RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17883
(195 letters)
>3ukn_A Novel protein similar to vertebrate potassium VOL channel,
subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD,
CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB:
3ukt_B 3ukv_B
Length = 212
Score = 172 bits (439), Expect = 5e-55
Identities = 49/138 (35%), Positives = 95/138 (68%), Gaps = 1/138 (0%)
Query: 53 IIQQMTSATAKYHDMLNNVREFMKLHEVPKALSERVMDYVVSTWAMTKGLDTDKVLNYCP 112
+ Q+M S + YH ++++F+++H +PKAL++R+++ +TW++ G+D ++L P
Sbjct: 3 MDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFP 62
Query: 113 KDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCF 172
+++ADI +HLN+++ + P F AS GCLR+L++ S APG+ L G+++ ++ F
Sbjct: 63 DELRADIAMHLNKELL-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYF 121
Query: 173 IVTGSLEVIQDDEVVAIL 190
+ +GS+EV++D+ V+AIL
Sbjct: 122 VCSGSMEVLKDNTVLAIL 139
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic
nucleotide-gated channel 2; CNBD, C-linker, pacemaker,
HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A
{Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A*
3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Length = 202
Score = 157 bits (400), Expect = 3e-49
Identities = 29/135 (21%), Positives = 50/135 (37%), Gaps = 1/135 (0%)
Query: 56 QMTSATAKYHDMLNNVREFMKLHEVPKALSERVMDYVVSTWAMTKGLDTDKVLNYCPKDM 115
M S+ +Y + V ++M H++P +++ DY + K D D +L +
Sbjct: 3 AMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPL 61
Query: 116 KADICVHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVT 175
+ I RK+ P F A + A+ PGD + G + FI
Sbjct: 62 REKIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQH 121
Query: 176 GSLEVIQDDEVVAIL 190
G + V+ L
Sbjct: 122 GVVSVLTKGNKEMKL 136
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic
nucleotide binding domain, C-linker, CAM SPHCN1, HCN;
HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Length = 198
Score = 148 bits (376), Expect = 1e-45
Identities = 28/135 (20%), Positives = 55/135 (40%), Gaps = 2/135 (1%)
Query: 57 MTSATAKYHDMLNNVREFMKLHEVPKALSERVMDYVVSTWAMTKGLDTDKVLNYCPKDMK 116
M S++ +Y + L V E+M+ ++P L +++DY + K D + + ++
Sbjct: 3 MDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREVSESIR 61
Query: 117 ADICVHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTG 176
D+ + R + P F A + + P D + G D + FI G
Sbjct: 62 QDVANYNCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQG 121
Query: 177 SLEVIQDD-EVVAIL 190
+++I D + L
Sbjct: 122 IVDIIMSDGVIATSL 136
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable
regulatory domain of potassium channel, membrane PR
transport protein; 2.20A {Mus musculus}
Length = 160
Score = 116 bits (292), Expect = 2e-33
Identities = 72/90 (80%), Positives = 78/90 (86%)
Query: 101 GLDTDKVLNYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLL 160
T+KVL CPKDM+ADICVHLNRKVF EHPAFRLASDGCLRALAM F H APGDL+
Sbjct: 2 SHMTEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLI 61
Query: 161 YHTGESIDSLCFIVTGSLEVIQDDEVVAIL 190
YH GES+DSLCF+V+GSLEVIQDDEVVAIL
Sbjct: 62 YHAGESVDSLCFVVSGSLEVIQDDEVVAIL 91
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide
monophosphate, CNMP, CNMP-binding, structural genomics;
NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Length = 137
Score = 51.7 bits (124), Expect = 5e-09
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 125 RKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDD 184
R+V P F + L A+ L G+ ++ + FI+ G LE + D
Sbjct: 9 RRV----PLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTD 64
Query: 185 E 185
Sbjct: 65 G 65
>1lnq_A MTHK channels, potassium channel related protein; rossman fold,
helix bundle, membrane protein; 3.30A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Length = 336
Score = 51.3 bits (123), Expect = 3e-08
Identities = 10/53 (18%), Positives = 26/53 (49%)
Query: 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTII 54
+ +LY+T + +VG+G+ + T FT+ ++++ +A + +
Sbjct: 46 WTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFL 98
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel;
4-helical bundle, ION channel, membrane, transport
protein; 3.20A {Bacillus weihenstephanensis}
Length = 148
Score = 48.8 bits (116), Expect = 7e-08
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIA-ALLYATIFGHVTTIIQQMTSA 60
+ ALYF++ +T+VG GN + +TD K+FTI + I L++ I + +
Sbjct: 53 PLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILS 112
Query: 61 TAKYHDMLNNVREFMKLHEVPKALSER 87
K + KL + K L+E
Sbjct: 113 NRKKETDAYRLEVMEKLEAIEKKLAEH 139
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer,
central cavity, ION metal transport, membrane protein;
2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A
2ahz_A
Length = 114
Score = 47.2 bits (112), Expect = 1e-07
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQ 56
