Query psy17883
Match_columns 195
No_of_seqs 124 out of 1874
Neff 9.6
Searched_HMMs 29240
Date Fri Aug 16 16:35:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17883.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17883hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ukn_A Novel protein similar t 100.0 7.9E-30 2.7E-34 191.2 10.1 143 52-195 2-144 (212)
2 3bpz_A Potassium/sodium hyperp 100.0 2.2E-28 7.5E-33 182.1 15.0 140 55-195 2-141 (202)
3 2ptm_A Hyperpolarization-activ 100.0 4.9E-28 1.7E-32 179.6 16.0 139 56-195 2-141 (198)
4 3beh_A MLL3241 protein; transm 99.9 1.5E-23 5.3E-28 168.6 6.3 133 2-194 162-294 (355)
5 4h33_A LMO2059 protein; bilaye 99.7 7.9E-18 2.7E-22 117.5 1.4 92 2-93 44-135 (137)
6 4f8a_A Potassium voltage-gated 99.6 6.6E-16 2.3E-20 109.8 8.9 91 104-194 5-95 (160)
7 3vou_A ION transport 2 domain 99.6 3.4E-16 1.2E-20 110.7 7.1 86 2-87 53-148 (148)
8 3eff_K Voltage-gated potassium 99.5 1.4E-14 4.7E-19 101.4 5.6 59 2-60 41-99 (139)
9 3ocp_A PRKG1 protein; serine/t 99.5 1.1E-13 3.6E-18 96.3 7.3 85 110-194 7-91 (139)
10 2ih3_C Voltage-gated potassium 99.4 9.9E-14 3.4E-18 94.8 4.8 58 2-59 62-119 (122)
11 2a9h_A Voltage-gated potassium 99.4 4.5E-14 1.6E-18 100.2 3.1 59 2-60 85-143 (155)
12 2k1e_A Water soluble analogue 99.4 5.1E-14 1.7E-18 93.4 2.6 57 2-58 41-97 (103)
13 3pjs_K KCSA, voltage-gated pot 99.4 2.6E-14 8.8E-19 102.9 0.1 60 2-61 68-127 (166)
14 2q67_A Potassium channel prote 99.4 1.3E-13 4.6E-18 93.0 3.3 57 2-58 50-106 (114)
15 3ouf_A Potassium channel prote 99.4 4.8E-13 1.7E-17 87.6 4.7 55 2-56 33-87 (97)
16 3ldc_A Calcium-gated potassium 99.4 4.9E-13 1.7E-17 84.9 4.4 53 2-54 29-81 (82)
17 3shr_A CGMP-dependent protein 99.3 2.5E-12 8.5E-17 100.5 7.1 89 106-194 19-107 (299)
18 2d93_A RAP guanine nucleotide 99.3 1.2E-12 4E-17 90.4 3.9 82 113-194 3-85 (134)
19 3pna_A CAMP-dependent protein 99.3 1.9E-11 6.7E-16 86.3 8.4 73 122-194 34-106 (154)
20 3um7_A Potassium channel subfa 99.2 2E-11 7E-16 95.3 7.2 75 2-82 116-190 (309)
21 3gyd_A CNMP-BD protein, cyclic 99.2 4E-11 1.4E-15 87.6 7.4 91 104-194 13-112 (187)
22 3of1_A CAMP-dependent protein 99.1 8.4E-11 2.9E-15 88.8 7.4 71 124-194 5-75 (246)
23 3idb_B CAMP-dependent protein 99.1 6.4E-11 2.2E-15 84.1 6.0 77 118-194 30-110 (161)
24 1vp6_A CNBD, cyclic-nucleotide 99.1 9.5E-11 3.3E-15 80.8 6.6 69 124-194 9-77 (138)
25 3mdp_A Cyclic nucleotide-bindi 99.1 1E-10 3.4E-15 81.0 5.4 70 125-194 5-82 (142)
26 1wgp_A Probable cyclic nucleot 99.1 1.3E-10 4.3E-15 80.2 4.6 57 126-182 6-62 (137)
27 2pqq_A Putative transcriptiona 99.1 3.9E-10 1.3E-14 78.5 7.0 70 125-194 4-78 (149)
28 2qcs_B CAMP-dependent protein 99.0 3.3E-10 1.1E-14 87.9 7.1 74 121-194 34-107 (291)
29 2z69_A DNR protein; beta barre 99.0 5.1E-10 1.7E-14 78.4 7.4 71 124-194 10-85 (154)
30 4din_B CAMP-dependent protein 99.0 3.9E-10 1.3E-14 91.3 7.2 76 120-195 124-199 (381)
31 2qks_A KIR3.1-prokaryotic KIR 99.0 1.9E-10 6.6E-15 90.6 4.7 55 2-56 79-133 (321)
32 3of1_A CAMP-dependent protein 99.0 1.1E-09 3.7E-14 82.7 8.6 74 122-195 121-195 (246)
33 1p7b_A Integral membrane chann 99.0 2.3E-10 7.7E-15 90.5 4.5 56 2-57 97-152 (333)
34 4ava_A Lysine acetyltransferas 99.0 9.1E-10 3.1E-14 87.1 7.4 71 124-194 11-85 (333)
35 3ukm_A Potassium channel subfa 99.0 4E-10 1.4E-14 86.8 4.9 55 2-56 94-148 (280)
36 2r9r_B Paddle chimera voltage 98.9 3.6E-10 1.2E-14 94.7 3.9 58 2-59 376-433 (514)
37 3ukm_A Potassium channel subfa 98.9 3E-10 1E-14 87.5 3.1 56 2-57 202-264 (280)
38 1xl4_A Inward rectifier potass 98.9 4.3E-10 1.5E-14 87.9 4.0 54 2-55 83-136 (301)
39 1o7f_A CAMP-dependent RAP1 gua 98.9 1.8E-09 6.1E-14 89.3 7.8 84 111-194 27-117 (469)
40 4ev0_A Transcription regulator 98.9 2E-09 6.8E-14 79.7 6.7 67 128-194 1-72 (216)
41 3e97_A Transcriptional regulat 98.9 1.6E-09 5.4E-14 81.2 6.0 70 125-194 5-79 (231)
42 3fx3_A Cyclic nucleotide-bindi 98.9 1.9E-09 6.6E-14 81.0 6.3 73 122-194 7-84 (237)
43 3dv8_A Transcriptional regulat 98.9 2.3E-09 7.7E-14 79.7 6.6 69 126-194 3-76 (220)
44 3d0s_A Transcriptional regulat 98.9 2.3E-09 7.9E-14 80.1 6.7 70 125-194 5-79 (227)
45 4f7z_A RAP guanine nucleotide 98.9 2.4E-09 8.2E-14 96.3 7.8 88 106-194 23-117 (999)
46 3um7_A Potassium channel subfa 98.9 2.5E-10 8.4E-15 89.2 1.1 57 2-58 225-287 (309)
47 3dn7_A Cyclic nucleotide bindi 98.9 2.4E-09 8.2E-14 78.1 6.1 71 124-194 5-80 (194)
48 3dkw_A DNR protein; CRP-FNR, H 98.9 1.7E-09 5.8E-14 80.7 5.2 70 125-194 8-82 (227)
49 1o7f_A CAMP-dependent RAP1 gua 98.9 3.9E-09 1.3E-13 87.2 7.9 75 121-195 332-408 (469)
50 3tnp_B CAMP-dependent protein 98.9 2.2E-09 7.4E-14 87.9 6.1 77 118-194 137-217 (416)
51 3shr_A CGMP-dependent protein 98.9 4.7E-09 1.6E-13 81.7 7.1 74 122-195 153-232 (299)
52 1zyb_A Transcription regulator 98.8 6.7E-09 2.3E-13 78.0 7.5 72 123-194 15-93 (232)
53 1lnq_A MTHK channels, potassiu 98.8 1.8E-10 6.1E-15 91.6 -2.0 58 2-59 46-103 (336)
54 2qcs_B CAMP-dependent protein 98.8 1.6E-08 5.6E-13 78.2 9.0 75 121-195 152-232 (291)
55 3iwz_A CAP-like, catabolite ac 98.8 6.8E-09 2.3E-13 77.6 6.4 70 125-194 10-84 (230)
56 3cf6_E RAP guanine nucleotide 98.8 1.4E-08 4.8E-13 88.0 8.5 89 105-194 12-102 (694)
57 4gx0_A TRKA domain protein; me 98.8 5.3E-09 1.8E-13 88.7 5.3 54 2-55 52-106 (565)
58 4din_B CAMP-dependent protein 98.8 1.8E-08 6E-13 81.5 8.0 74 122-195 244-323 (381)
59 2gau_A Transcriptional regulat 98.8 9.8E-09 3.4E-13 76.9 5.6 65 130-194 14-83 (232)
60 2fmy_A COOA, carbon monoxide o 98.7 5.6E-09 1.9E-13 77.7 3.7 70 125-194 3-76 (220)
61 1ft9_A Carbon monoxide oxidati 98.7 6.8E-09 2.3E-13 77.4 2.5 68 127-194 1-72 (222)
62 3tnp_B CAMP-dependent protein 98.6 4.6E-08 1.6E-12 80.0 7.0 72 124-195 265-347 (416)
63 4f7z_A RAP guanine nucleotide 98.6 6.6E-08 2.3E-12 87.0 8.4 74 122-195 333-408 (999)
64 3ryp_A Catabolite gene activat 98.6 1.3E-07 4.5E-12 69.5 6.7 63 132-194 2-69 (210)
65 3sya_A G protein-activated inw 98.5 7.8E-08 2.7E-12 76.0 4.8 57 2-58 92-150 (340)
66 3kcc_A Catabolite gene activat 98.4 5.7E-07 1.9E-11 68.7 6.5 60 135-194 55-119 (260)
67 3spc_A Inward-rectifier K+ cha 98.4 3.3E-07 1.1E-11 72.6 4.6 55 2-56 95-151 (343)
68 3e6c_C CPRK, cyclic nucleotide 98.3 3.9E-07 1.3E-11 69.0 4.6 69 126-194 9-82 (250)
69 1o5l_A Transcriptional regulat 98.3 5.5E-07 1.9E-11 66.6 3.8 64 131-194 4-72 (213)
70 2bgc_A PRFA; bacterial infecti 98.0 8.7E-06 3E-10 61.0 5.9 47 136-182 3-51 (238)
71 3la7_A Global nitrogen regulat 97.9 1.6E-05 5.5E-10 59.8 6.0 56 139-194 30-93 (243)
72 3rvy_A ION transport protein; 97.8 7.6E-06 2.6E-10 63.4 1.7 57 2-58 181-243 (285)
73 3kg2_A Glutamate receptor 2; I 91.6 0.23 7.7E-06 43.5 5.2 52 4-56 566-617 (823)
74 3lwc_A Uncharacterized protein 84.5 2.7 9.1E-05 27.5 5.7 43 150-194 43-85 (119)
75 3es4_A Uncharacterized protein 84.2 1.2 4E-05 29.4 3.7 39 155-194 50-88 (116)
76 1o5u_A Novel thermotoga mariti 83.1 4.9 0.00017 25.4 6.4 42 151-194 35-76 (101)
77 3h8u_A Uncharacterized conserv 81.9 2.2 7.5E-05 27.7 4.6 47 148-194 40-87 (125)
78 3fjs_A Uncharacterized protein 81.5 3.7 0.00013 26.4 5.5 45 148-193 37-81 (114)
79 3bcw_A Uncharacterized protein 81.3 1.6 5.6E-05 28.8 3.7 41 153-194 55-95 (123)
80 2fqp_A Hypothetical protein BP 81.2 1.5 5.2E-05 27.3 3.4 45 150-194 21-67 (97)
81 3rns_A Cupin 2 conserved barre 78.8 4 0.00014 29.8 5.5 46 148-194 38-83 (227)
82 4dxw_A Navrh, ION transport pr 77.6 1.2 4.2E-05 32.6 2.3 49 3-51 167-220 (229)
83 2ozj_A Cupin 2, conserved barr 75.7 5.1 0.00017 25.4 4.8 42 152-194 43-84 (114)
84 3es1_A Cupin 2, conserved barr 75.4 2.7 9.2E-05 29.7 3.5 47 148-194 80-126 (172)
85 4b29_A Dimethylsulfoniopropion 74.9 4.9 0.00017 29.4 4.8 41 154-194 139-179 (217)
86 4e2g_A Cupin 2 conserved barre 73.5 7.8 0.00027 24.9 5.3 45 148-193 42-86 (126)
87 2pfw_A Cupin 2, conserved barr 73.1 8.8 0.0003 24.2 5.5 45 149-194 36-80 (116)
88 2pyt_A Ethanolamine utilizatio 73.1 5.7 0.0002 26.5 4.6 41 151-194 61-101 (133)
89 1yhf_A Hypothetical protein SP 72.2 10 0.00036 23.8 5.7 45 149-194 42-86 (115)
90 2bnm_A Epoxidase; oxidoreducta 69.8 5.3 0.00018 28.2 4.1 43 152-194 122-170 (198)
91 1v70_A Probable antibiotics sy 68.7 13 0.00046 22.5 5.5 44 149-193 30-74 (105)
92 2b8m_A Hypothetical protein MJ 67.7 6.8 0.00023 24.9 3.9 43 152-194 32-74 (117)
93 3myx_A Uncharacterized protein 66.6 7.2 0.00025 29.0 4.2 28 167-194 186-213 (238)
94 2gu9_A Tetracenomycin polyketi 66.0 14 0.00047 22.9 5.2 44 149-193 23-69 (113)
95 2i45_A Hypothetical protein; n 65.0 3.9 0.00013 25.6 2.3 41 154-194 35-75 (107)
96 4e2q_A Ureidoglycine aminohydr 64.3 4.2 0.00014 30.8 2.7 46 149-194 72-117 (266)
97 2xp1_A SPT6; transcription, IW 64.2 14 0.00047 26.1 5.2 41 129-175 12-52 (178)
98 2f4p_A Hypothetical protein TM 63.8 12 0.0004 25.2 4.7 44 150-193 51-94 (147)
99 3h7j_A Bacilysin biosynthesis 63.7 16 0.00054 26.9 5.7 46 148-194 35-80 (243)
100 4axo_A EUTQ, ethanolamine util 63.4 12 0.00042 25.6 4.7 28 166-194 83-110 (151)
101 3ibm_A Cupin 2, conserved barr 63.2 13 0.00045 25.7 4.9 44 149-193 58-101 (167)
102 2q30_A Uncharacterized protein 62.6 14 0.00049 22.8 4.7 45 150-194 36-82 (110)
103 3rns_A Cupin 2 conserved barre 61.6 18 0.00061 26.3 5.7 45 148-193 154-198 (227)
104 3i7d_A Sugar phosphate isomera 60.6 11 0.00039 25.8 4.2 44 149-193 45-90 (163)
105 1dgw_A Canavalin; duplicated s 59.9 10 0.00035 26.5 3.9 47 148-194 42-91 (178)
106 1sfn_A Conserved hypothetical 59.7 12 0.00041 27.6 4.5 48 146-194 164-212 (246)
107 2vpv_A Protein MIF2, MIF2P; nu 59.0 10 0.00035 26.5 3.7 29 165-194 108-136 (166)
108 3d0j_A Uncharacterized protein 58.1 13 0.00045 25.2 3.9 23 161-183 44-66 (140)
109 3kgz_A Cupin 2 conserved barre 58.0 14 0.00048 25.2 4.3 44 150-194 47-90 (156)
110 3bu7_A Gentisate 1,2-dioxygena 56.3 7.3 0.00025 31.3 2.9 49 146-194 120-170 (394)
111 1lr5_A Auxin binding protein 1 55.8 15 0.00052 24.9 4.2 46 149-194 43-96 (163)
112 3jzv_A Uncharacterized protein 55.8 14 0.00048 25.6 4.0 45 149-194 55-99 (166)
113 2o1q_A Putative acetyl/propion 55.3 7.5 0.00026 26.3 2.4 33 148-180 45-77 (145)
114 3l2h_A Putative sugar phosphat 54.7 15 0.0005 24.9 4.0 45 149-194 48-94 (162)
115 2o8q_A Hypothetical protein; c 54.7 22 0.00076 23.0 4.8 39 156-194 52-91 (134)
116 2opk_A Hypothetical protein; p 53.4 12 0.00042 23.8 3.2 30 165-194 51-81 (112)
117 3myx_A Uncharacterized protein 52.6 20 0.00067 26.6 4.5 28 166-194 64-91 (238)
118 1vj2_A Novel manganese-contain 52.1 22 0.00076 22.9 4.4 43 150-193 51-93 (126)
119 1o4t_A Putative oxalate decarb 51.0 35 0.0012 22.2 5.3 43 150-193 60-103 (133)
120 4i4a_A Similar to unknown prot 49.5 30 0.001 22.0 4.8 42 151-193 38-79 (128)
121 2rnn_A E3 SUMO-protein ligase 48.3 17 0.0006 23.6 3.2 29 66-94 40-73 (114)
122 1y9q_A Transcriptional regulat 48.1 37 0.0013 23.6 5.3 43 151-194 108-152 (192)
123 4e2q_A Ureidoglycine aminohydr 47.0 23 0.00078 26.7 4.2 50 144-194 183-233 (266)
124 3mhs_B Protein SUS1; multi-pro 46.4 31 0.0011 21.6 4.1 57 64-124 22-86 (96)
125 1sfn_A Conserved hypothetical 44.9 30 0.001 25.5 4.5 42 150-194 53-94 (246)
126 2do1_A Nuclear protein HCC-1; 44.6 16 0.00055 20.4 2.2 28 67-94 14-46 (55)
127 2kvu_A MKL/myocardin-like prot 44.0 23 0.00077 21.2 3.0 28 67-94 30-62 (75)
128 2kwv_A RAD30 homolog B, DNA po 43.3 11 0.00036 20.2 1.3 18 104-121 17-34 (48)
129 1y3t_A Hypothetical protein YX 42.5 37 0.0013 25.9 4.9 44 150-194 49-93 (337)
130 2lh0_A Histone chaperone RTT10 42.1 17 0.00057 21.4 2.1 16 107-122 8-23 (70)
131 1sq4_A GLXB, glyoxylate-induce 42.0 34 0.0011 25.8 4.5 48 146-194 190-238 (278)
132 3lag_A Uncharacterized protein 41.9 7.5 0.00026 24.3 0.7 38 149-186 19-57 (98)
133 3h7j_A Bacilysin biosynthesis 41.8 35 0.0012 24.9 4.5 43 151-194 149-192 (243)
134 1fi2_A Oxalate oxidase, germin 41.3 48 0.0017 23.4 5.1 47 148-194 73-127 (201)
135 2oa2_A BH2720 protein; 1017534 41.2 40 0.0014 22.3 4.4 45 150-194 46-96 (148)
136 1uij_A Beta subunit of beta co 41.2 26 0.0009 28.2 3.9 48 147-194 49-99 (416)
137 1juh_A Quercetin 2,3-dioxygena 40.7 31 0.0011 27.0 4.2 38 157-194 262-299 (350)
138 3ht1_A REMF protein; cupin fol 40.0 26 0.00089 22.8 3.3 41 153-194 45-87 (145)
139 3cew_A Uncharacterized cupin p 39.8 49 0.0017 21.0 4.6 43 150-193 29-73 (125)
140 3or8_A Transcription elongatio 39.3 47 0.0016 23.8 4.6 38 130-172 7-45 (197)
141 1zvf_A 3-hydroxyanthranilate 3 39.2 32 0.0011 24.2 3.6 21 164-184 51-71 (176)
142 2vqa_A SLL1358 protein, MNCA; 38.9 59 0.002 25.1 5.6 46 149-194 54-104 (361)
143 2q1z_B Anti-sigma factor CHRR, 38.9 17 0.00057 25.9 2.2 32 148-179 126-157 (195)
144 2vqa_A SLL1358 protein, MNCA; 38.3 60 0.002 25.1 5.6 46 149-194 236-286 (361)
145 1sef_A Conserved hypothetical 38.1 56 0.0019 24.3 5.2 45 149-194 184-229 (274)
146 1sq4_A GLXB, glyoxylate-induce 37.7 20 0.0007 27.0 2.7 44 150-194 71-116 (278)
147 3nw4_A Gentisate 1,2-dioxygena 37.5 28 0.00096 27.6 3.5 47 148-194 104-150 (368)
148 2d40_A Z3393, putative gentisa 35.4 27 0.00092 27.4 3.1 46 149-194 102-147 (354)
149 2cav_A Protein (canavalin); vi 35.2 39 0.0013 27.5 4.1 48 147-194 86-136 (445)
150 1j58_A YVRK protein; cupin, de 33.4 72 0.0025 24.9 5.4 46 149-194 81-130 (385)
151 1rc6_A Hypothetical protein YL 33.4 44 0.0015 24.6 3.9 45 149-194 181-226 (261)
152 1zrj_A E1B-55KDA-associated pr 32.4 45 0.0015 18.1 2.8 26 67-92 14-44 (50)
153 3bu7_A Gentisate 1,2-dioxygena 30.4 40 0.0014 27.0 3.3 43 150-193 297-339 (394)
154 1j58_A YVRK protein; cupin, de 30.1 81 0.0028 24.6 5.1 46 149-194 259-309 (385)
155 1yfu_A 3-hydroxyanthranilate-3 29.9 49 0.0017 23.2 3.3 28 166-193 54-84 (174)
156 3d82_A Cupin 2, conserved barr 29.7 70 0.0024 19.0 3.9 26 167-193 50-75 (102)
157 1rc6_A Hypothetical protein YL 29.6 47 0.0016 24.5 3.5 43 151-194 63-107 (261)
158 1ais_B TFB TFIIB, protein (tra 27.7 1.5E+02 0.0053 20.5 8.6 58 60-117 5-74 (200)
159 2ea7_A 7S globulin-1; beta bar 27.7 67 0.0023 26.0 4.3 48 147-194 61-111 (434)
160 1x82_A Glucose-6-phosphate iso 26.9 61 0.0021 22.7 3.5 45 150-194 70-127 (190)
161 3jv1_A P22 protein; MAM33 fami 26.1 1.2E+02 0.0042 21.1 5.0 30 67-96 137-166 (182)
162 1v54_M VIIIB, IX, cytochrome C 25.8 83 0.0029 16.8 4.1 29 22-50 8-37 (46)
163 2kvs_A Uncharacterized protein 25.7 1.1E+02 0.0038 18.4 3.9 28 68-95 42-69 (80)
164 1sef_A Conserved hypothetical 25.0 54 0.0018 24.4 3.1 43 151-194 66-110 (274)
165 1yqf_A Hypothetical protein LM 24.3 1.3E+02 0.0046 21.4 5.0 28 68-95 159-186 (203)
166 2db7_A Hairy/enhancer-OF-split 24.1 1.1E+02 0.0037 17.5 4.1 35 62-96 22-59 (64)
167 2efe_A Similarity to vacuolar 23.8 60 0.0021 24.2 3.1 16 81-96 45-60 (267)
168 3arc_T Photosystem II reaction 23.0 66 0.0023 15.7 2.1 14 33-46 9-22 (32)
169 4b8b_A General negative regula 22.8 2.7E+02 0.0091 23.7 6.9 66 79-146 442-513 (603)
170 1h1j_S THO1 protein; SAP domai 22.8 1E+02 0.0035 16.7 3.6 27 67-93 9-40 (51)
171 4dn7_A ABC transporter, ATP-bi 22.5 1.7E+02 0.0057 23.7 5.6 41 72-124 381-423 (429)
172 2phl_A Phaseolin; plant SEED s 22.4 1.1E+02 0.0036 24.5 4.4 48 147-194 52-102 (397)
173 1p32_A Mitochondrial matrix pr 22.0 1.6E+02 0.0054 21.0 5.0 29 68-96 163-191 (209)
174 3mmi_A Myosin-4; globular tail 21.2 3.1E+02 0.011 21.8 8.5 90 60-154 242-337 (386)
175 3rfa_A Ribosomal RNA large sub 20.6 2.2E+02 0.0076 22.7 6.0 51 67-122 24-74 (404)
176 3tvk_A DGC, diguanylate cyclas 20.2 1.2E+02 0.0041 20.9 3.9 36 138-176 56-91 (179)
No 1
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.96 E-value=7.9e-30 Score=191.24 Aligned_cols=143 Identities=34% Similarity=0.726 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcCCCCHhHHHhhCCHhHHHHHHHHHhHHHhhcC
Q psy17883 52 TIIQQMTSATAKYHDMLNNVREFMKLHEVPKALSERVMDYVVSTWAMTKGLDTDKVLNYCPKDMKADICVHLNRKVFNEH 131 (195)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~~il~~lp~~L~~~i~~~~~~~~l~~~ 131 (195)
.++++++.++.+|++++..+++||+.+++|+.|+.||++||++.|+.+++.+++++++.||++||.++..+++..++ ++
T Consensus 2 ~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~~ 80 (212)
T 3ukn_A 2 AMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-QL 80 (212)
T ss_dssp ----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-GS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-hc
Confidence 56788899999999999999999999999999999999999999998898899999999999999999999998777 89
Q ss_pred CccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEeCCcEEEEeecccC
Q psy17883 132 PAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILDLIWY 195 (195)
Q Consensus 132 ~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~~ 195 (195)
|+|+++++++++.++..++...|.|||+|+++||.++++|||.+|.|+++.++..+..++.|.+
T Consensus 81 ~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~ 144 (212)
T 3ukn_A 81 PLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKDNTVLAILGKGDL 144 (212)
T ss_dssp GGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEESSSCEEEEECTTCE
T ss_pred HHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEECCeEEEEecCCCC
Confidence 9999999999999999999999999999999999999999999999999998888888888863
No 2
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.96 E-value=2.2e-28 Score=182.11 Aligned_cols=140 Identities=21% Similarity=0.371 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcCCCCHhHHHhhCCHhHHHHHHHHHhHHHhhcCCcc
Q psy17883 55 QQMTSATAKYHDMLNNVREFMKLHEVPKALSERVMDYVVSTWAMTKGLDTDKVLNYCPKDMKADICVHLNRKVFNEHPAF 134 (195)
Q Consensus 55 ~~~~~~~~~~~~~~~~l~~~l~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~~il~~lp~~L~~~i~~~~~~~~l~~~~~f 134 (195)
++++.+..+|++++..+++||+.+++|+.++.||++|+++.|+ +++.+++++++.||++||.++..+.+.++++++|+|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f 80 (202)
T 3bpz_A 2 SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREKIVNFNCRKLVASMPLF 80 (202)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCch
Confidence 3567889999999999999999999999999999999999996 577899999999999999999999999999999999
Q ss_pred ccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEeCCcEEEEeecccC
Q psy17883 135 RLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILDLIWY 195 (195)
Q Consensus 135 ~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~~ 195 (195)
++++++++..++..++...|.||++|+++||.++++|||.+|.|+++.+++...+++.|.+
T Consensus 81 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~g~~~~l~~G~~ 141 (202)
T 3bpz_A 81 ANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEMKLSDGSY 141 (202)
T ss_dssp HTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEECTTSCCEEEETTCE
T ss_pred hcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEECCCeEEEEcCCCE
Confidence 9999999999999999999999999999999999999999999999988777778887753
No 3
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.96 E-value=4.9e-28 Score=179.61 Aligned_cols=139 Identities=21% Similarity=0.380 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcCCCCHhHHHhhCCHhHHHHHHHHHhHHHhhcCCccc
Q psy17883 56 QMTSATAKYHDMLNNVREFMKLHEVPKALSERVMDYVVSTWAMTKGLDTDKVLNYCPKDMKADICVHLNRKVFNEHPAFR 135 (195)
Q Consensus 56 ~~~~~~~~~~~~~~~l~~~l~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~~il~~lp~~L~~~i~~~~~~~~l~~~~~f~ 135 (195)
+++.+..+|++++..+++||+.+++|+.++.||++||++.|+ +++.+++++++.||++||.++..+.+.++++++|+|+
