BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17885
(95 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2L0W|A Chain A, Solution Nmr Structure Of The N-Terminal Pas Domain Of
Herg Potassium Channel
Length = 138
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query: 11 RKNTAPEVELVRRTYMYDERQKNGHPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEV 70
R + AP+ T++ +K F++ANA++ + ++YCN+ FC++ GY+RAEV
Sbjct: 8 RGHVAPQ-----NTFLDTIIRKFEGQSRKFIIANARVENCAVIYCNDGFCELCGYSRAEV 62
>pdb|2L4R|A Chain A, Nmr Solution Structure Of The N-Terminal Pas Domain Of
Herg
Length = 135
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query: 11 RKNTAPEVELVRRTYMYDERQKNGHPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEV 70
R + AP+ T++ +K F++ANA++ + ++YCN+ FC++ GY+RAEV
Sbjct: 5 RGHVAPQ-----NTFLDTIIRKFEGQSRKFIIANARVENCAVIYCNDGFCELCGYSRAEV 59
>pdb|2L1M|A Chain A, Solution Structure Of The Eag Domain Of The Herg
(Kv11.1) K+ Channel
Length = 150
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query: 11 RKNTAPEVELVRRTYMYDERQKNGHPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEV 70
R + AP+ T++ +K F++ANA++ + ++YCN+ FC++ GY+RAEV
Sbjct: 5 RGHVAPQ-----NTFLDTIIRKFEGQSRKFIIANARVENCAVIYCNDGFCELCGYSRAEV 59
>pdb|1BYW|A Chain A, Structure Of The N-Terminal Domain Of The Human-Erg
Potassium Channel
Length = 110
Score = 42.7 bits (99), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 26/31 (83%)
Query: 40 FLLANAQIVDFPIVYCNESFCKISGYNRAEV 70
F++ANA++ + ++YCN+ FC++ GY+RAEV
Sbjct: 4 FIIANARVENCAVIYCNDGFCELCGYSRAEV 34
>pdb|4EEU|A Chain A, Crystal Structure Of Philov2.1
Length = 118
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 9/34 (26%), Positives = 25/34 (73%)
Query: 37 DSSFLLANAQIVDFPIVYCNESFCKISGYNRAEV 70
+ SF++ + ++ D+PI++ ++ F +++ Y+R E+
Sbjct: 10 EKSFVITDPRLPDYPIIFASDGFLELTEYSREEI 43
>pdb|2PD8|A Chain A, 1.8 Angstrom Crystal Structure Of The Cys71ser Mutant Of
Vivid
pdb|2PD8|B Chain B, 1.8 Angstrom Crystal Structure Of The Cys71ser Mutant Of
Vivid
Length = 149
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 38 SSFLLANAQIVDFPIVYCNESFCKISGYNRAEV 70
S+ +L + + D PIVY +E+F ++GY+ AEV
Sbjct: 36 SALILCDLKQKDTPIVYASEAFLYMTGYSNAEV 68
>pdb|1N9L|A Chain A, Crystal Structure Of The Phot-lov1 Domain From
Chlamydomonas Reinhardtii In The Dark State.
pdb|1N9N|A Chain A, Crystal Structure Of The Phot-Lov1 Domain From
Chlamydomonas Reinhardtii In Illuminated State. Data
Set Of A Single Crystal.
pdb|1N9O|A Chain A, Crystal Structure Of The Phot-Lov1 Domain From
Chlamydomonas Reinhardtii In Illuminated State.
Composite Data Set
Length = 109
Score = 32.3 bits (72), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 39 SFLLANAQIVDFPIVYCNESFCKISGYNRAEV 70
+F++A+A + D P+VY +E F ++GY EV
Sbjct: 5 TFVVADATLPDCPLVYASEGFYAMTGYGPDEV 36
>pdb|3T50|A Chain A, X-Ray Structure Of The Lov Domain From The Lov-Hk
Sensory Protein From Brucella Abortus (Dark State).