+ ALYF++ +T+VG GN + +TD KIFTI + I L + +Q
Sbjct: 50 PIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL 104
>3ouf_A Potassium channel protein; ION channel, membrane, membrane
protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A
3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A
3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A
3k03_A
Length = 97
Score = 46.7 bits (111), Expect = 2e-07
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQ 56
+ ALYF++ +T+VG+G+ + +TD KIFTI + I L + +Q
Sbjct: 33 PIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL 87
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel,
open conformation, IO transport; 1.45A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3lde_A 3r65_A 3ous_A 3ldd_A
Length = 82
Score = 46.2 bits (110), Expect = 2e-07
Identities = 10/53 (18%), Positives = 25/53 (47%)
Query: 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTII 54
+ +LY+T + +VG+G+ + T FT ++++ +A + +
Sbjct: 29 WTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ
domain containing guanine nucleotide exchange factor 2,
PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Length = 134
Score = 45.4 bits (108), Expect = 8e-07
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Query: 121 VHLNRKVFNEHPAFRLASDGCLRALAMHFTM-SHSAPGDLLYHTGESIDSLCFIVTGSLE 179
+ + ++ PAF + R L G ++ G+ +DS I+ G++E
Sbjct: 11 IEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVE 70
Query: 180 VIQDDEVVAIL 190
+ D V L
Sbjct: 71 ISHPDGKVENL 81
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide
binding domain, evolution, PKA signaling, transfer; HET:
CMP; 2.21A {Saccharomyces cerevisiae}
Length = 246
Score = 42.5 bits (100), Expect = 3e-05
Identities = 9/69 (13%), Positives = 18/69 (26%)
Query: 122 HLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVI 181
K + F R + G + G+ D + G+++
Sbjct: 3 QRLEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFY 62
Query: 182 QDDEVVAIL 190
+D V
Sbjct: 63 VNDNKVNSS 71
Score = 40.6 bits (95), Expect = 1e-04
Identities = 11/83 (13%), Positives = 28/83 (33%)
Query: 105 DKVLNYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTG 164
D++ + + + P + + LA PG+ + G
Sbjct: 104 DRLTFRKILLGSSFKKRLMYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREG 163
Query: 165 ESIDSLCFIVTGSLEVIQDDEVV 187
+ ++ I G+++V + + V
Sbjct: 164 DQGENFYLIEYGAVDVSKKGQGV 186
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.3 bits (99), Expect = 5e-05
Identities = 30/185 (16%), Positives = 61/185 (32%), Gaps = 58/185 (31%)
Query: 42 LYATIFGHVTTIIQQMTSATAKYHDMLNNV-----REFMK---LHEVPKALSERVMDYVV 93
L G+V+++++ S ++ +LN +++ +H + L +
Sbjct: 60 LVGKFLGYVSSLVEP--SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEN----- 112
Query: 94 STWAMTKGLDTDKVL--NYCPKDMKADICVHLNRKVFNEHPA--FRLASDGCLRALAMHF 149
L K L NY + A + R + + FR +G + +A+ F
Sbjct: 113 -----DTTLVKTKELIKNY----ITA--RIMAKRPFDKKSNSALFRAVGEGNAQLVAI-F 160
Query: 150 TMSHSAPG----------DL--LYHTGES-IDSLCFIVTGSLEVIQDDEVVAI------L 190
G +L LY T + L +L + + A L
Sbjct: 161 -------GGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL 213
Query: 191 DLI-W 194
+++ W
Sbjct: 214 NILEW 218
Score = 31.6 bits (71), Expect = 0.16
Identities = 24/156 (15%), Positives = 44/156 (28%), Gaps = 68/156 (43%)
Query: 61 TAKYHDMLNNVREFMKLHEVPKALSERVMDYVVSTWAMTKGLDTDKVLNYCPKDMKADIC 120
+ +H L L +++ ++ VS + KD++ I
Sbjct: 424 ASPFHSHL--------LVPASDLINKDLVKNNVS-FN--------------AKDIQ--IP 458
Query: 121 VHLNRKVFNEHPA----FRLASDGCLRAL-------------AMHFTMSH---------S 154
V+ R+ S + F +H S
Sbjct: 459 VY--------DTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGAS 510
Query: 155 APGDLLYH----TGESIDSLCFIVTGSLEVIQDDEV 186
G L + TG + IV G+L++ DD+
Sbjct: 511 GLGVLTHRNKDGTGVRV-----IVAGTLDINPDDDY 541
Score = 31.2 bits (70), Expect = 0.25
Identities = 31/180 (17%), Positives = 50/180 (27%), Gaps = 61/180 (33%)
Query: 22 AAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQMTSATAKYHDMLNNVREFMKLHEVP 81
A N ++ IFG Q T Y + E L++
Sbjct: 148 AVGEGNAQLV-------------AIFG------GQ--GNTDDYFE------ELRDLYQTY 180
Query: 82 KALSERVMDYVVSTWAMTKGL--DTDKVLNYCPKDMKADICVHLNRKVFNEHPAFR---- 135
L V D + + L T + + +I L E+P+
Sbjct: 181 HVL---VGDLIKFSAETLSELIRTTLDAEKVFTQGL--NILEWL------ENPSNTPDKD 229
Query: 136 -LASDG------CLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVA 188
L S + LA H+ ++ G + GE L G+ Q +V
Sbjct: 230 YLLSIPISCPLIGVIQLA-HYVVTAKLLG---FTPGELRSYLK----GATGHSQG--LVT 279
Score = 29.2 bits (65), Expect = 0.97
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 19/89 (21%)
Query: 13 MTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTII------QQM-TSATAKYH 65
M ++ G VAA E + + + G + I+ QQ + +
Sbjct: 1809 MIAINPGRVAASFSQEALQYVVERVGKRT------GWLVEIVNYNVENQQYVAAGDLRAL 1862
Query: 66 DMLNNVREFMKLH-----EVPKALS-ERV 88
D + NV F+KL E+ K+LS E V