T Consensus 2 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~ 80 (198)
T 2ptm_A 2 AMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREVSESIRQDVANYNCRDLVASVPFFV 80 (198)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchh
Confidence 467889999999999999999999999999999999999996 5778899999999999999999999999999999999
Q ss_pred cCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEeCCc-EEEEeecccC
Q psy17883 136 LASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDE-VVAILDLIWY 195 (195)
Q Consensus 136 ~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~-~~~~l~~~~~ 195 (195)
+++++++..++..++...|.|||+|+++||.++++|||.+|.|+++.+++ .+..++.|.+
T Consensus 81 ~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~~~g~~~~~l~~G~~ 141 (198)
T 2ptm_A 81 GADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSDGVIATSLSDGSY 141 (198)
T ss_dssp TCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEECTTSCEEEEECTTCE
T ss_pred cCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEecCCeEEEEecCCCE
Confidence 99999999999999999999999999999999999999999999996444 5777877753
No 4
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.88 E-value=1.5e-23 Score=168.61 Aligned_cols=133 Identities=17% Similarity=0.289 Sum_probs=54.1
Q ss_pred ceehhhhhhhheeeeecCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q psy17883 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQMTSATAKYHDMLNNVREFMKLHEVP 81 (195)
Q Consensus 2 Y~~sly~~~~tl~t~gygdi~p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~ 81 (195)
|..|+||++.|+||+||||+.|.|..+++++++++++|+.++++.++.+++.+.+...+
T Consensus 162 ~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~--------------------- 220 (355)
T 3beh_A 162 IPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVRR--------------------- 220 (355)
T ss_dssp HHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 67899999999999999999999999999999999999999999999998766542110
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHhHHHhhCCHhHHHHHHHHHhHHHhhcCCccccCChHHHHHHhhhcccccccCCceeE
Q psy17883 82 KALSERVMDYVVSTWAMTKGLDTDKVLNYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLY 161 (195)
Q Consensus 82 ~~l~~rv~~y~~~~~~~~~~~~~~~il~~lp~~L~~~i~~~~~~~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~ 161 (195)
+++. ...+.++++|+|++++++.+++++..++...+.|||.|+
T Consensus 221 -------~~~~------------------------------~~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~ 263 (355)
T 3beh_A 221 -------GDFV------------------------------RNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVIC 263 (355)
T ss_dssp -------HHHH------------------------------HHHC-----------------------------------
T ss_pred -------Hhhc------------------------------ccchhhhcccccccCCHHHHHHHHHhceEEEECCCCEEE
Confidence 0000 034788999999999999999999999999999999999
Q ss_pred ecCCCCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 162 HTGESIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 162 ~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
++||.++++|+|.+|.|++...+ ...++.|.
T Consensus 264 ~~G~~~~~ly~I~~G~v~v~~~~--~~~l~~G~ 294 (355)
T 3beh_A 264 RIGEPGDRMFFVVEGSVSVATPN--PVELGPGA 294 (355)
T ss_dssp ---------------------------------
T ss_pred eCCCcCceEEEEEeeEEEEEECC--eeEECCCC
Confidence 99999999999999999998765 34555554
No 5
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.67 E-value=7.9e-18 Score=117.47 Aligned_cols=92 Identities=16% Similarity=0.290 Sum_probs=54.8
Q ss_pred ceehhhhhhhheeeeecCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q psy17883 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQMTSATAKYHDMLNNVREFMKLHEVP 81 (195)
Q Consensus 2 Y~~sly~~~~tl~t~gygdi~p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~ 81 (195)
|..|+||++.|+||+||||++|.|..+++++++++++|+.+++++++.+++.+...+......++..+..+...+..+++
T Consensus 44 ~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (137)
T 4h33_A 44 YPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDLT 123 (137)
T ss_dssp HHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC---------------------
T ss_pred HHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 77899999999999999999999999999999999999999999999999888765444333333222222233334555
Q ss_pred HHHHHHHHHHHH
Q psy17883 82 KALSERVMDYVV 93 (195)
Q Consensus 82 ~~l~~rv~~y~~ 93 (195)
++....++++++
T Consensus 124 ~~~i~~l~~~l~ 135 (137)
T 4h33_A 124 KEEIAVVEQFLT 135 (137)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHh
Confidence 555555555543
No 6
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.64 E-value=6.6e-16 Score=109.80 Aligned_cols=91 Identities=79% Similarity=1.264 Sum_probs=78.5
Q ss_pred HhHHHhhCCHhHHHHHHHHHhHHHhhcCCccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEeC
Q psy17883 104 TDKVLNYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQD 183 (195)
Q Consensus 104 ~~~il~~lp~~L~~~i~~~~~~~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~ 183 (195)
.+++++.||+++|.++..+++.+.++++|+|++++++.++.++..++...|.+|+.|+++||..+.+|||.+|.|++..+
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~ 84 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQD 84 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEEC
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CcEEEEeeccc
Q psy17883 184 DEVVAILDLIW 194 (195)
Q Consensus 184 ~~~~~~l~~~~ 194 (195)
+..+..++.|.
T Consensus 85 ~~~~~~~~~G~ 95 (160)
T 4f8a_A 85 DEVVAILGKGD 95 (160)
T ss_dssp TEEEEEEETTC
T ss_pred CEEEEEecCCC
Confidence 88888888875
No 7
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.64 E-value=3.4e-16 Score=110.71 Aligned_cols=86 Identities=26% Similarity=0.378 Sum_probs=69.8
Q ss_pred ceehhhhhhhheeeeecCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHH------HHHH----HHHHHHHHHHHHHHH
Q psy17883 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTT------IIQQ----MTSATAKYHDMLNNV 71 (195)
Q Consensus 2 Y~~sly~~~~tl~t~gygdi~p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~------~~~~----~~~~~~~~~~~~~~l 71 (195)
|..|+||++.|+||+||||+.|.|..+++++++++++|+.++++.++.++. +... .+....+..++++.+
T Consensus 53 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~i 132 (148)
T 3vou_A 53 PLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAI 132 (148)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999886 3332 234455566788999
Q ss_pred HHHHhhCCCCHHHHHH
Q psy17883 72 REFMKLHEVPKALSER 87 (195)
Q Consensus 72 ~~~l~~~~l~~~l~~r 87 (195)
++++++++.|++|+.|
T Consensus 133 ~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 133 EKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHTTC------
T ss_pred HHHHHhcCCCcCCCCC
Confidence 9999999999998865
No 8
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.51 E-value=1.4e-14 Score=101.39 Aligned_cols=59 Identities=17% Similarity=0.343 Sum_probs=54.5
Q ss_pred ceehhhhhhhheeeeecCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17883 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQMTSA 60 (195)
Q Consensus 2 Y~~sly~~~~tl~t~gygdi~p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~~~~~ 60 (195)
|..|+||++.|+||+||||+.|.|..+++++++++++|+.+++++++.++..+......
T Consensus 41 ~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~ 99 (139)
T 3eff_K 41 YPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQE 99 (139)
T ss_dssp HHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHHH
T ss_pred HHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999888654443
No 9
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.47 E-value=1.1e-13 Score=96.29 Aligned_cols=85 Identities=8% Similarity=0.034 Sum_probs=80.1
Q ss_pred hCCHhHHHHHHHHHhHHHhhcCCccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEeCCcEEEE
Q psy17883 110 YCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAI 189 (195)
Q Consensus 110 ~lp~~L~~~i~~~~~~~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~~~~ 189 (195)
++|..+|.+...+...++++++|+|++++++.++.++..++...|.+|++|+++||..+.+|||.+|.|++..++..+..
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~g~~~~~ 86 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEGVKLCT 86 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEETTEEEEE
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEECCEEEEE
Confidence 57888888888889999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred eeccc
Q psy17883 190 LDLIW 194 (195)
Q Consensus 190 l~~~~ 194 (195)
++.|.
T Consensus 87 ~~~G~ 91 (139)
T 3ocp_A 87 MGPGK 91 (139)
T ss_dssp ECTTC
T ss_pred eCCCC
Confidence 88775
No 10
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.43 E-value=9.9e-14 Score=94.77 Aligned_cols=58 Identities=16% Similarity=0.294 Sum_probs=54.7
Q ss_pred ceehhhhhhhheeeeecCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17883 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQMTS 59 (195)
Q Consensus 2 Y~~sly~~~~tl~t~gygdi~p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~~~~ 59 (195)
|..|+||++.|+||+||||+.|.|..+++++++++++|+.++++.++.+++.+.+...
T Consensus 62 ~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~ 119 (122)
T 2ih3_C 62 YPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119 (122)
T ss_dssp HHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999999987553
No 11
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.43 E-value=4.5e-14 Score=100.18 Aligned_cols=59 Identities=22% Similarity=0.398 Sum_probs=54.7
Q ss_pred ceehhhhhhhheeeeecCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17883 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQMTSA 60 (195)
Q Consensus 2 Y~~sly~~~~tl~t~gygdi~p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~~~~~ 60 (195)
|..|+||++.|+||+||||+.|.|..+++++++++++|+.++++.++.+++.+.+....
T Consensus 85 ~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~ 143 (155)
T 2a9h_A 85 YPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQE 143 (155)
T ss_dssp HHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC-
T ss_pred ccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999998875543
No 12
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.42 E-value=5.1e-14 Score=93.40 Aligned_cols=57 Identities=18% Similarity=0.312 Sum_probs=53.8
Q ss_pred ceehhhhhhhheeeeecCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17883 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQMT 58 (195)
Q Consensus 2 Y~~sly~~~~tl~t~gygdi~p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~~~ 58 (195)
|..|+||++.|++|+||||+.|.|..+++++++++++|+.++++.++.+...+.+..
T Consensus 41 ~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~ 97 (103)
T 2k1e_A 41 YPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRRE 97 (103)
T ss_dssp GGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHH
T ss_pred HHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999999999999998887644
No 13
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.40 E-value=2.6e-14 Score=102.87 Aligned_cols=60 Identities=17% Similarity=0.340 Sum_probs=55.4
Q ss_pred ceehhhhhhhheeeeecCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17883 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQMTSAT 61 (195)
Q Consensus 2 Y~~sly~~~~tl~t~gygdi~p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~~~~~~ 61 (195)
|..|+||++.|+||+||||+.|.|..+++++++++++|+.+++++++.+++.+.......
T Consensus 68 ~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~~ 127 (166)
T 3pjs_K 68 YPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQ 127 (166)
T ss_dssp TTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHHH
T ss_pred HHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778999999999999999999999999999999999999999999999999888655443
No 14
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.39 E-value=1.3e-13 Score=92.95 Aligned_cols=57 Identities=33% Similarity=0.472 Sum_probs=52.2
Q ss_pred ceehhhhhhhheeeeecCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17883 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQMT 58 (195)
Q Consensus 2 Y~~sly~~~~tl~t~gygdi~p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~~~ 58 (195)
|..|+||++.|++|+||||+.|.|..+++++++++++|+.++++.++.+...+...+
T Consensus 50 ~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~ 106 (114)
T 2q67_A 50 PIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPS 106 (114)
T ss_dssp HHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999988875543
No 15
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.37 E-value=4.8e-13 Score=87.60 Aligned_cols=55 Identities=33% Similarity=0.530 Sum_probs=52.5
Q ss_pred ceehhhhhhhheeeeecCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17883 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQ 56 (195)
Q Consensus 2 Y~~sly~~~~tl~t~gygdi~p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~ 56 (195)
|..|+||++.|++|+||||+.|.|..+++++++++++|+.++++.++.++..++.
T Consensus 33 ~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~ 87 (97)
T 3ouf_A 33 PIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL 87 (97)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 6789999999999999999999999999999999999999999999999988765
No 16
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.36 E-value=4.9e-13 Score=84.86 Aligned_cols=53 Identities=19% Similarity=0.461 Sum_probs=50.4
Q ss_pred ceehhhhhhhheeeeecCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17883 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTII 54 (195)
Q Consensus 2 Y~~sly~~~~tl~t~gygdi~p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~ 54 (195)
|..|+||++.|++|+||||+.|.|..+++++++.+++|+.++++.++.+++.+
T Consensus 29 ~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 29 WTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999998764
No 17
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.32 E-value=2.5e-12 Score=100.46 Aligned_cols=89 Identities=8% Similarity=0.043 Sum_probs=82.2
Q ss_pred HHHhhCCHhHHHHHHHHHhHHHhhcCCccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEeCCc
Q psy17883 106 KVLNYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDE 185 (195)
Q Consensus 106 ~il~~lp~~L~~~i~~~~~~~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~ 185 (195)
....++|+..|.+...+...++++++++|++++++.++.++..++...|.+|++|+++||.++.+|||.+|.|++..++.
T Consensus 19 ~~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~g~ 98 (299)
T 3shr_A 19 GSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEGV 98 (299)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEETTE
T ss_pred cccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEECCE
Confidence 45567999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred EEEEeeccc
Q psy17883 186 VVAILDLIW 194 (195)
Q Consensus 186 ~~~~l~~~~ 194 (195)
.+..+..|+
T Consensus 99 ~~~~~~~G~ 107 (299)
T 3shr_A 99 KLCTMGPGK 107 (299)
T ss_dssp EEEEECTTC
T ss_pred EEEEeCCCC
Confidence 888888876
No 18
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.30 E-value=1.2e-12 Score=90.44 Aligned_cols=82 Identities=20% Similarity=0.250 Sum_probs=70.1
Q ss_pred HhHHHHHHHHHhHHHhhcCCccccCChHHHHHHhhhccccccc-CCceeEecCCCCCeEEEEEeeeEEEEeCCcEEEEee
Q psy17883 113 KDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSA-PGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILD 191 (195)
Q Consensus 113 ~~L~~~i~~~~~~~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~-~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~ 191 (195)
|+.|.+-......++++++++|.++++..++.++..++...|. +|++|+++||..+.+|||.+|.|++..+++....++
T Consensus 3 p~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~g~~~~l~ 82 (134)
T 2d93_A 3 SGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISHPDGKVENLF 82 (134)
T ss_dssp CSCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEECSSSCEEEEC
T ss_pred hhhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEcCCCcEEEec
Confidence 3444444444556789999999999999999999999999999 999999999999999999999999998766667777
Q ss_pred ccc
Q psy17883 192 LIW 194 (195)
Q Consensus 192 ~~~ 194 (195)
.|.
T Consensus 83 ~G~ 85 (134)
T 2d93_A 83 MGN 85 (134)
T ss_dssp TTC
T ss_pred CCC
Confidence 765
No 19
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.26 E-value=1.9e-11 Score=86.26 Aligned_cols=73 Identities=14% Similarity=0.111 Sum_probs=68.1
Q ss_pred HHhHHHhhcCCccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 122 HLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 122 ~~~~~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
....++++++|+|++++++.++.++..++...|.+|++|+++||..+.+|||.+|.|+++.++..+..++.|.
T Consensus 34 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~~~~~~~G~ 106 (154)
T 3pna_A 34 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGEGG 106 (154)
T ss_dssp HHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEETTEEEEEECTTC
T ss_pred HHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEECCEEEEEecCCC
Confidence 4456789999999999999999999999999999999999999999999999999999999888888888775
No 20
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=99.22 E-value=2e-11 Score=95.30 Aligned_cols=75 Identities=23% Similarity=0.447 Sum_probs=60.3
Q ss_pred ceehhhhhhhheeeeecCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q psy17883 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQMTSATAKYHDMLNNVREFMKLHEVP 81 (195)
Q Consensus 2 Y~~sly~~~~tl~t~gygdi~p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~ 81 (195)
|..|+||+++|+||+||||+.|.|..+++++++++++|+.+++++++.++..+.... ++....++..+.+.+.+
T Consensus 116 ~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~~------~~~i~~le~~~~~~~~~ 189 (309)
T 3um7_A 116 LGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSSL------RHGIGHIEAIFLKWHVP 189 (309)
T ss_dssp HHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHTHHHHHHHTTTC--
T ss_pred hhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hhhHHHHHHHHhccccc
Confidence 667999999999999999999999999999999999999999999999998886533 23333444455555554
Q ss_pred H
Q psy17883 82 K 82 (195)
Q Consensus 82 ~ 82 (195)
+
T Consensus 190 ~ 190 (309)
T 3um7_A 190 P 190 (309)
T ss_dssp C
T ss_pred h
Confidence 4
No 21
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.19 E-value=4e-11 Score=87.55 Aligned_cols=91 Identities=21% Similarity=0.178 Sum_probs=73.5
Q ss_pred HhHHHhhCCHhH----HHHHHHHHhHHHhhcCCccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEE
Q psy17883 104 TDKVLNYCPKDM----KADICVHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLE 179 (195)
Q Consensus 104 ~~~il~~lp~~L----~~~i~~~~~~~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~ 179 (195)
+....+.++|.+ +.+...+...+.++++|+|++++++.++.++..++.+.|.+|++|+++|+..+.+|+|.+|.|+
T Consensus 13 ~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~ 92 (187)
T 3gyd_A 13 ENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVN 92 (187)
T ss_dssp HHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEE
T ss_pred cceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEE
Confidence 344455555444 4444556667899999999999999999999999999999999999999999999999999999
Q ss_pred EEeC--Cc---EEEEeeccc
Q psy17883 180 VIQD--DE---VVAILDLIW 194 (195)
Q Consensus 180 v~~~--~~---~~~~l~~~~ 194 (195)
+... ++ .+..++.|.
