Query psy17885
Match_columns 95
No_of_seqs 146 out of 1017
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 16:38:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17885.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17885hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ewk_A Sensor protein; PAS dom 99.3 4.8E-12 1.6E-16 88.1 6.8 78 2-86 85-163 (227)
2 1n9l_A PHOT-LOV1, putative blu 99.2 1.5E-11 5.3E-16 76.5 5.5 48 36-87 2-49 (109)
3 2gj3_A Nitrogen fixation regul 99.2 4.7E-11 1.6E-15 74.5 5.3 53 25-84 3-55 (120)
4 2pr5_A Blue-light photorecepto 99.1 9.3E-11 3.2E-15 74.2 5.6 53 30-86 2-54 (132)
5 2r78_A Sensor protein; sensory 99.1 1.3E-10 4.3E-15 72.9 4.7 45 26-73 10-54 (117)
6 1d06_A Nitrogen fixation regul 99.0 3.9E-10 1.3E-14 71.1 5.4 49 28-83 17-65 (130)
7 4hia_A LOV protein; PAS, HTH, 99.0 6.9E-10 2.4E-14 72.7 5.2 58 24-85 4-61 (176)
8 3mfx_A Sensory BOX/ggdef famil 98.9 2.4E-09 8.4E-14 70.3 6.7 47 24-73 4-50 (129)
9 3olo_A Two-component sensor hi 98.9 1.5E-09 5E-14 65.6 4.7 47 24-73 10-56 (118)
10 3p7n_A Sensor histidine kinase 98.9 4.5E-09 1.6E-13 73.8 6.3 56 27-86 63-118 (258)
11 3d72_A Vivid PAS protein VVD; 98.8 8.1E-10 2.8E-14 70.2 1.6 63 18-85 17-79 (149)
12 4eet_B Phototropin-2; LOV, blu 98.8 7E-09 2.4E-13 61.7 5.3 50 32-85 2-51 (115)
13 3bwl_A Sensor protein; structu 98.8 7.7E-09 2.6E-13 63.9 5.3 42 28-72 18-59 (126)
14 2l0w_A Potassium voltage-gated 98.8 1.7E-08 5.9E-13 61.0 6.6 58 24-85 16-75 (138)
15 2vv6_A FIXL, sensor protein FI 98.8 6E-09 2E-13 64.5 4.4 40 36-82 2-41 (119)
16 4hi4_A Aerotaxis transducer AE 98.8 1.9E-08 6.5E-13 63.3 6.4 45 26-73 4-60 (121)
17 3ue6_A Aureochrome1; PAS/LOV d 98.7 1.2E-08 4.2E-13 65.2 5.0 55 27-85 35-89 (166)
18 3t50_A Blue-light-activated hi 98.7 1.8E-08 6.3E-13 61.8 5.0 49 32-84 2-50 (128)
19 3luq_A Sensor protein; PAS, hi 98.7 4.3E-08 1.5E-12 58.2 5.8 43 28-73 4-46 (114)
20 3mqq_A Transcriptional regulat 98.7 1.1E-08 3.7E-13 63.2 3.2 48 29-84 5-52 (120)
21 3lyx_A Sensory BOX/ggdef domai 98.6 5.8E-08 2E-12 57.2 5.5 54 24-84 4-57 (124)
22 1ll8_A PAS kinase; PAS domain, 98.6 4.8E-08 1.6E-12 59.9 5.2 36 36-73 7-42 (114)
23 3fc7_A HTR-like protein, senso 98.6 2.9E-08 9.9E-13 60.5 4.1 46 25-73 17-62 (125)
24 3f1p_B ARYL hydrocarbon recept 98.6 4.6E-08 1.6E-12 60.4 4.6 41 30-73 5-45 (121)
25 2wkq_A NPH1-1, RAS-related C3 98.6 3.6E-08 1.2E-12 71.5 4.7 50 32-85 16-65 (332)
26 3vol_A Aerotaxis transducer AE 98.6 1.2E-07 4.1E-12 67.5 6.9 53 24-83 19-83 (233)
27 1byw_A Protein (human ERG pota 98.6 9.3E-08 3.2E-12 55.2 4.9 36 38-73 2-37 (110)
28 2kdk_A ARYL hydrocarbon recept 98.5 1.2E-07 4E-12 58.1 4.8 40 31-73 7-46 (121)
29 2vlg_A Sporulation kinase A; h 98.5 5.9E-08 2E-12 62.3 2.9 49 31-85 3-51 (111)
30 2z6d_A Phototropin-2; PAS-fold 98.5 1.7E-07 5.9E-12 55.3 4.3 51 28-82 7-57 (130)
31 3fg8_A Uncharacterized protein 98.5 1.2E-07 4.1E-12 59.2 3.6 41 30-73 15-55 (118)
32 2w0n_A Sensor protein DCUS; si 98.5 1.8E-07 6.1E-12 56.0 4.2 46 25-73 13-61 (118)
33 3mxq_A Sensor protein; PSI2, M 98.4 7.2E-08 2.5E-12 65.6 2.1 43 28-73 23-65 (152)
34 3b33_A Sensor protein; structu 98.4 2E-07 6.8E-12 56.7 3.5 42 29-73 9-50 (115)
35 3sw1_A Sensory box protein; li 98.4 3.2E-07 1.1E-11 58.4 4.4 56 24-83 22-77 (162)
36 3a0s_A Sensor protein; PAS-fol 98.4 3.8E-07 1.3E-11 51.6 3.9 34 37-73 2-35 (96)
37 3ewk_A Sensor protein; PAS dom 98.3 3.5E-07 1.2E-11 63.3 4.1 39 40-85 2-40 (227)
38 3kx0_X Uncharacterized protein 98.3 8.5E-07 2.9E-11 59.3 4.8 46 23-73 33-79 (185)
39 3f1p_A Endothelial PAS domain- 98.3 3.1E-07 1.1E-11 56.1 2.2 34 37-73 9-42 (117)
40 3mjq_A Uncharacterized protein 98.3 1.4E-07 4.9E-12 57.0 0.4 41 30-73 2-42 (126)
41 2v0u_A NPH1-1, LOV2; kinase, t 98.2 1.3E-06 4.6E-11 52.7 4.7 50 30-83 5-54 (146)
42 3k3c_A Protein RV1364C/MT1410; 98.2 6.4E-07 2.2E-11 57.2 3.3 46 23-73 13-59 (158)
43 1nwz_A PYP, photoactive yellow 98.2 1.2E-06 4E-11 59.1 4.7 41 30-73 20-60 (125)
44 1v9y_A Heme PAS sensor protein 98.2 2.1E-06 7E-11 54.2 5.3 43 28-73 41-83 (167)
45 2jhe_A Transcription regulator 98.2 1.9E-06 6.4E-11 57.6 4.2 46 25-73 78-123 (190)
46 3eeh_A Putative light and redo 98.2 1.6E-06 5.5E-11 51.2 3.5 46 26-73 10-55 (125)
47 3nja_A Probable ggdef family p 98.1 3.2E-06 1.1E-10 50.5 4.9 44 27-73 7-50 (125)
48 1mzu_A PPR; photoactive yellow 98.1 1.6E-06 5.3E-11 58.9 3.5 40 31-73 26-65 (129)
49 3a0r_A Sensor protein; four he 98.1 1.5E-06 5E-11 62.9 2.7 42 29-73 10-51 (349)
50 3icy_A Sensor protein; sensory 97.9 2.1E-06 7.3E-11 51.3 1.1 44 27-73 4-47 (118)
51 2qkp_A Uncharacterized protein 97.7 1.6E-05 5.5E-10 53.5 2.5 43 27-73 19-64 (151)
52 4eho_A Bacteriophytochrome, PA 97.6 2.6E-05 8.8E-10 63.3 3.2 42 29-73 520-561 (635)
53 3h9w_A Diguanylate cyclase wit 97.6 6.6E-05 2.2E-09 45.5 4.2 36 36-73 2-37 (115)
54 4f3l_A Mclock, circadian locom 97.6 2.5E-05 8.7E-10 59.0 2.6 49 31-85 90-138 (361)
55 4f3l_B BMAL1B; BHLH, PAS, circ 97.3 0.00021 7E-09 54.7 4.0 51 31-86 90-140 (387)
56 3mr0_A Sensory box histidine k 97.2 0.00015 5.3E-09 45.9 2.6 43 28-73 10-52 (142)
57 3cax_A Uncharacterized protein 97.1 0.00017 6E-09 54.7 2.4 44 25-73 237-280 (369)
58 3rty_A Period circadian protei 96.7 0.0014 4.9E-08 49.8 4.2 44 38-85 3-46 (339)
59 3rty_A Period circadian protei 96.5 0.0013 4.3E-08 50.1 2.8 36 48-86 162-197 (339)
60 4f3l_B BMAL1B; BHLH, PAS, circ 96.5 0.001 3.6E-08 50.7 2.0 34 48-84 286-319 (387)
61 4f3l_A Mclock, circadian locom 96.4 0.0013 4.3E-08 49.6 2.1 34 48-84 259-292 (361)
62 4dj3_A Period circadian protei 96.3 0.002 6.8E-08 48.6 2.8 38 47-87 181-218 (317)
63 4dj2_A Period circadian protei 96.3 0.0076 2.6E-07 45.5 5.9 47 33-84 31-78 (320)
64 4dj2_A Period circadian protei 96.0 0.0026 8.8E-08 48.1 2.0 38 46-86 182-219 (320)
65 3gdi_A Period circadian protei 96.0 0.0034 1.2E-07 47.1 2.6 47 36-87 23-70 (309)
66 2ykf_A Pdtas, probable sensor 94.9 0.0013 4.3E-08 49.0 0.0 36 34-73 177-215 (305)
67 3gdi_A Period circadian protei 95.9 0.0023 7.7E-08 48.1 1.3 37 47-86 172-208 (309)
68 4dj3_A Period circadian protei 95.6 0.0064 2.2E-07 45.8 2.7 48 34-86 32-80 (317)
69 4ew7_A Conjugative transfer: r 93.4 0.25 8.5E-06 32.8 6.0 40 21-63 14-53 (127)
70 2ool_A Sensor protein; bacteri 90.5 0.29 9.9E-06 37.3 4.3 35 37-73 41-76 (337)
71 3s7o_A Bacteriophytochrome; bi 62.6 4.9 0.00017 30.8 2.8 34 38-73 53-86 (343)
72 4e04_A Bacteriophytochrome (li 56.3 6.3 0.00021 29.9 2.4 35 37-73 28-62 (327)
73 3clo_A Transcriptional regulat 50.7 5 0.00017 28.3 1.0 33 36-70 42-74 (258)
74 3vol_A Aerotaxis transducer AE 48.5 11 0.00036 25.9 2.4 62 2-73 120-183 (233)
75 3zq5_A Phytochrome-like protei 45.7 9.4 0.00032 30.6 1.9 34 38-73 30-63 (520)
76 1oj5_A Steroid receptor coacti 42.0 3 0.0001 28.0 -1.2 39 44-86 11-51 (132)
77 8tfv_A Protein (thanatin); bac 37.6 9.3 0.00032 17.6 0.4 9 50-58 6-14 (21)
78 4eho_A Bacteriophytochrome, PA 33.7 50 0.0017 26.4 4.5 33 37-73 33-66 (635)
79 3v5w_A G-protein coupled recep 25.8 20 0.00069 29.7 0.9 34 50-87 4-37 (689)
80 3pxp_A Helix-turn-helix domain 20.5 1.1E+02 0.0038 22.4 4.0 35 27-64 99-133 (292)
No 1
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.30 E-value=4.8e-12 Score=88.08 Aligned_cols=78 Identities=17% Similarity=0.283 Sum_probs=65.0
Q ss_pred CCcCCccccee-ecccchhhhhhhhHHHHHHHhCCCCCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCCCCCCCcc
Q psy17885 2 NEMGNKRGWRK-NTAPEVELVRRTYMYDERQKNGHPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSDYDIPTYN 80 (95)
Q Consensus 2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~~~~~~~~ 80 (95)
++.|...|.++ ..+++.+...+..+..++++++..+++++++|.. +.|+|+|++|++++||+++|++|+ ++.