Sbjct: 1863 DTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
Score = 26.2 bits (57), Expect = 9.3
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 8/58 (13%)
Query: 142 LRALAM-HFTMSHS--APGDLLYHTGESIDSLCFIVT---GSLEVIQDDEVVAILDLI 193
R L + H ++ H P + + + F + DDE +L+
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIASQLQEQ--FNKILPEPTEGFAADDEPTTPAELV 61
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains,
cyclic nucleotide protein transferase, PKG; HET: CMP;
2.50A {Bos taurus}
Length = 299
Score = 41.4 bits (97), Expect = 7e-05
Identities = 7/90 (7%), Positives = 28/90 (31%), Gaps = 3/90 (3%)
Query: 101 GLDTDKVLNYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLL 160
G + + K ++ L ++ ++ + ++ + +
Sbjct: 17 GRGSMQAFRKFTKSERS---KDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCI 73
Query: 161 YHTGESIDSLCFIVTGSLEVIQDDEVVAIL 190
G+ + + G +EV ++ + +
Sbjct: 74 IKEGDVGSLVYVMEDGKVEVTKEGVKLCTM 103
Score = 35.7 bits (82), Expect = 0.006
Identities = 17/109 (15%), Positives = 36/109 (33%), Gaps = 7/109 (6%)
Query: 77 LHEVPKALSERVMDYVVSTWAMTKGLDTDKVLNYCPKDMKADICVHLNRKVFNEHPAFRL 136
L+ + + + + V WA+ + ++ + P F+
Sbjct: 115 LYNCTRTATVKTLVNVK-LWAIDRQCFQTIMMRTGLI------KHTEYMEFLKSVPTFQS 167
Query: 137 ASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDE 185
+ L LA +H G+ + G D+ I G + V ++D
Sbjct: 168 LPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDS 216
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG
potassium channel; dimer helical bundle beta barrel core
with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium
loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A*
1u12_A 3co2_A
Length = 138
Score = 40.0 bits (94), Expect = 9e-05
Identities = 14/64 (21%), Positives = 24/64 (37%)
Query: 124 NRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQD 183
N ++ P F+ L + G ++ GE D + F+V GS+ V
Sbjct: 9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP 68
Query: 184 DEVV 187
+ V
Sbjct: 69 NPVE 72
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase;
HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Length = 139
Score = 40.0 bits (94), Expect = 9e-05
Identities = 9/90 (10%), Positives = 30/90 (33%), Gaps = 3/90 (3%)
Query: 101 GLDTDKVLNYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLL 160
G + L + PK ++ L ++ ++ + ++ + +
Sbjct: 1 GSGSHVTLPFYPKSPQS---KDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCI 57
Query: 161 YHTGESIDSLCFIVTGSLEVIQDDEVVAIL 190
G+ + + G +EV ++ + +
Sbjct: 58 IKEGDVGSLVYVMEDGKVEVTKEGVKLCTM 87
>2z69_A DNR protein; beta barrel, dimerization helix, transcription
regulator; 2.10A {Pseudomonas aeruginosa}
Length = 154
Score = 40.0 bits (94), Expect = 1e-04
Identities = 9/74 (12%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 122 HLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVI 181
+++++ H F S L+ L + + G ++ GE + ++++G +++
Sbjct: 8 RVHQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIY 67
Query: 182 QDDE-----VVAIL 190
+ ++ +
Sbjct: 68 RLTPEGQEKILEVT 81
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide
binding protein, structural genomics; HET: MSE CMP;
1.79A {Methylobacillus flagellatus KT}
Length = 187
Score = 40.1 bits (94), Expect = 1e-04
Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 10/111 (9%)
Query: 85 SERVMDYVVSTWAMTKGLDTDKVLNYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRA 144
S+++ + +G+ D V +I +N+ F S+ +R
Sbjct: 3 SDKIHHHHHHENLYFQGMYPDLVHLGGADKYFEEILEIVNK-----IKLFGDFSNEEVRY 57
Query: 145 LAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDE-----VVAIL 190
L + + L G+ D L I+TG + VI+D +A +
Sbjct: 58 LCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVNVIKDIPNKGIQTIAKV 108
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural
genomics, joint center for structural genomics; HET:
MSE; 1.90A {Geobacter metallireducens}
Length = 142
Score = 39.6 bits (93), Expect = 1e-04
Identities = 9/56 (16%), Positives = 23/56 (41%)
Query: 130 EHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDE 185
+ F +D L+ +A+ G +++ D+L ++ G +E+ +
Sbjct: 10 VYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNG 65
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit;
beta-barrel, CAMP-binding, catalytic subunit,
transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B*
3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Length = 154
Score = 39.3 bits (92), Expect = 2e-04
Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 3/99 (3%)
Query: 93 VSTWAMTKGLDTDKVLNYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMHFTMS 152
+S T+ V PKD K + K ++ F D +
Sbjct: 8 ISAEVYTEEDAASYVRKVIPKDYKT---MAALAKAIEKNVLFSHLDDNERSDIFDAMFPV 64
Query: 153 HSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEVVAILD 191
G+ + G+ D+ I G ++V ++E +
Sbjct: 65 SFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVG 103