pdb|3T50|B Chain B, X-Ray Structure Of The Lov Domain From The Lov-Hk
Sensory Protein From Brucella Abortus (Dark State)
Length = 128
Score = 32.0 bits (71), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 40 FLLANAQIVDFPIVYCNESFCKISGYNRAEV 70
L+ N + D PIV+ N +F K++GY EV
Sbjct: 10 MLITNPHLPDNPIVFANPAFLKLTGYEADEV 40
>pdb|3IS2|A Chain A, 2.3 Angstrom Crystal Structure Of A Cys71 Sulfenic Acid
Form Of Vivid
Length = 154
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 39 SFLLANAQIVDFPIVYCNESFCKISGYNRAEV 70
+ +L + + D PIVY +E+F ++GY+ AEV
Sbjct: 40 ALILCDLKQKDTPIVYASEAFLYMTGYSNAEV 71
>pdb|3D72|A Chain A, 1.65 Angstrom Crystal Structure Of The Cys71val Variant
In The Fungal Photoreceptor Vvd
pdb|3D72|B Chain B, 1.65 Angstrom Crystal Structure Of The Cys71val Variant
In The Fungal Photoreceptor Vvd
Length = 149
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 39 SFLLANAQIVDFPIVYCNESFCKISGYNRAEV 70
+ +L + + D PIVY +E+F ++GY+ AEV
Sbjct: 37 ALILCDLKQKDTPIVYASEAFLYMTGYSNAEV 68
>pdb|3IS2|B Chain B, 2.3 Angstrom Crystal Structure Of A Cys71 Sulfenic Acid
Form Of Vivid
Length = 154
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 39 SFLLANAQIVDFPIVYCNESFCKISGYNRAEV 70
+ +L + + D PIVY +E+F ++GY+ AEV
Sbjct: 40 ALILCDLKQKDTPIVYASEAFLYMTGYSNAEV 71
>pdb|2PD7|A Chain A, 2.0 Angstrom Crystal Structure Of The Fungal Blue-Light
Photoreceptor Vivid
pdb|2PD7|B Chain B, 2.0 Angstrom Crystal Structure Of The Fungal Blue-Light
Photoreceptor Vivid
pdb|2PDR|A Chain A, 1.7 Angstrom Crystal Structure Of The Photo-excited
Blue- Light Photoreceptor Vivid
pdb|2PDR|B Chain B, 1.7 Angstrom Crystal Structure Of The Photo-excited
Blue- Light Photoreceptor Vivid
pdb|2PDR|C Chain C, 1.7 Angstrom Crystal Structure Of The Photo-excited
Blue- Light Photoreceptor Vivid
pdb|2PDR|D Chain D, 1.7 Angstrom Crystal Structure Of The Photo-excited
Blue- Light Photoreceptor Vivid
pdb|2PDT|A Chain A, 2.3 Angstrom Structure Of Phosphodiesterase Treated
Vivid
pdb|2PDT|B Chain B, 2.3 Angstrom Structure Of Phosphodiesterase Treated
Vivid
pdb|2PDT|C Chain C, 2.3 Angstrom Structure Of Phosphodiesterase Treated
Vivid
pdb|2PDT|D Chain D, 2.3 Angstrom Structure Of Phosphodiesterase Treated
Vivid
Length = 149
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 39 SFLLANAQIVDFPIVYCNESFCKISGYNRAEV 70
+ +L + + D PIVY +E+F ++GY+ AEV
Sbjct: 37 ALILCDLKQKDTPIVYASEAFLYMTGYSNAEV 68
>pdb|4EER|A Chain A, Crystal Structure Of Lov2 Domain Of Arabidopsis Thaliana
Phototropin 2 C426a Mutant
Length = 115
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 9/34 (26%), Positives = 26/34 (76%)
Query: 37 DSSFLLANAQIVDFPIVYCNESFCKISGYNRAEV 70
+ +F++++ ++ D PI++ ++SF +++ Y+R E+
Sbjct: 7 EKNFVISDPRLPDNPIIFASDSFLELTEYSREEI 40
>pdb|3RH8|B Chain B, Crystal Structure Of The Light-State Dimer Of Fungal
Blue-Light Photoreceptor Vivid
pdb|3RH8|D Chain D, Crystal Structure Of The Light-State Dimer Of Fungal
Blue-Light Photoreceptor Vivid
Length = 148
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 39 SFLLANAQIVDFPIVYCNESFCKISGYNRAEV 70
+ +L + + D PIVY +E+F ++GY+ AEV
Sbjct: 36 ALILCDLKQKDTPIVYASEAFLYMTGYSNAEV 67
>pdb|3HJK|A Chain A, 2.0 Angstrom Structure Of The Ile74val Variant Of Vivid
(Vvd).