T Consensus 85 d~~g~~~~~~~~~~DIT~~k~~e~~l~~~~~~~~~~~~~i~~~d~~---g~i~~~N~~~~~~~G~~~~e~~g~----~~~ 157 (227)
T 3ewk_A 85 DNAGKPRQYISIRRDITAQKEAEAQLARLKQAMDANSEMILLTDRA---GRIIYANPALCRFSGMAEGELLGQ----SPS 157 (227)
T ss_dssp CSSSCEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCCSEEEEECTT---SCEEEECHHHHHHHTCCTHHHHSS----CGG
T ss_pred cCCCCEEEEEEEEEehhhHHHHHHHHHHHHHHHhcCcCeEEEEcCC---CcEEEEchHHHHHhCCCHHHHcCC----Chh
Confidence 35566667777 6777777777777788899999999999999977 799999999999999999999999 777
Q ss_pred cccCCC
Q psy17885 81 LLVGSY 86 (95)
Q Consensus 81 ~L~g~~ 86 (95)
.|..+.
T Consensus 158 ~l~~~~ 163 (227)
T 3ewk_A 158 ILDSPL 163 (227)
T ss_dssp GGBCTT
T ss_pred hccCCC
Confidence 776543
No 2
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=99.22 E-value=1.5e-11 Score=76.49 Aligned_cols=48 Identities=31% Similarity=0.582 Sum_probs=43.1
Q ss_pred CCCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCCCCCCCcccccCCCC
Q psy17885 36 PDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSDYDIPTYNLLVGSYL 87 (95)
Q Consensus 36 ~~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~~~~~~~~~L~g~~~ 87 (95)
.+++++|+|+..++++|+|+|++|++++||+.+|++|+ ++.+|+++..
T Consensus 2 ~~~~i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e~~G~----~~~~l~~~~~ 49 (109)
T 1n9l_A 2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGH----NCRFLQGEGT 49 (109)
T ss_dssp CSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTS----CGGGGCCTTC
T ss_pred CccEEEEEcCCCCCCeEEEEchHHHHHHCcCHHHHcCC----CchhcCCCCC
Confidence 57899999988777999999999999999999999999 8888877654
No 3
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=99.15 E-value=4.7e-11 Score=74.48 Aligned_cols=53 Identities=25% Similarity=0.335 Sum_probs=46.2
Q ss_pred hHHHHHHHhCCCCCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCCCCCCCcccccC
Q psy17885 25 YMYDERQKNGHPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSDYDIPTYNLLVG 84 (95)
Q Consensus 25 ~~~~~~~~~~~~~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~~~~~~~~~L~g 84 (95)
....++.+++.++++++++|.. +.|+|+|++|++++||+.+|++|+ ++..|..
T Consensus 3 ~~~~~~~~~~~~~~~i~~~d~~---g~i~~~N~a~~~~~G~~~~elig~----~~~~l~~ 55 (120)
T 2gj3_A 3 LPEIFRQTVEHAPIAISITDLK---ANILYANRAFRTITGYGSEEVLGK----NESILSN 55 (120)
T ss_dssp CHHHHHHHHHHCSSEEEEECTT---CBEEEECHHHHHHHCCCTTGGGGC----BGGGGCC
T ss_pred hHHHHHHHHHhCCCeEEEECCC---CCEEeehHHHHHHHCcCHHHHcCC----CHHHcCC
Confidence 3456788999999999999987 799999999999999999999999 6665544
No 4
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=99.12 E-value=9.3e-11 Score=74.22 Aligned_cols=53 Identities=25% Similarity=0.510 Sum_probs=43.0
Q ss_pred HHHhCCCCCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCCCCCCCcccccCCC
Q psy17885 30 RQKNGHPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSDYDIPTYNLLVGSY 86 (95)
Q Consensus 30 ~~~~~~~~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~~~~~~~~~L~g~~ 86 (95)
+.+++.++++++++|....+++|+|+|++|++++||+++|++|+ ++.+|.++.
T Consensus 2 ~~~~~~~~~~i~~~d~~g~~~~i~~~N~a~~~~~G~~~~el~g~----~~~~l~~~~ 54 (132)
T 2pr5_A 2 SHMLDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGK----NCRFLQGKH 54 (132)
T ss_dssp ----CCCCCEEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTS----CGGGGCCTT
T ss_pred hhHHhcCCCcEEEEeCCCCCCcEEEECHHHHHHhCcCHHHHcCC----ChhhhCCCC
Confidence 35789999999999987555799999999999999999999999 777665443
No 5
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=99.07 E-value=1.3e-10 Score=72.93 Aligned_cols=45 Identities=20% Similarity=0.237 Sum_probs=41.5
Q ss_pred HHHHHHHhCCCCCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCC
Q psy17885 26 MYDERQKNGHPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSD 73 (95)
Q Consensus 26 ~~~~~~~~~~~~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~ 73 (95)
-..++.++++++++++++|.. +.|+|||++|++++||+++|++|+
T Consensus 10 e~~~~~l~e~~~d~i~~~d~~---g~i~~vN~a~~~l~Gy~~~el~g~ 54 (117)
T 2r78_A 10 SNAYRALFEHAIDGIFIMDAE---GHYLDVNPAICSAIGYTRDEFLAL 54 (117)
T ss_dssp HHHHHHHHHHCSSEEEEECTT---SBEEEECHHHHHHHCCCHHHHTTC
T ss_pred HHHHHHHHhcCCceEEEECCC---CCEEEecHHHHHHHCcCHHHHcCC
Confidence 346788899999999999987 799999999999999999999999
No 6
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=99.02 E-value=3.9e-10 Score=71.12 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=43.8
Q ss_pred HHHHHhCCCCCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCCCCCCCccccc
Q psy17885 28 DERQKNGHPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSDYDIPTYNLLV 83 (95)
Q Consensus 28 ~~~~~~~~~~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~~~~~~~~~L~ 83 (95)
.++.+++.++++++++|.. +.|+++|++|++++||+++|++|+ ++..|.
T Consensus 17 ~~~~l~~~~~d~i~~~d~~---g~i~~~N~a~~~l~Gy~~~eliG~----~~~~l~ 65 (130)
T 1d06_A 17 HLRSILDTVPDATVVSATD---GTIVSFNAAAVRQFGYAEEEVIGQ----NLRILM 65 (130)
T ss_dssp CHHHHHTTCSSEEEEEETT---SBEEEECHHHHHHHCCCHHHHTTS----BGGGGS
T ss_pred HHHHHHhhCcCeEEEECCC---CeEEEEcHHHHHHHCCCHHHHcCC----cHHHHC
Confidence 4678999999999999987 799999999999999999999999 665553
No 7
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=98.97 E-value=6.9e-10 Score=72.70 Aligned_cols=58 Identities=16% Similarity=0.304 Sum_probs=50.7
Q ss_pred hhHHHHHHHhCCCCCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCCCCCCCcccccCC
Q psy17885 24 TYMYDERQKNGHPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSDYDIPTYNLLVGS 85 (95)
Q Consensus 24 ~~~~~~~~~~~~~~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~~~~~~~~~L~g~ 85 (95)
+....++.+++.++++++++|...+++.|+|+|++|++++||+.+|++|+ ++..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~----~~~~~~~~ 61 (176)
T 4hia_A 4 KQFEKIRAVFDRSGVALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGF----NCRFLQRG 61 (176)
T ss_dssp HHHHHHHHHHHHCSSCCEEEETTSTTCCEEEECHHHHHHHTCCHHHHTTS----CGGGGCCT
T ss_pred HHHHHHHHHHhcCCCcEEEEecCCCCCcEEEECHHHHHHHCcCHHHHcCC----CcceeeCC
Confidence 45677889999999999999988666899999999999999999999999 76655544
No 8
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=98.93 E-value=2.4e-09 Score=70.29 Aligned_cols=47 Identities=15% Similarity=0.141 Sum_probs=44.0
Q ss_pred hhHHHHHHHhCCCCCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCC
Q psy17885 24 TYMYDERQKNGHPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSD 73 (95)
Q Consensus 24 ~~~~~~~~~~~~~~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~ 73 (95)
..+..+.++++..+++++++|.. +.|+|+|++|++++||+++|++|+
T Consensus 4 ~~~~~l~~i~~~~~d~i~~~D~~---g~I~~~N~aa~~l~G~~~~el~G~ 50 (129)
T 3mfx_A 4 SSLETIELFIQHLTEAMILVNAN---GFIRSCNQRSAELLDCPQVSLKGQ 50 (129)
T ss_dssp HHHHHHHHHHTTCSSEEEEEETT---SBEEEECHHHHHHTTSCHHHHTTS
T ss_pred hhHHHHHHHHhcCCceEEEECCC---CEEEeEhHHHHHHHCcCHHHHcCC
Confidence 35678899999999999999987 799999999999999999999999
No 9
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=98.91 E-value=1.5e-09 Score=65.55 Aligned_cols=47 Identities=13% Similarity=0.237 Sum_probs=42.5
Q ss_pred hhHHHHHHHhCCCCCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCC
Q psy17885 24 TYMYDERQKNGHPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSD 73 (95)
Q Consensus 24 ~~~~~~~~~~~~~~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~ 73 (95)
.....++.+++.++++++++|.. +.|+|+|++|++++||+++|++|+
T Consensus 10 ~~~~~~~~~~~~~~~~i~~~d~~---g~i~~~N~~~~~l~G~~~~el~g~ 56 (118)
T 3olo_A 10 LEFKFAHYLINNAVEASFCLGDN---WQFLYVNDATCRMTEYSREQLLSM 56 (118)
T ss_dssp HHHHHHHHHHHHCSSEEEEECTT---SBEEEECHHHHHHHCCCHHHHTTC
T ss_pred HHHHHHHHHHhcCCceEEEECCC---CcEEEEHHHHHHHHCCCHHHHhCC
Confidence 44556778899999999999976 799999999999999999999999
No 10
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=98.85 E-value=4.5e-09 Score=73.81 Aligned_cols=56 Identities=18% Similarity=0.297 Sum_probs=47.8
Q ss_pred HHHHHHhCCCCCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCCCCCCCcccccCCC
Q psy17885 27 YDERQKNGHPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSDYDIPTYNLLVGSY 86 (95)
Q Consensus 27 ~~~~~~~~~~~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~~~~~~~~~L~g~~ 86 (95)
..++.+++.++++++++|....++.|+|+|++|++++||+++|++|+ ++..|..+.
