RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17885
         (95 letters)



>d1bywa_ d.110.3.6 (A:) Erg potassium channel, N-terminal domain
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 110

 Score = 48.5 bits (114), Expect = 2e-09
 Identities = 15/33 (45%), Positives = 26/33 (78%)

Query: 39 SFLLANAQIVDFPIVYCNESFCKISGYNRAEVP 71
           F++ANA++ +  ++YCN+ FC++ GY+RAEV 
Sbjct: 3  KFIIANARVENCAVIYCNDGFCELCGYSRAEVM 35


>d1n9la_ d.110.3.6 (A:) Putative blue light receptor, phot-lov1
          domain {Green algae (Chlamydomonas reinhardtii) [TaxId:
          3055]}
          Length = 109

 Score = 46.0 bits (108), Expect = 1e-08
 Identities = 13/32 (40%), Positives = 22/32 (68%)

Query: 39 SFLLANAQIVDFPIVYCNESFCKISGYNRAEV 70
          +F++A+A + D P+VY +E F  ++GY   EV
Sbjct: 5  TFVVADATLPDCPLVYASEGFYAMTGYGPDEV 36


>d1jnua_ d.110.3.6 (A:) Photoreceptor phy3 flavin-binding domain,
          lov2 {Maidenhair fern (Adiantum capillus-veneris)
          [TaxId: 13818]}
          Length = 104

 Score = 44.5 bits (104), Expect = 5e-08
 Identities = 10/33 (30%), Positives = 22/33 (66%)

Query: 39 SFLLANAQIVDFPIVYCNESFCKISGYNRAEVP 71
          SF++ + ++ D PI++ ++ F +++ Y R EV 
Sbjct: 2  SFVITDPRLPDNPIIFASDRFLELTEYTREEVL 34


>d1p97a_ d.110.3.7 (A:) Hypoxia-inducible factor Hif2a, C-terminal
          domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 114

 Score = 25.0 bits (53), Expect = 1.3
 Identities = 5/17 (29%), Positives = 9/17 (52%)

Query: 49 DFPIVYCNESFCKISGY 65
          D    YC++   ++ GY
Sbjct: 15 DMKFTYCDDRITELIGY 31


>d1ll8a_ d.110.3.5 (A:) N-terminal PAS domain of Pas kinase {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 114

 Score = 24.3 bits (52), Expect = 2.4
 Identities = 5/18 (27%), Positives = 10/18 (55%)

Query: 52 IVYCNESFCKISGYNRAE 69
          I+  N+  C + GY+  +
Sbjct: 21 ILVANDKACGLLGYSSQD 38


>d1xj3a1 d.110.3.2 (A:154-259) Histidine kinase FixL heme domain
          {Bradyrhizobium japonicum [TaxId: 375]}
          Length = 106

 Score = 23.5 bits (49), Expect = 4.7
 Identities = 3/18 (16%), Positives = 9/18 (50%)

Query: 52 IVYCNESFCKISGYNRAE 69
          I   + +  ++ G++  E
Sbjct: 12 IQLFSTAAERLFGWSELE 29


>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia
          coli [TaxId: 562]}
          Length = 265

 Score = 23.6 bits (50), Expect = 5.2
 Identities = 7/62 (11%), Positives = 14/62 (22%)

Query: 19 ELVRRTYMYDERQKNGHPDSSFLLANAQIVDFPIVYCNESFCKISGYNRAEVPSDYDIPT 78
                Y    R   G   +     +   +   +  C  +   I         ++   P 
Sbjct: 21 PAKTARYRKGFRSGQGDALAVVFPGSLLELWRVLKACVTADKIILMQAANTGLTEGSTPN 80

Query: 79 YN 80
           N
Sbjct: 81 GN 82


>d1ux6a1 b.29.1.16 (A:937-1152) Thrombospondin C-terminal domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 216

 Score = 23.3 bits (50), Expect = 6.3
 Identities = 6/20 (30%), Positives = 7/20 (35%)

Query: 5   GNKRGWRKNTAPEVELVRRT 24
               GW+  TA    L  R 
Sbjct: 143 PRHIGWKDFTAYRWRLSHRP 162


>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing
          enzyme {Neurospora crassa [TaxId: 5141]}
          Length = 365

 Score = 23.3 bits (49), Expect = 7.9
 Identities = 3/10 (30%), Positives = 9/10 (90%)

Query: 77 PTYNLLVGSY 86
          P ++L++G++
Sbjct: 1  PLHHLMIGTW 10


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.137    0.420 

Gapped
Lambda     K      H
   0.267   0.0618    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 365,573
Number of extensions: 14241
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 13
Length of query: 95
Length of database: 2,407,596
Length adjustment: 58
Effective length of query: 37
Effective length of database: 1,611,256
Effective search space: 59616472
Effective search space used: 59616472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.1 bits)