pdb|3HJK|B Chain B, 2.0 Angstrom Structure Of The Ile74val Variant Of Vivid
(Vvd)
Length = 154
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 39 SFLLANAQIVDFPIVYCNESFCKISGYNRAEV 70
+ +L + + D PIVY +E+F ++GY+ AEV
Sbjct: 40 ALVLCDLKQKDTPIVYASEAFLYMTGYSNAEV 71
>pdb|4EEP|A Chain A, Crystal Structure Of Lov2 Domain Of Arabidopsis Thaliana
Phototropin 2
Length = 115
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 9/34 (26%), Positives = 26/34 (76%)
Query: 37 DSSFLLANAQIVDFPIVYCNESFCKISGYNRAEV 70
+ +F++++ ++ D PI++ ++SF +++ Y+R E+
Sbjct: 7 EKNFVISDPRLPDNPIIFASDSFLELTEYSREEI 40
>pdb|2V0U|A Chain A, N- And C-terminal Helices Of Oat Lov2 (404-546) Are
Involved In Light-induced Signal Transduction (cryo
Dark Structure Of Lov2 (404-546))
pdb|2V0W|A Chain A, N- And C-Terminal Helices Of Oat Lov2 (404-546) Are
Involved In Light-Induced Signal Transduction (Cryo-
Trapped Light Structure Of Lov2 (404-546))
Length = 146
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 9/34 (26%), Positives = 25/34 (73%)
Query: 37 DSSFLLANAQIVDFPIVYCNESFCKISGYNRAEV 70
+ +F++ + ++ D PI++ ++SF +++ Y+R E+
Sbjct: 12 EKNFVITDPRLPDNPIIFASDSFLQLTEYSREEI 45
>pdb|2V1A|A Chain A, N- And C-Terminal Helices Of Oat Lov2 (404-546) Are
Involved In Light-Induced Signal Transduction (Room
Temperature (293k) Dark Structure Of Lov2 (404-546))
pdb|2V1B|A Chain A, N- And C-Terminal Helices Of Oat Lov2 (404-546) Are
Involved In Light-Induced Signal Transduction (Room
Temperature (293k) Light Structure Of Lov2 (404-546))
Length = 144
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 9/34 (26%), Positives = 25/34 (73%)
Query: 37 DSSFLLANAQIVDFPIVYCNESFCKISGYNRAEV 70
+ +F++ + ++ D PI++ ++SF +++ Y+R E+
Sbjct: 10 EKNFVITDPRLPDNPIIFASDSFLQLTEYSREEI 43
>pdb|2PR5|A Chain A, Structural Basis For Light-dependent Signaling In The
Dimeric Lov Photosensor Ytva (dark Structure)
pdb|2PR5|B Chain B, Structural Basis For Light-dependent Signaling In The
Dimeric Lov Photosensor Ytva (dark Structure)
pdb|2PR6|A Chain A, Structural Basis For Light-dependent Signaling In The
Dimeric Lov Photosensor Ytva (light Structure)
pdb|2PR6|B Chain B, Structural Basis For Light-dependent Signaling In The
Dimeric Lov Photosensor Ytva (light Structure)
Length = 132
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 35 HPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEV 70
H ++ + + D PIVY N+ F +++GY E+
Sbjct: 7 HVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEI 42
>pdb|3HJI|A Chain A, 1.8 Angstrom Crystal Structure Of The I74v:i85v Variant
Of Vivid (Vvd).