T Consensus 63 ~~~~~i~~~~~~~i~~~d~~~~~g~i~~~N~a~~~l~G~~~~el~g~----~~~~l~~~~ 118 (258)
T 3p7n_A 63 QWVLDLIEASPIASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGR----NCRFLAGSG 118 (258)
T ss_dssp HHHHHHHHTCSSEEEEECTTSTTCCEEEECHHHHHHHCCCGGGTTTS----CGGGGCCTT
T ss_pred HHHHHHHhcCCccEEEEcCCCCCCcEEEEhHHHHHHcCCCHHHHCCC----ChhhccCCC
Confidence 45788999999999999995434789999999999999999999999 776665443
No 11
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=98.83 E-value=8.1e-10 Score=70.22 Aligned_cols=63 Identities=25% Similarity=0.420 Sum_probs=48.7
Q ss_pred hhhhhhhhHHHHHHHhCCCCCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCCCCCCCcccccCC
Q psy17885 18 VELVRRTYMYDERQKNGHPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSDYDIPTYNLLVGS 85 (95)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~~~~~~~~~L~g~ 85 (95)
.++++++..+....+++.. ++++++|..+.++.|+|+|++|++++||+++|++|+ ++..+..+
T Consensus 17 ~~~~~r~~~~~~~~~~~~~-~~i~~~d~~d~~g~i~~~N~a~~~l~G~~~~el~g~----~~~~l~~~ 79 (149)
T 3d72_A 17 IQIMNRPNPQVELGPVDTS-VALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGR----NCRFLQSP 79 (149)
T ss_dssp HHHHHCSSCSSCCCSCCTT-SCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTS----CGGGGGST
T ss_pred ehhhhCcchhHHHHhhcCC-ccEEEEeccCCCCcEEEECHHHHHHHCcCHHHHcCC----ChhHhCCc
Confidence 4555555544445667774 999999965556899999999999999999999999 76655543
No 12
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=98.81 E-value=7e-09 Score=61.68 Aligned_cols=50 Identities=20% Similarity=0.539 Sum_probs=40.2
Q ss_pred HhCCCCCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCCCCCCCcccccCC
Q psy17885 32 KNGHPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSDYDIPTYNLLVGS 85 (95)
Q Consensus 32 ~~~~~~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~~~~~~~~~L~g~ 85 (95)
.++..+++++++|...+++.|+|+|++|++++||+++|++|+ ++..+..+
T Consensus 2 ~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~----~~~~~~~~ 51 (115)
T 4eet_B 2 SPEFIEKNFVITDPRLPDNPIIFASDGFLELTEYSREEILGR----NARFLQGP 51 (115)
T ss_dssp ---CCCCSEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTS----CGGGGCCT
T ss_pred ccccCCCcEEEEcCCCCCCcEEEEcHHHHHHHCcCHHHHhCC----CHHHhcCC
Confidence 467889999999995444899999999999999999999999 66655443
No 13
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=98.80 E-value=7.7e-09 Score=63.89 Aligned_cols=42 Identities=21% Similarity=0.257 Sum_probs=38.3
Q ss_pred HHHHHhCCCCCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCC
Q psy17885 28 DERQKNGHPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPS 72 (95)
Q Consensus 28 ~~~~~~~~~~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG 72 (95)
.++.+++.++++++++|.. +.|+|+|++|++++||+++|++|
T Consensus 18 ~~~~l~e~~~~~i~~~d~~---g~i~~~N~a~~~~~G~~~~el~g 59 (126)
T 3bwl_A 18 RLEALFENSPDMIDVLDAD---GTICEVNQRFCAELGYDESEVLG 59 (126)
T ss_dssp HHHHHHHHCSSEEEEECTT---CBEEEECHHHHHHHTCCGGGTTT
T ss_pred HHHHHHhhCCcEEEEEcCC---CCEEEEcHHHHHHhCCCHHHHhh
Confidence 5677899999999999987 79999999999999999999954
No 14
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=98.79 E-value=1.7e-08 Score=60.97 Aligned_cols=58 Identities=33% Similarity=0.704 Sum_probs=48.5
Q ss_pred hhHHHHHHHhCCCCCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCCCCCCC--cccccCC
Q psy17885 24 TYMYDERQKNGHPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSDYDIPT--YNLLVGS 85 (95)
Q Consensus 24 ~~~~~~~~~~~~~~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~~~~~~--~~~L~g~ 85 (95)
.+++.+.+.++..+++++++|...+++.|+|+|++|++++||+.++++|+ + ..++..+
T Consensus 16 ~~l~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~~~~g~----~~~~~~~~~~ 75 (138)
T 2l0w_A 16 TFLDTIIRKFEGQSRKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQR----PCTCDFLHGP 75 (138)
T ss_dssp SHHHHHHHHHTTTTSEEEEEESSSTTCBEEEECSHHHHHHSCCHHHHTTS----BTTCGGGCCT
T ss_pred HHHHHHHHHHhcCCCCEEEEecCCCCCEEEEeCHHHHHHhCCCHHHHcCC----CCcccccCCc
Confidence 46778889999999999999983333799999999999999999999999 6 4555443
No 15
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=98.78 E-value=6e-09 Score=64.50 Aligned_cols=40 Identities=13% Similarity=0.202 Sum_probs=35.8
Q ss_pred CCCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCCCCCCCcccc
Q psy17885 36 PDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSDYDIPTYNLL 82 (95)
Q Consensus 36 ~~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~~~~~~~~~L 82 (95)
++++++++|.. +.|+|+|++|++++||+++|++|+ ++..|
T Consensus 2 ~~d~i~~~d~~---g~i~~~N~a~~~l~G~~~~el~G~----~~~~l 41 (119)
T 2vv6_A 2 IPDAMIVIDGH---GIIQLFSTAAERLFGWSELEAIGQ----NVNIL 41 (119)
T ss_dssp CCCEEEEEETT---SBEEEECHHHHHHHCCCHHHHTTS----BGGGG
T ss_pred CcceEEEECCC---CeEEEEhHHHHHHhCCCHHHHcCC----CHHHh
Confidence 57899999987 799999999999999999999999 65544
No 16
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=98.76 E-value=1.9e-08 Score=63.29 Aligned_cols=45 Identities=13% Similarity=0.331 Sum_probs=42.1
Q ss_pred HHHHHHHhCCCCCeEEEEecCCCCCcEEEEchHHHHhhC------------CCccccCCC
Q psy17885 26 MYDERQKNGHPDSSFLLANAQIVDFPIVYCNESFCKISG------------YNRAEVPSD 73 (95)
Q Consensus 26 ~~~~~~~~~~~~~gi~I~d~~~~~~~I~yvN~aF~~mtG------------Ys~~EliG~ 73 (95)
+.+++.++++.+++++++|.. ++|+|+|++|++++| |+.++++|+
T Consensus 4 ~~rl~~il~~~~~gviv~D~~---g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~ 60 (121)
T 4hi4_A 4 MARIASALDNVSANVMIADND---LNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGA 60 (121)
T ss_dssp HHHHHHHHTTSSSEEEEEETT---CBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTC
T ss_pred HHHHHHHHhcCCccEEEEcCC---CeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCC
Confidence 567899999999999999988 799999999999985 999999999
No 17
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=98.74 E-value=1.2e-08 Score=65.19 Aligned_cols=55 Identities=24% Similarity=0.506 Sum_probs=46.2
Q ss_pred HHHHHHhCCCCCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCCCCCCCcccccCC
Q psy17885 27 YDERQKNGHPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSDYDIPTYNLLVGS 85 (95)
Q Consensus 27 ~~~~~~~~~~~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~~~~~~~~~L~g~ 85 (95)
..+..+++..+++++++|...+++.|+|+|++|++++||+++|++|+ ++..+..+
T Consensus 35 ~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~g~----~~~~l~~~ 89 (166)
T 3ue6_A 35 YSLVKALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGR----NCRFLQGP 89 (166)
T ss_dssp CHHHHHHHHTTSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTS----CGGGGCCT
T ss_pred HHHHHHHhcCCceEEEEEccCCCCcEEEECHHHHHHhCcCHHHHcCC----CHhheeCC
Confidence 35678899999999999985444899999999999999999999999 66655443
No 18
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=98.71 E-value=1.8e-08 Score=61.79 Aligned_cols=49 Identities=31% Similarity=0.546 Sum_probs=41.5
Q ss_pred HhCCCCCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCCCCCCCcccccC
Q psy17885 32 KNGHPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSDYDIPTYNLLVG 84 (95)
Q Consensus 32 ~~~~~~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~~~~~~~~~L~g 84 (95)
+++.++++++++|...+++.|+|+|++|++++||+.+|++|+ ++..+..
T Consensus 2 ~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~e~~g~----~~~~~~~ 50 (128)
T 3t50_A 2 ASEFTLMPMLITNPHLPDNPIVFANPAFLKLTGYEADEVMGR----NCRFLQG 50 (128)
T ss_dssp CCCCCSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTS----CGGGGCC
T ss_pred ccccCcccEEEecCCCCCCcEEEEcHHHHHHhCcCHHHHcCC----CHhhhcC
Confidence 578899999999985334799999999999999999999999 6554443
No 19
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=98.68 E-value=4.3e-08 Score=58.24 Aligned_cols=43 Identities=7% Similarity=0.115 Sum_probs=40.2
Q ss_pred HHHHHhCCCCCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCC
Q psy17885 28 DERQKNGHPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSD 73 (95)
Q Consensus 28 ~~~~~~~~~~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~ 73 (95)
.++.+++..++++++.|.. +.|+++|++|++++||++++++|+
T Consensus 4 ~~~~~~~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~g~ 46 (114)
T 3luq_A 4 RLRLFTEHAPAALAMFDRE---MRYLAVSRRWREDYGLGDGDILGM 46 (114)
T ss_dssp HHHHHHHTCSSEEEEEETT---CBEEEECHHHHHHTTCCSSCCTTC
T ss_pred HHHHHHhcCCceEEEEcCC---cEEEEECHHHHHHHCCCHHHHcCC
Confidence 4678899999999999977 799999999999999999999999
No 20
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=98.68 E-value=1.1e-08 Score=63.23 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=39.9
Q ss_pred HHHHhCCCCCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCCCCCCCcccccC
Q psy17885 29 ERQKNGHPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSDYDIPTYNLLVG 84 (95)
Q Consensus 29 ~~~~~~~~~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~~~~~~~~~L~g 84 (95)
++.+++.+++++++ +.. +.|++||++|++|+||+++|++|+ ++..+..
T Consensus 5 ~~~~~~~~~~~i~~-~~~---g~i~~~N~a~~~l~G~~~~el~g~----~~~~~~~ 52 (120)
T 3mqq_A 5 YKTAFHLAPIGLVL-SRD---RVIEDCNDELAAIFRCARADLIGR----SFEVLYP 52 (120)
T ss_dssp HHHHHHHCSSEEEE-EET---TEEEEECHHHHHHTTSCHHHHTTC----BGGGGSS
T ss_pred HHHHHhcCCceEEE-ecC---CEEHHHHHHHHHHhCcCHHHhCCC----chhhccC
Confidence 46788899999965 544 799999999999999999999999 6554543
No 21
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=98.64 E-value=5.8e-08 Score=57.19 Aligned_cols=54 Identities=13% Similarity=0.116 Sum_probs=46.6
Q ss_pred hhHHHHHHHhCCCCCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCCCCCCCcccccC
Q psy17885 24 TYMYDERQKNGHPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSDYDIPTYNLLVG 84 (95)
Q Consensus 24 ~~~~~~~~~~~~~~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~~~~~~~~~L~g 84 (95)
.....++.+++..+++++++|.. +.|+++|++|++++||+.++++|+ ++..+..
