVMDYVVSTWAMTKGLDTDKVLNYCPKDMKADICVH 122 (195)
Q Consensus 67 ~~~~l~~~l~-~~~l~~~l~~rv~~y~~~~~~~~~~~~~~~il~~lp~~L~~~i~~~ 122 (195)
.++++.+++. ..+.|+--.+++.+ ..| .++...-+-+.+||..+|+.+...
T Consensus 8 ~~~~l~~~~~~~~g~~~~r~~qi~~---~~~--~~~~~~~~~m~~l~~~~r~~l~~~ 59 (354)
T PRK14460 8 TYPELEAFITAELGEPRFRARQIWQ---WLW--QKGARDFDSMTNVSKALRARLAEK 59 (354)
T ss_pred CHHHHHHHHHHhcCCCchHHHHHHH---HHH--HcCCCCHHHhccccHHHHHHHhcc
Confidence 3456777887 77777654444433 333 333344556788999999887765
No 156
>PF02330 MAM33: Mitochondrial glycoprotein; InterPro: IPR003428 This mitochondrial matrix protein family contains members of the MAM33 family which bind to the globular 'heads' of C1Q.; GO: 0005759 mitochondrial matrix; PDB: 3QV0_A 1YQF_F 3JV1_A 1P32_A 3RPX_A.
Probab=21.46 E-value=2.5e+02 Score=20.79 Aligned_cols=30 Identities=10% Similarity=0.260 Sum_probs=23.2
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy17883 67 MLNNVREFMKLHEVPKALSERVMDYVVSTW 96 (195)
Q Consensus 67 ~~~~l~~~l~~~~l~~~l~~rv~~y~~~~~ 96 (195)
-.+.+.+||..|++...+...+..|...+-
T Consensus 160 Lq~~~~~yLeeRGId~~la~fl~~y~~~kE 189 (204)
T PF02330_consen 160 LQDAFMNYLEERGIDEELANFLHDYSTDKE 189 (204)
T ss_dssp HHHHHHHHHHHTT-SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 345788899999999999999988877653
No 157
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=21.39 E-value=1.9e+02 Score=16.98 Aligned_cols=31 Identities=10% Similarity=0.239 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Q psy17883 62 AKYHDMLNNVREFMKLH-EVPKALSERVMDYV 92 (195)
Q Consensus 62 ~~~~~~~~~l~~~l~~~-~l~~~l~~rv~~y~ 92 (195)
....++.-.+.+|++.. ++++.-.+++++.|
T Consensus 36 ~~i~~~yGs~e~Yl~~~lgl~~~~i~~Lr~~l 67 (68)
T PF13348_consen 36 DAIDERYGSVENYLREELGLSEEDIERLRERL 67 (68)
T ss_dssp HHHHHHHSSHHHHHHHT-T--HHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHcCCCCHHHHHHHHHHc
Confidence 34455667788999666 99999888888754
No 158
>PRK13481 glycosyltransferase; Provisional
Probab=21.37 E-value=1.9e+02 Score=22.26 Aligned_cols=38 Identities=11% Similarity=0.232 Sum_probs=27.0
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHHHhcCCCCHhHHHh
Q psy17883 72 REFMKLHEVPKALSERVMDYVVSTWAMTKGLDTDKVLN 109 (195)
Q Consensus 72 ~~~l~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~~il~ 109 (195)
..+....++|+.+++-+..-=+..+.++.|+|...+.+
T Consensus 45 ~~~v~~~~ip~~l~~AviA~ED~rFy~H~GvD~~~i~r 82 (232)
T PRK13481 45 SSFVSADNMPEYVKGAFISMEDERFYKHHGFDLKGTTR 82 (232)
T ss_pred CccccHHHcCHHHHHHHHHHhcCccccCCCCCHHHHHH
Confidence 45566678899999888776666666778888765444
No 159
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=21.31 E-value=1e+02 Score=19.42 Aligned_cols=26 Identities=4% Similarity=-0.105 Sum_probs=21.9
Q ss_pred HhhCCCCHHHHHHHHHHHHHHHHhcC
Q psy17883 75 MKLHEVPKALSERVMDYVVSTWAMTK 100 (195)
Q Consensus 75 l~~~~l~~~l~~rv~~y~~~~~~~~~ 100 (195)
|++++.+++-...+++.|+..+..+.