pdb|3HJI|B Chain B, 1.8 Angstrom Crystal Structure Of The I74v:i85v Variant
Of Vivid (Vvd)
Length = 154
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 39 SFLLANAQIVDFPIVYCNESFCKISGYNRAEV 70
+ +L + + D P+VY +E+F ++GY+ AEV
Sbjct: 40 ALVLCDLKQKDTPVVYASEAFLYMTGYSNAEV 71
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 9/34 (26%), Positives = 25/34 (73%)
Query: 37 DSSFLLANAQIVDFPIVYCNESFCKISGYNRAEV 70
+ +F++ + ++ D PI++ ++SF +++ Y+R E+
Sbjct: 21 EKNFVITDPRLPDNPIIFASDSFLQLTEYSREEI 54
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 9/34 (26%), Positives = 25/34 (73%)
Query: 37 DSSFLLANAQIVDFPIVYCNESFCKISGYNRAEV 70
+ +F++ + ++ D PI++ ++SF +++ Y+R E+
Sbjct: 21 EKNFVITDPRLPDNPIIFASDSFLQLTEYSREEI 54
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 9/34 (26%), Positives = 25/34 (73%)
Query: 37 DSSFLLANAQIVDFPIVYCNESFCKISGYNRAEV 70
+ +F++ + ++ D PI++ ++SF +++ Y+R E+
Sbjct: 21 EKNFVITDPRLPDNPIIFASDSFLQLTEYSREEI 54
>pdb|2Z6C|A Chain A, Crystal Structure Of Lov1 Domain Of Phototropin1 From
Arabidopsis Thaliana
pdb|2Z6C|B Chain B, Crystal Structure Of Lov1 Domain Of Phototropin1 From
Arabidopsis Thaliana
Length = 129
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 39 SFLLANAQIVDFPIVYCNESFCKISGYNRAEV 70
+F++++A D+PI+Y + F ++GY EV
Sbjct: 19 TFVVSDATKPDYPIMYASAGFFNMTGYTSKEV 50
>pdb|1G28|A Chain A, Structure Of A Flavin-Binding Domain, Lov2, From The
Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
pdb|1G28|B Chain B, Structure Of A Flavin-Binding Domain, Lov2, From The
Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
pdb|1G28|C Chain C, Structure Of A Flavin-Binding Domain, Lov2, From The
Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
pdb|1G28|D Chain D, Structure Of A Flavin-Binding Domain, Lov2, From The
Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
pdb|1JNU|A Chain A, Photoexcited Structure Of The Plant Photoreceptor
Domain, Phy3 Lov2
pdb|1JNU|B Chain B, Photoexcited Structure Of The Plant Photoreceptor
Domain, Phy3 Lov2
pdb|1JNU|C Chain C, Photoexcited Structure Of The Plant Photoreceptor
Domain, Phy3 Lov2
pdb|1JNU|D Chain D, Photoexcited Structure Of The Plant Photoreceptor
Domain, Phy3 Lov2
Length = 104
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 22/33 (66%)
Query: 38 SSFLLANAQIVDFPIVYCNESFCKISGYNRAEV 70
SF++ + ++ D PI++ ++ F +++ Y R EV
Sbjct: 1 KSFVITDPRLPDNPIIFASDRFLELTEYTREEV 33
>pdb|4EES|A Chain A, Crystal Structure Of Ilov
pdb|4EET|B Chain B, Crystal Structure Of Ilov
pdb|4EET|D Chain D, Crystal Structure Of Ilov
Length = 115
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 8/34 (23%), Positives = 24/34 (70%)
Query: 37 DSSFLLANAQIVDFPIVYCNESFCKISGYNRAEV 70
+ +F++ + ++ D PI++ ++ F +++ Y+R E+
Sbjct: 7 EKNFVITDPRLPDNPIIFASDGFLELTEYSREEI 40
>pdb|3ULF|A Chain A, The Light State Structure Of The Blue-light
Photoreceptor Aureochrome1 Lov
pdb|3ULF|B Chain B, The Light State Structure Of The Blue-light
Photoreceptor Aureochrome1 Lov
pdb|3ULF|C Chain C, The Light State Structure Of The Blue-light
Photoreceptor Aureochrome1 Lov
pdb|3ULF|D Chain D, The Light State Structure Of The Blue-light
Photoreceptor Aureochrome1 Lov
pdb|3ULF|E Chain E, The Light State Structure Of The Blue-light
Photoreceptor Aureochrome1 Lov
pdb|3ULF|F Chain F, The Light State Structure Of The Blue-light