T Consensus 4 ~~~~~~~~~~~~~~~~i~~~d~~---~~i~~~N~~~~~~~g~~~~~~~g~----~~~~~~~ 57 (124)
T 3lyx_A 4 DILKQRAKAFDYVFDAIVVTDLQ---GFIIDWNKGSETLYGYSKEQAIGQ----PVNMLHV 57 (124)
T ss_dssp CHHHHHHHGGGTCSSEEEEEETT---CBEEEECHHHHHHHCCCHHHHTTS----BGGGGSC
T ss_pred hHHHHHHHHHhhcCceEEEECCC---CcEeehhhHHHHHhCCCHHHHcCC----CHHHhcC
Confidence 34567889999999999999987 799999999999999999999999 5554443
No 22
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=98.64 E-value=4.8e-08 Score=59.91 Aligned_cols=36 Identities=17% Similarity=0.398 Sum_probs=32.3
Q ss_pred CCCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCC
Q psy17885 36 PDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSD 73 (95)
Q Consensus 36 ~~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~ 73 (95)
.+++++++|... +.|+++|++|++++||+++|++|+
T Consensus 7 ~~~~i~~~d~~~--g~I~~~N~aa~~l~G~~~~el~g~ 42 (114)
T 1ll8_A 7 FNKAIFTVDAKT--TEILVANDKACGLLGYSSQDLIGQ 42 (114)
T ss_dssp TTCEEEEEETTT--CBEEEECTTHHHHHTCCTTTTTTS
T ss_pred CCceEEEEECCC--CeEEEehHHHHHHhCCCHHHHcCC
Confidence 457999999752 599999999999999999999999
No 23
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=98.63 E-value=2.9e-08 Score=60.46 Aligned_cols=46 Identities=9% Similarity=-0.015 Sum_probs=36.0
Q ss_pred hHHHHHHHhCCCCCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCC
Q psy17885 25 YMYDERQKNGHPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSD 73 (95)
Q Consensus 25 ~~~~~~~~~~~~~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~ 73 (95)
.-..++.+++..+++++++|.. +.|+++|++|++++||++++++|+
T Consensus 17 ~~~~~~~i~~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~g~ 62 (125)
T 3fc7_A 17 TRKKFESLVSDSPDGIVHLTTN---GTILSVNPSMAGRLGADPDTLVGQ 62 (125)
T ss_dssp ---------CCSCCEEEEEETT---SBEEEECHHHHHHHTSCHHHHTTS
T ss_pred HHHHHHHHHhcCCCeEEEEcCC---CeEEEECHHHHHHhCCCHHHHcCc
Confidence 4456788999999999999987 799999999999999999999999
No 24
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=98.61 E-value=4.6e-08 Score=60.42 Aligned_cols=41 Identities=12% Similarity=0.135 Sum_probs=36.1
Q ss_pred HHHhCCCCCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCC
Q psy17885 30 RQKNGHPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSD 73 (95)
Q Consensus 30 ~~~~~~~~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~ 73 (95)
..+++.+++.+++.|.. +.|+|+|++|++++||+++|++|+
T Consensus 5 ~ll~e~~~d~i~~~d~~---g~i~~~n~~~~~~~G~~~~el~g~ 45 (121)
T 3f1p_B 5 GLNVCQPTRFISRHNIE---GIFTFVDHRCVATVGYQPQELLGK 45 (121)
T ss_dssp ---CCCCCEEEEEECTT---SBEEEECTTHHHHHSCCGGGTTTS
T ss_pred cceecCCCceEEEECCC---ceEEEECcchhhhhCCChHHHcCC
Confidence 34688899999999987 799999999999999999999999
No 25
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.60 E-value=3.6e-08 Score=71.49 Aligned_cols=50 Identities=22% Similarity=0.543 Sum_probs=43.0
Q ss_pred HhCCCCCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCCCCCCCcccccCC
Q psy17885 32 KNGHPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSDYDIPTYNLLVGS 85 (95)
Q Consensus 32 ~~~~~~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~~~~~~~~~L~g~ 85 (95)
+++.++++++++|++.+++.|+|||++|++++||+++|++|+ ++..|..+
T Consensus 16 ~~~~~~~~i~~~D~~~~~g~i~~~N~a~~~l~G~~~~el~G~----~~~~l~~~ 65 (332)
T 2wkq_A 16 TLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGR----NARFLQGP 65 (332)
T ss_dssp CGGGCCSEEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTS----CGGGGCCT
T ss_pred HhhcCCCcEEEecCCCCCCCEEEeehHHHHHhCCCHHHHcCC----CchhhcCC
Confidence 467889999999995445899999999999999999999999 77666543
No 26
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=98.59 E-value=1.2e-07 Score=67.46 Aligned_cols=53 Identities=9% Similarity=0.283 Sum_probs=46.5
Q ss_pred hhHHHHHHHhCCCCCeEEEEecCCCCCcEEEEchHHHHhh------------CCCccccCCCCCCCCccccc
Q psy17885 24 TYMYDERQKNGHPDSSFLLANAQIVDFPIVYCNESFCKIS------------GYNRAEVPSDYDIPTYNLLV 83 (95)
Q Consensus 24 ~~~~~~~~~~~~~~~gi~I~d~~~~~~~I~yvN~aF~~mt------------GYs~~EliG~~~~~~~~~L~ 83 (95)
.....++.++++.+++++++|+. ++|+|+|++|++++ ||+.+|++|+ ++..|.
T Consensus 19 ~e~~~l~~iLd~~~~~vii~D~~---g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~----~~~~~~ 83 (233)
T 3vol_A 19 SHMARIKSALDNVSANVMIADND---LNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGA----NIDVFH 83 (233)
T ss_dssp THHHHHHHHHTTSSSEEEEEETT---SBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTC----BGGGGS
T ss_pred HHHHHHHHHHhcCCCcEEEECCC---CcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCC----CHHHHc
Confidence 35667888999999999999988 79999999999988 8999999999 666554
No 27
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=98.57 E-value=9.3e-08 Score=55.17 Aligned_cols=36 Identities=42% Similarity=0.993 Sum_probs=33.9
Q ss_pred CeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCC
Q psy17885 38 SSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSD 73 (95)
Q Consensus 38 ~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~ 73 (95)
.+++++|....++.|+|+|++|++++||+.+|++|+
T Consensus 2 ~~i~i~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~ 37 (110)
T 1byw_A 2 RKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQR 37 (110)
T ss_dssp CEEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTS
T ss_pred CCEEEEeccCCCCcEEEECHHHHHHhCCCHHHHccC
Confidence 688999998777999999999999999999999999
No 28
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=98.53 E-value=1.2e-07 Score=58.07 Aligned_cols=40 Identities=20% Similarity=0.202 Sum_probs=36.6
Q ss_pred HHhCCCCCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCC
Q psy17885 31 QKNGHPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSD 73 (95)
Q Consensus 31 ~~~~~~~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~ 73 (95)
.+++.+++.+++.|.. +.|+|+|++|++++||+.+|++|+
T Consensus 7 ~~~~~~~~~i~~~d~~---g~i~~~N~~~~~~~G~~~~el~g~ 46 (121)
T 2kdk_A 7 EINVKPTEFITRFAVN---GKFVYVDQRATAILGYLPQELLGT 46 (121)
T ss_dssp CCCCCSSEEEEEECTT---SBEEEECTHHHHHTCCCTTTSBTS
T ss_pred ccccCCccEEEEECCC---eeEEEEChhHHHHHCCCHHHHcCC
Confidence 3567889999999987 799999999999999999999999
No 29
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=98.49 E-value=5.9e-08 Score=62.31 Aligned_cols=49 Identities=12% Similarity=0.080 Sum_probs=36.4
Q ss_pred HHhCCCCCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCCCCCCCcccccCC
Q psy17885 31 QKNGHPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSDYDIPTYNLLVGS 85 (95)
Q Consensus 31 ~~~~~~~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~~~~~~~~~L~g~ 85 (95)
.++++.++.++++|.. +.|+|+|+++++++||+.+|++|++ -..+++++
T Consensus 3 ~lle~~~d~i~v~d~~---G~i~yvn~~~~~~lGy~~~el~G~~---~~~~ihp~ 51 (111)
T 2vlg_A 3 FPLQTKTDIHAVLASN---GRIIYISANSKLHLGYLQGEMIGSF---LKTFLHEE 51 (111)
T ss_dssp ------CCEEEEECTT---SBEEEECTTHHHHHSCCHHHHTTSB---GGGGBCGG
T ss_pred chhhcCCCEEEEEcCC---CeEEEEChHHHHHhCCCHHHHcCCc---HHHeECHh
Confidence 3577889999999976 7999999999999999999999993 34455543
No 30
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=98.47 E-value=1.7e-07 Score=55.33 Aligned_cols=51 Identities=22% Similarity=0.477 Sum_probs=43.0
Q ss_pred HHHHHhCCCCCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCCCCCCCcccc
Q psy17885 28 DERQKNGHPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSDYDIPTYNLL 82 (95)
Q Consensus 28 ~~~~~~~~~~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~~~~~~~~~L 82 (95)
.++.+++..+++++++|..+.++.|+|+|++|++++||+.++++|+ ++..+
T Consensus 7 ~~~~~~~~~~~~i~~~d~~d~~~~i~~~N~~~~~~~g~~~~~~~g~----~~~~~ 57 (130)
T 2z6d_A 7 ELKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGR----NCRFL 57 (130)
T ss_dssp CHHHHHHHTTCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTS----CGGGG
T ss_pred HHHHHHHhcccceeeeeccCCCCcEEEecHHHHHHhCcCHHHHcCC----Chhhc
Confidence 4577888899999999954444899999999999999999999999 65444
No 31
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=98.46 E-value=1.2e-07 Score=59.18 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=38.6
Q ss_pred HHHhCCCCCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCC
Q psy17885 30 RQKNGHPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSD 73 (95)
Q Consensus 30 ~~~~~~~~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~ 73 (95)
+.++++++++++++|.. +.|+++|++|++++||+++|++|+
T Consensus 15 ~~il~~~~~~i~~~D~~---g~i~~~N~a~~~l~g~~~~e~~G~ 55 (118)
T 3fg8_A 15 ENLYFQGGLGFMALDED---LRIIYVNSGCLRHVRRSRDELLGR 55 (118)
T ss_dssp CCSSSCTTCEEEEECTT---CBEEEECHHHHHHHTCCHHHHTTS
T ss_pred HHHHhhCCceEEEECCC---CeEEEECHHHHHHhCCCHHHHcCC
Confidence 46789999999999977 799999999999999999999999
No 32
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=98.46 E-value=1.8e-07 Score=55.99 Aligned_cols=46 Identities=9% Similarity=0.073 Sum_probs=41.6
Q ss_pred hHHHHHHHhCCCCCeEEEEecCCCCCcEEEEchHHHHhhCC---CccccCCC
Q psy17885 25 YMYDERQKNGHPDSSFLLANAQIVDFPIVYCNESFCKISGY---NRAEVPSD 73 (95)
Q Consensus 25 ~~~~~~~~~~~~~~gi~I~d~~~~~~~I~yvN~aF~~mtGY---s~~EliG~ 73 (95)
....++.+++..+++++++|.. +.|+++|++|++++|| +.++++|+
T Consensus 13 ~~~~~~~il~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~~~~g~ 61 (118)
T 2w0n_A 13 LFEQRQAMLQSIKEGVVAVDDR---GEVTLINDAAQELLNYRKSQDDEKLST 61 (118)
T ss_dssp THHHHHHHHHCCCCCCEEEBTT---TBCCCBCHHHHHHHCSCTTTTTSSCCC
T ss_pred HHHHHHHHHhhccccEEEECCC---CcEeehhHHHHHHhCCCccChhhhhcc
Confidence 4456688999999999999987 7999999999999998 89999999
No 33
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=98.42 E-value=7.2e-08 Score=65.60 Aligned_cols=43 Identities=12% Similarity=0.084 Sum_probs=40.5
Q ss_pred HHHHHhCCCCCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCC
Q psy17885 28 DERQKNGHPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSD 73 (95)
Q Consensus 28 ~~~~~~~~~~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~ 73 (95)
.+..++++.++|++++|.. +.|+++|++|++++|++++|++|+
T Consensus 23 ~l~~il~~~~~gi~v~D~~---g~I~~~N~a~~~~~G~~~~eviG~ 65 (152)
T 3mxq_A 23 LLSELLDQLSFALCIVRND---YVIVKVNEYFESRVIFDGETMQGK 65 (152)
T ss_dssp HHHHHHHHHCCEEEEEETT---SBEEEECHHHHHTSSSCHHHHTTS
T ss_pred HHHHHHhcCCCCEEEEcCC---CEEEEECHHHHHHHCcCHHHHCCC
Confidence 5578899999999999988 799999999999999999999999
No 34
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.40 E-value=2e-07 Score=56.70 Aligned_cols=42 Identities=10% Similarity=0.067 Sum_probs=38.9
Q ss_pred HHHHhCCCCCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCC
Q psy17885 29 ERQKNGHPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSD 73 (95)
Q Consensus 29 ~~~~~~~~~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~ 73 (95)
...+++..+++++++|.. +.|+|+|+++++++||+.++++|+
T Consensus 9 ~~~il~~~~~~i~~~D~~---g~I~~~N~aa~~l~g~~~~~~~g~ 50 (115)
T 3b33_A 9 PSAILNNMVTATLILDDG---LAIRYANPAAELLFSQSAKRIVEQ 50 (115)
T ss_dssp HHHHHHHCSSEEEEECTT---CBEEEECHHHHHHTTSCHHHHTTC
T ss_pred HHHHHhhcCceEEEECCC---CcEEEECHHHHHHhCCCHHHHhCC
Confidence 345888999999999988 799999999999999999999999
No 35
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=98.39 E-value=3.2e-07 Score=58.42 Aligned_cols=56 Identities=18% Similarity=0.261 Sum_probs=46.5
Q ss_pred hhHHHHHHHhCCCCCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCCCCCCCccccc
Q psy17885 24 TYMYDERQKNGHPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSDYDIPTYNLLV 83 (95)
Q Consensus 24 ~~~~~~~~~~~~~~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~~~~~~~~~L~ 83 (95)
.....++.+++..+++++++|....+..|+++|++|++++||+.++++|+ ++..+.