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces
coelicolor structural genomics, PSI-2, protein structure
initiative; 2.00A {Streptomyces coelicolor A3}
Length = 149
Score = 38.8 bits (91), Expect = 2e-04
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 130 EHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDE---- 185
+P F D L + A GD L+H G+ D L + G +++ +
Sbjct: 9 RNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRE 68
Query: 186 -VVAIL 190
++A++
Sbjct: 69 NMLAVV 74
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 3e-04
Identities = 36/241 (14%), Positives = 64/241 (26%), Gaps = 65/241 (26%)
Query: 17 GFGN--VAAET--DNE-------KIFTICM---------MIIAALLYATIFGHVTTIIQQ 56
G G VA + + KIF + + + + L I + T+
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 57 MTSATAKYHDMLNNVREFMKLHEVPKALSERVMDYVVSTWAMTKGLD--------T-DK- 106
++ + H + +R +K L V+ V + A + T K
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLL--VLLNVQNAKAW-NAFNLSCKILLTTRFKQ 276
Query: 107 VLNYCPKDMKADICVHLNRKVFNEHPAFRL---------------ASDGCLRALAMHFTM 151
V ++ I + + L R L++
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336
Query: 152 SHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDEV-------------VAI----LDLIW 194
+ D L I+ SL V++ E I L LIW
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396
Query: 195 Y 195
+
Sbjct: 397 F 397
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix,
homodimer, transcription regulator; 3.60A {Pseudomonas
aeruginosa}
Length = 227
Score = 38.0 bits (89), Expect = 9e-04
Identities = 9/76 (11%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 120 CVHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLE 179
+++++ H F S L+ L + + G ++ GE + ++++G ++
Sbjct: 3 FQRVHQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVK 62
Query: 180 VIQDDE-----VVAIL 190
+ + ++ +
Sbjct: 63 IYRLTPEGQEKILEVT 78
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane
helices, ION conduction, immunoglobulin fold, assembly;
3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16
f.14.1.1 PDB: 2wll_B* 2wll_A*
Length = 333
Score = 37.9 bits (87), Expect = 0.001
Identities = 13/90 (14%), Positives = 32/90 (35%), Gaps = 6/90 (6%)
Query: 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQMTSAT 61
+V A +F++ + +VG+G++ +T + + A G + +
Sbjct: 97 FVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTG---LVFARFARPR 153
Query: 62 AKYHDMLNNVREFMKLHEVPKALSERVMDY 91
AK + + ++ L R +
Sbjct: 154 AKIMFARHAI---VRPFNGRMTLMVRAANA 180
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding,
DNA-binding nucleotide-binding, transcription,
transcription regulation; HET: CMP; 1.66A {Escherichia
coli}
Length = 260
Score = 37.7 bits (88), Expect = 0.001
Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 5/72 (6%)
Query: 124 NRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQD 183
+ +D L H + L H GE ++L +IV GS+ V+
Sbjct: 44 AMADIGSMVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIK 103
Query: 184 DE-----VVAIL 190
DE +++ L
Sbjct: 104 DEEGKEMILSYL 115
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Length = 213
Score = 36.8 bits (86), Expect = 0.002
Identities = 8/57 (14%), Positives = 20/57 (35%)
Query: 129 NEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDE 185
L+ L + G+++ H + I+ + ++ G+L+ E
Sbjct: 2 GSDKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSE 58
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP),
dimer, inactive(APO, unliganded allostery, DNA binding,
cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB:
3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Length = 227
Score = 36.8 bits (86), Expect = 0.002
Identities = 11/71 (15%), Positives = 26/71 (36%), Gaps = 5/71 (7%)
Query: 125 RKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDD 184
++ F+ + AL G ++ GE D L I++G +++ +
Sbjct: 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRA 64
Query: 185 E-----VVAIL 190
++ I+
Sbjct: 65 PDGRENLLTIM 75
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged
helix-turn-helix motif, DNA binding, transcription
activator; HET: CMP; 2.40A {Thermus thermophilus}
Length = 216
Score = 35.7 bits (83), Expect = 0.004
Identities = 9/64 (14%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
Query: 132 PAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDE-----V 186
P F + + +F G +++ G+ +L + +G + + +
Sbjct: 5 PLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERT 64
Query: 187 VAIL 190
+A+L
Sbjct: 65 LALL 68
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery,
DNA binding cyclic A transcription regulator; HET: CMP;
1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A*
3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A*
1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A*
3rdi_A* 3rou_A* 3rpq_A* ...