T Consensus 93 v~~~~~~g~~~~~~~~~~G~ 112 (187)
T 3gyd_A 93 VIKDIPNKGIQTIAKVGAGA 112 (187)
T ss_dssp EEEEETTTEEEEEEEEETTC
T ss_pred EEEECCCCCeEEEEEccCCC
Confidence 9863 22 455666664
No 22
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.14 E-value=8.4e-11 Score=88.79 Aligned_cols=71 Identities=13% Similarity=0.119 Sum_probs=66.6
Q ss_pred hHHHhhcCCccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 124 NRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 124 ~~~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
..+.++++|+|++++++.++.++..++...|.+|++|+++||.++.+|+|.+|.|++..++..+..++.|.
T Consensus 5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~~~~~~~~~~~g~ 75 (246)
T 3of1_A 5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYVNDNKVNSSGPGS 75 (246)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEESTTSCCEEECTTC
T ss_pred HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEECCEEEEecCCCC
Confidence 45789999999999999999999999999999999999999999999999999999998888788888775
No 23
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.14 E-value=6.4e-11 Score=84.14 Aligned_cols=77 Identities=13% Similarity=0.112 Sum_probs=65.7
Q ss_pred HHHHHHhHHHhhcCCccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEeC-C---cEEEEeecc
Q psy17883 118 DICVHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQD-D---EVVAILDLI 193 (195)
Q Consensus 118 ~i~~~~~~~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~-~---~~~~~l~~~ 193 (195)
+-......++++++|+|++++++.++.++..++...|.+|++|+++||.++.+|||.+|.|++... + ..+..++.|
T Consensus 30 ~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~~G 109 (161)
T 3idb_B 30 DDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNR 109 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEEEEEEEEESC
T ss_pred HHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCeEEEEEcCCC
Confidence 344456678999999999999999999999999999999999999999999999999999999862 2 235556655
Q ss_pred c
Q psy17883 194 W 194 (195)
Q Consensus 194 ~ 194 (195)
.
T Consensus 110 ~ 110 (161)
T 3idb_B 110 G 110 (161)
T ss_dssp C
T ss_pred C
Confidence 4
No 24
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.13 E-value=9.5e-11 Score=80.84 Aligned_cols=69 Identities=20% Similarity=0.283 Sum_probs=61.8
Q ss_pred hHHHhhcCCccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 124 NRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 124 ~~~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
..+.++++|+|++++++.++.++..++...|.||++|+++||..+.+|||.+|.|+++..+ ...++.|.
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~--~~~~~~G~ 77 (138)
T 1vp6_A 9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN--PVELGPGA 77 (138)
T ss_dssp HHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS--CEEECTTC
T ss_pred HHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC--cceECCCC
Confidence 4478999999999999999999999999999999999999999999999999999998765 24555554
No 25
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.09 E-value=1e-10 Score=81.00 Aligned_cols=70 Identities=14% Similarity=0.199 Sum_probs=60.8
Q ss_pred HHHhhcCCccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEeC--Cc---E---EEEeeccc
Q psy17883 125 RKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQD--DE---V---VAILDLIW 194 (195)
Q Consensus 125 ~~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~--~~---~---~~~l~~~~ 194 (195)
.+.++++|+|++++++.++.++..++...|.+|++|+++||..+.+|+|.+|.|++... ++ . +..++.|.
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~ 82 (142)
T 3mdp_A 5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGA 82 (142)
T ss_dssp TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTC
T ss_pred HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCC
Confidence 46789999999999999999999999999999999999999999999999999999852 22 2 56666664
No 26
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.06 E-value=1.3e-10 Score=80.20 Aligned_cols=57 Identities=19% Similarity=0.346 Sum_probs=54.3
Q ss_pred HHhhcCCccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEe
Q psy17883 126 KVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQ 182 (195)
Q Consensus 126 ~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~ 182 (195)
++++++|+|++++++.++.++..++...|.+|++|+++||..+.+|||.+|.|++..
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~ 62 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVT 62 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEEC
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEE
Confidence 568899999999999999999999999999999999999999999999999999763
No 27
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.05 E-value=3.9e-10 Score=78.53 Aligned_cols=70 Identities=23% Similarity=0.369 Sum_probs=61.5
Q ss_pred HHHhhcCCccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEeC--Cc---EEEEeeccc
Q psy17883 125 RKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQD--DE---VVAILDLIW 194 (195)
Q Consensus 125 ~~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~--~~---~~~~l~~~~ 194 (195)
.++++++|+|.+++++.++.++..++...|.+|++|+++||+.+.+|||.+|.|+++.. ++ .+..++.|.
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~ 78 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSE 78 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTC
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcC
Confidence 46889999999999999999999999999999999999999999999999999999852 22 355666664
No 28
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.05 E-value=3.3e-10 Score=87.90 Aligned_cols=74 Identities=14% Similarity=0.117 Sum_probs=68.6
Q ss_pred HHHhHHHhhcCCccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 121 VHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 121 ~~~~~~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
.+...++++++|+|++++++.++.++..++...|.+|++|+++||.++.+|+|.+|.|++..++..+..++.|.
T Consensus 34 ~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~g~~~~~l~~G~ 107 (291)
T 2qcs_B 34 MAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGEGG 107 (291)
T ss_dssp HHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEETTEEEEEECTTC
T ss_pred HHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEECCeEEEEcCCCC
Confidence 45667899999999999999999999999999999999999999999999999999999999887788888775
No 29
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.05 E-value=5.1e-10 Score=78.44 Aligned_cols=71 Identities=13% Similarity=0.319 Sum_probs=61.3
Q ss_pred hHHHhhcCCccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEeC--Cc---EEEEeeccc
Q psy17883 124 NRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQD--DE---VVAILDLIW 194 (195)
Q Consensus 124 ~~~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~--~~---~~~~l~~~~ 194 (195)
..++++++++|++++++.++.++..++...|.+|++|+++||..+.+|||.+|.|+++.. ++ .+..++.|.
T Consensus 10 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~ 85 (154)
T 2z69_A 10 HQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERN 85 (154)
T ss_dssp HHHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTTE
T ss_pred HHHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCC
Confidence 347899999999999999999999999999999999999999999999999999999852 22 345565554
No 30
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.03 E-value=3.9e-10 Score=91.26 Aligned_cols=76 Identities=13% Similarity=0.105 Sum_probs=70.5
Q ss_pred HHHHhHHHhhcCCccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEeCCcEEEEeecccC
Q psy17883 120 CVHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILDLIWY 195 (195)
Q Consensus 120 ~~~~~~~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~~ 195 (195)
......+.++++++|+++++..+..++..++...|.+|++|+++||.++.+|+|.+|.|+++.++..+..++.|++
T Consensus 124 ~~~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~~~~~v~~l~~G~~ 199 (381)
T 4din_B 124 TMTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYVNGEWVTNISEGGS 199 (381)
T ss_dssp HHHHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEETTEEEEEEESSCC
T ss_pred HHHHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEECCeEeeeCCCCCE
Confidence 3455678999999999999999999999999999999999999999999999999999999998888889988864
No 31
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=99.02 E-value=1.9e-10 Score=90.61 Aligned_cols=55 Identities=16% Similarity=0.312 Sum_probs=51.8
Q ss_pred ceehhhhhhhheeeeecCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17883 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQ 56 (195)
Q Consensus 2 Y~~sly~~~~tl~t~gygdi~p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~ 56 (195)
|..|+||++.|+||+||||+.|.+..+++++++.+++|++++|++++.+...++.
T Consensus 79 ~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~ 133 (321)
T 2qks_A 79 FGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQ 133 (321)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999877765
No 32
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.02 E-value=1.1e-09 Score=82.67 Aligned_cols=74 Identities=16% Similarity=0.255 Sum_probs=67.2
Q ss_pred HHhHHHhhcCCccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEeCCc-EEEEeecccC
Q psy17883 122 HLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDE-VVAILDLIWY 195 (195)
Q Consensus 122 ~~~~~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~-~~~~l~~~~~ 195 (195)
.+...+++++++|+++++..+..++..++...|.+|+.|+++||.++.+|+|.+|+|++...+. .+..++.|++
T Consensus 121 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~~~~~l~~g~~ 195 (246)
T 3of1_A 121 LMYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQGVINKLKDHDY 195 (246)
T ss_dssp HHSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTEEEEEEETTCE
T ss_pred HHHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCceEEEcCCCCc
Confidence 4456788899999999999999999999999999999999999999999999999999998776 6788888764
No 33
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=99.00 E-value=2.3e-10 Score=90.54 Aligned_cols=56 Identities=18% Similarity=0.322 Sum_probs=52.3
Q ss_pred ceehhhhhhhheeeeecCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17883 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQM 57 (195)
Q Consensus 2 Y~~sly~~~~tl~t~gygdi~p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~~ 57 (195)
|..|+||++.|+||+||||+.|.+..+++++++.+++|+++++++++.+...+...
T Consensus 97 ~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~ 152 (333)
T 1p7b_A 97 FVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARP 152 (333)
T ss_dssp THHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999998877643
No 34
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=98.98 E-value=9.1e-10 Score=87.13 Aligned_cols=71 Identities=23% Similarity=0.205 Sum_probs=63.1
Q ss_pred hHHHhhcCCccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEeCCc----EEEEeeccc
Q psy17883 124 NRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDE----VVAILDLIW 194 (195)
Q Consensus 124 ~~~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~----~~~~l~~~~ 194 (195)
..+.++++|+|++++++.++.++..++.+.|.+|++|+++||.++.+|||.+|.|+++..+. .+..++.|.
T Consensus 11 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~G~ 85 (333)
T 4ava_A 11 RVEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIARALPGM 85 (333)
T ss_dssp CHHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCEEEEEECTTC
T ss_pred hHHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEecCCC
Confidence 34788999999999999999999999999999999999999999999999999999986332 566776664
No 35
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.98 E-value=4e-10 Score=86.82 Aligned_cols=55 Identities=24% Similarity=0.440 Sum_probs=50.7
Q ss_pred ceehhhhhhhheeeeecCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17883 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQ 56 (195)
Q Consensus 2 Y~~sly~~~~tl~t~gygdi~p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~ 56 (195)
|..|+||+++|+||+||||+.|.|+.+++++++++++|+.+++++++.+...+..
T Consensus 94 ~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~ 148 (280)
T 3ukm_A 94 FTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITV 148 (280)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999999999999999999999999999999988765543
No 36
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=98.95 E-value=3.6e-10 Score=94.71 Aligned_cols=58 Identities=21% Similarity=0.276 Sum_probs=53.0
Q ss_pred ceehhhhhhhheeeeecCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17883 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQMTS 59 (195)
Q Consensus 2 Y~~sly~~~~tl~t~gygdi~p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~~~~ 59 (195)
|..|+||++.|+||+||||+.|.|..+++++++++++|++++++.++.+..-++....
T Consensus 376 ~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~ 433 (514)
T 2r9r_B 376 IPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYH 433 (514)
T ss_dssp HHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred hhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5679999999999999999999999999999999999999999999999887766543
No 37
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.94 E-value=3e-10 Score=87.52 Aligned_cols=56 Identities=13% Similarity=0.411 Sum_probs=51.5
Q ss_pred ceehhhhhhhheeeeecCCcccCCch-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17883 2 YVTALYFTMTCMTSVGFGNVAAETDN-------EKIFTICMMIIAALLYATIFGHVTTIIQQM 57 (195)
Q Consensus 2 Y~~sly~~~~tl~t~gygdi~p~t~~-------e~~~~i~~~~~g~~~~a~~i~~i~~~~~~~ 57 (195)
|+.|+||++.|++|+||||+.|.+.. .++++++++++|+.+++++++.+.++....
T Consensus 202 ~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~ 264 (280)
T 3ukm_A 202 FLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELK 264 (280)
T ss_dssp HHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred hhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999985 499999999999999999999998877653
No 38
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.94 E-value=4.3e-10 Score=87.95 Aligned_cols=54 Identities=13% Similarity=0.269 Sum_probs=50.4
Q ss_pred ceehhhhhhhheeeeecCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17883 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQ 55 (195)
Q Consensus 2 Y~~sly~~~~tl~t~gygdi~p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~ 55 (195)
|..|+||++.|+||+||||+.|.+..+++++++.+++|++++++.++.+...++
T Consensus 83 ~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~ 136 (301)
T 1xl4_A 83 FTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFT 136 (301)
T ss_dssp HHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999999999999988777664
No 39
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=98.94 E-value=1.8e-09 Score=89.31 Aligned_cols=84 Identities=15% Similarity=0.121 Sum_probs=74.1
Q ss_pred CCHhHHHHHHHHHhHHHhhcCCccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEeCC------
Q psy17883 111 CPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDD------ 184 (195)
Q Consensus 111 lp~~L~~~i~~~~~~~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~------ 184 (195)
.|+..|.+-..+...+.++++++|++++++.++.++..++...|.+|++|+++||.++.+|+|.+|.|+++..+
T Consensus 27 ~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~~ 106 (469)
T 1o7f_A 27 KRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQD 106 (469)
T ss_dssp SCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGG
T ss_pred CChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCCc
Confidence 46777777777888899999999999999999999999999999999999999999999999999999998632
Q ss_pred -cEEEEeeccc
Q psy17883 185 -EVVAILDLIW 194 (195)
Q Consensus 185 -~~~~~l~~~~ 194 (195)
..+..++.|.
T Consensus 107 ~~~~~~~~~G~ 117 (469)
T 1o7f_A 107 AVTICTLGIGT 117 (469)
T ss_dssp CEEEEEECTTC
T ss_pred ceEEEEccCCC
Confidence 3566777665
No 40
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=98.92 E-value=2e-09 Score=79.74 Aligned_cols=67 Identities=13% Similarity=0.181 Sum_probs=57.1
Q ss_pred hhcCCccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEe--CCc---EEEEeeccc
Q psy17883 128 FNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQ--DDE---VVAILDLIW 194 (195)
Q Consensus 128 l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~--~~~---~~~~l~~~~ 194 (195)
|+++|+|++++++.++.++..++...|.+|++|+++||+.+.+|||.+|.|+++. +++ .+..++.|.
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~ 72 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGE 72 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTC
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCC
Confidence 5689999999999999999999999999999999999999999999999999985 233 355666664
No 41
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=98.91 E-value=1.6e-09 Score=81.22 Aligned_cols=70 Identities=16% Similarity=0.198 Sum_probs=61.1
Q ss_pred HHHhhcCCccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEeC--Cc---EEEEeeccc
Q psy17883 125 RKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQD--DE---VVAILDLIW 194 (195)
Q Consensus 125 ~~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~--~~---~~~~l~~~~ 194 (195)
.++++++|+|++++++.++.++..++...|.+|++|+++||+.+.+|||.+|.|+++.. ++ .+..++.|.
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~ 79 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPG 79 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSE
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCC
Confidence 46889999999999999999999999999999999999999999999999999999863 22 355666654
No 42
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=98.91 E-value=1.9e-09 Score=81.04 Aligned_cols=73 Identities=12% Similarity=0.192 Sum_probs=63.6
Q ss_pred HHhHHHhhcCCccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEe--CCc---EEEEeeccc
Q psy17883 122 HLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQ--DDE---VVAILDLIW 194 (195)
Q Consensus 122 ~~~~~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~--~~~---~~~~l~~~~ 194 (195)
....+.++++|+|++++++.++.++..++...|.+|++|+++||+.+.+|||.+|.|+++. +++ .+..++.|.
T Consensus 7 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~ 84 (237)
T 3fx3_A 7 EAQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGE 84 (237)
T ss_dssp HHHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTE
T ss_pred HHHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCC
Confidence 3455789999999999999999999999999999999999999999999999999999986 232 355666664
No 43
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=98.90 E-value=2.3e-09 Score=79.65 Aligned_cols=69 Identities=13% Similarity=0.141 Sum_probs=59.2
Q ss_pred HHhhcCCccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEe--CCc---EEEEeeccc
Q psy17883 126 KVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQ--DDE---VVAILDLIW 194 (195)
Q Consensus 126 ~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~--~~~---~~~~l~~~~ 194 (195)
++++++|+|++++++.++.++..++...|.+|++|+++||..+.+|||.+|.|+++. +++ .+..++.|.
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~ 76 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMD 76 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTC
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCC
Confidence 578899999999999999999999999999999999999999999999999999985 332 345555554
No 44
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=98.90 E-value=2.3e-09 Score=80.11 Aligned_cols=70 Identities=17% Similarity=0.300 Sum_probs=61.6
Q ss_pred HHHhhcCCccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEeC--Cc---EEEEeeccc
Q psy17883 125 RKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQD--DE---VVAILDLIW 194 (195)
Q Consensus 125 ~~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~--~~---~~~~l~~~~ 194 (195)
.+.++++|+|.+++++.++.++..++...|.+|++|+++||+++.+|||.+|.|+++.. ++ .+..++.|.
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~ 79 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSD 79 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTC
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCC
Confidence 46789999999999999999999999999999999999999999999999999999862 22 355666664
No 45
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=98.90 E-value=2.4e-09 Score=96.34 Aligned_cols=88 Identities=17% Similarity=0.155 Sum_probs=72.3
Q ss_pred HHHhhCCHhHHHHHHHHHhHHHhhcCCccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEeC--
Q psy17883 106 KVLNYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQD-- 183 (195)
Q Consensus 106 ~il~~lp~~L~~~i~~~~~~~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~-- 183 (195)
..+++-| .-|.+=..+...+.|+++++|+++++..+.+|+..|+.+.|.+|++||++||.++++|+|.+|.|+|+..
T Consensus 23 ~~L~K~p-~~Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~ 101 (999)
T 4f7z_A 23 ACLDKRP-LERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSET 101 (999)
T ss_dssp HHHHSCS-SSCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSS
T ss_pred HHhcCCc-ccCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecC
Confidence 4555544 3444444456668899999999999999999999999999999999999999999999999999999852
Q ss_pred -----CcEEEEeeccc
Q psy17883 184 -----DEVVAILDLIW 194 (195)
Q Consensus 184 -----~~~~~~l~~~~ 194 (195)
+..++.++.|.
T Consensus 102 ~~~~~~~~v~~l~~G~ 117 (999)
T 4f7z_A 102 SSHQDAVTICTLGIGT 117 (999)
T ss_dssp SCTTSCEEEEEEETTC
T ss_pred CCCCCceeEEEecCCc
Confidence 23567777775
No 46
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.90 E-value=2.5e-10 Score=89.21 Aligned_cols=57 Identities=19% Similarity=0.483 Sum_probs=51.2
Q ss_pred ceehhhhhhhheeeeecCCcccCCchhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17883 2 YVTALYFTMTCMTSVGFGNVAAETDNEK------IFTICMMIIAALLYATIFGHVTTIIQQMT 58 (195)
Q Consensus 2 Y~~sly~~~~tl~t~gygdi~p~t~~e~------~~~i~~~~~g~~~~a~~i~~i~~~~~~~~ 58 (195)
|+.|+||++.|++|+||||+.|.+..++ +++++++++|+.+++++++.++..+....
T Consensus 225 ~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~ 287 (309)
T 3um7_A 225 KLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVS 287 (309)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999887 59999999999999999998877765433
No 47
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=98.89 E-value=2.4e-09 Score=78.07 Aligned_cols=71 Identities=20% Similarity=0.300 Sum_probs=61.6
Q ss_pred hHHHhhcCCccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEe--CCc---EEEEeeccc
Q psy17883 124 NRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQ--DDE---VVAILDLIW 194 (195)
Q Consensus 124 ~~~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~--~~~---~~~~l~~~~ 194 (195)
...+++++|.|.+++++.++.++..++...|.+|++|+++||+.+.+|||.+|.|+++. +++ .+..++.|+
T Consensus 5 ~~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~ 80 (194)
T 3dn7_A 5 HTALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENW 80 (194)
T ss_dssp CHHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCc
Confidence 45678889999999999999999999999999999999999999999999999999985 333 344555554
No 48
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=98.88 E-value=1.7e-09 Score=80.72 Aligned_cols=70 Identities=13% Similarity=0.305 Sum_probs=61.1
Q ss_pred HHHhhcCCccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEeCC--c---EEEEeeccc
Q psy17883 125 RKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDD--E---VVAILDLIW 194 (195)
Q Consensus 125 ~~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~--~---~~~~l~~~~ 194 (195)
.++++++|+|++++++.++.++..++...|.+|++|+++||+.+.+|||.+|.|+++..+ + .+..++.|.