T Consensus 22 ~~~~~~~~i~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~----~~~~~~ 77 (162)
T 3sw1_A 22 INAQLLQSMVDASNDGIVVAEKEGDDTILIYVNAAFEYLTGYSRDEILYQ----DCRFLQ 77 (162)
T ss_dssp CCHHHHHHHHHTCSSEEEEEEEETTEEEEEEECHHHHHHHTCCHHHHTTS----BGGGGT
T ss_pred chHHHHHHHHhhccCcEEEEeCCCCccEEEEECHHHHHHHCCCHHHHcCC----Ccceec
Confidence 45567788999999999999988222299999999999999999999999 655444
No 36
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=98.37 E-value=3.8e-07 Score=51.60 Aligned_cols=34 Identities=12% Similarity=0.156 Sum_probs=32.1
Q ss_pred CCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCC
Q psy17885 37 DSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSD 73 (95)
Q Consensus 37 ~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~ 73 (95)
+++++++|.. +.|+++|++|++++||+.++++|+
T Consensus 2 ~~~i~~~d~~---g~i~~~N~~~~~l~g~~~~~~~g~ 35 (96)
T 3a0s_A 2 ETAIITLSKD---GRITEWNKKAEQLFGLKKENVLGR 35 (96)
T ss_dssp CCEEEEEETT---SBEEEECHHHHHHHCCCHHHHTTS
T ss_pred CceEEEEcCC---CCEeehhHHHHHHhCCCHHHhcCC
Confidence 6789999987 799999999999999999999999
No 37
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=98.35 E-value=3.5e-07 Score=63.26 Aligned_cols=39 Identities=26% Similarity=0.531 Sum_probs=33.6
Q ss_pred EEEEecCCCCCcEEEEchHHHHhhCCCccccCCCCCCCCcccccCC
Q psy17885 40 FLLANAQIVDFPIVYCNESFCKISGYNRAEVPSDYDIPTYNLLVGS 85 (95)
Q Consensus 40 i~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~~~~~~~~~L~g~ 85 (95)
++++|.. +.|+|||++|++++||+++|++|+ ++..+..+
T Consensus 2 i~i~D~~---g~i~~~N~a~~~l~Gy~~~el~G~----~~~~~~~~ 40 (227)
T 3ewk_A 2 VSITDLQ---GRILYANDNFCAVSRYGREELVGQ----DHRIVNSG 40 (227)
T ss_dssp EEEEETT---CBEEEECHHHHHHTTCCHHHHTTS----BGGGGCCS
T ss_pred EEEECCC---CcEEehHHHHHHHHCcCHHHHcCC----CHHHcCCC
Confidence 6788877 799999999999999999999999 76666543
No 38
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=98.28 E-value=8.5e-07 Score=59.35 Aligned_cols=46 Identities=13% Similarity=0.041 Sum_probs=41.7
Q ss_pred hhhHHHHHHHhCCCCCeEEEEe-cCCCCCcEEEEchHHHHhhCCCccccCCC
Q psy17885 23 RTYMYDERQKNGHPDSSFLLAN-AQIVDFPIVYCNESFCKISGYNRAEVPSD 73 (95)
Q Consensus 23 ~~~~~~~~~~~~~~~~gi~I~d-~~~~~~~I~yvN~aF~~mtGYs~~EliG~ 73 (95)
....+.++.+++.++++++++| .. +.|+|+|++|++++||+ +++|+
T Consensus 33 ~~~~~~l~~l~~~~~~~i~~~d~~~---g~i~~~N~a~~~l~G~~--~~~G~ 79 (185)
T 3kx0_X 33 VGAAEDVRRIFEHIPAILVGLEGPD---HRFVAVNAAYRGFSPLL--DTVGQ 79 (185)
T ss_dssp TCCHHHHHHHHHHCSSEEEEEETTT---TEEEEECHHHHHHCCCC--SCTTS
T ss_pred hhhHHHHHHHHhcCCceEEEEECCC---cEEEEEcHHHHHHcCCc--cccCC
Confidence 4556778999999999999999 66 79999999999999999 99999
No 39
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=98.27 E-value=3.1e-07 Score=56.13 Aligned_cols=34 Identities=15% Similarity=0.425 Sum_probs=30.5
Q ss_pred CCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCC
Q psy17885 37 DSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSD 73 (95)
Q Consensus 37 ~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~ 73 (95)
++.+++.|+. +.|+|+|++|++++||+++|++|+
T Consensus 9 ~~~i~~~d~~---g~i~~~n~~~~~~~Gy~~~el~g~ 42 (117)
T 3f1p_A 9 KTFLSEHSMD---MKFTYCDDRITELIGYHPEELLGR 42 (117)
T ss_dssp GEEEEEECTT---CBEEEECTHHHHHHCCCHHHHTTS
T ss_pred ccEEEEECCC---ceEEEECcChhhhhCCCHHHHcCC
Confidence 4667777776 799999999999999999999999
No 40
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=98.25 E-value=1.4e-07 Score=57.02 Aligned_cols=41 Identities=22% Similarity=0.265 Sum_probs=37.7
Q ss_pred HHHhCCCCCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCC
Q psy17885 30 RQKNGHPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSD 73 (95)
Q Consensus 30 ~~~~~~~~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~ 73 (95)
+.+++..+++++++|.. +.|+++|++|++++||+.++++|+
T Consensus 2 ~~l~~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~g~ 42 (126)
T 3mjq_A 2 KNFLETIEDMILIINRE---GRLLYANTAVPKKLGYTHEELMSM 42 (126)
T ss_dssp CTTGGGCSSEEEEEETT---SBEEEECTHHHHHHSCCHHHHHHS
T ss_pred hhHHhhCCceEEEEeCC---CcEEEEcHHHHHHHCCCHHHHcCC
Confidence 34678899999999987 799999999999999999999999
No 41
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=98.25 E-value=1.3e-06 Score=52.72 Aligned_cols=50 Identities=20% Similarity=0.504 Sum_probs=41.3
Q ss_pred HHHhCCCCCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCCCCCCCccccc
Q psy17885 30 RQKNGHPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSDYDIPTYNLLV 83 (95)
Q Consensus 30 ~~~~~~~~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~~~~~~~~~L~ 83 (95)
+.+++..+++++++|...+++.|+|+|++|++++||+.++++|+ ++..+.
T Consensus 5 ~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~----~~~~~~ 54 (146)
T 2v0u_A 5 ATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGR----NCRFLQ 54 (146)
T ss_dssp CCTGGGSSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTS----CGGGGC
T ss_pred HHHHhcCCCcEEEEcCCCCCceEEEEcHHHHHHHCcCHHHHcCC----CHHHhc
Confidence 34678889999999984334899999999999999999999999 655443
No 42
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=98.25 E-value=6.4e-07 Score=57.23 Aligned_cols=46 Identities=13% Similarity=0.041 Sum_probs=41.0
Q ss_pred hhhHHHHHHHhCCCCCeEEEEe-cCCCCCcEEEEchHHHHhhCCCccccCCC
Q psy17885 23 RTYMYDERQKNGHPDSSFLLAN-AQIVDFPIVYCNESFCKISGYNRAEVPSD 73 (95)
Q Consensus 23 ~~~~~~~~~~~~~~~~gi~I~d-~~~~~~~I~yvN~aF~~mtGYs~~EliG~ 73 (95)
....+.++.+++.++.++++.| +. +.|+++|++|++++||+ +++|+
T Consensus 13 ~~~~~~~~~~~~~~~~~i~~~d~~~---~~i~~~N~~~~~~~g~~--~~~G~ 59 (158)
T 3k3c_A 13 VGAAEDVRRIFEHIPAILVGLEGPD---HRFVAVNAAYRGFSPLL--DTVGQ 59 (158)
T ss_dssp TCCHHHHHHHHHHCSSEEEEEETTT---TEEEEECHHHHHHCTTC--CSTTS
T ss_pred HHHHHHHHHHHhcCCceEEEEECCC---cEeHHHHHHHHHHcCCc--hhcCC
Confidence 3445678899999999999999 66 79999999999999999 99999
No 43
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=98.24 E-value=1.2e-06 Score=59.06 Aligned_cols=41 Identities=12% Similarity=0.033 Sum_probs=38.9
Q ss_pred HHHhCCCCCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCC
Q psy17885 30 RQKNGHPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSD 73 (95)
Q Consensus 30 ~~~~~~~~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~ 73 (95)
...++..+.|++++|.+ ++|+++|.++++++||+++|++|+
T Consensus 20 ~~~ld~l~~Gii~lD~~---g~I~~~N~~~e~~sG~~~~eviGk 60 (125)
T 1nwz_A 20 DGQLDGLAFGAIQLDGD---GNILQYNAAEGDITGRDPKQVIGK 60 (125)
T ss_dssp HHHHTTCSSEEEEEETT---CBEEEECHHHHHHHCCCHHHHTTS
T ss_pred HHHHhccCceEEEECCC---CEEEEEHHHHHHHhCCCHHHHcCC
Confidence 45799999999999988 799999999999999999999999
No 44
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=98.22 E-value=2.1e-06 Score=54.18 Aligned_cols=43 Identities=21% Similarity=0.164 Sum_probs=39.7
Q ss_pred HHHHHhCCCCCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCC
Q psy17885 28 DERQKNGHPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSD 73 (95)
Q Consensus 28 ~~~~~~~~~~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~ 73 (95)
.+..+++..+++++++|.. +.|+|+|++|++++||+.++++|+
T Consensus 41 ~~~~~l~~~~~~i~~~d~~---g~i~~~N~~~~~l~g~~~~~~~g~ 83 (167)
T 1v9y_A 41 IFFPALEQNMMGAVLINEN---DEVMFFNPAAEKLWGYKREEVIGN 83 (167)
T ss_dssp CHHHHHHTCSSEEEEECTT---SBEEEECHHHHHHHSCCGGGTTTS
T ss_pred HHHHHHHhCCCCEEEECCC---CcEEEECHHHHHHhCCCHHHHcCC
Confidence 4577899999999999977 799999999999999999999999
No 45
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=98.15 E-value=1.9e-06 Score=57.61 Aligned_cols=46 Identities=9% Similarity=0.046 Sum_probs=42.2
Q ss_pred hHHHHHHHhCCCCCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCC
Q psy17885 25 YMYDERQKNGHPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSD 73 (95)
Q Consensus 25 ~~~~~~~~~~~~~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~ 73 (95)
....+..++++.+++++++|.. +.|+++|+++++++|++.++++|+
T Consensus 78 ~~~~l~~il~~~~~gvi~~D~~---g~I~~~N~aa~~llg~~~~~~~g~ 123 (190)
T 2jhe_A 78 EHLALSALLEALPEPVLSVDMK---SKVDMANPASCQLFGQKLDRLRNH 123 (190)
T ss_dssp HHHHHHHHHHHCSSCEEEECTT---CBEEEECHHHHHHHTSCHHHHTTS
T ss_pred HHHHHHHHHHhCCCcEEEEcCC---CCEEEEcHHHHHHhCCCHHHhcCc
Confidence 4456788899999999999988 799999999999999999999999
No 46
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=98.15 E-value=1.6e-06 Score=51.22 Aligned_cols=46 Identities=13% Similarity=0.143 Sum_probs=41.3
Q ss_pred HHHHHHHhCCCCCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCC
Q psy17885 26 MYDERQKNGHPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSD 73 (95)
Q Consensus 26 ~~~~~~~~~~~~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~ 73 (95)
-..++.+++..++++++.|... +.|+|+|++|++++||+.++++|+
T Consensus 10 ~~~~~~~~~~~~~~i~~~d~~~--~~i~~~n~~~~~~~g~~~~~~~~~ 55 (125)
T 3eeh_A 10 ERRVRELTEATNDILWEFTADL--SEVLVINSAYEDIWGRSVAKLREN 55 (125)
T ss_dssp CHHHHHHHSCCCCEEEEEETTS--SCEEEECTHHHHHHSSCHHHHHHC
T ss_pred HHHHHHHHhcCCceEEEEEcCC--CcEEEecHHHHHHHCCCHHHHccC
Confidence 3467889999999999999873 489999999999999999999998
No 47
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=98.15 E-value=3.2e-06 Score=50.52 Aligned_cols=44 Identities=7% Similarity=-0.025 Sum_probs=32.0
Q ss_pred HHHHHHhCCCCCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCC
Q psy17885 27 YDERQKNGHPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSD 73 (95)
Q Consensus 27 ~~~~~~~~~~~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~ 73 (95)
..++.+++..+.++++.|.. +.++++|++|++++||+.++++|.