T Consensus 23 LrR~Gfs~~~i~~l~~ayr~l~~~~~ 48 (83)
T PF13720_consen 23 LRRRGFSKEEISALRRAYRILFRSGL 48 (83)
T ss_dssp HHHTTS-HHHHHHHHHHHHHHHTSSS
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhCCC
Confidence 68899999999999999999997554
No 160
>PF03579 SHP: Small hydrophobic protein; InterPro: IPR005327 The small hydrophobic integral membrane protein, SH (previously designated 1A) is found to have a variety of glycosylated forms [, ]. This protein is a component of the mature respiratory syncytial virion [] where it may form complexes and appears to play a structural role.; GO: 0016020 membrane, 0016021 integral to membrane, 0048222 glycoprotein network
Probab=21.24 E-value=1.9e+02 Score=16.95 Aligned_cols=27 Identities=15% Similarity=0.399 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17883 30 IFTICMMIIAALLYATIFGHVTTIIQQ 56 (195)
Q Consensus 30 ~~~i~~~~~g~~~~a~~i~~i~~~~~~ 56 (195)
-|+.+.|++-..++..+++.++.++..
T Consensus 17 YFtLi~M~lti~~~~Iv~si~~AILNK 43 (64)
T PF03579_consen 17 YFTLIFMMLTIGFFFIVTSIMAAILNK 43 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366667777767776666666665543
No 161
>PLN02804 chalcone isomerase
Probab=21.18 E-value=2.4e+02 Score=21.29 Aligned_cols=46 Identities=9% Similarity=0.046 Sum_probs=37.9
Q ss_pred HHHHHHhHHHhhcCCccccCChHHHHHHhhhcccccccCCceeEec
Q psy17883 118 DICVHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHT 163 (195)
Q Consensus 118 ~i~~~~~~~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~ 163 (195)
+-..+.+...+++.-...+-....++.+....+.+.++||..|.-.
T Consensus 101 ~~~ee~~~~rlk~~~~y~d~e~~aL~kf~~~Fk~~~fp~Gs~I~ft 146 (206)
T PLN02804 101 VQLESSVRDRLAEDDKYEEEEEEALEKVVEFFQSKYFKKNSIITYH 146 (206)
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhCCCcCCCCCEEEEE
Confidence 3445667777878777778888999999999999999999988755
No 162
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=21.14 E-value=1.7e+02 Score=16.50 Aligned_cols=27 Identities=11% Similarity=0.276 Sum_probs=20.9
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy17883 68 LNNVREFMKLHEVPKALSERVMDYVVS 94 (195)
Q Consensus 68 ~~~l~~~l~~~~l~~~l~~rv~~y~~~ 94 (195)
.+.+.+......+++++..+|..-|.-
T Consensus 16 ~dtLDeli~~~~I~p~La~kVL~~FDk 42 (49)
T PF02268_consen 16 TDTLDELIQEGKITPQLAMKVLEQFDK 42 (49)
T ss_dssp HHHHHHHHHTTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 356777888999999999999887754
No 163
>COG1422 Predicted membrane protein [Function unknown]
Probab=20.95 E-value=3.7e+02 Score=20.22 Aligned_cols=18 Identities=6% Similarity=0.200 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy17883 60 ATAKYHDMLNNVREFMKL 77 (195)
Q Consensus 60 ~~~~~~~~~~~l~~~l~~ 77 (195)
+-.+.++.++++++..++
T Consensus 73 km~~~qk~m~efq~e~~e 90 (201)
T COG1422 73 KMKELQKMMKEFQKEFRE 90 (201)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345556666666665544
No 164
>PF10737 GerPC: Spore germination protein GerPC; InterPro: IPR019673 GerPC is required for the formation of functionally normal spores. The gerP locus encodes a number of proteins which are thought to be involved in the establishment of normal spore coat structure and/or permeability, which allows the access of germinants to their receptor [].
Probab=20.78 E-value=2.4e+02 Score=20.72 Aligned_cols=87 Identities=13% Similarity=0.194 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcC-CCCHhHHHhhCCHhHHHHHH
Q psy17883 42 LYATIFGHVTTIIQQMTSATAKYHDMLNNVREFMKLHEVPKALSERVMDYVVSTWAMTK-GLDTDKVLNYCPKDMKADIC 120 (195)
Q Consensus 42 ~~a~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~l~~rv~~y~~~~~~~~~-~~~~~~il~~lp~~L~~~i~ 120 (195)
+.+|+=..+...+... +.++...++.-..-+-...+-+.+-.||+-|++..-..+. ..++..+-+.+-..++++|.