Length = 210
Score = 35.3 bits (82), Expect = 0.006
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 134 FRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDE-----VVA 188
+ +D L H + L H GE ++L +IV GS+ V+ DE +++
Sbjct: 4 GKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILS 63
Query: 189 IL 190
L
Sbjct: 64 YL 65
>3ukm_A Potassium channel subfamily K member 1; membrane protein,
eukaryotic, two-pore DO potassium channel, K2P channel,
membrane; HET: UND; 3.40A {Homo sapiens}
Length = 280
Score = 35.6 bits (81), Expect = 0.006
Identities = 12/85 (14%), Positives = 30/85 (35%), Gaps = 8/85 (9%)
Query: 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQMTSAT 61
++ + YF ++++G G+ + F I + +++
Sbjct: 202 FLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCE-- 259
Query: 62 AKYHDMLNNVREFMKLHEVPKALSE 86
L+ +++F K+ V K E
Sbjct: 260 ------LHELKKFRKMFYVKKDKDE 278
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling;
HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB:
4avb_A* 4avc_A*
Length = 333
Score = 35.8 bits (82), Expect = 0.006
Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Query: 132 PAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDD----EVV 187
F+ L +LA +A G +L GE S I +GS EV ++
Sbjct: 19 DVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAII 78
Query: 188 AIL 190
A
Sbjct: 79 ARA 81
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Length = 231
Score = 35.3 bits (82), Expect = 0.006
Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 5/66 (7%)
Query: 130 EHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDE---- 185
P F+ + +R T + P +L+ ++L + TG + V +
Sbjct: 10 RSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRE 69
Query: 186 -VVAIL 190
V+ +
Sbjct: 70 RVLGDI 75
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme
sensor, catabolite gene activator protein; HET: HEM;
2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Length = 222
Score = 34.9 bits (81), Expect = 0.009
Identities = 10/63 (15%), Positives = 16/63 (25%), Gaps = 4/63 (6%)
Query: 132 PAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDE----VV 187
+ F A G L+ + + +V G L V E +
Sbjct: 6 NIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISL 65
Query: 188 AIL 190
L
Sbjct: 66 FYL 68
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward
rectifier, potassium channel selectivity filter, metal
transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Length = 321
Score = 35.1 bits (80), Expect = 0.010
Identities = 12/90 (13%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
Query: 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQMTSAT 61
+ A +F++ + +VG+G++ +T + + A G +M+
Sbjct: 79 FGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATG---CAFIKMSQPK 135
Query: 62 AKYHDMLNNVREFMKLHEVPKALSERVMDY 91
+ ++ + + + + L RV +
Sbjct: 136 KRAETLMFSEHAVISMRDGKLTLMFRVGNL 165
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP
regulatory protein, structural genomi 2, protein
structure initiative; 2.20A {Ruegeria pomeroyi} PDB:
3h3z_A*
Length = 237
Score = 34.6 bits (80), Expect = 0.010
Identities = 9/74 (12%), Positives = 25/74 (33%), Gaps = 5/74 (6%)
Query: 122 HLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVI 181
+ + R + + AL G+ L+ E ++ ++ G +++
Sbjct: 7 EAQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLF 66
Query: 182 QDDE-----VVAIL 190
+ VV++
Sbjct: 67 RMTPTGSEAVVSVF 80
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix,
transcription factor, CAMP-B proteins, CAMP receptor
protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP:
a.4.5.4 b.82.3.2
Length = 207
Score = 34.5 bits (80), Expect = 0.012
Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 142 LRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDE-----VVAIL 190
L L H + + G+ ++L FI+ GS+ ++ +D+ ++ L
Sbjct: 6 LDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYL 59
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+
IONS, cell membrane, transport PROT; 3.80A {Streptomyces
lividans} PDB: 1f6g_A
Length = 166
Score = 34.1 bits (78), Expect = 0.012
Identities = 13/84 (15%), Positives = 32/84 (38%)
Query: 5 ALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQMTSATAKY 64
AL++++ T+VG+G++ T ++ + +M+ + + + T +
Sbjct: 71 ALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQQQQ 130
Query: 65 HDMLNNVREFMKLHEVPKALSERV 88
+ +AL ER
Sbjct: 131 FVRHSEKAAEEAYTRTTRALHERF 154
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION
channel, inwardly rectifying channel, metal transport;
2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16
f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A*
2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A*
2x6a_A*
Length = 301
Score = 34.7 bits (79), Expect = 0.013
Identities = 10/75 (13%), Positives = 24/75 (32%)
Query: 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQMTSAT 61
+ A +F++ M ++G+G + + L A + + T+
Sbjct: 83 FTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRPTAGV 142
Query: 62 AKYHDMLNNVREFMK 76
M+ + E
Sbjct: 143 LFSSRMVISDFEGKP 157
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity,
CRP, CLP, C-DI-GMP receptor, quorum SENS binding,
transcription; 2.30A {Xanthomonas campestris PV}
Length = 230
Score = 34.2 bits (79), Expect = 0.015
Identities = 8/64 (12%), Positives = 23/64 (35%), Gaps = 5/64 (7%)
Query: 132 PAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDE-----V 186
G + H ++ G+ +L ++++GS+ +I +++ V
Sbjct: 17 TPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELV 76
Query: 187 VAIL 190
+
Sbjct: 77 LGYF 80
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit,
CAMP-dependent protein kinase catalytic subunit A;
isoform diversity; HET: TPO SEP ATP; 3.70A {Homo
sapiens}
Length = 381
Score = 34.7 bits (79), Expect = 0.015
Identities = 9/71 (12%), Positives = 18/71 (25%)
Query: 115 MKADICVHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIV 174
+ + ++ +A G+ + GE D I
Sbjct: 237 GSTLRKRKMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIIT 296
Query: 175 TGSLEVIQDDE 185
G+ V+Q
Sbjct: 297 EGTASVLQRRS 307
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit,
CAMP-dependent protein kinase catalytic subunit alpha;
PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus
norvegicus} PDB: 3idc_B*
Length = 161
Score = 33.9 bits (78), Expect = 0.015
Identities = 6/61 (9%), Positives = 20/61 (32%)
Query: 125 RKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDD 184
++ + F+ + + G+ + G+ D+ I G+ ++
Sbjct: 37 QEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKC 96
Query: 185 E 185
+
Sbjct: 97 D 97
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration;
HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP:
a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A*
3e5q_A 2h6b_A* 2h6c_A
Length = 250
Score = 33.8 bits (78), Expect = 0.021
Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 13/83 (15%)
Query: 113 KDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCF 172
+ + D C + LR + A G + GE I S+ F
Sbjct: 4 EGLGKDFCGAI--------IPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIF 55
Query: 173 IVTGSLEVIQDDE-----VVAIL 190
+V G +++ E ++
Sbjct: 56 LVEGKIKLDIIFEDGSEKLLYYA 78
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2,
CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus
musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Length = 469
Score = 34.1 bits (77), Expect = 0.021
Identities = 11/61 (18%), Positives = 21/61 (34%)
Query: 125 RKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDD 184
AF LR + + + G L+ G+ + ++ GSL+V +
Sbjct: 41 FTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSE 100
Query: 185 E 185
Sbjct: 101 T 101
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer,
ION transport, ionic channel, membrane, transmembrane,
transport; NMR {Escherichia coli} PDB: 2kb1_A
Length = 103
Score = 32.4 bits (74), Expect = 0.023
Identities = 9/48 (18%), Positives = 24/48 (50%)
Query: 5 ALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTT 52
A+++++ T+VG+G+ T+ + +M ++A + + T
Sbjct: 44 AIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALAT 91
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics,
porphyromona gingivalis, PSI, protein structure
initiative; 1.90A {Porphyromonas gingivalis} SCOP:
a.4.5.4 b.82.3.2
Length = 232
Score = 33.8 bits (78), Expect = 0.024
Identities = 6/64 (9%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
Query: 132 PAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDE-----V 186
+ L ++ L ++ G+ ++L ++ G ++++++ +
Sbjct: 16 DVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHI 75
Query: 187 VAIL 190
I+
Sbjct: 76 SRIV 79
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic
nucleotide-binding domain, structural genomics, joint
for structural genomics; 2.55A {Eubacterium rectale atcc
33656}
Length = 220
Score = 33.0 bits (76), Expect = 0.038