T Consensus 8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~ 82 (227)
T 3dkw_A 8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERN 82 (227)
T ss_dssp HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTE
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCC
Confidence 478999999999999999999999999999999999999999999999999999998532 2 345555553
No 49
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=98.88 E-value=3.9e-09 Score=87.22 Aligned_cols=75 Identities=24% Similarity=0.235 Sum_probs=66.3
Q ss_pred HHHhHHHhhcCCccccCChHHHHHHhhhcccc-cccCCceeEecCCCCCeEEEEEeeeEEEEeCCc-EEEEeecccC
Q psy17883 121 VHLNRKVFNEHPAFRLASDGCLRALAMHFTMS-HSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDE-VVAILDLIWY 195 (195)
Q Consensus 121 ~~~~~~~l~~~~~f~~~~~~~l~~l~~~l~~~-~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~-~~~~l~~~~~ 195 (195)
.+...+.+.++++|.++++..+..++..+... .|.+|++|+++||.++.+|||.+|.|+++..+. .+..++.|.+
T Consensus 332 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~l~~G~~ 408 (469)
T 1o7f_A 332 LEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDD 408 (469)
T ss_dssp HHHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTTEEEEEEETTCE
T ss_pred HHHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcCCeeEEEecCCCE
Confidence 34456789999999999999999999999864 999999999999999999999999999998765 6778888764
No 50
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=98.88 E-value=2.2e-09 Score=87.87 Aligned_cols=77 Identities=13% Similarity=0.112 Sum_probs=66.5
Q ss_pred HHHHHHhHHHhhcCCccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEeC-C---cEEEEeecc
Q psy17883 118 DICVHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQD-D---EVVAILDLI 193 (195)
Q Consensus 118 ~i~~~~~~~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~-~---~~~~~l~~~ 193 (195)
+-......+.++++++|+++++..++.|+..++...|.+|++|+++||.++.+|||.+|.|+++.. + ..+..++.|
T Consensus 137 ~~~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~~~v~~l~~G 216 (416)
T 3tnp_B 137 DDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNR 216 (416)
T ss_dssp HHHHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSSCEEEEEEEESC
T ss_pred HHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCEEEEEEecCC
Confidence 344566778999999999999999999999999999999999999999999999999999999863 2 235666666
Q ss_pred c
Q psy17883 194 W 194 (195)
Q Consensus 194 ~ 194 (195)
+
T Consensus 217 ~ 217 (416)
T 3tnp_B 217 G 217 (416)
T ss_dssp C
T ss_pred C
Confidence 4
No 51
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=98.86 E-value=4.7e-09 Score=81.72 Aligned_cols=74 Identities=19% Similarity=0.280 Sum_probs=65.9
Q ss_pred HHhHHHhhcCCccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEeCC------cEEEEeecccC
Q psy17883 122 HLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDD------EVVAILDLIWY 195 (195)
Q Consensus 122 ~~~~~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~------~~~~~l~~~~~ 195 (195)
.....+++++|+|+++++..+..++..++...|.+|++|+++||.++.+|+|.+|+|++...+ ..+..++.|.+
T Consensus 153 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~~ 232 (299)
T 3shr_A 153 TEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDW 232 (299)
T ss_dssp HHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTCE
T ss_pred HHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCCE
Confidence 456688999999999999999999999999999999999999999999999999999998754 25677777753
No 52
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=98.85 E-value=6.7e-09 Score=78.00 Aligned_cols=72 Identities=13% Similarity=0.371 Sum_probs=62.2
Q ss_pred HhHHHhhcCCccccCChHHHHHHhhh--cccccccCCceeEecCCCCCeEEEEEeeeEEEEeC--C---cEEEEeeccc
Q psy17883 123 LNRKVFNEHPAFRLASDGCLRALAMH--FTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQD--D---EVVAILDLIW 194 (195)
Q Consensus 123 ~~~~~l~~~~~f~~~~~~~l~~l~~~--l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~--~---~~~~~l~~~~ 194 (195)
.....+.++|+|++++++.++.++.. ++...|.+|++|+++||..+.+|||.+|.|+++.. + ..+..++.|.
T Consensus 15 ~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~G~ 93 (232)
T 1zyb_A 15 TMFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPY 93 (232)
T ss_dssp HHHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSE
T ss_pred HHHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEEEEEccCCC
Confidence 34477899999999999999999998 99999999999999999999999999999999752 2 2455666664
No 53
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=98.82 E-value=1.8e-10 Score=91.64 Aligned_cols=58 Identities=17% Similarity=0.429 Sum_probs=51.2
Q ss_pred ceehhhhhhhheeeeecCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17883 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQMTS 59 (195)
Q Consensus 2 Y~~sly~~~~tl~t~gygdi~p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~~~~ 59 (195)
|..|+||++.|+||+||||+.|.|..+++++++++++|+.++++.++.+...+.....
T Consensus 46 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 103 (336)
T 1lnq_A 46 WTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQ 103 (336)
T ss_dssp SSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC-----
T ss_pred HHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999888776443
No 54
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=98.82 E-value=1.6e-08 Score=78.21 Aligned_cols=75 Identities=17% Similarity=0.144 Sum_probs=65.4
Q ss_pred HHHhHHHhhcCCccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEeC---C---cEEEEeeccc
Q psy17883 121 VHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQD---D---EVVAILDLIW 194 (195)
Q Consensus 121 ~~~~~~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~---~---~~~~~l~~~~ 194 (195)
......+++++++|+++++..+..++..++...|.+|+.|+++||.++.+|+|.+|+|++... + ..+..++.|.
T Consensus 152 ~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~ 231 (291)
T 2qcs_B 152 RKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSD 231 (291)
T ss_dssp HHHHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTC
T ss_pred HHHHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCC
Confidence 345567888999999999999999999999999999999999999999999999999999852 2 2577787775
Q ss_pred C
Q psy17883 195 Y 195 (195)
Q Consensus 195 ~ 195 (195)
+
T Consensus 232 ~ 232 (291)
T 2qcs_B 232 Y 232 (291)
T ss_dssp E
T ss_pred E
Confidence 3
No 55
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=98.81 E-value=6.8e-09 Score=77.56 Aligned_cols=70 Identities=14% Similarity=0.277 Sum_probs=50.8
Q ss_pred HHHhhcCCccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEe--CCc---EEEEeeccc
Q psy17883 125 RKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQ--DDE---VVAILDLIW 194 (195)
Q Consensus 125 ~~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~--~~~---~~~~l~~~~ 194 (195)
...+++.++|.+++++.++.++..++...|.+|+.|+++||+.+.+|||.+|.|+++. +++ .+..++.|.
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~ 84 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGE 84 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTC
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCC
Confidence 4678899999999999999999999999999999999999999999999999999985 222 355666654
No 56
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=98.79 E-value=1.4e-08 Score=87.99 Aligned_cols=89 Identities=24% Similarity=0.205 Sum_probs=73.9
Q ss_pred hHHHhhCCHhHHHHHHHHHhHHHhhcCCccccCChHHHHHHhhhcc-cccccCCceeEecCCCCCeEEEEEeeeEEEEeC
Q psy17883 105 DKVLNYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMHFT-MSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQD 183 (195)
Q Consensus 105 ~~il~~lp~~L~~~i~~~~~~~~l~~~~~f~~~~~~~l~~l~~~l~-~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~ 183 (195)
..+++..| ..|.+-..+...+.++++++|++++++.++.++..+. ...|.+|++|+++||.++.+|||.+|.|+++..
T Consensus 12 r~iL~k~p-~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~ 90 (694)
T 3cf6_E 12 RMILRKPP-GQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY 90 (694)
T ss_dssp HHHHHSCG-GGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred HHHHcCCh-hhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEe
Confidence 34555444 4455445555668999999999999999999999998 689999999999999999999999999999986
Q ss_pred Cc-EEEEeeccc
Q psy17883 184 DE-VVAILDLIW 194 (195)
Q Consensus 184 ~~-~~~~l~~~~ 194 (195)
+. .+..++.|+
T Consensus 91 g~~il~~l~~Gd 102 (694)
T 3cf6_E 91 GKGVVCTLHEGD 102 (694)
T ss_dssp TTEEEEEEETTC
T ss_pred CCEEEEEeCCCC
Confidence 64 677787775
No 57
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.77 E-value=5.3e-09 Score=88.67 Aligned_cols=54 Identities=22% Similarity=0.569 Sum_probs=49.3
Q ss_pred ceehhhhhhhheeeeecCCcccCCchhHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q psy17883 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGH-VTTIIQ 55 (195)
Q Consensus 2 Y~~sly~~~~tl~t~gygdi~p~t~~e~~~~i~~~~~g~~~~a~~i~~-i~~~~~ 55 (195)
|+.|+||++.|+||+||||+.|.|..+++++++++++|+.++++.++. +..++.
T Consensus 52 ~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 106 (565)
T 4gx0_A 52 FMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMFL 106 (565)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred hhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999987 555544
No 58
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=98.77 E-value=1.8e-08 Score=81.49 Aligned_cols=74 Identities=16% Similarity=0.143 Sum_probs=65.8
Q ss_pred HHhHHHhhcCCccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEeCC------cEEEEeecccC
Q psy17883 122 HLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDD------EVVAILDLIWY 195 (195)
Q Consensus 122 ~~~~~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~------~~~~~l~~~~~ 195 (195)
.++..+++++++|+++++..+..++..++...|.+|++|+++||.++.+|||.+|+|+++..+ ..+..++.|.|
T Consensus 244 ~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd~ 323 (381)
T 4din_B 244 KMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDY 323 (381)
T ss_dssp HHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTCE
T ss_pred HHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCCE
Confidence 456678999999999999999999999999999999999999999999999999999998642 24778888764
No 59
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=98.75 E-value=9.8e-09 Score=76.89 Aligned_cols=65 Identities=9% Similarity=0.186 Sum_probs=57.2
Q ss_pred cCCccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEeC-----CcEEEEeeccc
Q psy17883 130 EHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQD-----DEVVAILDLIW 194 (195)
Q Consensus 130 ~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~-----~~~~~~l~~~~ 194 (195)
++|+|++++++.++.++..++...|.||++|+++||+.+.+|||.+|.|+++.. ...+..++.|.
T Consensus 14 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~ 83 (232)
T 2gau_A 14 LRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQ 83 (232)
T ss_dssp SHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTC
T ss_pred ccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCC
Confidence 678999999999999999999999999999999999999999999999999842 22466776664
No 60
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=98.73 E-value=5.6e-09 Score=77.66 Aligned_cols=70 Identities=11% Similarity=0.188 Sum_probs=60.7
Q ss_pred HHHhhcCCccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEe-CCc---EEEEeeccc
Q psy17883 125 RKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQ-DDE---VVAILDLIW 194 (195)
Q Consensus 125 ~~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~-~~~---~~~~l~~~~ 194 (195)
..+++++|+|++++++.++.++..++...|.+|++|+++||..+.+|||.+|.|++.. +++ .+..++.|.
T Consensus 3 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~ 76 (220)
T 2fmy_A 3 QMRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEFTLAILEAGD 76 (220)
T ss_dssp TTCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSSCEEEEEEEETTC
T ss_pred hhhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCC
Confidence 3568899999999999999999999999999999999999999999999999999953 222 355666664
No 61
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=98.67 E-value=6.8e-09 Score=77.35 Aligned_cols=68 Identities=15% Similarity=0.059 Sum_probs=58.6
Q ss_pred HhhcCCccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEe-CCc---EEEEeeccc
Q psy17883 127 VFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQ-DDE---VVAILDLIW 194 (195)
Q Consensus 127 ~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~-~~~---~~~~l~~~~ 194 (195)
+++++|+|++++++.++.++..++...|.+|++|+++||+.+.+|+|.+|.|+++. +++ .+..++.|.
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~ 72 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGD 72 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEEEEEEETTC
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCC
Confidence 36789999999999999999999999999999999999999999999999999952 232 355666664
No 62
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=98.65 E-value=4.6e-08 Score=79.95 Aligned_cols=72 Identities=11% Similarity=0.085 Sum_probs=63.1
Q ss_pred hHHHhhcCCccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEeCC-----------cEEEEeec
Q psy17883 124 NRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDD-----------EVVAILDL 192 (195)
Q Consensus 124 ~~~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~-----------~~~~~l~~ 192 (195)
...+++++++|+++++..+..++..++...|.+|++|+++||.++.+|||.+|+|++...+ ..+..++.
T Consensus 265 ~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l~~ 344 (416)
T 3tnp_B 265 YESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFR 344 (416)
T ss_dssp SSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEEECT
T ss_pred HHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEeCC
Confidence 4467888999999999999999999999999999999999999999999999999998543 24677777
Q ss_pred ccC
Q psy17883 193 IWY 195 (195)
Q Consensus 193 ~~~ 195 (195)
|.|
T Consensus 345 G~~ 347 (416)
T 3tnp_B 345 GQY 347 (416)
T ss_dssp TCE
T ss_pred CCE
Confidence 764
No 63
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=98.64 E-value=6.6e-08 Score=87.05 Aligned_cols=74 Identities=23% Similarity=0.193 Sum_probs=65.3
Q ss_pred HHhHHHhhcCCccccCChHHHHHHhhhccccc-ccCCceeEecCCCCCeEEEEEeeeEEEEeCC-cEEEEeecccC
Q psy17883 122 HLNRKVFNEHPAFRLASDGCLRALAMHFTMSH-SAPGDLLYHTGESIDSLCFIVTGSLEVIQDD-EVVAILDLIWY 195 (195)
Q Consensus 122 ~~~~~~l~~~~~f~~~~~~~l~~l~~~l~~~~-~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~-~~~~~l~~~~~ 195 (195)
+...+.+.++|+|++++...++.|+..+.... +.+|++|+++||.++++|||.+|+|+|+.++ +.++.++.|.|
T Consensus 333 e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~~~~~v~~L~~Gd~ 408 (999)
T 4f7z_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDD 408 (999)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEETTTEEEEEEETTCE
T ss_pred HHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEcCCcceEEecCCCc
Confidence 44557899999999999999999999999755 5789999999999999999999999999755 56889999874
No 64
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=98.56 E-value=1.3e-07 Score=69.45 Aligned_cols=63 Identities=22% Similarity=0.318 Sum_probs=50.9
Q ss_pred CccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEe--CCc---EEEEeeccc
Q psy17883 132 PAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQ--DDE---VVAILDLIW 194 (195)
Q Consensus 132 ~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~--~~~---~~~~l~~~~ 194 (195)
++++.++++.++.++..++...|.+|+.|+++||..+.+|||.+|.|+++. +++ .+..++.|.
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~ 69 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGD 69 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTC
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCC
Confidence 467789999999999999999999999999999999999999999999985 222 355666654
No 65
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.52 E-value=7.8e-08 Score=76.03 Aligned_cols=57 Identities=19% Similarity=0.384 Sum_probs=50.3
Q ss_pred ceehhhhhhhheeeeecCCcccC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17883 2 YVTALYFTMTCMTSVGFGNVAAE--TDNEKIFTICMMIIAALLYATIFGHVTTIIQQMT 58 (195)
Q Consensus 2 Y~~sly~~~~tl~t~gygdi~p~--t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~~~ 58 (195)
+..++||++.|+||+||||+.|. ++..++++.+-+++|+++.|..+|.+..-+++..
T Consensus 92 f~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~ 150 (340)
T 3sya_A 92 FVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPK 150 (340)
T ss_dssp TTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 45799999999999999999997 6889999999999999999999998877665433
No 66
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=98.39 E-value=5.7e-07 Score=68.65 Aligned_cols=60 Identities=23% Similarity=0.367 Sum_probs=49.3
Q ss_pred ccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEeC--Cc---EEEEeeccc
Q psy17883 135 RLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQD--DE---VVAILDLIW 194 (195)
Q Consensus 135 ~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~--~~---~~~~l~~~~ 194 (195)
..++++.++.++..++...|.+|++|+++||+++.+|||.+|.|+++.. ++ .+..++.|.
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~ 119 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGD 119 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTC
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCC
Confidence 5589999999999999999999999999999999999999999999852 22 356666664
No 67
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.35 E-value=3.3e-07 Score=72.56 Aligned_cols=55 Identities=16% Similarity=0.417 Sum_probs=48.6
Q ss_pred ceehhhhhhhheeeeecCCccc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17883 2 YVTALYFTMTCMTSVGFGNVAA--ETDNEKIFTICMMIIAALLYATIFGHVTTIIQQ 56 (195)
Q Consensus 2 Y~~sly~~~~tl~t~gygdi~p--~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~ 56 (195)
+..++||++.|+||+||||+.| .++..++++.+-+++|+++.|..+|.+..-+++
T Consensus 95 f~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~sr 151 (343)
T 3spc_A 95 FVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMAR 151 (343)
T ss_dssp HHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4579999999999999999986 489999999999999999999999877665554
No 68
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=98.34 E-value=3.9e-07 Score=69.02 Aligned_cols=69 Identities=17% Similarity=0.127 Sum_probs=56.7
Q ss_pred HHhhcCCccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEe--CCc---EEEEeeccc
Q psy17883 126 KVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQ--DDE---VVAILDLIW 194 (195)
Q Consensus 126 ~~l~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~--~~~---~~~~l~~~~ 194 (195)
.++.+...+..++++.++.++..++...|.+|++|+++|++.+.+|||.+|.|+++. +++ .+..++.|.
T Consensus 9 ~~~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~ 82 (250)
T 3e6c_C 9 DFCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNS 82 (250)
T ss_dssp CCCCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTC
T ss_pred hhhhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCC
Confidence 344455445899999999999999999999999999999999999999999999986 232 355566654
No 69
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=98.26 E-value=5.5e-07 Score=66.56 Aligned_cols=64 Identities=11% Similarity=0.178 Sum_probs=47.6
Q ss_pred CCccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEeeeEEEEe--CCc---EEEEeeccc
Q psy17883 131 HPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQ--DDE---VVAILDLIW 194 (195)
Q Consensus 131 ~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~--~~~---~~~~l~~~~ 194 (195)
-|.|++.|+...+.++..++...|.+|++|+++||..+.+|||.+|.|+++. +++ .+..++.|.
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~ 72 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQ 72 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSE
T ss_pred cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCC
Confidence 4788889999999999999999999999999999999999999999999985 232 345566654
No 70
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=98.01 E-value=8.7e-06 Score=61.04 Aligned_cols=47 Identities=9% Similarity=0.115 Sum_probs=42.4
Q ss_pred cCChHHHHHHhh--hcccccccCCceeEecCCCCCeEEEEEeeeEEEEe
Q psy17883 136 LASDGCLRALAM--HFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQ 182 (195)
Q Consensus 136 ~~~~~~l~~l~~--~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~ 182 (195)
+++++.++.+.. .++...|.+|++|+++||+.+.+|||.+|.|+++.
T Consensus 3 ~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~ 51 (238)
T 2bgc_A 3 NAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTS 51 (238)
T ss_dssp -CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEE
T ss_pred CCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEE
Confidence 677888888874 69999999999999999999999999999999985
No 71
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=97.92 E-value=1.6e-05 Score=59.82 Aligned_cols=56 Identities=14% Similarity=0.312 Sum_probs=46.8
Q ss_pred hHHHHHHhhhcc---cccccCCceeEecCCCCCeEEEEEeeeEEEEe--CCc---EEEEeeccc
Q psy17883 139 DGCLRALAMHFT---MSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQ--DDE---VVAILDLIW 194 (195)
Q Consensus 139 ~~~l~~l~~~l~---~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~--~~~---~~~~l~~~~ 194 (195)
++.++.|+.... .+.|.+|++|+++|+..+.+|||.+|.|+++. +++ .+..++.|.
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~ 93 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENS 93 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTC
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCC
Confidence 678888888888 99999999999999999999999999999985 222 355565554
No 72
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=97.75 E-value=7.6e-06 Score=63.37 Aligned_cols=57 Identities=7% Similarity=0.170 Sum_probs=45.9
Q ss_pred ceehhhhhhhheeeeecC-Ccc-cCCchh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17883 2 YVTALYFTMTCMTSVGFG-NVA-AETDNE----KIFTICMMIIAALLYATIFGHVTTIIQQMT 58 (195)
Q Consensus 2 Y~~sly~~~~tl~t~gyg-di~-p~t~~e----~~~~i~~~~~g~~~~a~~i~~i~~~~~~~~ 58 (195)
+..|+||++.++||.||| |+. |.+..+ ..+..++++.|.++.+..++.+.+-+....
T Consensus 181 ~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~ 243 (285)
T 3rvy_A 181 LGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILN 243 (285)
T ss_dssp HHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346999999999999999 985 877755 788889999999999999998888776544
No 73
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=91.55 E-value=0.23 Score=43.48 Aligned_cols=52 Identities=8% Similarity=0.284 Sum_probs=43.1
Q ss_pred ehhhhhhhheeeeecCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17883 4 TALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQ 56 (195)
Q Consensus 4 ~sly~~~~tl~t~gygdi~p~t~~e~~~~i~~~~~g~~~~a~~i~~i~~~~~~ 56 (195)
.++|+++.++++.| ++..|.+...+++.++|++++.++.+...+.+++++..
T Consensus 566 ~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 566 NSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 57899999999888 68899999999999999999999999999999999975
No 74
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=84.49 E-value=2.7 Score=27.53 Aligned_cols=43 Identities=23% Similarity=0.264 Sum_probs=30.8
Q ss_pred ccccccCCceeEecCCCCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 150 TMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 150 ~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
....+.||..+-.. ...+++++|++|++++..+ +....+..|.
T Consensus 43 ~~~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~~-g~~~~l~~GD 85 (119)
T 3lwc_A 43 GYGRYAPGQSLTET-MAVDDVMIVLEGRLSVSTD-GETVTAGPGE 85 (119)
T ss_dssp EEEEECTTCEEEEE-CSSEEEEEEEEEEEEEEET-TEEEEECTTC
T ss_pred EEEEECCCCCcCcc-CCCCEEEEEEeCEEEEEEC-CEEEEECCCC
Confidence 34456788766544 3678999999999999885 4455676664
No 75
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=84.20 E-value=1.2 Score=29.39 Aligned_cols=39 Identities=18% Similarity=0.151 Sum_probs=28.7
Q ss_pred cCCceeEecCCCCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 155 APGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 155 ~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
.||..-... +..++++.|++|++.+..+++....++.|.
T Consensus 50 tPG~~~~~~-~~~~E~~~iLeG~~~lt~ddG~~~~l~aGD 88 (116)
T 3es4_A 50 EPGIYNYAG-RDLEETFVVVEGEALYSQADADPVKIGPGS 88 (116)
T ss_dssp CSEEEEECC-CSEEEEEEEEECCEEEEETTCCCEEECTTE
T ss_pred CCceeECee-CCCcEEEEEEEeEEEEEeCCCeEEEECCCC
Confidence 555554444 334599999999999999887777777764
No 76
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=83.12 E-value=4.9 Score=25.40 Aligned_cols=42 Identities=14% Similarity=0.273 Sum_probs=30.8
Q ss_pred cccccCCceeEecCCCCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 151 MSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 151 ~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
...+.||..-.. ...+++++|++|++.+..+++....+..|.