T Consensus 88 v~~yL~~e~p~~l~~~---e~~~~~~ld~~y~~~IieDIrKQl~~RI~~YlqQ~~~~~~~~~~~~~~~~~I~~kvK~DI~ 164 (176)
T PF10737_consen 88 VHQYLEEEAPQRLEQL---EQQYNVPLDDSYRSFIIEDIRKQLPQRIQFYLQQVQPNEQMPPNEEAWEQQIIQKVKRDID 164 (176)
T ss_pred HHHHHHHHHHHHHHHH---HHHhCCCCcHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 4555555555544432 2333333333333332223333455666666654332221 12333344555556666666
Q ss_pred HHHhHHHhhcCC
Q psy17883 121 VHLNRKVFNEHP 132 (195)
Q Consensus 121 ~~~~~~~l~~~~ 132 (195)
..+. .+|.+.|
T Consensus 165 ~ai~-~FL~hLP 175 (176)
T PF10737_consen 165 KAID-HFLQHLP 175 (176)
T ss_pred HHHH-HHHHhCC
Confidence 5554 4444443
No 165
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.65 E-value=2.9e+02 Score=22.58 Aligned_cols=51 Identities=20% Similarity=0.371 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcCCCCHhHHHhhCCHhHHHHHHHH
Q psy17883 67 MLNNVREFMKLHEVPKALSERVMDYVVSTWAMTKGLDTDKVLNYCPKDMKADICVH 122 (195)
Q Consensus 67 ~~~~l~~~l~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~~il~~lp~~L~~~i~~~ 122 (195)
..+++.+++...+.|+--.+++.+ ..| .++...-+-+.+||..+|+.+...
T Consensus 8 ~~~~l~~~~~~~g~~~~r~~qi~~---~~~--~~~~~~~~~m~~l~~~~r~~l~~~ 58 (342)
T PRK14454 8 TLEELKEWMKENGEKKFRAKQIFD---WIY--KKGVTDFDEMTNIPKNLREKLKEN 58 (342)
T ss_pred CHHHHHHHHHHcCCCchHHHHHHH---HHH--HcCCCCHHHhccccHHHHHHHHhc
Confidence 346678888888887665555433 333 333444456778999999887765
No 166
>PF02285 COX8: Cytochrome oxidase c subunit VIII; InterPro: IPR003205 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits.This family is composed of cytochrome c oxidase subunit VIII. ; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG3_Z 3ABM_M 1OCC_Z 3ASO_Z 3AG2_Z 3ABL_M 3AG4_M 3AG1_M 3ASN_M 1OCZ_M ....
Probab=20.62 E-value=1.7e+02 Score=16.15 Aligned_cols=28 Identities=11% Similarity=0.173 Sum_probs=18.7
Q ss_pred cCCchhHHHHHHHHHHHHHHH-HHHHHHH
Q psy17883 23 AETDNEKIFTICMMIIAALLY-ATIFGHV 50 (195)
Q Consensus 23 p~t~~e~~~~i~~~~~g~~~~-a~~i~~i 50 (195)
|.+..|....+..++++.+.- +++++++
T Consensus 9 ~~s~~e~aigltv~f~~~L~PagWVLshL 37 (44)
T PF02285_consen 9 PLSPAEQAIGLTVCFVTFLGPAGWVLSHL 37 (44)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred CCCHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 667788888888888887766 4666555
No 167
>PF13867 SAP30_Sin3_bdg: Sin3 binding region of histone deacetylase complex subunit SAP30; PDB: 2LD7_A.
Probab=20.38 E-value=1.8e+02 Score=16.48 Aligned_cols=36 Identities=19% Similarity=0.384 Sum_probs=16.0
Q ss_pred HHHHHHHhhCCCC-------HHHHHHHHHHHHHHHHhcCCCCHhHHHh
Q psy17883 69 NNVREFMKLHEVP-------KALSERVMDYVVSTWAMTKGLDTDKVLN 109 (195)
Q Consensus 69 ~~l~~~l~~~~l~-------~~l~~rv~~y~~~~~~~~~~~~~~~il~ 109 (195)
..+..|.+..+++ ++|...|+++|. ....+|.+++.