T Consensus 7 ~~l~~~~~~~~~~i~~~d~~---~~~~~~n~~~~~~~G~~~~~~~~~ 50 (125)
T 3nja_A 7 KLLHTAESDAGIGSWVLHME---SGRLEWSQAVHDIFGTDSATFDAT 50 (125)
T ss_dssp ----------CCEEEEEETT---TTEEEECHHHHHHHTCCTTTCCCB
T ss_pred HHHHHHHHhCCeeEEEEEcC---CCcEEECHHHHHHhCCCccccccc
Confidence 45678899999999999988 689999999999999999999994
No 48
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=98.13 E-value=1.6e-06 Score=58.91 Aligned_cols=40 Identities=13% Similarity=0.004 Sum_probs=37.8
Q ss_pred HHhCCCCCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCC
Q psy17885 31 QKNGHPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSD 73 (95)
Q Consensus 31 ~~~~~~~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~ 73 (95)
.+++..+.|++++|.. ++|+++|.++++++||+++|++|+
T Consensus 26 ~~ld~l~~GiivlD~d---g~I~~~N~~~e~isG~s~eeviGk 65 (129)
T 1mzu_A 26 AEFDALPVGAIQVDGS---GVIHRYNRTESRLSGRIPERVIGR 65 (129)
T ss_dssp TTGGGCSSEEEEEETT---CBEEEECHHHHHHHCCCHHHHTTS
T ss_pred HHHhccCceEEEECCC---CeEEEEHHHHHHHhCCCHHHHcCC
Confidence 3588899999999988 799999999999999999999999
No 49
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=98.08 E-value=1.5e-06 Score=62.91 Aligned_cols=42 Identities=10% Similarity=0.067 Sum_probs=38.8
Q ss_pred HHHHhCCCCCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCC
Q psy17885 29 ERQKNGHPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSD 73 (95)
Q Consensus 29 ~~~~~~~~~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~ 73 (95)
++.++++.+++++++|.. +.|+|+|++|++++||+++|++|+
T Consensus 10 ~~~i~~~~~~~i~~~d~~---g~i~~~N~a~~~l~G~~~~e~~G~ 51 (349)
T 3a0r_A 10 SESILESLETAIITLSKD---GRITEWNKKAEQLFGLKKENVLGR 51 (349)
T ss_dssp CCSSGGGSSSEEEEEESS---SBCSCBCHHHHHHHSCCSTTTTTC
T ss_pred HHHHHhhhcCeEEEECCC---CCEEeeHHHHHHHhCCCHHHHcCc
Confidence 345788999999999987 799999999999999999999999
No 50
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=97.93 E-value=2.1e-06 Score=51.29 Aligned_cols=44 Identities=0% Similarity=-0.174 Sum_probs=40.4
Q ss_pred HHHHHHhCCCCCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCC
Q psy17885 27 YDERQKNGHPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSD 73 (95)
Q Consensus 27 ~~~~~~~~~~~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~ 73 (95)
+.++.+++..++++++.|.. +.++|+|++|++++||+.+|+.|+
T Consensus 4 ~~~~~l~~~~~~~i~~~d~~---~~~~~~n~~~~~~~G~~~~~~~~~ 47 (118)
T 3icy_A 4 EELQALVDNIPAAIYHLDVS---GQATIRFRPPAFLKTLVSEHAGTT 47 (118)
T ss_dssp HHHHHHHTTCCCCCEEECTT---SCEEECCCCCGGGGGGEEEETTEE
T ss_pred HHHHHHHhcCCceEEEEEcC---CCceEEechhHhhcCCCHHHccCC
Confidence 46788999999999999987 689999999999999999999887
No 51
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=97.70 E-value=1.6e-05 Score=53.54 Aligned_cols=43 Identities=12% Similarity=-0.015 Sum_probs=39.6
Q ss_pred HHHHHHhCCCCCeEEEEecCCCCCcEEEEchH---HHHhhCCCccccCCC
Q psy17885 27 YDERQKNGHPDSSFLLANAQIVDFPIVYCNES---FCKISGYNRAEVPSD 73 (95)
Q Consensus 27 ~~~~~~~~~~~~gi~I~d~~~~~~~I~yvN~a---F~~mtGYs~~EliG~ 73 (95)
+.+..+++..+++++++|.. +.|+|+|++ +++++| ..++++|+
T Consensus 19 ~~l~~IL~~~~~gI~~vD~~---g~I~~~N~a~~~~~~i~g-~~~~~iGr 64 (151)
T 2qkp_A 19 EQANLILNHLPLEITFVNKD---DIFQYYNDSVPAAEMVFK-RTPSQVGR 64 (151)
T ss_dssp HHHHHHHHHSSSEEEEEETT---SBEEEECCCSCGGGCSSC-CCGGGTTS
T ss_pred HHHHHHHHhCCCceEEEcCC---CeEEEEeCCCchhhhhcC-CCHHHcCC
Confidence 45788999999999999999 799999999 999999 67899999
No 52
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=97.63 E-value=2.6e-05 Score=63.34 Aligned_cols=42 Identities=14% Similarity=0.106 Sum_probs=38.6
Q ss_pred HHHHhCCCCCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCC
Q psy17885 29 ERQKNGHPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSD 73 (95)
Q Consensus 29 ~~~~~~~~~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~ 73 (95)
..+.++...++++++|.. ++|+|+|++|++++||+.+|++|+
T Consensus 520 ~~~lle~a~~~i~~~D~~---grI~~~N~a~~~l~G~s~~e~~g~ 561 (635)
T 4eho_A 520 ASSQVHASMQPVLITDAE---GRILLMNDSFRDMLPAGSPSAVHL 561 (635)
T ss_dssp HHHHHHHCSSCCEEEETT---CCEEEECHHHHTTSCSSCCCCCSS
T ss_pred HHHHHHhCCCcEEEECCC---CeEeeHHHHHHHHHCcChHHHcCc
Confidence 456688889999999987 799999999999999999999999
No 53
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=97.62 E-value=6.6e-05 Score=45.46 Aligned_cols=36 Identities=14% Similarity=0.086 Sum_probs=30.6
Q ss_pred CCCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCC
Q psy17885 36 PDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSD 73 (95)
Q Consensus 36 ~~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~ 73 (95)
+++++|..|... +.++|+|++|++++||+.+|++|.
T Consensus 2 a~~giw~~d~~~--~~~~~~n~~~~~l~G~~~~e~~~~ 37 (115)
T 3h9w_A 2 TKAIPWKINWQT--MAFEYIGPQIEALLGWPQGSWKSV 37 (115)
T ss_dssp -CCEEEEEETTT--TEEEEECTHHHHHHCSCGGGCCBH
T ss_pred cceEEEEEEcCC--CcEEEEChhHHHHhCCChHHccCH
Confidence 467899999543 689999999999999999999884
No 54
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=97.60 E-value=2.5e-05 Score=58.96 Aligned_cols=49 Identities=16% Similarity=0.173 Sum_probs=39.0
Q ss_pred HHhCCCCCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCCCCCCCcccccCC
Q psy17885 31 QKNGHPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSDYDIPTYNLLVGS 85 (95)
Q Consensus 31 ~~~~~~~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~~~~~~~~~L~g~ 85 (95)
.++++.++.+++++++ +.|+|+|++|++++||+.+|++|++ -..|+++.
T Consensus 90 ~~l~a~~~~i~v~~~~---G~i~yvs~~~~~~lGy~~~el~g~~---~~~~ihp~ 138 (361)
T 4f3l_A 90 LMLEALDGFFLAIMTD---GSIIYVSESVTSLLEHLPSDLVDQS---IFNFIPEG 138 (361)
T ss_dssp HHHHHTTEEEEEEETT---SBEEEECTTHHHHHCCCHHHHTTSB---GGGGSCGG
T ss_pred HHHHhcCceEEEEcCC---ccEEEEechhhhhcCCCHHHhcCCc---HHHhcCHH
Confidence 3456667777888866 7999999999999999999999993 34555544
No 55
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=97.27 E-value=0.00021 Score=54.66 Aligned_cols=51 Identities=16% Similarity=0.204 Sum_probs=39.1
Q ss_pred HHhCCCCCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCCCCCCCcccccCCC
Q psy17885 31 QKNGHPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSDYDIPTYNLLVGSY 86 (95)
Q Consensus 31 ~~~~~~~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~~~~~~~~~L~g~~ 86 (95)
.++++..+-+++++... +.|+|+|+++++++||+.+|++|++ -..|++.++
T Consensus 90 ~ll~~~~gfi~v~~~~~--G~i~yvs~~~~~~lG~~~~el~g~~---~~~~ihp~D 140 (387)
T 4f3l_B 90 LILRAADGFLFVVGCDR--GKILFVSESVFKILNYSQNDLIGQS---LFDYLHPKD 140 (387)
T ss_dssp HHHHTCCSEEEEEETTT--CBEEEECTTHHHHHSCCHHHHTTSB---GGGGBCGGG
T ss_pred HHHhcCCCEEEEEecCC--eEEEEEchhhHHHcCCCHHHHCCCc---HHHhcCCCC
Confidence 35666666677777642 7999999999999999999999993 355665543
No 56
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=97.24 E-value=0.00015 Score=45.95 Aligned_cols=43 Identities=21% Similarity=0.293 Sum_probs=37.1
Q ss_pred HHHHHhCCCCCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCC
Q psy17885 28 DERQKNGHPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSD 73 (95)
Q Consensus 28 ~~~~~~~~~~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~ 73 (95)
.++.+++..+.++|..|.. ..++|+|++|++++||+.+++.+.
T Consensus 10 rl~~~~~~~~~g~w~~d~~---~~~~~~s~~~~~~~G~~~~~~~~~ 52 (142)
T 3mr0_A 10 RFQLAVSGASAGLWDWNPK---TGAMYLSPHFKKIMGYEDHELPDE 52 (142)
T ss_dssp CHHHHHHHTTCEEEEECTT---TCCEEECHHHHHHTTCCGGGSCSE
T ss_pred HHHHHHHhCCcEEEEEEcC---CCeEEECHHHHHHhCCCccccCCC
Confidence 4566778889999999987 578899999999999999998774
No 57
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=97.14 E-value=0.00017 Score=54.74 Aligned_cols=44 Identities=5% Similarity=-0.037 Sum_probs=40.2
Q ss_pred hHHHHHHHhCCCCCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCC
Q psy17885 25 YMYDERQKNGHPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSD 73 (95)
Q Consensus 25 ~~~~~~~~~~~~~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~ 73 (95)
....+..+++..+++++++|.. +.|+|+|++ ++++ ++.++++|+
T Consensus 237 ~~~~l~~IL~~l~dgIivvD~~---g~I~~~N~a-e~i~-~~~~e~iGr 280 (369)
T 3cax_A 237 NIEELKAIFEALPVDVTFIDKD---DRVRFFSPG-ERIF-TRTPSVLGR 280 (369)
T ss_dssp CHHHHHHHHHHSSSEEEEECTT---SBEEEECCS-SCSS-CCCGGGTTC
T ss_pred hHHHHHHHHHhCCCcEEEECCC---CcEEEEcCH-HHcc-CChHHHcCC
Confidence 3456788999999999999998 799999999 9999 999999999
No 58
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=96.70 E-value=0.0014 Score=49.78 Aligned_cols=44 Identities=18% Similarity=0.164 Sum_probs=32.5
Q ss_pred CeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCCCCCCCcccccCC
Q psy17885 38 SSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSDYDIPTYNLLVGS 85 (95)
Q Consensus 38 ~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~~~~~~~~~L~g~ 85 (95)
+||+++-.. +++.|+|+|+.|.++.||+.+|++|++ -..|++..