T Consensus 35 ~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i~~g~~~~l~~GD 76 (101)
T 1o5u_A 35 IWEKEVSEFDWY--YDTNETCYILEGKVEVTTEDGKKYVIEKGD 76 (101)
T ss_dssp EEEECSEEEEEE--CSSCEEEEEEEEEEEEEETTCCEEEEETTC
T ss_pred EEEeCCCccccc--CCceEEEEEEeCEEEEEECCCCEEEECCCC
Confidence 455677775443 457899999999999988755566777764
No 77
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=81.93 E-value=2.2 Score=27.69 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=32.2
Q ss_pred hcccccccCCceeEecCCCC-CeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 148 HFTMSHSAPGDLLYHTGESI-DSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 148 ~l~~~~~~~g~~i~~~g~~~-~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
.+....+.||..+-..-... +++++|++|++++..+++....+..|.
T Consensus 40 ~~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~~~~~~l~~Gd 87 (125)
T 3h8u_A 40 VVVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQGNGIVTHLKAGD 87 (125)
T ss_dssp EEEEEEECTTCEECCC-CTTCEEEEEEEECEEEEECSTTCEEEEETTE
T ss_pred EEEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEECCCeEEEeCCCC
Confidence 34456678888766554554 689999999999987455556666654
No 78
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=81.50 E-value=3.7 Score=26.40 Aligned_cols=45 Identities=13% Similarity=-0.025 Sum_probs=33.1
Q ss_pred hcccccccCCceeEecCCCCCeEEEEEeeeEEEEeCCcEEEEeecc
Q psy17883 148 HFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILDLI 193 (195)
Q Consensus 148 ~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~ 193 (195)
.+....+.||..+-..-...++++++++|++++..+++ ...+..|
T Consensus 37 ~v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~~~-~~~l~~G 81 (114)
T 3fjs_A 37 EVMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGVDGA-QRRLHQG 81 (114)
T ss_dssp EEEEEEECTTCEEEEECCSSCEEEEEEESCEEEEETTE-EEEECTT
T ss_pred EEEEEEECCCCccCceeCCCcEEEEEEECEEEEEECCE-EEEECCC
Confidence 34556678888877666667899999999999987665 3445544
No 79
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=81.32 E-value=1.6 Score=28.84 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=29.6
Q ss_pred cccCCceeEecCCCCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 153 HSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 153 ~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
...||..-....+ .+++++|++|++.+..+++....+..|.
T Consensus 55 ~~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~~~g~~~~l~~GD 95 (123)
T 3bcw_A 55 ESTSGSFQSNTTG-YIEYCHIIEGEARLVDPDGTVHAVKAGD 95 (123)
T ss_dssp EEEEEEEECCCTT-EEEEEEEEEEEEEEECTTCCEEEEETTC
T ss_pred EECCCceeeEcCC-CcEEEEEEEEEEEEEECCCeEEEECCCC
Confidence 3456665544332 3899999999999998667667777775
No 80
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=81.25 E-value=1.5 Score=27.26 Aligned_cols=45 Identities=22% Similarity=0.128 Sum_probs=31.0
Q ss_pred ccccccCCceeEecCCCCC-eEEEEEeeeEEEEeCCc-EEEEeeccc
Q psy17883 150 TMSHSAPGDLLYHTGESID-SLCFIVTGSLEVIQDDE-VVAILDLIW 194 (195)
Q Consensus 150 ~~~~~~~g~~i~~~g~~~~-~~y~i~~G~v~v~~~~~-~~~~l~~~~ 194 (195)
....+.||...-..-...+ ++++|++|++++..+++ ....+..|.
T Consensus 21 ~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~g~~~~~l~~Gd 67 (97)
T 2fqp_A 21 TEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPEGSVTSQLTRGV 67 (97)
T ss_dssp EEEEECTTCBCCSEECCSCEEEEESSCEEEEEEETTEEEEEEECTTC
T ss_pred EEEEECCCCCCCCEECCCCcEEEEEeecEEEEEeCCCCEEEEEcCCC
Confidence 3455678876532333344 69999999999998876 566777764
No 81
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=78.76 E-value=4 Score=29.82 Aligned_cols=46 Identities=7% Similarity=0.005 Sum_probs=36.4
Q ss_pred hcccccccCCceeEecCCCCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 148 HFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 148 ~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
.+....+.||+.+=..-.+.+.+.++++|++++..+++. ..+..|+
T Consensus 38 ~~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i~~~~-~~l~~Gd 83 (227)
T 3rns_A 38 YISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFIENNK-KTISNGD 83 (227)
T ss_dssp EEEEEEECTTCEEEECSCSSCEEEEEEESEEEEEESSCE-EEEETTE
T ss_pred EEEEEEECCCCccCccccCCCEEEEEEeCEEEEEECCEE-EEECCCC
Confidence 455667899999988888899999999999999876543 5566554
No 82
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=77.56 E-value=1.2 Score=32.61 Aligned_cols=49 Identities=10% Similarity=0.094 Sum_probs=28.9
Q ss_pred eehhhhhhhheeeeecCCcc----cCCchhHHHHHHHHHHH-HHHHHHHHHHHH
Q psy17883 3 VTALYFTMTCMTSVGFGNVA----AETDNEKIFTICMMIIA-ALLYATIFGHVT 51 (195)
Q Consensus 3 ~~sly~~~~tl~t~gygdi~----p~t~~e~~~~i~~~~~g-~~~~a~~i~~i~ 51 (195)
..|++|.+.++|+.|++|+- ..++...++-+.+.++| .++....++.+.
T Consensus 167 ~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i~lNlfiavi~ 220 (229)
T 4dxw_A 167 GISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSITILNLVIAILV 220 (229)
T ss_dssp HHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999872 22333334444344443 444444444443
No 83
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=75.74 E-value=5.1 Score=25.41 Aligned_cols=42 Identities=21% Similarity=0.076 Sum_probs=28.8
Q ss_pred ccccCCceeEecCCCCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 152 SHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 152 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
..+.||..+-......++++++++|++++..++. ...+..|.
T Consensus 43 ~~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i~~~-~~~l~~Gd 84 (114)
T 2ozj_A 43 FSFADGESVSEEEYFGDTLYLILQGEAVITFDDQ-KIDLVPED 84 (114)
T ss_dssp EEEETTSSCCCBCCSSCEEEEEEEEEEEEEETTE-EEEECTTC
T ss_pred EEECCCCccccEECCCCeEEEEEeCEEEEEECCE-EEEecCCC
Confidence 3356776655455567799999999999887654 44555553
No 84
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=75.42 E-value=2.7 Score=29.65 Aligned_cols=47 Identities=13% Similarity=0.064 Sum_probs=31.5
Q ss_pred hcccccccCCceeEecCCCCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 148 HFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 148 ~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
.+....+.||...-..-....++.+|++|++++..+++....+..|.
T Consensus 80 ~~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld~ge~~~L~~GD 126 (172)
T 3es1_A 80 VIRVVDMLPGKESPMHRTNSIDYGIVLEGEIELELDDGAKRTVRQGG 126 (172)
T ss_dssp EEEEEEECTTCBCCCBCCSEEEEEEEEESCEEEECGGGCEEEECTTC
T ss_pred EEEEEEECCCCCCCCeecCceEEEEEEeCEEEEEECCCeEEEECCCC
Confidence 34445566766443333345578899999999988755566777764
No 85
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=74.89 E-value=4.9 Score=29.44 Aligned_cols=41 Identities=15% Similarity=-0.004 Sum_probs=28.8
Q ss_pred ccCCceeEecCCCCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 154 SAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 154 ~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
+.||-..=.--.+.+++|+|++|..+...+++....++.|.
T Consensus 139 l~PG~~yP~HsHp~EEiy~VLsG~~e~~v~~g~~~~l~pGd 179 (217)
T 4b29_A 139 WGPGLDYGWHEHLPEELYSVVSGRALFHLRNAPDLMLEPGQ 179 (217)
T ss_dssp ECSSCEEEEEECSSEEEEEEEEECEEEEETTSCCEEECTTC
T ss_pred ECCCCcCCCCCCCCceEEEEEeCCEEEEECCCCEEecCCCC
Confidence 34444433334567799999999999988877666776664
No 86
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=73.54 E-value=7.8 Score=24.93 Aligned_cols=45 Identities=13% Similarity=0.183 Sum_probs=31.6
Q ss_pred hcccccccCCceeEecCCCCCeEEEEEeeeEEEEeCCcEEEEeecc
Q psy17883 148 HFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILDLI 193 (195)
Q Consensus 148 ~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~ 193 (195)
.+....+.||..+-..-....+++++++|++++..+++. ..+..|
T Consensus 42 ~~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~~-~~l~~G 86 (126)
T 4e2g_A 42 MLNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTIGEET-RVLRPG 86 (126)
T ss_dssp EEEEEEECTTCEEEEECCSSEEEEEEEEECEEEEETTEE-EEECTT
T ss_pred EEEEEEECCCCcCCCccCCCceEEEEEEeEEEEEECCEE-EEeCCC
Confidence 345566788887765555567999999999999876543 445444
No 87
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=73.11 E-value=8.8 Score=24.20 Aligned_cols=45 Identities=16% Similarity=0.130 Sum_probs=30.2
Q ss_pred cccccccCCceeEecCCCCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 149 FTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 149 l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
+....+.||..+-..-....+++++++|++++..++. ...+..|.
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~-~~~l~~Gd 80 (116)
T 2pfw_A 36 AVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNVDGV-IKVLTAGD 80 (116)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEEECEEEEETTE-EEEECTTC
T ss_pred EEEEEECCCCcCCcEECCcceEEEEEeeEEEEEECCE-EEEeCCCC
Confidence 3445567887654434446799999999999887554 44555553
No 88
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=73.09 E-value=5.7 Score=26.48 Aligned_cols=41 Identities=15% Similarity=0.066 Sum_probs=28.0
Q ss_pred cccccCCceeEecCCCCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 151 MSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 151 ~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
...+.||..- .....+++++|++|++++..++. ...+..|+
T Consensus 61 ~~~~~pG~~~--~h~~~~E~~~VLeG~~~l~~~g~-~~~l~~GD 101 (133)
T 2pyt_A 61 FMQWDNAFFP--WTLNYDEIDMVLEGELHVRHEGE-TMIAKAGD 101 (133)
T ss_dssp EEEEEEEEEE--EECSSEEEEEEEEEEEEEEETTE-EEEEETTC
T ss_pred EEEECCCCcc--ccCCCCEEEEEEECEEEEEECCE-EEEECCCc
Confidence 4456777322 22347899999999999988744 44677664
No 89
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=72.21 E-value=10 Score=23.78 Aligned_cols=45 Identities=18% Similarity=0.126 Sum_probs=30.8
Q ss_pred cccccccCCceeEecCCCCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 149 FTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 149 l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
+....+.||..+-..-....+++++++|++.+..++. ...+..|.
T Consensus 42 ~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~~~~-~~~l~~Gd 86 (115)
T 1yhf_A 42 ITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITIDQE-TYRVAEGQ 86 (115)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEESEEEEEETTE-EEEEETTC
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeCEEEEEECCE-EEEECCCC
Confidence 4455667887765444456799999999999987654 34555553
No 90
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=69.82 E-value=5.3 Score=28.19 Aligned_cols=43 Identities=14% Similarity=0.156 Sum_probs=29.9
Q ss_pred ccccCCceeE---ecCCCCCeEEEEEeeeEEEEeCCc---EEEEeeccc
Q psy17883 152 SHSAPGDLLY---HTGESIDSLCFIVTGSLEVIQDDE---VVAILDLIW 194 (195)
Q Consensus 152 ~~~~~g~~i~---~~g~~~~~~y~i~~G~v~v~~~~~---~~~~l~~~~ 194 (195)
..+.||...- .....++++++|++|++++..+++ ....+..|.
T Consensus 122 ~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~~~~~~l~~GD 170 (198)
T 2bnm_A 122 VDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPKEALLPTGA 170 (198)
T ss_dssp EEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCEEEEECTTC
T ss_pred EEEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCCcccEEECCCC
Confidence 3456776543 233345799999999999988773 566777775
No 91
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=68.72 E-value=13 Score=22.47 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=28.9
Q ss_pred cccccccCCceeEecCCC-CCeEEEEEeeeEEEEeCCcEEEEeecc
Q psy17883 149 FTMSHSAPGDLLYHTGES-IDSLCFIVTGSLEVIQDDEVVAILDLI 193 (195)
Q Consensus 149 l~~~~~~~g~~i~~~g~~-~~~~y~i~~G~v~v~~~~~~~~~l~~~ 193 (195)
+....+.||..+-..-.. .++++++++|++.+..+++ ...+..|
T Consensus 30 ~~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~~~~-~~~l~~G 74 (105)
T 1v70_A 30 YDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVGEE-EALLAPG 74 (105)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEETTE-EEEECTT
T ss_pred EEEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEECCE-EEEeCCC
Confidence 344566788776543334 3579999999999877653 3445444
No 92
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=67.71 E-value=6.8 Score=24.93 Aligned_cols=43 Identities=9% Similarity=-0.013 Sum_probs=27.8
Q ss_pred ccccCCceeEecCCCCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 152 SHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 152 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
..+.||...-..-....+++++++|++.+..++.....+..|.
T Consensus 32 ~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~~~~~~~l~~Gd 74 (117)
T 2b8m_A 32 IVLPRGEQMPKHYSNSYVHLIIIKGEMTLTLEDQEPHNYKEGN 74 (117)
T ss_dssp EEEETTCBCCCEECSSCEEEEEEESEEEEEETTSCCEEEETTC
T ss_pred EEECCCCcCCCEeCCCcEEEEEEeCEEEEEECCEEEEEeCCCC
Confidence 3455666543223345689999999999988766543565553
No 93
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}
Probab=66.55 E-value=7.2 Score=29.00 Aligned_cols=28 Identities=11% Similarity=0.102 Sum_probs=23.8
Q ss_pred CCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 167 IDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 167 ~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
.+++..|++|++.+..+++....++.|.
T Consensus 186 ~~E~~~ILeG~v~lt~~~G~~~~~~aGD 213 (238)
T 3myx_A 186 IHELMNLIEGRVVLSLENGSSLTVNTGD 213 (238)
T ss_dssp SCEEEEEEECCEEEEETTSCEEEECTTC
T ss_pred CCEEEEEEEeEEEEEeCCCCEEEECCCC
Confidence 5699999999999999888777777764
No 94
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=65.95 E-value=14 Score=22.89 Aligned_cols=44 Identities=27% Similarity=0.226 Sum_probs=29.4
Q ss_pred cccccccCCceeEec--CCC-CCeEEEEEeeeEEEEeCCcEEEEeecc
Q psy17883 149 FTMSHSAPGDLLYHT--GES-IDSLCFIVTGSLEVIQDDEVVAILDLI 193 (195)
Q Consensus 149 l~~~~~~~g~~i~~~--g~~-~~~~y~i~~G~v~v~~~~~~~~~l~~~ 193 (195)
+....+.||..+-.. -.. ..+++++++|++++..++. ...+..|
T Consensus 23 ~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~~~~-~~~l~~G 69 (113)
T 2gu9_A 23 AAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIVDGH-TQALQAG 69 (113)
T ss_dssp EEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEETTE-EEEECTT
T ss_pred EEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEECCE-EEEeCCC
Confidence 344567888876543 334 6799999999999887654 3344444
No 95
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=65.04 E-value=3.9 Score=25.65 Aligned_cols=41 Identities=24% Similarity=0.170 Sum_probs=26.3
Q ss_pred ccCCceeEecCCCCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 154 SAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 154 ~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
..||+......+..++++++++|++++..+++....+..|.
T Consensus 35 ~~~g~~~~H~H~~~~E~~~Vl~G~~~~~~~~~~~~~l~~Gd 75 (107)
T 2i45_A 35 KLLGDYGWHTHGYSDKVLFAVEGDMAVDFADGGSMTIREGE 75 (107)
T ss_dssp EEEEECCCBCC--CCEEEEESSSCEEEEETTSCEEEECTTE
T ss_pred ECCCCCcceeCCCCCEEEEEEeCEEEEEECCCcEEEECCCC
Confidence 34665443333323899999999999988773455666653
No 96
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=64.34 E-value=4.2 Score=30.81 Aligned_cols=46 Identities=13% Similarity=0.136 Sum_probs=30.3
Q ss_pred cccccccCCceeEecCCCCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 149 FTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 149 l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
+-...+.||.--=.....++++.+|++|++++..+++....+..|+
T Consensus 72 ~~lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~l~~g~~~~L~~Gd 117 (266)
T 4e2q_A 72 MYLAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNTSSSSKKLTVDS 117 (266)
T ss_dssp EEEEEECSSEECCCCCTTEEEEEEEEEECEEEEC--CCCEEECTTE
T ss_pred EEEEEECcCCcCCCCCCCCeEEEEEEEEEEEEEECCCcEEEEcCCC
Confidence 4455667777642223345699999999999998744456677765
No 97
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}
Probab=64.20 E-value=14 Score=26.15 Aligned_cols=41 Identities=15% Similarity=0.220 Sum_probs=32.4
Q ss_pred hcCCccccCChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEe
Q psy17883 129 NEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVT 175 (195)
Q Consensus 129 ~~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~ 175 (195)
-+.|.|++++...-++++.. .+||.|+|..+.++++-+-.+
T Consensus 12 I~HP~F~n~s~~qAe~~L~~------~~G~~liRPSsk~~~ltit~K 52 (178)
T 2xp1_A 12 YKHPLFKNFNVTESENYLRS------STDDFLIRKGSRHGYCVLVIK 52 (178)
T ss_dssp GGSTTEECCCHHHHHHHHHH------SSCCEEEEECSSTTEEEEEEE
T ss_pred ccCCCcCCCCHHHHHHHHhc------CCCCEEEeecCCCCcEEEEEE
Confidence 46799999999988887777 369999999998776555443
No 98
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=63.79 E-value=12 Score=25.20 Aligned_cols=44 Identities=11% Similarity=-0.025 Sum_probs=29.7
Q ss_pred ccccccCCceeEecCCCCCeEEEEEeeeEEEEeCCcEEEEeecc
Q psy17883 150 TMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILDLI 193 (195)
Q Consensus 150 ~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~ 193 (195)
....+.||..+-..-....+++++++|++.+..++.....+..|
T Consensus 51 ~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~l~~G 94 (147)
T 2f4p_A 51 YDVVFEPGARTHWHSHPGGQILIVTRGKGFYQERGKPARILKKG 94 (147)
T ss_dssp EEEEECTTCEECSEECTTCEEEEEEEEEEEEEETTSCCEEEETT
T ss_pred EEEEECCCCccCceECCCceEEEEEeCEEEEEECCEEEEEECCC
Confidence 34556777765433334579999999999998776643455555
No 99
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=63.65 E-value=16 Score=26.87 Aligned_cols=46 Identities=15% Similarity=0.124 Sum_probs=34.1
Q ss_pred hcccccccCCceeEecCCCCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 148 HFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 148 ~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
.+....+.||..+-..-....+++++++|++++..+++ ...+..|+
T Consensus 35 ~~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~~~~-~~~l~~Gd 80 (243)
T 3h7j_A 35 EVLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTVGDV-TRKMTALE 80 (243)
T ss_dssp EEEEEEECTTEEEEEECCSSEEEEEEEESEEEEEETTE-EEEEETTT
T ss_pred EEEEEEECCCCccCCEECCCcEEEEEEEeEEEEEECCE-EEEECCCC
Confidence 34455688998877665667899999999999988544 45666664
No 100
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=63.37 E-value=12 Score=25.60 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=21.7
Q ss_pred CCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 166 SIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 166 ~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
..+++++|++|++++..+ +....+..|.
T Consensus 83 ~~eE~~yVLeG~~~l~i~-g~~~~l~~GD 110 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIIID-GRKVSASSGE 110 (151)
T ss_dssp SSEEEEEEEEEEEEEEET-TEEEEEETTC
T ss_pred CCcEEEEEEEeEEEEEEC-CEEEEEcCCC
Confidence 467999999999999874 4566677664
No 101
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=63.24 E-value=13 Score=25.65 Aligned_cols=44 Identities=23% Similarity=0.296 Sum_probs=30.0
Q ss_pred cccccccCCceeEecCCCCCeEEEEEeeeEEEEeCCcEEEEeecc
Q psy17883 149 FTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILDLI 193 (195)
Q Consensus 149 l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~ 193 (195)
+....+.||..+-..-....++++|++|++.+..+++ ...+..|
T Consensus 58 ~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i~~~-~~~l~~G 101 (167)
T 3ibm_A 58 TRYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVLDDR-VEPLTPL 101 (167)
T ss_dssp EEEEEECTTCBCCCBBCSSCEEEEEEESEEEEEETTE-EEEECTT
T ss_pred EEEEEECCCCCCCCccCCCcEEEEEEeCEEEEEECCE-EEEECCC
Confidence 3445667777655444457799999999999987655 3445544
No 102
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=62.63 E-value=14 Score=22.77 Aligned_cols=45 Identities=18% Similarity=0.101 Sum_probs=28.3
Q ss_pred ccccccCCceeEecCCCC-CeE-EEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 150 TMSHSAPGDLLYHTGESI-DSL-CFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 150 ~~~~~~~g~~i~~~g~~~-~~~-y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
....+.||..+-..-... .++ +++++|++++..+++....+..|.