T Consensus 4 ~tLrrY~~~~~l~~~~~~sK~qLa~~V~kHF~-----s~~v~E~evI~ 46 (53)
T PF13867_consen 4 PTLRRYKKHYKLPERPRSSKEQLANAVRKHFN-----SQPVDENEVIA 46 (53)
T ss_dssp HHHHHHHHHTT----SS--HHHHHHHHHHHHT-----T----HHHHHH
T ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh-----cCCCCHHHHHH
Confidence 3456677766665 344444555552 23356665543
No 168
>PF05992 SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009248 The Rhizobium meliloti (Sinorhizobium meliloti) bacA gene encodes a function that is essential for bacterial differentiation into bacteroids within plant cells in the symbiosis between R. meliloti and alfalfa. An Escherichia coli homologue of BacA, SbmA, is implicated in the uptake of microcins and bleomycin. This family is likely to be a subfamily of the ABC transporter family.; GO: 0005215 transporter activity, 0006810 transport, 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=20.38 E-value=4e+02 Score=21.65 Aligned_cols=46 Identities=13% Similarity=0.022 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17883 29 KIFTICMMIIAALLYATIFGHVTTIIQQMTSATAKYHDMLNNVREF 74 (195)
Q Consensus 29 ~~~~i~~~~~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~ 74 (195)
.+.++++.++|+.+.+.+=-.+..+--+.+..+..|++.+---++-
T Consensus 165 v~~ai~~s~~gt~~l~~vGikLPgLe~~nQkvEAAyRKeLV~gED~ 210 (315)
T PF05992_consen 165 VWAAIIWSLFGTILLAFVGIKLPGLEFNNQKVEAAYRKELVYGEDD 210 (315)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHHHHHHhcCcc
Confidence 3567777888887777777677777777777788888877544443
No 169
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=20.34 E-value=2.7e+02 Score=22.87 Aligned_cols=51 Identities=16% Similarity=0.201 Sum_probs=32.5
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcCCCCHhHHHhhCCHhHHHHHHHH
Q psy17883 67 MLNNVREFMKLHEVPKALSERVMDYVVSTWAMTKGLDTDKVLNYCPKDMKADICVH 122 (195)
Q Consensus 67 ~~~~l~~~l~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~~il~~lp~~L~~~i~~~ 122 (195)
.++++.+++...+.|+-=.+++ ++..| .++...-+-+.+||..+|+.+...
T Consensus 13 ~~~~l~~~~~~~g~~~~r~~qi---~~~~~--~~~~~~~~~m~~l~~~~r~~l~~~ 63 (355)
T TIGR00048 13 TLQELRQWLKDLGEKPFRAKQI---YKWLY--HKGKDSFDDMTNLSKDLREKLNRV 63 (355)
T ss_pred CHHHHHHHHHHcCCCchhHHHH---HHHHH--HcCCCCHHHccccCHHHHHHHhhc
Confidence 4567888888888776655554 33333 233333345588999999887654
No 170
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.21 E-value=3e+02 Score=22.84 Aligned_cols=51 Identities=14% Similarity=0.098 Sum_probs=32.3
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcCCCCHhHHHhhCCHhHHHHHHHH
Q psy17883 67 MLNNVREFMKLHEVPKALSERVMDYVVSTWAMTKGLDTDKVLNYCPKDMKADICVH 122 (195)
Q Consensus 67 ~~~~l~~~l~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~~il~~lp~~L~~~i~~~ 122 (195)
..+++.+++...+.|+--.+++ ++..| .++...-+-+.+||..+|..+...
T Consensus 12 ~~~el~~~~~~~g~~~~ra~qi---~~w~y--~~~~~~~~~mt~l~~~~r~~L~~~ 62 (372)
T PRK11194 12 NRQQMREFFAELGEKPFRADQV---MKWIY--HYGCDDFDEMTNINKVLREKLKEV 62 (372)
T ss_pred CHHHHHHHHHHcCCCchHHHHH---HHHHH--hcCCCCHHHhccccHHHHHHHhcc
Confidence 3466778888888776544444 33333 333344445778999999887655
No 171
>PF08730 Rad33: Rad33; InterPro: IPR014841 Rad33 is involved in nucleotide excision repair (NER). NER is the main pathway for repairing DNA lesions induced by UV. Cells deleted for RAD33 display intermediate UV sensitivity that is epistatic with NER [].
Probab=20.07 E-value=2.7e+02 Score=20.32 Aligned_cols=32 Identities=9% Similarity=0.371 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHh
Q psy17883 67 MLNNVREFMKLHEVPKALSERVMDYVVSTWAM 98 (195)
Q Consensus 67 ~~~~l~~~l~~~~l~~~l~~rv~~y~~~~~~~ 98 (195)
.+.++-+|++.-++|....+.|.+..+|.|+-
T Consensus 31 ~l~~Lp~~f~~L~IP~cfT~DI~~cidyyY~~ 62 (170)
T PF08730_consen 31 TLKDLPNYFEDLQIPKCFTKDINECIDYYYKF 62 (170)
T ss_pred eHHHHHHHHHHcCCChHHHHhHHHHHHHHHHh
Confidence 56789999999999999999999988888873
Done!