T Consensus 3 dgF~~vv~~-~~G~i~yvS~~~~~~LGy~~~el~G~s---~~d~ihp~ 46 (339)
T 3rty_A 3 DSFCCVISM-HDGIVLYTTPSITDVLGYPRDMWLGRS---FIDFVHLK 46 (339)
T ss_dssp SCEEEEEET-TTCBEEEECTTHHHHHCCCTTSSTTSB---GGGGBCHH
T ss_pred cEEEEEEEC-CCcEEEEEChHHHHHcCCCHHHHCCCc---HHHhcCHH
Confidence 555443331 238999999999999999999999994 45555543
No 59
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=96.53 E-value=0.0013 Score=50.10 Aligned_cols=36 Identities=8% Similarity=-0.004 Sum_probs=29.6
Q ss_pred CCCcEEEEchHHHHhhCCCccccCCCCCCCCcccccCCC
Q psy17885 48 VDFPIVYCNESFCKISGYNRAEVPSDYDIPTYNLLVGSY 86 (95)
Q Consensus 48 ~~~~I~yvN~aF~~mtGYs~~EliG~~~~~~~~~L~g~~ 86 (95)
.++.++|||+++.+++||+.+|++|++ -..|++.++
T Consensus 162 ~dG~~~yvn~~~~~lLGY~peELiG~s---~~~~vHPdD 197 (339)
T 3rty_A 162 ATGIISHVDSAAVSALGYLPQDLIGRS---IMDFYHHED 197 (339)
T ss_dssp TTCBEEEECTTHHHHHCCCHHHHTTSB---GGGGBCGGG
T ss_pred CCCeEEEcChhhhcccCCCHHHHcCCc---HHHEECHHH
Confidence 348999999999999999999999994 455655543
No 60
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=96.47 E-value=0.001 Score=50.72 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=28.3
Q ss_pred CCCcEEEEchHHHHhhCCCccccCCCCCCCCcccccC
Q psy17885 48 VDFPIVYCNESFCKISGYNRAEVPSDYDIPTYNLLVG 84 (95)
Q Consensus 48 ~~~~I~yvN~aF~~mtGYs~~EliG~~~~~~~~~L~g 84 (95)
.++.++|||+++++++||+.+|++|++ -+.++++
T Consensus 286 ~dg~~~~vn~~~~~ilGY~~eEl~g~~---~~~~iHp 319 (387)
T 4f3l_B 286 IDGKFVFVDQRATAILAYLPQELLGTS---CYEYFHQ 319 (387)
T ss_dssp TTSBEEEECTHHHHHHCCCHHHHTTSB---GGGTBCH
T ss_pred CCCEEEEECCCcccccCCCHHHHcCCc---HHHeeCH
Confidence 358999999999999999999999993 3455543
No 61
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=96.40 E-value=0.0013 Score=49.59 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=28.2
Q ss_pred CCCcEEEEchHHHHhhCCCccccCCCCCCCCcccccC
Q psy17885 48 VDFPIVYCNESFCKISGYNRAEVPSDYDIPTYNLLVG 84 (95)
Q Consensus 48 ~~~~I~yvN~aF~~mtGYs~~EliG~~~~~~~~~L~g 84 (95)
.++.++|||++|++++||+.+|++|++ -..|+++
T Consensus 259 ~dg~~~~vn~~~~~ilGY~~eEl~g~~---~~~~iHp 292 (361)
T 4f3l_A 259 LEWKFLFLDHRAPPIIGYLPFEVLGTS---GYDYYHV 292 (361)
T ss_dssp TTSBEEEECTTSHHHHCCCHHHHTTSB---GGGGBCH
T ss_pred CCceEEEECChhhhhhCcCHHHHcCCC---HHHeECH
Confidence 458999999999999999999999993 3445543
No 62
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=96.31 E-value=0.002 Score=48.63 Aligned_cols=38 Identities=11% Similarity=0.044 Sum_probs=31.7
Q ss_pred CCCCcEEEEchHHHHhhCCCccccCCCCCCCCcccccCCCC
Q psy17885 47 IVDFPIVYCNESFCKISGYNRAEVPSDYDIPTYNLLVGSYL 87 (95)
Q Consensus 47 ~~~~~I~yvN~aF~~mtGYs~~EliG~~~~~~~~~L~g~~~ 87 (95)
..++.++|||+++.+++||..+|++|++ -+.+++.++.
T Consensus 181 ~~dG~~~yvs~~~~~lLGY~peELig~s---~~~~vHPdD~ 218 (317)
T 4dj3_A 181 TPGCVFLEVDERAVPLLGYLPQDLIGTS---ILTYLHPEDR 218 (317)
T ss_dssp CTTSBEEEECTTHHHHHSCCHHHHTTSB---GGGGBCTTTT
T ss_pred cCCCeEEEEChHHhhhcCcChHHHcCCC---HHHeECHHHH
Confidence 3568999999999999999999999994 4667766553
No 63
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=96.29 E-value=0.0076 Score=45.48 Aligned_cols=47 Identities=19% Similarity=0.107 Sum_probs=35.8
Q ss_pred hCCCCCeEEEE-ecCCCCCcEEEEchHHHHhhCCCccccCCCCCCCCcccccC
Q psy17885 33 NGHPDSSFLLA-NAQIVDFPIVYCNESFCKISGYNRAEVPSDYDIPTYNLLVG 84 (95)
Q Consensus 33 ~~~~~~gi~I~-d~~~~~~~I~yvN~aF~~mtGYs~~EliG~~~~~~~~~L~g 84 (95)
+-..-+||+++ +.. ++.|+|+|+.+.++.||+.+|++|++ -+.|++.
T Consensus 31 lLqaldGF~~vvs~~--~G~i~yvS~sv~~~Lg~~~~~l~g~s---~~d~iHp 78 (320)
T 4dj2_A 31 TLRNQDTFSVAVSFL--TGRIVYISEQAGVLLRCKRDVFRGAR---FSELLAP 78 (320)
T ss_dssp TTSCSSEEEEEEETT--TCBEEEECTHHHHHHTSCSTTTTTSB---GGGGBCH
T ss_pred HHhccCCEEEEEECC--CceEEEECcHHHHHhCcCHHHHcCCc---HHHhcCH
Confidence 34456777654 433 38999999999999999999999994 4566554
No 64
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=95.99 E-value=0.0026 Score=48.06 Aligned_cols=38 Identities=11% Similarity=0.030 Sum_probs=31.0
Q ss_pred CCCCCcEEEEchHHHHhhCCCccccCCCCCCCCcccccCCC
Q psy17885 46 QIVDFPIVYCNESFCKISGYNRAEVPSDYDIPTYNLLVGSY 86 (95)
Q Consensus 46 ~~~~~~I~yvN~aF~~mtGYs~~EliG~~~~~~~~~L~g~~ 86 (95)
...++.++|||+++.+++||..+|++|++ -+.+++.++
T Consensus 182 h~~dG~~~yvd~~~~~lLGY~peELig~s---~~~~vHPdD 219 (320)
T 4dj2_A 182 HTPSCLFQDVDERAAPLLGYLPQDLLGAP---VLLFLHPED 219 (320)
T ss_dssp ECTTCBEEEECTTHHHHHSCCHHHHTTSB---GGGGBCGGG
T ss_pred ecCCceEEEcCcceeccCCcChHHHcCCc---HHHhCCHHH
Confidence 33568999999999999999999999994 456665543
No 65
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=95.98 E-value=0.0034 Score=47.15 Aligned_cols=47 Identities=11% Similarity=0.076 Sum_probs=29.1
Q ss_pred CCCeEE-EEecCCCCCcEEEEchHHHHhhCCCccccCCCCCCCCcccccCCCC
Q psy17885 36 PDSSFL-LANAQIVDFPIVYCNESFCKISGYNRAEVPSDYDIPTYNLLVGSYL 87 (95)
Q Consensus 36 ~~~gi~-I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~~~~~~~~~L~g~~~ 87 (95)
.-++|+ +++..+ +.|+|+++...++.||+.+|++|++ -+.+++..+.
T Consensus 23 a~dgF~~vvs~~~--G~i~yvS~s~~~~Lg~~~~el~g~s---~~d~iHp~D~ 70 (309)
T 3gdi_A 23 NADMFAVAVSLVS--GKILYISNQVASIFHCKKDAFSDAK---FVEFLAPHDV 70 (309)
T ss_dssp CTTEEEEEECTTT--CBEEEECTTTTTTC-------CCSB---GGGGBCTTTH
T ss_pred hcCCEEEEEECCC--ceEEEECCHHHHHcCCCHHHHcCCc---hhhccCHhHH
Confidence 346665 444432 7999999999999999999999994 4677776553
No 66
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=94.91 E-value=0.0013 Score=48.95 Aligned_cols=36 Identities=11% Similarity=0.171 Sum_probs=31.7
Q ss_pred CCCCCeEEEEecCCCCCcEEEEchHHHHhh---CCCccccCCC
Q psy17885 34 GHPDSSFLLANAQIVDFPIVYCNESFCKIS---GYNRAEVPSD 73 (95)
Q Consensus 34 ~~~~~gi~I~d~~~~~~~I~yvN~aF~~mt---GYs~~EliG~ 73 (95)
+..++|++++|.. +.|+|+|++++++. |+. ++++|+
T Consensus 177 ~~~~dGIivvD~~---G~Ii~~N~aA~~ll~~lG~~-~~~iGk 215 (305)
T 2ykf_A 177 PRAGDGFIRLDVD---GVVSYASPNALSAYHRMGLT-TELEGV 215 (305)
Confidence 3789999999988 79999999999997 455 789999
No 67
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=95.91 E-value=0.0023 Score=48.11 Aligned_cols=37 Identities=14% Similarity=0.027 Sum_probs=30.7
Q ss_pred CCCCcEEEEchHHHHhhCCCccccCCCCCCCCcccccCCC
Q psy17885 47 IVDFPIVYCNESFCKISGYNRAEVPSDYDIPTYNLLVGSY 86 (95)
Q Consensus 47 ~~~~~I~yvN~aF~~mtGYs~~EliG~~~~~~~~~L~g~~ 86 (95)
..++.++|||+++.+++||..+|++|++ -+.+++.++
T Consensus 172 ~~dG~~~yvd~~~~~lLGY~peELig~s---~~~~iHpdD 208 (309)
T 3gdi_A 172 TPNCLFQAVDERAVPLLGYLPQDLIETP---VLVQLHPSD 208 (309)
T ss_dssp CTTCBEEEECTTHHHHHSCCHHHHTTSB---HHHHBCTTS
T ss_pred cCCCeEEEECcccccccCcCHHHHcCCC---HHHhCCHHH
Confidence 3568999999999999999999999993 456666554
No 68
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=95.59 E-value=0.0064 Score=45.82 Aligned_cols=48 Identities=17% Similarity=0.024 Sum_probs=36.4
Q ss_pred CCCCCeEEE-EecCCCCCcEEEEchHHHHhhCCCccccCCCCCCCCcccccCCC
Q psy17885 34 GHPDSSFLL-ANAQIVDFPIVYCNESFCKISGYNRAEVPSDYDIPTYNLLVGSY 86 (95)
Q Consensus 34 ~~~~~gi~I-~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~~~~~~~~~L~g~~ 86 (95)
-..-+||++ ++.. ++.|+|+|+...++.||+.+|++|++ =+.|++..+
T Consensus 32 L~aldgF~~vvs~~--~G~i~yvS~~~~~~Lg~~~~el~g~s---~~d~ihp~D 80 (317)
T 4dj3_A 32 SKNTDTFAAVFSFL--SGRLVHISEQAALILNSKRGFLKSVH---FVDLLAPQD 80 (317)
T ss_dssp TSCTTEEEEEEETT--TCBEEEECTTHHHHTTCCHHHHHTSB---GGGGBCGGG
T ss_pred HhccCCEEEEEEcC--CcEEEEECCHHHHHcCCCHHHHcCCc---hhhhcChhh
Confidence 344566654 4443 38999999999999999999999993 466766554
No 69
>4ew7_A Conjugative transfer: regulation; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology; 1.67A {Salmonella enterica subsp}
Probab=93.40 E-value=0.25 Score=32.84 Aligned_cols=40 Identities=15% Similarity=0.252 Sum_probs=35.3
Q ss_pred hhhhhHHHHHHHhCCCCCeEEEEecCCCCCcEEEEchHHHHhh
Q psy17885 21 VRRTYMYDERQKNGHPDSSFLLANAQIVDFPIVYCNESFCKIS 63 (95)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~gi~I~d~~~~~~~I~yvN~aF~~mt 63 (95)
+=++++-.++.+...+|..+.+-+.. ..|+|+|-+|.+|.