T Consensus 36 ~~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~~~~~~~l~~Gd 82 (110)
T 2q30_A 36 VSFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGDGDAVIPAPRGA 82 (110)
T ss_dssp EEEEECTTCEEEEECCSSSCEEEEEEEESCEEEECGGGCEEEECTTE
T ss_pred EEEEECCCCcCCcccCCCCccEEEEEEeCEEEEEeCCCEEEEECCCC
Confidence 334567887665433332 466 899999999987644445565553
No 103
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=61.58 E-value=18 Score=26.25 Aligned_cols=45 Identities=18% Similarity=0.093 Sum_probs=33.6
Q ss_pred hcccccccCCceeEecCCCCCeEEEEEeeeEEEEeCCcEEEEeecc
Q psy17883 148 HFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILDLI 193 (195)
Q Consensus 148 ~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~ 193 (195)
.+....+.||..+-..-.+.++++++++|++++..+++ ...+..|
T Consensus 154 ~~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~g~-~~~l~~G 198 (227)
T 3rns_A 154 VMTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYVDGK-PFIVKKG 198 (227)
T ss_dssp EEEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEETTE-EEEEETT
T ss_pred EEEEEEECCCCccCCEECCCcEEEEEEeEEEEEEECCE-EEEECCC
Confidence 44567788999877666667899999999999987654 3455555
No 104
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=60.64 E-value=11 Score=25.78 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=28.9
Q ss_pred cccccccCCceeE--ecCCCCCeEEEEEeeeEEEEeCCcEEEEeecc
Q psy17883 149 FTMSHSAPGDLLY--HTGESIDSLCFIVTGSLEVIQDDEVVAILDLI 193 (195)
Q Consensus 149 l~~~~~~~g~~i~--~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~ 193 (195)
+....+.||.... ...+..+++++|++|++++..+++ ...+..|
T Consensus 45 ~~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~~~-~~~l~~G 90 (163)
T 3i7d_A 45 VNLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDDQG-EHPMVPG 90 (163)
T ss_dssp EEEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEETTE-EEEECTT
T ss_pred EEEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEECCE-EEEeCCC
Confidence 3445567777542 333334799999999999987665 3455554
No 105
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=59.90 E-value=10 Score=26.53 Aligned_cols=47 Identities=21% Similarity=0.160 Sum_probs=32.0
Q ss_pred hcccccccCCceeEecCCCCCeEEEEEeeeEEEEe--CC-cEEEEeeccc
Q psy17883 148 HFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQ--DD-EVVAILDLIW 194 (195)
Q Consensus 148 ~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~--~~-~~~~~l~~~~ 194 (195)
.+....+.||...-.....++++++|++|++.+.. ++ +....+..|+
T Consensus 42 ~~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~~~~~l~~GD 91 (178)
T 1dgw_A 42 RVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGD 91 (178)
T ss_dssp EEEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEEEEEEETTE
T ss_pred EEEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCcEEEEECCCC
Confidence 45666788998776554446799999999988743 22 3455666553
No 106
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=59.66 E-value=12 Score=27.64 Aligned_cols=48 Identities=10% Similarity=-0.025 Sum_probs=34.5
Q ss_pred hhhcccccccCCceeEe-cCCCCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 146 AMHFTMSHSAPGDLLYH-TGESIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 146 ~~~l~~~~~~~g~~i~~-~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
...+....+.||..+=. .-....+.++|++|+..+..++.. ..+..|+
T Consensus 164 ~~~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~~~~~-~~l~~GD 212 (246)
T 1sfn_A 164 DFMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKLEENY-YPVTAGD 212 (246)
T ss_dssp SEEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEETTEE-EEEETTC
T ss_pred CeEEEEEEECCCCccCcccCCCceEEEEEEECEEEEEECCEE-EEcCCCC
Confidence 44566778889987664 445567999999999998876543 3666664
No 107
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=59.00 E-value=10 Score=26.49 Aligned_cols=29 Identities=10% Similarity=-0.132 Sum_probs=21.9
Q ss_pred CCCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 165 ESIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 165 ~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
..+++++||++|++++.-++.. ..++.|+
T Consensus 108 h~gEE~~yVLeG~v~vtl~g~~-~~L~~Gd 136 (166)
T 2vpv_A 108 FRTYITFHVIQGIVEVTVCKNK-FLSVKGS 136 (166)
T ss_dssp CSEEEEEEEEESEEEEEETTEE-EEEETTC
T ss_pred CCceEEEEEEEeEEEEEECCEE-EEEcCCC
Confidence 3467999999999999886653 3566664
No 108
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=58.10 E-value=13 Score=25.15 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=19.0
Q ss_pred EecCCCCCeEEEEEeeeEEEEeC
Q psy17883 161 YHTGESIDSLCFIVTGSLEVIQD 183 (195)
Q Consensus 161 ~~~g~~~~~~y~i~~G~v~v~~~ 183 (195)
....+..|++|++++|++.+.-.
T Consensus 44 ~h~H~~tDE~Fivl~G~l~i~~r 66 (140)
T 3d0j_A 44 LEIHHSTDEQFILSAGKAILITA 66 (140)
T ss_dssp EEEESSCCEEEEEEESCEEEEEE
T ss_pred hccCCCCCeEEEEEecEEEEEEe
Confidence 45667789999999999998754
No 109
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=58.03 E-value=14 Score=25.23 Aligned_cols=44 Identities=7% Similarity=-0.059 Sum_probs=28.9
Q ss_pred ccccccCCceeEecCCCCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 150 TMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 150 ~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
....+.||..+-..-....++++|++|++++..+++ ...+..|.
T Consensus 47 ~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v~g~-~~~l~~Gd 90 (156)
T 3kgz_A 47 RYFEVDEGGYSTLERHAHVHAVMIHRGHGQCLVGET-ISDVAQGD 90 (156)
T ss_dssp EEEEEEEEEECCCBBCSSCEEEEEEEEEEEEEETTE-EEEEETTC
T ss_pred EEEEECCCCccCceeCCCcEEEEEEeCEEEEEECCE-EEEeCCCC
Confidence 344456776654444456689999999999987654 44555553
No 110
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=56.31 E-value=7.3 Score=31.27 Aligned_cols=49 Identities=16% Similarity=0.035 Sum_probs=34.8
Q ss_pred hhhc--ccccccCCceeEecCCCCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 146 AMHF--TMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 146 ~~~l--~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
...+ ....+.||+.+-..-....++|||++|+-.....++....+..|+
T Consensus 120 t~~L~a~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~v~G~~~~~~~GD 170 (394)
T 3bu7_A 120 CGWLFSGIQTMKAGERAGAHRHAASALRFIMEGSGAYTIVDGHKVELGAND 170 (394)
T ss_dssp BTTBEEEEEEECTTCBCCCEEESSCEEEEEEECSCEEEEETTEEEEECTTC
T ss_pred CCeeEEEEEEECCCCCcCCccCCcceEEEEEEeeEEEEEECCEEEEEcCCC
Confidence 4444 677889999887555556689999999986645555556666654
No 111
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=55.78 E-value=15 Score=24.94 Aligned_cols=46 Identities=9% Similarity=0.011 Sum_probs=29.6
Q ss_pred cccccccCCceeEecCCCCCeEEEEEeeeEEEEeCCc--------EEEEeeccc
Q psy17883 149 FTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDE--------VVAILDLIW 194 (195)
Q Consensus 149 l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~--------~~~~l~~~~ 194 (195)
+....+.||..+-..-....++++|++|+..+..++. ....+..|.
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd 96 (163)
T 1lr5_A 43 VWLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNT 96 (163)
T ss_dssp EEEEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTE
T ss_pred EEEEEECCCCcCCCeECCCCeEEEEEeCEEEEEECCccccccCccEEEEeCCCC
Confidence 3344567777543222345689999999999987762 445566553
No 112
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=55.77 E-value=14 Score=25.58 Aligned_cols=45 Identities=11% Similarity=0.042 Sum_probs=29.7
Q ss_pred cccccccCCceeEecCCCCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 149 FTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 149 l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
+....+.||..+-..-....++++|++|+.++..+++ ...+..|.
T Consensus 55 ~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v~g~-~~~l~~GD 99 (166)
T 3jzv_A 55 LRYFEVGPGGHSTLERHQHAHGVMILKGRGHAMVGRA-VSAVAPYD 99 (166)
T ss_dssp EEEEEEEEEEECCCBBCSSCEEEEEEEECEEEEETTE-EEEECTTC
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEeCEEEEEECCE-EEEeCCCC
Confidence 3344567777655444456689999999999977654 44555543
No 113
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=55.29 E-value=7.5 Score=26.27 Aligned_cols=33 Identities=12% Similarity=0.160 Sum_probs=27.3
Q ss_pred hcccccccCCceeEecCCCCCeEEEEEeeeEEE
Q psy17883 148 HFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEV 180 (195)
Q Consensus 148 ~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v 180 (195)
.+....+.||..+-.....+.+.++|++|+...
T Consensus 45 ~~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~ 77 (145)
T 2o1q_A 45 WTAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDV 77 (145)
T ss_dssp EEEEEEECTTEEECCEEESSCEEEEEEEEEEEE
T ss_pred EEEEEEECCCCCCCccCCCCCEEEEEEEeEEEE
Confidence 355677899998887777788889999999984
No 114
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=54.73 E-value=15 Score=24.94 Aligned_cols=45 Identities=9% Similarity=0.117 Sum_probs=29.3
Q ss_pred cccccccCCce-eE-ecCCCCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 149 FTMSHSAPGDL-LY-HTGESIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 149 l~~~~~~~g~~-i~-~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
+....+.||.. .- ......+++++|++|++++..+++. ..+..|.
T Consensus 48 ~~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~~~~~-~~l~~Gd 94 (162)
T 3l2h_A 48 IHLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTMENDQ-YPIAPGD 94 (162)
T ss_dssp EEEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEETTEE-EEECTTC
T ss_pred EEEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEECCEE-EEeCCCC
Confidence 34466778874 22 2233567999999999999876643 4555553
No 115
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=54.65 E-value=22 Score=23.00 Aligned_cols=39 Identities=18% Similarity=0.068 Sum_probs=24.2
Q ss_pred CCceeE-ecCCCCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 156 PGDLLY-HTGESIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 156 ~g~~i~-~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
||...- ...+..++++++++|++.+..+++....+..|.
T Consensus 52 ~g~~~~~H~H~~~~E~~~vl~G~~~~~~~~~~~~~l~~Gd 91 (134)
T 2o8q_A 52 KEAKPTWHTHTVGFQLFYVLRGWVEFEYEDIGAVMLEAGG 91 (134)
T ss_dssp ----CCCEEECCSCEEEEEEESEEEEEETTTEEEEEETTC
T ss_pred CCCCCCCEECCCCcEEEEEEeCEEEEEECCcEEEEecCCC
Confidence 555432 233334799999999999988774556666664
No 116
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=53.36 E-value=12 Score=23.76 Aligned_cols=30 Identities=13% Similarity=0.179 Sum_probs=22.3
Q ss_pred CCCCeEEEEEeeeEEEEeCCcEE-EEeeccc
Q psy17883 165 ESIDSLCFIVTGSLEVIQDDEVV-AILDLIW 194 (195)
Q Consensus 165 ~~~~~~y~i~~G~v~v~~~~~~~-~~l~~~~ 194 (195)
...+++++|++|++++..+++.. ..+..|.
T Consensus 51 ~~~~E~~~Vl~G~~~l~~~~~~~~~~l~~Gd 81 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIECEGDTAPRVMRPGD 81 (112)
T ss_dssp CSSEEEEEEEESCEEEEETTCSSCEEECTTE
T ss_pred CCccEEEEEEeCeEEEEECCEEEEEEECCCC
Confidence 45679999999999998877642 4566654
No 117
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}
Probab=52.56 E-value=20 Score=26.62 Aligned_cols=28 Identities=11% Similarity=0.044 Sum_probs=21.6
Q ss_pred CCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 166 SIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 166 ~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
+.|++.+|++|++.+.. ++....++.|.
T Consensus 64 p~dE~~~VleG~~~lt~-~g~~~~~~~Gd 91 (238)
T 3myx_A 64 PYTEMLVMHRGSVTLTS-GTDSVTLSTGE 91 (238)
T ss_dssp SSEEEEEEEESEEEEEE-TTEEEEEETTC
T ss_pred CCcEEEEEEEeEEEEEC-CCeEEEEcCCC
Confidence 45799999999999987 56555666653
No 118
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=52.12 E-value=22 Score=22.87 Aligned_cols=43 Identities=16% Similarity=0.334 Sum_probs=27.6
Q ss_pred ccccccCCceeEecCCCCCeEEEEEeeeEEEEeCCcEEEEeecc
Q psy17883 150 TMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILDLI 193 (195)
Q Consensus 150 ~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~ 193 (195)
....+.||...-..-....+++++++|++++..+++. ..+..|
T Consensus 51 ~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~~~~-~~l~~G 93 (126)
T 1vj2_A 51 RLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKEQGE-ETVEEG 93 (126)
T ss_dssp EEEEEEEEEEEEEECCSSCEEEEEEESEEEEECSSCE-EEEETT
T ss_pred EEEEECCCCcCCceeCCCcEEEEEEEeEEEEEECCEE-EEECCC
Confidence 3445566665543344467999999999998776542 344444
No 119
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=51.04 E-value=35 Score=22.17 Aligned_cols=43 Identities=9% Similarity=0.033 Sum_probs=28.4
Q ss_pred ccccccCCceeEecCCC-CCeEEEEEeeeEEEEeCCcEEEEeecc
Q psy17883 150 TMSHSAPGDLLYHTGES-IDSLCFIVTGSLEVIQDDEVVAILDLI 193 (195)
Q Consensus 150 ~~~~~~~g~~i~~~g~~-~~~~y~i~~G~v~v~~~~~~~~~l~~~ 193 (195)
....+.||..+-..-.. ..++++|++|++++..++. ...+..|
T Consensus 60 ~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~-~~~l~~G 103 (133)
T 1o4t_A 60 ARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDNGK-DVPIKAG 103 (133)
T ss_dssp EEEEECTTCEEEEEECCSEEEEEEEEESEEEEEETTE-EEEEETT
T ss_pred EEEEECCCCccCceECCCccEEEEEEeCEEEEEECCE-EEEeCCC
Confidence 34567888765433333 3699999999999977654 3445544
No 120
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=49.53 E-value=30 Score=22.01 Aligned_cols=42 Identities=12% Similarity=0.085 Sum_probs=26.0
Q ss_pred cccccCCceeEecCCCCCeEEEEEeeeEEEEeCCcEEEEeecc
Q psy17883 151 MSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILDLI 193 (195)
Q Consensus 151 ~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~ 193 (195)
...+.||...-..-....+++++++|+.++..++. ...+..|
T Consensus 38 ~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i~~~-~~~l~~G 79 (128)
T 4i4a_A 38 WCIVRPETKSFRHSHNEYELFIVIQGNAIIRINDE-DFPVTKG 79 (128)
T ss_dssp EEEECTTEECCCBCCSSEEEEEEEESEEEEEETTE-EEEEETT
T ss_pred EEEECCCCccCCEecCCeEEEEEEeCEEEEEECCE-EEEECCC
Confidence 34455666433333345699999999999887654 3344444
No 121
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=48.26 E-value=17 Score=23.60 Aligned_cols=29 Identities=7% Similarity=0.289 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhhCCCCH-----HHHHHHHHHHHH
Q psy17883 66 DMLNNVREFMKLHEVPK-----ALSERVMDYVVS 94 (195)
Q Consensus 66 ~~~~~l~~~l~~~~l~~-----~l~~rv~~y~~~ 94 (195)
-++.+++++++.+++|. +|.+||..|++.
T Consensus 40 LtVaELK~~cr~~GL~~sGkKaeLi~RI~~yl~~ 73 (114)
T 2rnn_A 40 LKVSELKDICRSVSFPVSGRKAVLQDLIRNFLQN 73 (114)
T ss_dssp CCHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCCcCCcHHHHHHHHHHHHHh
Confidence 35678999999999985 899999999875
No 122
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=48.10 E-value=37 Score=23.55 Aligned_cols=43 Identities=9% Similarity=-0.026 Sum_probs=28.1
Q ss_pred cccccCCceeEe--cCCCCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 151 MSHSAPGDLLYH--TGESIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 151 ~~~~~~g~~i~~--~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
...+.||...-. .....+++++|++|++++..++. ...+..|.
T Consensus 108 ~~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~~~~-~~~l~~GD 152 (192)
T 1y9q_A 108 EITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFFDEQ-WHELQQGE 152 (192)
T ss_dssp EEEECTTCEEEECCCSTTCEEEEEEEESCEEEEETTE-EEEECTTC
T ss_pred EEEECCCCCccCCCCCCCCEEEEEEEEeEEEEEECCE-EEEeCCCC
Confidence 345677776542 22334699999999999877543 34555553
No 123
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=46.97 E-value=23 Score=26.72 Aligned_cols=50 Identities=12% Similarity=0.012 Sum_probs=35.7
Q ss_pred HHhhhcccccccCCceeE-ecCCCCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 144 ALAMHFTMSHSAPGDLLY-HTGESIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 144 ~l~~~l~~~~~~~g~~i~-~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
.-..++....+.||..+= .+-....+-++|++|+..+..+++ ...+..|+
T Consensus 183 ~~d~~~~~~t~~PG~~~p~~e~H~~eh~~~vL~G~g~y~l~~~-~~~V~~GD 233 (266)
T 4e2q_A 183 AYDFNIHTMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYRLGDN-WYPVQAGD 233 (266)
T ss_dssp TCSEEEEEEEECTTCBCSSCCCCSCCEEEEEEECEEEEEETTE-EEEEETTC
T ss_pred ccceEEEEEEECCCcCcCCceEcccceEEEEEeceEEEEECCE-EEEecCCC
Confidence 345566788899999985 466667799999999987765443 45555554
No 124
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B
Probab=46.37 E-value=31 Score=21.61 Aligned_cols=57 Identities=5% Similarity=0.114 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcCCCCHhHHH--------hhCCHhHHHHHHHHHh
Q psy17883 64 YHDMLNNVREFMKLHEVPKALSERVMDYVVSTWAMTKGLDTDKVL--------NYCPKDMKADICVHLN 124 (195)
Q Consensus 64 ~~~~~~~l~~~l~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~~il--------~~lp~~L~~~i~~~~~ 124 (195)
+.+-.+.+..-|..-+=-+.++..+++..+-. ...+.++++ ...|.++|.++...+.
T Consensus 22 ~erL~~lL~~rL~EcGW~Devr~~~r~~i~~~----~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~~Ir 86 (96)
T 3mhs_B 22 YELISNELKARLLQEGWVDKVKDLTKSEMNIN----ESTNFTQILSTVEPKALEMVSDSTRETVLKQIR 86 (96)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH----TCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhc----CCCCHHHHHHHHhHHHHHHCCHHHHHHHHHHHH
Confidence 33333444444455555666666666666533 555666655 4567777777666554
No 125
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=44.88 E-value=30 Score=25.46 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=29.2
Q ss_pred ccccccCCceeEecCCCCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 150 TMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 150 ~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
....+.||...-..- .+++.+|++|++++..+++ ...+..|.
T Consensus 53 ~~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~~~~-~~~l~~Gd 94 (246)
T 1sfn_A 53 FTAEMPAGAQATESV--YQRFAFVLSGEVDVAVGGE-TRTLREYD 94 (246)
T ss_dssp EEEEECTTCEEECCS--SEEEEEEEEEEEEEECSSC-EEEECTTE
T ss_pred EEEEECCCCcCCCCc--eeEEEEEEECEEEEEECCE-EEEECCCC
Confidence 345567876654432 7789999999999987655 34566664
No 126
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=44.57 E-value=16 Score=20.40 Aligned_cols=28 Identities=14% Similarity=0.215 Sum_probs=21.6
Q ss_pred HHHHHHHHHhhCCCCH-----HHHHHHHHHHHH
Q psy17883 67 MLNNVREFMKLHEVPK-----ALSERVMDYVVS 94 (195)
Q Consensus 67 ~~~~l~~~l~~~~l~~-----~l~~rv~~y~~~ 94 (195)
++.+++++++.+++|. .|.+|++.|+.-
T Consensus 14 kV~eLK~~L~~rGL~~~G~KaeLieRL~~~l~~ 46 (55)
T 2do1_A 14 KLAELKQECLARGLETKGIKQDLIHRLQAYLEE 46 (55)
T ss_dssp CHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhc
Confidence 4567888898888874 788888888753
No 127
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=44.01 E-value=23 Score=21.19 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=22.4
Q ss_pred HHHHHHHHHhhCCCCH-----HHHHHHHHHHHH
Q psy17883 67 MLNNVREFMKLHEVPK-----ALSERVMDYVVS 94 (195)
Q Consensus 67 ~~~~l~~~l~~~~l~~-----~l~~rv~~y~~~ 94 (195)
++.++++.++.+++|. +|.+|++.|.+.
T Consensus 30 kVaeLK~eLk~RGL~~sG~KaeLIeRL~~~~~~ 62 (75)
T 2kvu_A 30 KVAELKQELKLRSLPVSGTKTELIERLRAYQDQ 62 (75)
T ss_dssp CHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 4568899999999984 788888888653
No 128
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=43.28 E-value=11 Score=20.22 Aligned_cols=18 Identities=22% Similarity=0.468 Sum_probs=13.9
Q ss_pred HhHHHhhCCHhHHHHHHH
Q psy17883 104 TDKVLNYCPKDMKADICV 121 (195)
Q Consensus 104 ~~~il~~lp~~L~~~i~~ 121 (195)
+.++++.||..++.++..
T Consensus 17 D~eVF~~LP~dIQ~Ells 34 (48)
T 2kwv_A 17 DQEVFKQLPADIQEEILS 34 (48)
T ss_dssp CGGGTTTSCHHHHHHHTT
T ss_pred CHHHHHHCcHHHHHHHHh
Confidence 346899999998888754
No 129
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=42.49 E-value=37 Score=25.88 Aligned_cols=44 Identities=18% Similarity=0.120 Sum_probs=30.3
Q ss_pred ccccccCCceeEecCCC-CCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 150 TMSHSAPGDLLYHTGES-IDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 150 ~~~~~~~g~~i~~~g~~-~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
......||...-..-.. .+++++|++|++++..+++ ...+..|.