Photoreceptor Aureochrome1 Lov
Length = 170
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 39 SFLLANAQIVDFPIVYCNESFCKISGYNRAEV 70
+F++ +A + D PIVY + F ++GY+ ++
Sbjct: 51 NFVITDASLPDNPIVYASRGFLTLTGYSLDQI 82
>pdb|3UE6|A Chain A, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3UE6|B Chain B, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3UE6|C Chain C, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3UE6|D Chain D, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3UE6|E Chain E, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3UE6|F Chain F, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
Length = 166
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 39 SFLLANAQIVDFPIVYCNESFCKISGYNRAEV 70
+F++ +A + D PIVY + F ++GY+ ++
Sbjct: 47 NFVITDASLPDNPIVYASRGFLTLTGYSLDQI 78
>pdb|3EWK|A Chain A, Structure Of The Redox Sensor Domain Of Methylococcus
Capsulatus (Bath) Mmos
Length = 227
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 52 IVYCNESFCKISGYNRAE-VPSDYDIPTYNLLVGSYLQSLY 91
I+Y N++FC +S Y R E V D+ I +Y++ ++
Sbjct: 11 ILYANDNFCAVSRYGREELVGQDHRIVNSGYHGKAYIRDMW 51
>pdb|2Z6D|A Chain A, Crystal Structure Of Lov1 Domain Of Phototropin2 From
Arabidopsis Thaliana
pdb|2Z6D|B Chain B, Crystal Structure Of Lov1 Domain Of Phototropin2 From
Arabidopsis Thaliana
Length = 130
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 39 SFLLANAQIVDFPIVYCNESFCKISGYNRAEV 70
+F++++A PIVY + F ++GY+ E+
Sbjct: 18 TFVVSDATQPHCPIVYASSGFFTMTGYSSKEI 49
>pdb|3SUC|A Chain A, Crystal Structure Of The Pre-Mature Bacteriophage Phi29
Gene Product 12
Length = 772
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 6 NKRGWRKNTAPEVELVRRTYMYDERQKNGHPDSSFLLANAQI-VDFPIVYCNESFCKISG 64
NKRG++ N P V V Y G+ D LL + V F C+ + ++G
Sbjct: 311 NKRGFQDNATPRVLAVSAYYGVVINGLTGYTDDPNLLTETVVSVQFRARNCSLNGVVLTG 370
Query: 65 YNRAE 69
++ +E
Sbjct: 371 FSNSE 375
>pdb|3GQ7|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene Product
12 N- Terminal Fragment
pdb|3GQ8|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene Product
12 N- Terminal Fragment In Complex With
2-(N-Cyclohexylamino)ethane Sulfonic Acid (Ches)
pdb|3GQ9|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene Product
12 N- Terminal Fragment In An Apo Form
pdb|3GQA|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene Product
12 N- Terminal Fragment In Complex With Cobalt Ions
Length = 609
Score = 25.8 bits (55), Expect = 7.0, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 6 NKRGWRKNTAPEVELVRRTYMYDERQKNGHPDSSFLLANAQI-VDFPIVYCNESFCKISG 64
NKRG++ N P V V Y G+ D LL + V F C+ + ++G
Sbjct: 311 NKRGFQDNATPRVLAVSAYYGVVINGLTGYTDDPNLLTETVVSVQFRARNCSLNGVVLTG 370
Query: 65 YNRAE 69
++ +E
Sbjct: 371 FSNSE 375
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,059,849
Number of Sequences: 62578
Number of extensions: 108301
Number of successful extensions: 241
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 209
Number of HSP's gapped (non-prelim): 38
length of query: 95
length of database: 14,973,337
effective HSP length: 62
effective length of query: 33
effective length of database: 11,093,501
effective search space: 366085533
effective search space used: 366085533
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)