T Consensus 14 SVnk~iL~iq~iY~nSPVpVCVRNq~---RkilYaN~aF~elF 53 (127)
T 4ew7_A 14 SVNKYILSIQDIYKNSPVPVCVRNQS---RKIIYANGAFIELF 53 (127)
T ss_dssp HHHHHHHHHHHHHTTCSSCEEEECTT---SCEEEECHHHHHHT
T ss_pred HHHHHHHhHHhhhcCCCccEEEeccc---ceEEEecchHHHHh
Confidence 34578888999999999999998887 69999999999993
No 70
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=90.50 E-value=0.29 Score=37.28 Aligned_cols=35 Identities=11% Similarity=0.148 Sum_probs=28.9
Q ss_pred CCeEEE-EecCCCCCcEEEEchHHHHhhCCCccccCCC
Q psy17885 37 DSSFLL-ANAQIVDFPIVYCNESFCKISGYNRAEVPSD 73 (95)
Q Consensus 37 ~~gi~I-~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~ 73 (95)
+-|+++ .+. .+++|+++|+.+++++|++.++++|+
T Consensus 41 p~G~Ll~~~~--~~~~i~~~S~N~~~~lg~~~~~llG~ 76 (337)
T 2ool_A 41 PHGYLFVVSE--TDLRIASVSANVEDLLRQPPASLLNV 76 (337)
T ss_dssp TTSEEEEECT--TTCBEEEEETTHHHHHSSCGGGGTTC
T ss_pred CCEEEEEEEC--CCCEEEEEehhHHHHHCcCHHHHcCC
Confidence 445554 443 35899999999999999999999999
No 71
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=62.62 E-value=4.9 Score=30.75 Aligned_cols=34 Identities=9% Similarity=0.116 Sum_probs=27.9
Q ss_pred CeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCC
Q psy17885 38 SSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSD 73 (95)
Q Consensus 38 ~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~ 73 (95)
...++++.. +..|++|++...++.|.+.++++|+
T Consensus 53 G~LL~l~~~--~~~I~~~S~N~~~~lg~~~~~llG~ 86 (343)
T 3s7o_A 53 GALLTADGH--SGEVLQMSLNAATFLGQEPTVLRGQ 86 (343)
T ss_dssp SEEEEEETT--TCBEEEEETTHHHHHSSCHHHHTTC
T ss_pred eEEEEEECC--CCEEEEEcccHHHHhCcChHHHcCC
Confidence 334455543 4899999999999999999999999
No 72
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=56.33 E-value=6.3 Score=29.90 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=28.2
Q ss_pred CCeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCC
Q psy17885 37 DSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSD 73 (95)
Q Consensus 37 ~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~ 73 (95)
+-|++++=. +++.|+++++...++.|-+.++++|+
T Consensus 28 phG~Ll~~~--~~~~I~~~S~N~~~~lg~~~~~~lG~ 62 (327)
T 4e04_A 28 PHGLLLALA--ADMTIVAGSDNLPELTGLAIGALIGR 62 (327)
T ss_dssp TTSEEEEEC--TTCBEEEEETTHHHHHSCCHHHHTTC
T ss_pred CCeEEEEEc--CCCeEEEEcccHHHHhCCChHhhcCC
Confidence 345444333 45899999999999999999999999
No 73
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=50.70 E-value=5 Score=28.27 Aligned_cols=33 Identities=6% Similarity=0.058 Sum_probs=27.4
Q ss_pred CCCeEEEEecCCCCCcEEEEchHHHHhhCCCcccc
Q psy17885 36 PDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEV 70 (95)
Q Consensus 36 ~~~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~El 70 (95)
.+..+.|.|-.. ....|++..|..++||+.+++
T Consensus 42 ~~~~~~l~D~~~--~~~~~~s~~~~~llG~~~~~~ 74 (258)
T 3clo_A 42 NGGCAVISDLSN--RKSYVTVHPWANFLGLTPEEA 74 (258)
T ss_dssp HSSEEEEEETTT--TEEEEEECTTCGGGCCCHHHH
T ss_pred cCCeEEEEEcCC--CeEEEEeCCHHHHhCCCcccc
Confidence 355688888664 688899999999999999877
No 74
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=48.54 E-value=11 Score=25.88 Aligned_cols=62 Identities=11% Similarity=-0.041 Sum_probs=20.0
Q ss_pred CCcCCccccee-ecccchhhhhhhhHHHHHHHhCCCCCeEEEEecCCCCCcEE-EEchHHHHhhCCCccccCCC
Q psy17885 2 NEMGNKRGWRK-NTAPEVELVRRTYMYDERQKNGHPDSSFLLANAQIVDFPIV-YCNESFCKISGYNRAEVPSD 73 (95)
Q Consensus 2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~gi~I~d~~~~~~~I~-yvN~aF~~mtGYs~~EliG~ 73 (95)
++.|+..|.++ ..++++....++.+..+.++... + +...+|. -.|+.|.+-.+|+-++++++
T Consensus 120 d~~G~~~g~v~~~~DITe~~~~e~ei~~l~~a~~~---g-------dl~~ri~~~~~~~~~~~l~~~ln~l~~~ 183 (233)
T 3vol_A 120 NDANERLGSAVQWTDRTEEHRAEQEVSQLVQAAAA---G-------DFSKRVEEAGKEGFFLRLAKDLNSLVDT 183 (233)
T ss_dssp CTTCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHC---C-----------------------------------
T ss_pred CCCCCEEEEEEEEehhhHHHHHHHHHHHHHHHHhC---C-------cccccccccccchHHHHHHHHHHHHHHH
Confidence 45677777777 77777665544444444444432 2 1124555 56788888888888888876
No 75
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=45.69 E-value=9.4 Score=30.63 Aligned_cols=34 Identities=12% Similarity=0.166 Sum_probs=27.9
Q ss_pred CeEEEEecCCCCCcEEEEchHHHHhhCCCccccCCC
Q psy17885 38 SSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSD 73 (95)
Q Consensus 38 ~gi~I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~ 73 (95)
...+.++.. +..|+++++...++.|.+.++++|+
T Consensus 30 G~LLal~~~--~~~I~~~S~N~~~~lg~~~~~llG~ 63 (520)
T 3zq5_A 30 GLVVVLQEP--DLTISQISANCTGILGRSPEDLLGR 63 (520)
T ss_dssp SEEEEEETT--TTEEEEEETTHHHHHSCCHHHHTTS
T ss_pred eEEEEEECC--CCEEEEEcccHHHHhCcChHHHcCC
Confidence 334455543 4899999999999999999999999
No 76
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=41.95 E-value=3 Score=27.97 Aligned_cols=39 Identities=10% Similarity=0.038 Sum_probs=29.3
Q ss_pred ecCCCCCcEEEEchHHHHhhCCCc--cccCCCCCCCCcccccCCC
Q psy17885 44 NAQIVDFPIVYCNESFCKISGYNR--AEVPSDYDIPTYNLLVGSY 86 (95)
Q Consensus 44 d~~~~~~~I~yvN~aF~~mtGYs~--~EliG~~~~~~~~~L~g~~ 86 (95)
...+.+++|+||+....+ .+|.. +||+|++ =+.|++..+
T Consensus 11 sRh~~dGKf~~vDq~~~r-~~~~~g~qdLlGrs---iy~f~H~~D 51 (132)
T 1oj5_A 11 TKQDTTGKIISIDTSSLR-AAGRTGWEDLVRKC---IYAFFQPQG 51 (132)
T ss_dssp EEECTTCCEEEEECHHHH-TTCCSCHHHHHHHH---HHHHTSCBT
T ss_pred EeecCCCcEEEEeccccc-ccccccHHHHHHHH---HHHHhCccc
Confidence 344567999999998874 78888 8999993 356666655
No 77
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=37.59 E-value=9.3 Score=17.64 Aligned_cols=9 Identities=56% Similarity=1.409 Sum_probs=7.2
Q ss_pred CcEEEEchH
Q psy17885 50 FPIVYCNES 58 (95)
Q Consensus 50 ~~I~yvN~a 58 (95)
-+|+|||..
T Consensus 6 vpiiycnrr 14 (21)
T 8tfv_A 6 VPIIYCNRR 14 (26)
T ss_dssp CCCEEEEGG
T ss_pred ccEEEEcCc
Confidence 489999964
No 78
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=33.65 E-value=50 Score=26.39 Aligned_cols=33 Identities=12% Similarity=0.135 Sum_probs=25.0
Q ss_pred CCeEE-EEecCCCCCcEEEEchHHHHhhCCCccccCCC
Q psy17885 37 DSSFL-LANAQIVDFPIVYCNESFCKISGYNRAEVPSD 73 (95)
Q Consensus 37 ~~gi~-I~d~~~~~~~I~yvN~aF~~mtGYs~~EliG~ 73 (95)
+-|++ ++|.. ++.|++|++...++.|+ ++++|+
T Consensus 33 p~G~Ll~~~~~--~~~i~~~S~N~~~~lg~--~~~lg~ 66 (635)
T 4eho_A 33 PHGALLVVSEP--DHRIIQASANAAEFLNL--GSVLGV 66 (635)
T ss_dssp TTEEEEEECTT--TCBEEEEETTHHHHHTC--SCCSSC
T ss_pred CCeEEEEEECC--CCeEEEEeCcHHhhhCc--HhhhCC
Confidence 34444 45543 48999999999999998 468998
No 79
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=25.81 E-value=20 Score=29.70 Aligned_cols=34 Identities=9% Similarity=0.026 Sum_probs=5.7
Q ss_pred CcEEEEchHHHHhhCCCccccCCCCCCCCcccccCCCC
Q psy17885 50 FPIVYCNESFCKISGYNRAEVPSDYDIPTYNLLVGSYL 87 (95)
Q Consensus 50 ~~I~yvN~aF~~mtGYs~~EliG~~~~~~~~~L~g~~~ 87 (95)
..-+.+|.+|.+.++|++++..|+ ++++|+++..
T Consensus 4 l~~i~a~~~~l~a~~~~~~~~~~~----~~~~~~~p~~ 37 (689)
T 3v5w_A 4 LEAVLADVSYLMAMEKSKATPAAR----ASKKILLPEP 37 (689)
T ss_dssp ------------------------------CCCCCCCT
T ss_pred cchhHhhHHHHHHhccCCCCcchh----hhhhhhCCCc
Confidence 456789999999999999999999 8888877653
No 80
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic helix-loop-helix motif, BHLH motif, lambd repressor-like DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus aurantiacus}
Probab=20.51 E-value=1.1e+02 Score=22.37 Aligned_cols=35 Identities=6% Similarity=-0.079 Sum_probs=29.5
Q ss_pred HHHHHHhCCCCCeEEEEecCCCCCcEEEEchHHHHhhC
Q psy17885 27 YDERQKNGHPDSSFLLANAQIVDFPIVYCNESFCKISG 64 (95)
Q Consensus 27 ~~~~~~~~~~~~gi~I~d~~~~~~~I~yvN~aF~~mtG 64 (95)
..+.++++..+...+|.|.. ..|+-+|+++..+.+
T Consensus 99 p~l~~lLd~l~~PA~V~d~~---~dvla~N~~a~~L~~ 133 (292)
T 3pxp_A 99 QYLIDMIRNMNVPAFVTDQY---VNIIAANMITIRFFN 133 (292)
T ss_dssp HHHHHHHHTCSSCEEEEETT---CBEEEEEHHHHHHHT
T ss_pred HHHHHHHHhcCCCeEEECCC---CCHhhcCHHHHHHhC
Confidence 45677777777789999998 799999999999985
Done!