T Consensus 49 ~~~~~~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~-~~~l~~Gd 93 (337)
T 1y3t_A 49 VLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTLDGE-RYLLISGD 93 (337)
T ss_dssp EEEEECTTCEEEEEECTTCCEEEEEEESCEEEEETTE-EEEECTTC
T ss_pred EEEEeCCCCCCCceeCCCceEEEEEEECEEEEEECCE-EEEECCCC
Confidence 34456788766433334 7899999999999987543 45666664
No 130
>2lh0_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; NMR {Saccharomyces cerevisiae}
Probab=42.08 E-value=17 Score=21.42 Aligned_cols=16 Identities=19% Similarity=0.297 Sum_probs=11.9
Q ss_pred HHhhCCHhHHHHHHHH
Q psy17883 107 VLNYCPKDMKADICVH 122 (195)
Q Consensus 107 il~~lp~~L~~~i~~~ 122 (195)
.++.||++|+.+|..-
T Consensus 8 wL~~LP~~Lq~kV~aI 23 (70)
T 2lh0_A 8 FLDELPESLSRKIGTV 23 (70)
T ss_dssp GGGGSCHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHH
Confidence 6788888888877643
No 131
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=41.95 E-value=34 Score=25.77 Aligned_cols=48 Identities=10% Similarity=0.144 Sum_probs=34.1
Q ss_pred hhhcccccccCCceeEe-cCCCCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 146 AMHFTMSHSAPGDLLYH-TGESIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 146 ~~~l~~~~~~~g~~i~~-~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
-..+....+.||..|-. +.....+.++|++|+..+..++ ....+..|+
T Consensus 190 ~~~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~~~-~~~~v~~GD 238 (278)
T 1sq4_A 190 DMHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRLNQ-DWVEVEAGD 238 (278)
T ss_dssp SEEEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEETT-EEEEEETTC
T ss_pred CeEEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEECC-EEEEeCCCC
Confidence 35566778899998875 4444458899999999987654 345555554
No 132
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=41.90 E-value=7.5 Score=24.28 Aligned_cols=38 Identities=18% Similarity=0.310 Sum_probs=27.1
Q ss_pred cccccccCCceeEecCCCCC-eEEEEEeeeEEEEeCCcE
Q psy17883 149 FTMSHSAPGDLLYHTGESID-SLCFIVTGSLEVIQDDEV 186 (195)
Q Consensus 149 l~~~~~~~g~~i~~~g~~~~-~~y~i~~G~v~v~~~~~~ 186 (195)
.+...+.||+-+=.+-...+ ..|+|.+|++.+..+++.
T Consensus 19 V~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~~d~~ 57 (98)
T 3lag_A 19 VTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVAPDGT 57 (98)
T ss_dssp EEEEEECTTEECCSEECCSCEEEEESSCBC-CEECTTSC
T ss_pred EEEEEECCCCccCcEECCCcEEEEEEeccEEEEEeCCCc
Confidence 45567889988875555544 788899999999876643
No 133
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=41.77 E-value=35 Score=24.92 Aligned_cols=43 Identities=5% Similarity=0.081 Sum_probs=29.8
Q ss_pred cccccC-CceeEecCCCCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 151 MSHSAP-GDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 151 ~~~~~~-g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
...+.| |..+-..-....+++++++|++++..+++. ..+..|.
T Consensus 149 ~~~~~p~g~~~~~H~H~~~e~~~Vl~G~~~~~i~~~~-~~l~~Gd 192 (243)
T 3h7j_A 149 LAKIPGNGGEMPFHKHRNEQIGICIGGGYDMTVEGCT-VEMKFGT 192 (243)
T ss_dssp EEEECTTTEEEEEECCSSEEEEEECSSCEEEEETTEE-EEECTTC
T ss_pred EEEECCCCCcCCCEeCCCcEEEEEEECEEEEEECCEE-EEECCCC
Confidence 344778 776655555567999999999999877653 3455553
No 134
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=41.28 E-value=48 Score=23.39 Aligned_cols=47 Identities=13% Similarity=0.012 Sum_probs=31.0
Q ss_pred hcccccccCCceeEecCCC-CCeEEEEEeeeEEEEeC-C----cE--EEEeeccc
Q psy17883 148 HFTMSHSAPGDLLYHTGES-IDSLCFIVTGSLEVIQD-D----EV--VAILDLIW 194 (195)
Q Consensus 148 ~l~~~~~~~g~~i~~~g~~-~~~~y~i~~G~v~v~~~-~----~~--~~~l~~~~ 194 (195)
.+....+.||...-..-.. .++++++++|++.+... + +. ...+..|.
T Consensus 73 ~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD 127 (201)
T 1fi2_A 73 SMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGE 127 (201)
T ss_dssp EEEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTC
T ss_pred EEEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCC
Confidence 3455677888866544344 57999999999998542 2 22 55666663
No 135
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=41.25 E-value=40 Score=22.31 Aligned_cols=45 Identities=11% Similarity=-0.054 Sum_probs=28.4
Q ss_pred ccccccCCceeEecCC-CCCeEEEEEeeeEEEEeCCcE-----EEEeeccc
Q psy17883 150 TMSHSAPGDLLYHTGE-SIDSLCFIVTGSLEVIQDDEV-----VAILDLIW 194 (195)
Q Consensus 150 ~~~~~~~g~~i~~~g~-~~~~~y~i~~G~v~v~~~~~~-----~~~l~~~~ 194 (195)
....+.||..+-..-. ..+++++|++|++.+..++.. ...+..|.
T Consensus 46 ~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~~~~~~~l~~Gd 96 (148)
T 2oa2_A 46 TLMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDNLHFQEEVFDDY 96 (148)
T ss_dssp EEEEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTBCCEEEEEETTC
T ss_pred EEEEECCCCccCceECCCCcEEEEEEeCEEEEEECCccccceeeEEECCCC
Confidence 3445677775533222 345999999999999876553 14555553
No 136
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=41.24 E-value=26 Score=28.20 Aligned_cols=48 Identities=19% Similarity=0.162 Sum_probs=34.3
Q ss_pred hhcccccccCCceeEecCCCCCeEEEEEeeeEEEEe--C-CcEEEEeeccc
Q psy17883 147 MHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQ--D-DEVVAILDLIW 194 (195)
Q Consensus 147 ~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~--~-~~~~~~l~~~~ 194 (195)
..+....+.||..+-......+++++|++|+..+.. + +.....+..|+
T Consensus 49 ~s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~~~~l~~GD 99 (416)
T 1uij_A 49 YRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRDSYNLHPGD 99 (416)
T ss_dssp CEEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCEEEEEECTTE
T ss_pred EEEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEECCCCeEEEecCCC
Confidence 456678889999877665567799999999998753 2 33455555553
No 137
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=40.74 E-value=31 Score=26.96 Aligned_cols=38 Identities=11% Similarity=-0.198 Sum_probs=28.7
Q ss_pred CceeEecCCCCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 157 GDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 157 g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
|+.+-.-....+.+++|++|++++..++.....+..|.
T Consensus 262 g~~~~~h~~~~~~~~~vleG~~~i~i~g~~~~~l~~Gd 299 (350)
T 1juh_A 262 TVTVPTWSFPGACAFQVQEGRVVVQIGDYAATELGSGD 299 (350)
T ss_dssp TSCCCCBCCSSCEEEEEEESCEEEEETTSCCEEECTTC
T ss_pred CCCCCcccCCCcEEEEEEeeEEEEEECCeEEEEeCCCC
Confidence 55666666778899999999999998874455666653
No 138
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=40.01 E-value=26 Score=22.84 Aligned_cols=41 Identities=7% Similarity=0.055 Sum_probs=24.4
Q ss_pred cccCCceeEecCCCCCeEEEEEeeeEEEE--eCCcEEEEeeccc
Q psy17883 153 HSAPGDLLYHTGESIDSLCFIVTGSLEVI--QDDEVVAILDLIW 194 (195)
Q Consensus 153 ~~~~g~~i~~~g~~~~~~y~i~~G~v~v~--~~~~~~~~l~~~~ 194 (195)
.+.||..+-..-....+++++++|++++. .++ ....+..|.
T Consensus 45 ~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~~-~~~~l~~Gd 87 (145)
T 3ht1_A 45 EVSPNGSTPPHFHEWEHEIYVLEGSMGLVLPDQG-RTEEVGPGE 87 (145)
T ss_dssp EEEEEEECCCEECSSCEEEEEEEECEEEEEGGGT-EEEEECTTC
T ss_pred EECCCCcCCCccCCCceEEEEEEeEEEEEEeECC-EEEEECCCC
Confidence 44565544333333556678999999998 544 344555553
No 139
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=39.76 E-value=49 Score=20.95 Aligned_cols=43 Identities=19% Similarity=0.183 Sum_probs=25.1
Q ss_pred ccccccCCceeE--ecCCCCCeEEEEEeeeEEEEeCCcEEEEeecc
Q psy17883 150 TMSHSAPGDLLY--HTGESIDSLCFIVTGSLEVIQDDEVVAILDLI 193 (195)
Q Consensus 150 ~~~~~~~g~~i~--~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~ 193 (195)
....+.||..+- ...+....+|++++|++++..++.. ..+..|
T Consensus 29 ~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i~~~~-~~l~~G 73 (125)
T 3cew_A 29 SINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITIDGEK-IELQAG 73 (125)
T ss_dssp EEEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEETTEE-EEEETT
T ss_pred EEEEECCCCCCCCCccCCCceEEEEEEeCEEEEEECCEE-EEeCCC
Confidence 344566776552 2333334577799999998776542 344444
No 140
>3or8_A Transcription elongation factor SPT6; SH2, CTD binding; HET: MES; 1.60A {Candida glabrata} PDB: 3pjp_A* 3psj_A* 3psk_A 2l3t_A 3gxw_A 3gxx_A
Probab=39.27 E-value=47 Score=23.80 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=29.9
Q ss_pred cCCccccCChHHHHHHhhhcccccccCCceeEecCCCCC-eEEE
Q psy17883 130 EHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESID-SLCF 172 (195)
Q Consensus 130 ~~~~f~~~~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~-~~y~ 172 (195)
+.|.|++++-...++.+.. -..||.|+|....+. ++-+
T Consensus 7 ~HP~F~n~~~~qAe~~L~~-----~~~Ge~iIRPSSkg~dhLtv 45 (197)
T 3or8_A 7 NHPYYFPFNGKQAEDYLRS-----KERGDFVIRQSSRGDDHLAI 45 (197)
T ss_dssp CCTTEECCCHHHHHHHHTT-----SCTTCEEEEECSSCTTEEEE
T ss_pred CCCCcCCCCHHHHHHHHhc-----CCCCCEEEeeCCCCCCcEEE
Confidence 6799999998888887765 268999999998864 4444
No 141
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=39.25 E-value=32 Score=24.23 Aligned_cols=21 Identities=14% Similarity=0.075 Sum_probs=16.2
Q ss_pred CCCCCeEEEEEeeeEEEEeCC
Q psy17883 164 GESIDSLCFIVTGSLEVIQDD 184 (195)
Q Consensus 164 g~~~~~~y~i~~G~v~v~~~~ 184 (195)
-+..++++++++|+..+-..+
T Consensus 51 ~~~~eE~Fy~lkG~m~l~v~d 71 (176)
T 1zvf_A 51 INPTPEWFYQKKGSMLLKVVD 71 (176)
T ss_dssp ECSSCEEEEEEESCEEEEEEE
T ss_pred CCCCceEEEEEeCEEEEEEEc
Confidence 345679999999999986543
No 142
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=38.89 E-value=59 Score=25.12 Aligned_cols=46 Identities=11% Similarity=0.094 Sum_probs=30.8
Q ss_pred cccccccCCceeEecCCC-CCeEEEEEeeeEEEEe---CCc-EEEEeeccc
Q psy17883 149 FTMSHSAPGDLLYHTGES-IDSLCFIVTGSLEVIQ---DDE-VVAILDLIW 194 (195)
Q Consensus 149 l~~~~~~~g~~i~~~g~~-~~~~y~i~~G~v~v~~---~~~-~~~~l~~~~ 194 (195)
+....+.||...-..-.. .+++++|++|++.+.. ++. ....+..|+
T Consensus 54 ~~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~~~~l~~GD 104 (361)
T 2vqa_A 54 GVYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVEIADVDKGG 104 (361)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEEEEEEETTE
T ss_pred eEEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEEEEEEcCCC
Confidence 345556788865443334 7899999999998865 332 456777664
No 143
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=38.86 E-value=17 Score=25.91 Aligned_cols=32 Identities=13% Similarity=0.171 Sum_probs=27.9
Q ss_pred hcccccccCCceeEecCCCCCeEEEEEeeeEE
Q psy17883 148 HFTMSHSAPGDLLYHTGESIDSLCFIVTGSLE 179 (195)
Q Consensus 148 ~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~ 179 (195)
.+....+.||..+-.....+.++.+|++|..+
T Consensus 126 ~v~l~~~~pG~~~p~H~H~g~E~~~VL~G~f~ 157 (195)
T 2q1z_B 126 IARLLWIPGGQAVPDHGHRGLELTLVLQGAFR 157 (195)
T ss_dssp EEEEEEECTTCBCCCCCCSSCEEEEEEESEEE
T ss_pred EEEEEEECCCCCCCCcCCCCeEEEEEEEEEEE
Confidence 45678889999999888889999999999976
No 144
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=38.33 E-value=60 Score=25.09 Aligned_cols=46 Identities=15% Similarity=0.200 Sum_probs=31.4
Q ss_pred cccccccCCceeEecCCCC-CeEEEEEeeeEEEEe---CCc-EEEEeeccc
Q psy17883 149 FTMSHSAPGDLLYHTGESI-DSLCFIVTGSLEVIQ---DDE-VVAILDLIW 194 (195)
Q Consensus 149 l~~~~~~~g~~i~~~g~~~-~~~y~i~~G~v~v~~---~~~-~~~~l~~~~ 194 (195)
+....+.||..+-..-... +++++|++|++.+.- ++. ....+..|.
T Consensus 236 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~~~~~l~~GD 286 (361)
T 2vqa_A 236 GALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGKASVSRLQQGD 286 (361)
T ss_dssp EEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTCEEEEEECTTC
T ss_pred EEEEEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCcEEEEEECCCC
Confidence 4556678888765444444 899999999999865 333 255666664
No 145
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=38.06 E-value=56 Score=24.33 Aligned_cols=45 Identities=11% Similarity=0.020 Sum_probs=30.7
Q ss_pred cccccccCCceeEe-cCCCCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 149 FTMSHSAPGDLLYH-TGESIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 149 l~~~~~~~g~~i~~-~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
+....+.||..+-. .-...+++++|++|+..+..+++ ...+..|.
T Consensus 184 ~~~~~l~pg~~~~~~H~H~~~E~~yVl~G~~~~~i~~~-~~~l~~GD 229 (274)
T 1sef_A 184 MHILSFEPGASHAYIETHVQEHGAYLISGQGMYNLDNE-WYPVEKGD 229 (274)
T ss_dssp EEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEETTE-EEEEETTC
T ss_pred EEEEEECCCCccCcceeccCeEEEEEEeCEEEEEECCE-EEEECCCC
Confidence 44556788876643 33456799999999999987654 34555554
No 146
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=37.70 E-value=20 Score=26.99 Aligned_cols=44 Identities=16% Similarity=0.189 Sum_probs=28.8
Q ss_pred ccccccCCceeE--ecCCCCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 150 TMSHSAPGDLLY--HTGESIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 150 ~~~~~~~g~~i~--~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
....+.||...- ......+++++|++|++++..+++ ...+..|+
T Consensus 71 ~~~~l~PG~~~~~~~h~H~~eE~~~Vl~G~l~v~v~g~-~~~L~~GD 116 (278)
T 1sq4_A 71 YIVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTLQGQ-VHAMQPGG 116 (278)
T ss_dssp EEEEEEEEEEESSCCCCTTEEEEEEEEESCEEEEESSC-EEEECTTE
T ss_pred EEEEECCCCccCCCCcCCCceEEEEEEeCEEEEEECCE-EEEECCCC
Confidence 344556776651 122336799999999999987754 34566654
No 147
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=37.47 E-value=28 Score=27.62 Aligned_cols=47 Identities=11% Similarity=-0.032 Sum_probs=31.0
Q ss_pred hcccccccCCceeEecCCCCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 148 HFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 148 ~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
.+....+.||+.+-..-....++|||++|+-..+.-++....+..|+
T Consensus 104 ~a~~~~l~PG~~~~~HrH~~~ev~~VleG~G~~~~vdG~~~~~~~GD 150 (368)
T 3nw4_A 104 WAAIQYLGPRETAPEHRHSQNAFRFVVEGEGVWTVVNGDPVRMSRGD 150 (368)
T ss_dssp EEEEEEECTTCEEEEEEESSCEEEECSSCEEEEEEETTEEEEEETTC
T ss_pred EEEEEEECCCCccCceecccceEEEEEecceEEEEECCEEEEEeCCC
Confidence 34556789999887555567799999999975233333444555443
No 148
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=35.41 E-value=27 Score=27.40 Aligned_cols=46 Identities=17% Similarity=0.107 Sum_probs=29.3
Q ss_pred cccccccCCceeEecCCCCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 149 FTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 149 l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
+....+.||...-..-....++++|++|+..+..-++....+..|.
T Consensus 102 ~~~~~l~PG~~~~~H~H~~~e~~yVl~G~g~~t~v~g~~~~l~~GD 147 (354)
T 2d40_A 102 AGLQLIMPGEVAPSHRHNQSALRFIVEGKGAFTAVDGERTPMNEGD 147 (354)
T ss_dssp EEEEEECTTCEEEEEEESSCEEEEEEECSSCEEEETTEEEECCTTC
T ss_pred EEEEEECCCCCcCCeecCcceEEEEEEEEEEEEEECCEEEEEcCCC
Confidence 3455678888764333356799999999987722233445555553
No 149
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=35.22 E-value=39 Score=27.50 Aligned_cols=48 Identities=21% Similarity=0.156 Sum_probs=34.3
Q ss_pred hhcccccccCCceeEecCCCCCeEEEEEeeeEEEEe--CC-cEEEEeeccc
Q psy17883 147 MHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQ--DD-EVVAILDLIW 194 (195)
Q Consensus 147 ~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~--~~-~~~~~l~~~~ 194 (195)
..+....+.||..+-..-..++++++|++|++.+.. ++ .....+..|+
T Consensus 86 ~s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~~~~l~~GD 136 (445)
T 2cav_A 86 YRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGD 136 (445)
T ss_dssp EEEEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEEEEEEEETTE
T ss_pred EEEEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCCEEEEecCCC
Confidence 556677889998877665567799999999987752 33 3455666553
No 150
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=33.45 E-value=72 Score=24.94 Aligned_cols=46 Identities=11% Similarity=0.009 Sum_probs=30.6
Q ss_pred cccccccCCceeEecCCCCCeEEEEEeeeEEEEe---CCcE-EEEeeccc
Q psy17883 149 FTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQ---DDEV-VAILDLIW 194 (195)
Q Consensus 149 l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~---~~~~-~~~l~~~~ 194 (195)
+....+.||...-..-....+++++++|++++.. ++.. ...+..|.
T Consensus 81 ~~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~~~~~l~~GD 130 (385)
T 1j58_A 81 SVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGD 130 (385)
T ss_dssp EEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEEEEEEETTE
T ss_pred EEEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcEEEEEeCCCC
Confidence 4455668888664333347899999999999876 2332 34676664
No 151
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=33.42 E-value=44 Score=24.64 Aligned_cols=45 Identities=13% Similarity=-0.003 Sum_probs=30.2
Q ss_pred cccccccCCceeEecC-CCCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 149 FTMSHSAPGDLLYHTG-ESIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 149 l~~~~~~~g~~i~~~g-~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
+....+.||..+-..- ...+++++|++|++++..++. ...+..|.
T Consensus 181 ~~~~~~~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~-~~~l~~GD 226 (261)
T 1rc6_A 181 MHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNN-WIPVKKGD 226 (261)
T ss_dssp EEEEEECTTCCBEEEEEESSCEEEEEEESEEEEESSSC-EEEEETTC
T ss_pred EEEEEECCCCccCcccCCCceEEEEEEEeEEEEEECCE-EEEeCCCC
Confidence 4566778887654332 235789999999999876643 34555553
No 152
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=32.40 E-value=45 Score=18.12 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhCCCCH-----HHHHHHHHHH
Q psy17883 67 MLNNVREFMKLHEVPK-----ALSERVMDYV 92 (195)
Q Consensus 67 ~~~~l~~~l~~~~l~~-----~l~~rv~~y~ 92 (195)
++.++++.++.+++|. .|.+|+.+++
T Consensus 14 kV~eLK~eLk~RgL~~~G~Ka~Li~RL~~~~ 44 (50)
T 1zrj_A 14 KVNELREELQRRGLDTRGLKAELAERLQAAL 44 (50)
T ss_dssp CHHHHHHHHHHTTCCCCSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCCcHHHHHHHHHHHH
Confidence 4567888999998884 6777777665
No 153
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=30.40 E-value=40 Score=27.01 Aligned_cols=43 Identities=12% Similarity=-0.005 Sum_probs=28.9
Q ss_pred ccccccCCceeEecCCCCCeEEEEEeeeEEEEeCCcEEEEeecc
Q psy17883 150 TMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILDLI 193 (195)
Q Consensus 150 ~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~~~~l~~~ 193 (195)
....+.||+..-..-...+++|+|++|+..+..++ ....+..|
T Consensus 297 ~~~~l~PG~~~~~HrH~~~~v~~VleG~G~~~V~g-e~~~~~~G 339 (394)
T 3bu7_A 297 SMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSIVGG-KRFDWSEH 339 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECCEEEEETT-EEEEECTT
T ss_pred EEEEECCCCcCCCcccCCcEEEEEEeCeEEEEECC-EEEEEeCC
Confidence 45566788877655555678999999998766543 34444444
No 154
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=30.06 E-value=81 Score=24.63 Aligned_cols=46 Identities=9% Similarity=-0.020 Sum_probs=30.6
Q ss_pred cccccccCCceeEecCCCC-CeEEEEEeeeEEEEeC--C--cEEEEeeccc
Q psy17883 149 FTMSHSAPGDLLYHTGESI-DSLCFIVTGSLEVIQD--D--EVVAILDLIW 194 (195)
Q Consensus 149 l~~~~~~~g~~i~~~g~~~-~~~y~i~~G~v~v~~~--~--~~~~~l~~~~ 194 (195)
+....+.||...-..-... +++++|++|++.+... + +....+..|.