Identities = 6/54 (11%), Positives = 19/54 (35%)
Query: 132 PAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDE 185
P + + + ++ + H G ++++ L + +G L +
Sbjct: 9 PLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSD 62
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix,
cell membrane, ION transport, ionic channel, membrane,
transmembrane; 3.80A {Streptomyces lividans}
Length = 139
Score = 32.2 bits (73), Expect = 0.041
Identities = 14/85 (16%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
Query: 5 ALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTT-IIQQMTSATAK 63
AL++++ T+VG+G++ T ++ + +M+ + + + T + +
Sbjct: 44 ALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQERRGH 103
Query: 64 YHDMLNNVREFMKLHEVPKALSERV 88
+ E +AL ER
Sbjct: 104 FVRHSEKAAEEAYTRTT-RALHERF 127
>2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP,
cyclic nucleotide, regulation, auto-inhibition, CDC25
homology domain; 2.7A {Mus musculus}
Length = 999
Score = 32.9 bits (74), Expect = 0.069
Identities = 11/54 (20%), Positives = 21/54 (38%)
Query: 132 PAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDE 185
AF LR + + + G L+ G+ + ++ GSL+V +
Sbjct: 48 KAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSET 101
>3um7_A Potassium channel subfamily K member 4; potassium ION channel,
metal transport; 3.31A {Homo sapiens}
Length = 309
Score = 31.7 bits (71), Expect = 0.12
Identities = 15/74 (20%), Positives = 32/74 (43%)
Query: 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQMTSAT 61
+A +F+ T +T++G+GNVA TD ++F I ++ L+ + V +
Sbjct: 116 LGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSSLRHG 175
Query: 62 AKYHDMLNNVREFM 75
+ + +
Sbjct: 176 IGHIEAIFLKWHVP 189
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural
genomics, joint center for structura genomics, JCSG;
2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4
b.82.3.2
Length = 232
Score = 31.1 bits (71), Expect = 0.14
Identities = 6/31 (19%), Positives = 16/31 (51%)
Query: 155 APGDLLYHTGESIDSLCFIVTGSLEVIQDDE 185
G+ + +G LCF++ G + ++ + +
Sbjct: 49 KAGETIIKSGNPCTQLCFLLKGEISIVTNAK 79
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA;
3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Length = 355
Score = 31.4 bits (71), Expect = 0.16
Identities = 9/77 (11%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
Query: 5 ALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQMTSATAKY 64
A+++ + +++ G+G+ ++ ++ +M+ ++ I+ + +
Sbjct: 165 AMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLW----AGIL---ATGFYQE 217
Query: 65 HDMLNNVREFMKLHEVP 81
+ VR + + VP
Sbjct: 218 VRRGDFVRNWQLVAAVP 234
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA,
structure, membrane protein, metal transport; HET: PCA;
NMR {Streptomyces lividans} SCOP: f.14.1.1
Length = 155
Score = 30.6 bits (69), Expect = 0.17
Identities = 12/48 (25%), Positives = 25/48 (52%)
Query: 5 ALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTT 52
AL++++ T+VG+G++ T + + +M+ Y +F V T
Sbjct: 88 ALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVAT 135
>3sya_A G protein-activated inward rectifier potassium CH; ION channel,
potassium channel, inward rectification, sodium PIP2
binding, G protein binding; HET: PIO; 2.98A {Mus
musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Length = 340
Score = 31.3 bits (70), Expect = 0.18
Identities = 13/91 (14%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 2 YVTALYFTMTCMTSVGFGN--VAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQMTS 59
+V+A F++ T++G+G + + I + ++ +++ A + G + +++
Sbjct: 92 FVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVG---CMFVKISQ 148
Query: 60 ATAKYHDMLNNVREFMKLHEVPKALSERVMD 90
+ ++ + + + + L RV D
Sbjct: 149 PKKRAETLVFSTHAVISMRDGKLCLMFRVGD 179
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM
protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB:
2a0l_A
Length = 223
Score = 31.0 bits (71), Expect = 0.19
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 5 ALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYA 44
AL++ + T+VG+G+V T K+ I +M+
Sbjct: 169 ALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALT 208
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid
semi-synthetic, membrane protein; HET: 1EM; 1.72A
{Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C*
1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C*
2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C*
3ifx_A* 1j95_A 2jk5_C* ...
