RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17883
(195 letters)
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 193
Score = 66.2 bits (160), Expect = 2e-14
Identities = 27/131 (20%), Positives = 49/131 (37%), Gaps = 1/131 (0%)
Query: 59 SATAKYHDMLNNVREFMKLHEVPKALSERVMDYVVSTWAMTKGLDTDKVLNYCPKDMKAD 118
S+ +Y + V ++M H++P +++ DY + K D D +L ++ +
Sbjct: 2 SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRY-QGKMFDEDSILGELNGPLREE 60
Query: 119 ICVHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSL 178
I RK+ P F A + A+ PGD + G + FI G +
Sbjct: 61 IVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVV 120
Query: 179 EVIQDDEVVAI 189
V+
Sbjct: 121 SVLTKGNKEMK 131
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK
{Archaeon Methanothermobacter thermautotrophicus
[TaxId: 145262]}
Length = 80
Score = 51.2 bits (123), Expect = 7e-10
Identities = 10/53 (18%), Positives = 26/53 (49%)
Query: 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTII 54
+ +LY+T + +VG+G+ + T FT+ ++++ +A + +
Sbjct: 28 WTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFL 80
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel
kirbac3.1 {Magnetospirillum magnetotacticum [TaxId:
188]}
Length = 116
Score = 43.0 bits (101), Expect = 2e-06
Identities = 7/55 (12%), Positives = 18/55 (32%)
Query: 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQ 56
+ A +F++ M ++G+G + + L A + +
Sbjct: 61 FTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTR 115
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces
coelicolor [TaxId: 1902]}
Length = 103
Score = 40.3 bits (94), Expect = 2e-05
Identities = 10/56 (17%), Positives = 25/56 (44%)
Query: 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQM 57
Y AL++++ T+VG+G++ T + + +M+ + + + T
Sbjct: 41 YPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGR 96
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel
Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
Length = 116
Score = 39.6 bits (92), Expect = 3e-05
Identities = 10/55 (18%), Positives = 23/55 (41%)
Query: 2 YVTALYFTMTCMTSVGFGNVAAETDNEKIFTICMMIIAALLYATIFGHVTTIIQQ 56
+V A +F++ + +VG+G++ +T + + A G V +
Sbjct: 62 FVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFAR 116
>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1
and 3 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 155
Score = 32.9 bits (74), Expect = 0.011
Identities = 11/59 (18%), Positives = 21/59 (35%)
Query: 121 VHLNRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLE 179
V + AF LR + + + G L+ G+ + ++ GSL+
Sbjct: 19 VDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLD 77
>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti
[TaxId: 381]}
Length = 133
Score = 31.3 bits (70), Expect = 0.028
Identities = 13/59 (22%), Positives = 22/59 (37%)
Query: 124 NRKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQ 182
N ++ P F+ L + G ++ GE D + F+V GS+ V
Sbjct: 9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVAT 67
>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 132
Score = 31.4 bits (70), Expect = 0.031
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 138 SDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDE 185
+D L H + L H GE ++L +IV GS+ V+ DE
Sbjct: 2 TDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDE 49
>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel
6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 137
Score = 31.1 bits (69), Expect = 0.041
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 125 RKVFNEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDD 184
R+V P F + L A+ L G+ ++ + FI+ G LE + D
Sbjct: 9 RRV----PLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTD 64
Query: 185 E 185
Sbjct: 65 G 65
>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 147
Score = 29.0 bits (64), Expect = 0.21
Identities = 7/57 (12%), Positives = 17/57 (29%)
Query: 129 NEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDE 185
P + + G+ + G+S DS + +G + + +
Sbjct: 5 ESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDSADSFFIVESGEVRITMKRK 61
>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A
{Cow (Bos taurus) [TaxId: 9913]}
Length = 132
Score = 27.4 bits (60), Expect = 0.60
Identities = 10/57 (17%), Positives = 16/57 (28%)
Query: 129 NEHPAFRLASDGCLRALAMHFTMSHSAPGDLLYHTGESIDSLCFIVTGSLEVIQDDE 185
++ +A G + GE D I+ GS V+Q
Sbjct: 5 SKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRS 61
>d3bnea1 a.119.1.1 (A:150-839) Lipoxigenase, C-terminal domain
{Soybean (Glycine max), isozyme L1 [TaxId: 3847]}
Length = 690
Score = 27.6 bits (61), Expect = 1.1
Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 11/67 (16%)
Query: 119 ICVHLNRKVFNEHPAFRLASDGCLRALAMHF--TMSHSAPG-DLLYHTGESIDSLCFIVT 175
+ +R + HP ++L L H+ M+ +A L + ++
Sbjct: 361 FVIATHRHLSVLHPIYKL--------LTPHYRNNMNINALARQSLINANGIAETTFLPSK 412
Query: 176 GSLEVIQ 182
S+E+
Sbjct: 413 YSVEMSS 419
>d1tfra1 a.60.7.1 (A:183-305) T4 RNase H {Bacteriophage T4 [TaxId:
10665]}
Length = 123
Score = 26.3 bits (58), Expect = 1.6
Identities = 6/53 (11%), Positives = 18/53 (33%), Gaps = 4/53 (7%)
Query: 61 TAKYHDMLNNVREFMKLHEVPKALSERVMDYVVSTWAMTKGLDTDKVLNYCPK 113
T ++ + +P ++ +++ + K K+ +Y K
Sbjct: 62 TESEYNRYKENLVLIDFDYIPDNIASNIVN----YYNSYKLPPRGKIYSYFVK 110
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.136 0.413
Gapped
Lambda K H
0.267 0.0582 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 703,918
Number of extensions: 29234
Number of successful extensions: 110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 18
Length of query: 195
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 114
Effective length of database: 1,295,466
Effective search space: 147683124
Effective search space used: 147683124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.4 bits)