T Consensus 259 ~~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD 309 (385)
T 1j58_A 259 SALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGD 309 (385)
T ss_dssp EEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEEEEEEESSC
T ss_pred EEEEEECCCcccCceeCCCCCEEEEEEeCeEEEEEEcCCCcEEEEEEcCCC
Confidence 4445667887765444455 8999999999987643 2 2455666664
No 155
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=29.87 E-value=49 Score=23.20 Aligned_cols=28 Identities=11% Similarity=-0.044 Sum_probs=19.7
Q ss_pred CCCeEEEEEeeeEEEEeCC-c--EEEEeecc
Q psy17883 166 SIDSLCFIVTGSLEVIQDD-E--VVAILDLI 193 (195)
Q Consensus 166 ~~~~~y~i~~G~v~v~~~~-~--~~~~l~~~ 193 (195)
+.++++++++|+..+-..+ + ....+..|
T Consensus 54 ~~dE~FyvlkG~m~i~v~d~g~~~~v~l~eG 84 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWVDGRRERADLKEG 84 (174)
T ss_dssp SSCEEEEEEESCEEEEEEETTEEEEEEECTT
T ss_pred CCceEEEEEeeEEEEEEEcCCceeeEEECCC
Confidence 4679999999999986543 2 24455555
No 156
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=29.69 E-value=70 Score=19.02 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=18.2
Q ss_pred CCeEEEEEeeeEEEEeCCcEEEEeecc
Q psy17883 167 IDSLCFIVTGSLEVIQDDEVVAILDLI 193 (195)
Q Consensus 167 ~~~~y~i~~G~v~v~~~~~~~~~l~~~ 193 (195)
..+++++.+|++.+..++. ...+..|
T Consensus 50 ~~e~~~v~~G~~~~~~~~~-~~~l~~G 75 (102)
T 3d82_A 50 TDEVFIVMEGTLQIAFRDQ-NITLQAG 75 (102)
T ss_dssp CCEEEEEEESEEEEECSSC-EEEEETT
T ss_pred CcEEEEEEeCEEEEEECCE-EEEEcCC
Confidence 3799999999999876554 2334443
No 157
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=29.64 E-value=47 Score=24.48 Aligned_cols=43 Identities=12% Similarity=0.189 Sum_probs=28.0
Q ss_pred cccccCCceeEec-C-CCCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 151 MSHSAPGDLLYHT-G-ESIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 151 ~~~~~~g~~i~~~-g-~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
...+.||...-.. . ...+++.+|++|++++..+++ ...|..|+
T Consensus 63 ~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~~~~-~~~L~~Gd 107 (261)
T 1rc6_A 63 LVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEGK-TFALSEGG 107 (261)
T ss_dssp EEEEEEEEEESSCSCCTTEEEEEEEEESEEEEEETTE-EEEEETTE
T ss_pred EEEEcCCCccCCCCCCCCceEEEEEEEeEEEEEECCE-EEEECCCC
Confidence 4455677654322 1 224689999999999987654 45666664
No 158
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=27.70 E-value=1.5e+02 Score=20.51 Aligned_cols=58 Identities=12% Similarity=0.202 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhc--CCCCHhHHH----------hhCCHhHHH
Q psy17883 60 ATAKYHDMLNNVREFMKLHEVPKALSERVMDYVVSTWAMT--KGLDTDKVL----------NYCPKDMKA 117 (195)
Q Consensus 60 ~~~~~~~~~~~l~~~l~~~~l~~~l~~rv~~y~~~~~~~~--~~~~~~~il----------~~lp~~L~~ 117 (195)
++....+-.+.+.++...-++|+...+....+|+.....+ ++.+.+.+. ++.|..+++
T Consensus 5 ~er~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~~l~d 74 (200)
T 1ais_B 5 AERNLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDE 74 (200)
T ss_dssp ---CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 3445567777888888889999999999999998776554 233433222 456777764
No 159
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=27.67 E-value=67 Score=25.99 Aligned_cols=48 Identities=21% Similarity=0.194 Sum_probs=34.9
Q ss_pred hhcccccccCCceeEecCCCCCeEEEEEeeeEEEEe--CC-cEEEEeeccc
Q psy17883 147 MHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQ--DD-EVVAILDLIW 194 (195)
Q Consensus 147 ~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~--~~-~~~~~l~~~~ 194 (195)
..+....+.||..+-..-...+++++|++|+..+.. ++ .....+..|+
T Consensus 61 ~s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~~~~~~l~~GD 111 (434)
T 2ea7_A 61 YRVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDSRDSYILEQGH 111 (434)
T ss_dssp CEEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEEEEEEETTE
T ss_pred EEEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCCCEEEEeCCCC
Confidence 566778889999888776567799999999988743 32 3455565553
No 160
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Probab=26.88 E-value=61 Score=22.68 Aligned_cols=45 Identities=9% Similarity=0.009 Sum_probs=27.1
Q ss_pred ccccccCCcee------E-ecCC--CCCeEEEEEeeeEEEEeCCcE----EEEeeccc
Q psy17883 150 TMSHSAPGDLL------Y-HTGE--SIDSLCFIVTGSLEVIQDDEV----VAILDLIW 194 (195)
Q Consensus 150 ~~~~~~~g~~i------~-~~g~--~~~~~y~i~~G~v~v~~~~~~----~~~l~~~~ 194 (195)
....+.||... - .... ..+++++|++|+..+..++.. ...+..|.
T Consensus 70 ~~~~l~PG~~~~E~~~~~~H~H~~~~~~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD 127 (190)
T 1x82_A 70 ATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGT 127 (190)
T ss_dssp EEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEEECTTCCEEEEEECTTC
T ss_pred EEEEECCCcCCCcccCCCCeECCCCCCCEEEEEEcCEEEEEEcCcCCcEEEEEECCCc
Confidence 33467788661 1 1111 236999999999999765532 24555553
No 161
>3jv1_A P22 protein; MAM33 family, hydrolase; 2.00A {Trypanosoma brucei} SCOP: d.25.1.0
Probab=26.13 E-value=1.2e+02 Score=21.14 Aligned_cols=30 Identities=7% Similarity=0.242 Sum_probs=22.8
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy17883 67 MLNNVREFMKLHEVPKALSERVMDYVVSTW 96 (195)
Q Consensus 67 ~~~~l~~~l~~~~l~~~l~~rv~~y~~~~~ 96 (195)
-.+.+.+||..|+++..+..-+..|...+-
T Consensus 137 Lq~~l~~yLeeRGI~~~la~fl~~y~~~KE 166 (182)
T 3jv1_A 137 LVDSFTSYLSARGVNDTLANFIDQFSLWSE 166 (182)
T ss_dssp HHHHHHHHHHTTTCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 345778888888888888888888776653
No 162
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=25.76 E-value=83 Score=16.76 Aligned_cols=29 Identities=14% Similarity=0.276 Sum_probs=21.3
Q ss_pred ccCCchhHHHHHHHHHHHHHHH-HHHHHHH
Q psy17883 22 AAETDNEKIFTICMMIIAALLY-ATIFGHV 50 (195)
Q Consensus 22 ~p~t~~e~~~~i~~~~~g~~~~-a~~i~~i 50 (195)
.|.+..|..+.+..++.+.+.- +++++++
T Consensus 8 ~~~s~~E~aigl~v~f~~~L~PagWVLshL 37 (46)
T 1v54_M 8 TPTSPKEQAIGLSVTFLSFLLPAGWVLYHL 37 (46)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred CCCCHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4777889988888887777766 6666554
No 163
>2kvs_A Uncharacterized protein MW0776; PSI-2, NESG, BIG target, structural genomics, protein structure initiative; NMR {Staphylococcus aureus}
Probab=25.74 E-value=1.1e+02 Score=18.40 Aligned_cols=28 Identities=11% Similarity=0.059 Sum_probs=19.9
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy17883 68 LNNVREFMKLHEVPKALSERVMDYVVST 95 (195)
Q Consensus 68 ~~~l~~~l~~~~l~~~l~~rv~~y~~~~ 95 (195)
.+++.+|+.....++++.+-+++-+...
T Consensus 42 ~~eIs~Yle~~~~~~~~~e~vkralsly 69 (80)
T 2kvs_A 42 HQVIRAYVMSNYTDHQLIETTNRAISLY 69 (80)
T ss_dssp SHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3567777777777777777777666654
No 164
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=24.99 E-value=54 Score=24.41 Aligned_cols=43 Identities=19% Similarity=0.280 Sum_probs=27.8
Q ss_pred cccccCCceeEec-C-CCCCeEEEEEeeeEEEEeCCcEEEEeeccc
Q psy17883 151 MSHSAPGDLLYHT-G-ESIDSLCFIVTGSLEVIQDDEVVAILDLIW 194 (195)
Q Consensus 151 ~~~~~~g~~i~~~-g-~~~~~~y~i~~G~v~v~~~~~~~~~l~~~~ 194 (195)
...+.||...-.. . ...+++.+|++|++++..+++ ...|..|+
T Consensus 66 ~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~~~~-~~~L~~GD 110 (274)
T 1sef_A 66 IATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSDGQE-THELEAGG 110 (274)
T ss_dssp EEEEEEEEEECSCSSBTTEEEEEEEEESEEEEECSSC-EEEEETTE
T ss_pred EEEECCCCcCCCCCCCCCceEEEEEEEeEEEEEECCE-EEEECCCC
Confidence 4455777654322 1 224689999999999987654 45666664
No 165
>1yqf_A Hypothetical protein LMAJ011689; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.30A {Leishmania major} SCOP: d.25.1.1
Probab=24.30 E-value=1.3e+02 Score=21.35 Aligned_cols=28 Identities=29% Similarity=0.333 Sum_probs=21.5
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy17883 68 LNNVREFMKLHEVPKALSERVMDYVVST 95 (195)
Q Consensus 68 ~~~l~~~l~~~~l~~~l~~rv~~y~~~~ 95 (195)
.+.+.+||..++++..+..-+..|...+
T Consensus 159 q~~l~~YLeeRGI~~~la~fl~~y~~~K 186 (203)
T 1yqf_A 159 LNCVMTYLEKRGVDEKLGEFVVLYSFWA 186 (203)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3567888888888888888888777654
No 166
>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural genomics, unknown function, DNA binding protein, NPPSFA; 1.90A {Homo sapiens} SCOP: a.273.1.1
Probab=24.14 E-value=1.1e+02 Score=17.51 Aligned_cols=35 Identities=11% Similarity=0.273 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHhh-CCCCHH--HHHHHHHHHHHHH
Q psy17883 62 AKYHDMLNNVREFMKL-HEVPKA--LSERVMDYVVSTW 96 (195)
Q Consensus 62 ~~~~~~~~~l~~~l~~-~~l~~~--l~~rv~~y~~~~~ 96 (195)
.-|.+-+.++..||.. .+++.. ++.|+.+++....
T Consensus 22 ~Gf~eC~~EV~rfLs~~eg~d~~d~~r~rLl~HL~~~~ 59 (64)
T 2db7_A 22 LGFRECLAEVARYLSIIEGLDASDPLRVRLVSHLNNYA 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCTTCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHh
Confidence 4889999999999987 456655 9999999987544
No 167
>2efe_A Similarity to vacuolar protein sorting-associated VPS9; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_A 2efc_A* 2efh_A*
Probab=23.76 E-value=60 Score=24.24 Aligned_cols=16 Identities=13% Similarity=0.154 Sum_probs=9.6
Q ss_pred CHHHHHHHHHHHHHHH
Q psy17883 81 PKALSERVMDYVVSTW 96 (195)
Q Consensus 81 ~~~l~~rv~~y~~~~~ 96 (195)
|+...+.+++|++...
T Consensus 45 ~~e~~~~v~~f~~~~~ 60 (267)
T 2efe_A 45 PEKDCAMVQEFFSKME 60 (267)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4455666777776543
No 168
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=23.03 E-value=66 Score=15.68 Aligned_cols=14 Identities=36% Similarity=0.541 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHH
Q psy17883 33 ICMMIIAALLYATI 46 (195)
Q Consensus 33 i~~~~~g~~~~a~~ 46 (195)
++++.+|+++||..
T Consensus 9 ll~~tlgiiFFAI~ 22 (32)
T 3arc_T 9 IFACIIALFFFAIF 22 (32)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh
Confidence 34445566666654
No 169
>4b8b_A General negative regulator of transcription subun; 2.80A {Saccharomyces cerevisiae S288C}
Probab=22.83 E-value=2.7e+02 Score=23.68 Aligned_cols=66 Identities=9% Similarity=0.168 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCHhHHHhhC------CHhHHHHHHHHHhHHHhhcCCccccCChHHHHHHh
Q psy17883 79 EVPKALSERVMDYVVSTWAMTKGLDTDKVLNYC------PKDMKADICVHLNRKVFNEHPAFRLASDGCLRALA 146 (195)
Q Consensus 79 ~l~~~l~~rv~~y~~~~~~~~~~~~~~~il~~l------p~~L~~~i~~~~~~~~l~~~~~f~~~~~~~l~~l~ 146 (195)
..|++..+++.+||+-.|..+- ..+++++.| +..--+++..-+...++..+.+|...|...++..+
T Consensus 442 ~~~~dIE~ean~yfqkmY~~ei--sI~~iV~~L~~~K~S~~~rdqdvFaCMIh~LFdEyrff~~YP~~eL~iTA 513 (603)
T 4b8b_A 442 GINNDIEKEMQNYLQKMYSGEL--AIKDVIELLRRLRDSDLPRDQEVFTCITHAVIAESTFFQDYPLDALATTS 513 (603)
T ss_dssp CCCHHHHHHHHHHHHHHHTTSS--CHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHGGGGGGSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCC--CHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 5789999999999999986543 444333222 33445677778888999999999999999885543
No 170
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=22.77 E-value=1e+02 Score=16.72 Aligned_cols=27 Identities=7% Similarity=0.228 Sum_probs=20.0
Q ss_pred HHHHHHHHHhhCCCCH-----HHHHHHHHHHH
Q psy17883 67 MLNNVREFMKLHEVPK-----ALSERVMDYVV 93 (195)
Q Consensus 67 ~~~~l~~~l~~~~l~~-----~l~~rv~~y~~ 93 (195)
++.++.+.++.+++|. .|.+|+..+..
T Consensus 9 tV~eLK~~Lk~RGL~~~G~KadLieRL~~~~~ 40 (51)
T 1h1j_S 9 TVVQLKDLLTKRNLSVGGLKNELVQRLIKDDE 40 (51)
T ss_dssp CHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHH
Confidence 3567888999999984 67777776643
No 171
>4dn7_A ABC transporter, ATP-binding protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: 1PE; 1.60A {Methanosarcina maze}
Probab=22.46 E-value=1.7e+02 Score=23.68 Aligned_cols=41 Identities=12% Similarity=0.285 Sum_probs=29.1
Q ss_pred HHHHhhCCCCHHHHHHHH--HHHHHHHHhcCCCCHhHHHhhCCHhHHHHHHHHHh
Q psy17883 72 REFMKLHEVPKALSERVM--DYVVSTWAMTKGLDTDKVLNYCPKDMKADICVHLN 124 (195)
Q Consensus 72 ~~~l~~~~l~~~l~~rv~--~y~~~~~~~~~~~~~~~il~~lp~~L~~~i~~~~~ 124 (195)
--||+.|++|+.-.+++. .|+ .++++.+|.+++.++..-+-
T Consensus 381 LFYL~SRGIse~eA~~LIV~GFl------------~evi~~lp~e~~~el~~li~ 423 (429)
T 4dn7_A 381 VEYLMARGLTEDEAVGMIIRGFL------------DVGIRGIPEELKEEIENTIA 423 (429)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHH------------HGGGTTSCGGGHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHH------------HHHHHhCCHHHHHHHHHHHH
Confidence 457888999988777743 332 35888899998888775543
No 172
>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*
Probab=22.38 E-value=1.1e+02 Score=24.53 Aligned_cols=48 Identities=17% Similarity=0.109 Sum_probs=34.4
Q ss_pred hhcccccccCCceeEecCCCCCeEEEEEeeeEEEEe--C-CcEEEEeeccc
Q psy17883 147 MHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQ--D-DEVVAILDLIW 194 (195)
Q Consensus 147 ~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~--~-~~~~~~l~~~~ 194 (195)
-.+....+.||......-..++++++|++|+..+.. + +.....+..|.
T Consensus 52 ~s~~~~~l~pgg~~~ph~~~a~ei~yVl~G~~~v~~v~~~~~~~~~l~~GD 102 (397)
T 2phl_A 52 YRLVEFRSKPETLLLPQQADAELLLVVRSGSAILVLVKPDDRREYFFLTSD 102 (397)
T ss_dssp CEEEEEEECSSEEEEEEEESEEEEEEEEESEEEEEEEETTTEEEEEEEESS
T ss_pred EEEEEEEECCCcCccCEecCCCeEEEEEeeeEEEEEEeCCCcEEEEECCCC
Confidence 456677889999877666678899999999988753 3 33455666664
No 173
>1p32_A Mitochondrial matrix protein, SF2P32; 2.25A {Homo sapiens} SCOP: d.25.1.1 PDB: 3rpx_A
Probab=21.96 E-value=1.6e+02 Score=21.05 Aligned_cols=29 Identities=7% Similarity=0.258 Sum_probs=23.7
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy17883 68 LNNVREFMKLHEVPKALSERVMDYVVSTW 96 (195)
Q Consensus 68 ~~~l~~~l~~~~l~~~l~~rv~~y~~~~~ 96 (195)
.+.+.+||..|+++..+...+..|...+-
T Consensus 163 q~~l~~yLeeRGI~~~la~fl~~y~~~KE 191 (209)
T 1p32_A 163 YDHLMDFLADRGVDNTFADELVELSTALE 191 (209)
T ss_dssp HHHHHHHHHTTTCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 35678899999999999999988877653
No 174
>3mmi_A Myosin-4; globular tail, dilute domain, motor protein; 2.30A {Saccharomyces cerevisiae}
Probab=21.23 E-value=3.1e+02 Score=21.79 Aligned_cols=90 Identities=8% Similarity=-0.048 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHHH--HHHHHHHHHHHHHhcCCCCHhHHHhhCCHhHHHHHHHHHhHHHhhcCC---cc
Q psy17883 60 ATAKYHDMLNNVREFMKLHEVPKAL--SERVMDYVVSTWAMTKGLDTDKVLNYCPKDMKADICVHLNRKVFNEHP---AF 134 (195)
Q Consensus 60 ~~~~~~~~~~~l~~~l~~~~l~~~l--~~rv~~y~~~~~~~~~~~~~~~il~~lp~~L~~~i~~~~~~~~l~~~~---~f 134 (195)
+..+.+.++..+++|++. ++|... -+.+++--+.........++-+.+.++-+.|.- ....+++.... .+
T Consensus 242 ~G~qIr~NLs~LEeW~~~-~l~~a~~~L~~L~QA~~LLQ~~K~t~~Di~~i~~~C~~Lsp----~QL~kIL~~Y~p~~~~ 316 (386)
T 3mmi_A 242 YGYEVDRNIERLVSWFEP-RIEDVRPNLIQIIQAVKILQLKISNLNEFKLLFDFWYALNP----AQIQAILLKYKPANKG 316 (386)
T ss_dssp HHHHHHHHHHHHHHHHTT-TSSCCGGGGHHHHHHHHHHHCCCCCHHHHHHHHTTCCSSCH----HHHHHHHHTBCCC---
T ss_pred hHHHHHhhHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHhcccCCH----HHHHHHHHhCcCCCCC
Confidence 355567889999999998 777642 223333333331111111222223343333322 12224444332 22
Q ss_pred -ccCChHHHHHHhhhcccccc
Q psy17883 135 -RLASDGCLRALAMHFTMSHS 154 (195)
Q Consensus 135 -~~~~~~~l~~l~~~l~~~~~ 154 (195)
..+|+++++.+...++...-
T Consensus 317 E~~V~~e~i~~v~~~lk~~~~ 337 (386)
T 3mmi_A 317 EAGVPNEILNYLANVIKRENL 337 (386)
T ss_dssp --CCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcccc
Confidence 36899999999988877753
No 175
>3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A*
Probab=20.62 E-value=2.2e+02 Score=22.70 Aligned_cols=51 Identities=12% Similarity=-0.016 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcCCCCHhHHHhhCCHhHHHHHHHH
Q psy17883 67 MLNNVREFMKLHEVPKALSERVMDYVVSTWAMTKGLDTDKVLNYCPKDMKADICVH 122 (195)
Q Consensus 67 ~~~~l~~~l~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~~il~~lp~~L~~~i~~~ 122 (195)
..+++.+++...+.|+-=. ++-++..| +++...-+-+.+||..+|..+...
T Consensus 24 ~~~~l~~~~~~~g~~~fra---~qi~~w~~--~~~~~~~~~mt~l~k~~r~~l~~~ 74 (404)
T 3rfa_A 24 NRQQMREFFKDLGEKPFRA---DQVMKWMY--HYCCDNFDEMTDINKVLRGKLKEV 74 (404)
T ss_dssp CHHHHHHHHHHTTCCHHHH---HHHHHHHH--HSCCCCGGGCTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCcchHH---HHHHHHHH--hcCCCChHHhcccCHHHHHHHHhc
Confidence 3567778888888776433 34443333 334444445677888888777654
No 176
>3tvk_A DGC, diguanylate cyclase YDEH; putative zinc sensor, C-DI-GMP, transfe; HET: C2E; 1.80A {Escherichia coli}
Probab=20.17 E-value=1.2e+02 Score=20.93 Aligned_cols=36 Identities=25% Similarity=0.334 Sum_probs=28.1
Q ss_pred ChHHHHHHhhhcccccccCCceeEecCCCCCeEEEEEee
Q psy17883 138 SDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTG 176 (195)
Q Consensus 138 ~~~~l~~l~~~l~~~~~~~g~~i~~~g~~~~~~y~i~~G 176 (195)
-+..+..++..++. .+.+++.+.|-| +|++.++..+
T Consensus 56 GD~vL~~va~~L~~-~~~~~~~v~R~g--GDEF~ill~~ 91 (179)
T 3tvk_A 56 GDVVLRTLATYLAS-WTRDYETVYRYG--GEEFIIIVKA 91 (179)
T ss_dssp HHHHHHHHHHHHHH-TSCTTSCEEECS--SSEEEEEEEE
T ss_pred HHHHHHHHHHHhHh-cCCcccEEEEcc--CCEEEEEcCC
Confidence 35688888888875 457889999988 6788888765
Done!