Length = 122
Score = 30.1 bits (68), Expect = 0.22
Identities = 8/48 (16%), Positives = 22/48 (45%)
Query: 5 ALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTT 52
AL++ T+V +G++ T ++ + +M+ + + + T
Sbjct: 65 ALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALAT 112
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics,
APC88869, cyclic nucleotide binding REG protein, PSI-2;
1.80A {Cytophaga hutchinsonii}
Length = 194
Score = 30.1 bits (68), Expect = 0.31
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 138 SDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSL 178
+D L+ F + + L TGE F+V G L
Sbjct: 19 TDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCL 59
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken
structural genomics/proteomics in RSGI; 1.92A {Thermus
thermophilus} PDB: 2zdb_A
Length = 195
Score = 29.9 bits (68), Expect = 0.42
Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 155 APGDLLYHTGESIDSLCFIVTGSLEVIQDDE-----VVAIL 190
A + +Y GE +L + G + V++ + +
Sbjct: 5 ARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHV 45
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription,
transcription regulation; HET: BOG; 1.90A {Anabaena}
PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Length = 243
Score = 29.2 bits (66), Expect = 0.61
Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 10/62 (16%)
Query: 134 FRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDE-----VVA 188
FR + G + F ++ G+ + + F++ G++++ + E VA
Sbjct: 33 FRQMATGAFPPVVETF-----ERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVA 87
Query: 189 IL 190
+L
Sbjct: 88 LL 89
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid,
receptor, metal transport; HET: P8P; 2.45A {Gallus
gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Length = 343
Score = 29.0 bits (64), Expect = 1.1
Identities = 16/92 (17%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
Query: 2 YVTALYFTMTCMTSVGFGN--VAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQMTS 59
+V A F++ T++G+G V E + I+ ++ + + G I+ +M
Sbjct: 95 FVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIG---AIMAKMAR 151
Query: 60 ATAKYHDMLNNVREFMKLHEVPKALSERVMDY 91
+ +L + + + + L RV +
Sbjct: 152 PKKRAQTLLFSHNAVVAMRDGKLCLMWRVGNL 183
>1jf3_A Monomer hemoglobin component III; oxygen storage/transport complex;
HET: HEM; 1.40A {Glycera dibranchiata} SCOP: a.1.1.2
PDB: 1jl7_A* 1jf4_A* 1jl6_A* 1vre_A* 1vrf_A* 1hbg_A*
2hbg_A*
Length = 147
Score = 26.7 bits (59), Expect = 3.8
Identities = 16/93 (17%), Positives = 27/93 (29%), Gaps = 22/93 (23%)
Query: 83 ALSERVMDYVVSTWAMTKGLDTDKVLNYCPKDMKADICVHLNRKVFNEHPAFRLASDGCL 142
LS V STW G D A + K + HP +
Sbjct: 1 GLSAAQRQVVASTWKDIAGADNG-----------AGVGKECLSKFISAHPE--------M 41
Query: 143 RALAMHFTMSHSAPGDLLYHTGESIDSLCFIVT 175
A+ F S ++ + + + + V+
Sbjct: 42 AAV---FGFSGASDPGVAELGAKVLAQIGVAVS 71
>1f8n_A Lipoxygenase-1; dioxygenase, metalloprotein, fatty acids,
oxidoreductase; 1.40A {Glycine max} SCOP: a.119.1.1
b.12.1.1 PDB: 1yge_A 2sbl_B 3pzw_A 1fgq_A 1fgr_A 3bnd_A
1fgt_A 1fgm_A 3bnb_A 1fgo_A 1y4k_A 3bne_A 3bnc_A 1ik3_A*
1hu9_A* 1jnq_A* 1lnh_A 1n8q_A* 1no3_A* 1rrh_A ...
Length = 839
Score = 27.5 bits (60), Expect = 3.8
Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 11/68 (16%)
Query: 119 ICVHLNRKVFNEHPAFRLASDGCLRALAMHF--TMSHSAPG-DLLYHTGESIDSLCFIVT 175
+ +R + HP ++L L H+ M+ +A L + I++
Sbjct: 510 FVIATHRHLSVLHPIYKL--------LTPHYRNNMNINALARQSLINANGIIETTFLPSK 561
Query: 176 GSLEVIQD 183
S+E+
Sbjct: 562 YSVEMSSA 569
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor,
voltage dependent, ION CH shaker, membrane protein,
eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB:
3lnm_B* 3lut_B* 2a79_B*
Length = 514
Score = 26.9 bits (59), Expect = 5.4
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 5 ALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYA 44
A ++ + MT+VG+G++ T KI I L A
Sbjct: 379 AFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIA 418
>3tkf_A Transaldolase; structural genomics, center for structural genomics
of infec diseases, csgid, alpha-beta barrel/TIM barrel;
HET: I22 EPE; 1.50A {Francisella tularensis subsp} PDB:
3te9_A* 3upb_A* 3tk7_A* 3tno_A* 4e0c_A 3igx_A
Length = 345
Score = 26.5 bits (58), Expect = 7.2
Identities = 13/90 (14%), Positives = 36/90 (40%), Gaps = 5/90 (5%)
Query: 19 GNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQMTSATAKYHDMLNNVREFMKLH 78
++ ++ ++I ++ + I G V++ + S ++ + + +
Sbjct: 89 PDLNSDDLVKEIAIEILVSFGIKILDVIEGKVSSEVDARVSFN--SATTIDYAKRIIARY 146
Query: 79 EVPKALSERVMDYVVSTWAMTKGLDTDKVL 108
E +RV+ + +TW G+ K+L
Sbjct: 147 ESNGIPKDRVLIMIAATWE---GIKAAKLL 173
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.136 0.413
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,965,420
Number of extensions: 167385
Number of successful extensions: 460
Number of sequences better than 10.0: 1
Number of HSP's gapped: 456
Number of HSP's successfully gapped: 73
Length of query: 195
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 106
Effective length of database: 4,216,824
Effective search space: 446983344
Effective search space used: 446983344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.0 bits)