Query psy17886
Match_columns 198
No_of_seqs 136 out of 1123
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 16:40:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17886.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17886hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1orq_C Potassium channel; volt 99.3 1.3E-12 4.6E-17 102.3 7.2 141 41-196 9-154 (223)
2 2r9r_B Paddle chimera voltage 98.9 3.6E-09 1.2E-13 92.5 7.5 150 33-195 174-363 (514)
3 3beh_A MLL3241 protein; transm 98.3 9.9E-08 3.4E-12 79.4 1.6 145 32-196 3-150 (355)
4 2kyh_A KVAP, voltage-gated pot 98.3 2.8E-07 9.6E-12 67.6 3.6 106 41-164 22-127 (147)
5 1ors_C Potassium channel; volt 98.3 3.1E-07 1.1E-11 66.1 3.6 106 40-163 6-111 (132)
6 3rvy_A ION transport protein; 97.6 5.7E-05 2E-09 60.8 5.3 77 40-131 30-107 (285)
7 4dxw_A Navrh, ION transport pr 97.5 0.00056 1.9E-08 53.1 8.8 76 40-129 12-88 (229)
8 2a9h_A Voltage-gated potassium 88.9 0.42 1.5E-05 34.7 4.0 12 118-129 15-26 (155)
9 2ih3_C Voltage-gated potassium 64.2 6.8 0.00023 26.8 3.6 12 147-158 5-16 (122)
10 1orq_C Potassium channel; volt 34.0 60 0.0021 24.0 4.9 13 145-157 101-113 (223)
11 2v2f_A Penicillin binding prot 22.9 41 0.0014 15.9 1.4 14 93-106 6-19 (26)
No 1
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.35 E-value=1.3e-12 Score=102.33 Aligned_cols=141 Identities=16% Similarity=0.214 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHhhhheeeeeecCCCCchhhHhHHHHHHHHHHHHHHHhheeEEEcCCcEEEecHHHHHHHHhhhhhh
Q psy17886 41 IWDWVILCLTFYTAIMVPYNVAFKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFV 120 (198)
Q Consensus 41 ~Wd~i~~~~~~~~~~~iP~~~~F~~~~~~~~~~~~~~~i~~~if~iDi~l~f~t~~~~~~g~~i~~~~~I~~~Ylk~~f~ 120 (198)
.||.++.++++++....+.+...+.+.+....+..+|.+++++|.+|+++|+.++. + .++|+|+ ++
T Consensus 9 ~f~~~i~~lil~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~~---~----------~~~y~~~-~i 74 (223)
T 1orq_C 9 LVELGVSYAALLSVIVVVVECTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKSG---D----------PAGYVKK-TL 74 (223)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHTTS---C----------HHHHHHH-HH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHHHHHHcccc---c----------HHHHHHH-hH
Confidence 48999999999999988876544443333446788999999999999999999861 1 2789988 89
Q ss_pred hhhhhhccHHHHhcccCCCcchhhHHHHHHHHHHHHHHHHHH---HHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17886 121 IDLLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGRVVR---KLDRYLE--YGAAMLILLLCFYMLVAHWLACIWYS 195 (198)
Q Consensus 121 ~Dli~~iP~~~~~~~~~~~~~~~~~~~ll~l~rl~r~~~l~~---~l~~~~~--~~~~~l~~ll~~~~l~~H~~aClw~~ 195 (198)
+|+++++|+........+. +....++.+|++|++|+.|+.+ +..+... .....+..++...+...|+.||++|.
T Consensus 75 iDllailP~~~~~~~~~~~-~~~~~lr~lRllRllR~~r~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 153 (223)
T 1orq_C 75 YEIPALVPAGLLALIEGHL-AGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKIRFYHLFGAVMLTVLYGAFAIYI 153 (223)
T ss_dssp HHCTTHHHHHHHHHHHHHH-HTTTCHHHHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998764310000 0012244445555555544433 1111111 11123445566677789999999987
Q ss_pred h
Q psy17886 196 I 196 (198)
Q Consensus 196 i 196 (198)
+
T Consensus 154 ~ 154 (223)
T 1orq_C 154 V 154 (223)
T ss_dssp T
T ss_pred H
Confidence 5
No 2
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=98.87 E-value=3.6e-09 Score=92.54 Aligned_cols=150 Identities=15% Similarity=0.287 Sum_probs=92.7
Q ss_pred ecC-ChHHHHHHHHHHHHHHHHHhhhheeee--eecC------------------------CCCchhhHhHHHHHHHHHH
Q psy17886 33 LHY-CAFKAIWDWVILCLTFYTAIMVPYNVA--FKNK------------------------TSEDVSLLVVDSIVDVIFF 85 (198)
Q Consensus 33 ~P~-s~~~~~Wd~i~~~~~~~~~~~iP~~~~--F~~~------------------------~~~~~~~~~~~~i~~~if~ 85 (198)
+|+ |...+.++.+++++++.+.+...++.. +..+ ......+..++.++.++|.
T Consensus 174 ~p~sS~~a~~f~~~~i~~Illsii~~~leT~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~i~~~iFt 253 (514)
T 2r9r_B 174 YPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDPFFIVETLCIIWFS 253 (514)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCCCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccchhhhHHHHHHHHHHHHHH
Confidence 464 677889999999999999888776542 1111 0012356789999999999
Q ss_pred HHHHHhheeEEEcCCcEEEecHHHHHHHHhhh-hhhhhhhhhccHHHHhcccCCC-c-----chhhHHHHHHHHHHHHHH
Q psy17886 86 IDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKS-WFVIDLLSCLPYDVFNAFDHDE-D-----GIGSLFSALKVVRLLRLG 158 (198)
Q Consensus 86 iDi~l~f~t~~~~~~g~~i~~~~~I~~~Ylk~-~f~~Dli~~iP~~~~~~~~~~~-~-----~~~~~~~ll~l~rl~r~~ 158 (198)
+|+++++.++- + .++|+++ |.++|+++++|..+........ . .....++++|++|++|+.
T Consensus 254 iE~ilR~~~~~---~----------k~~Y~ks~wniiDli~iip~~i~l~~~~~~~~~~~~~~~~~~lrvlRllRvlRil 320 (514)
T 2r9r_B 254 FEFLVRFFACP---S----------KAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRIMRILRIF 320 (514)
T ss_dssp HHHHHHHHHSS---C----------SSSSTTSHHHHHHHHTTHHHHHHHHHHHTSCSHHHHHTTHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHhCC---c----------HHHHHhchhHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHH
Confidence 99999998741 1 1479998 6899999999987754432110 0 112345566666666665
Q ss_pred HHHHHHHH------HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17886 159 RVVRKLDR------YLEYGAAMLILLLCFYMLVAHWLACIWYS 195 (198)
Q Consensus 159 ~l~~~l~~------~~~~~~~~l~~ll~~~~l~~H~~aClw~~ 195 (198)
|+.+.... .+..+.-.+..+++.+++..+++||+.|.
T Consensus 321 kL~r~~~~l~~l~~tl~~s~~~l~~ll~~l~i~~~if~~~~~~ 363 (514)
T 2r9r_B 321 KLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYF 363 (514)
T ss_dssp GGGGSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhe
Confidence 55443222 11112222333344445556777776664
No 3
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=98.35 E-value=9.9e-08 Score=79.36 Aligned_cols=145 Identities=17% Similarity=0.183 Sum_probs=77.2
Q ss_pred EecCChHHHHHHHHHHHHHHHHHhhhheeeeeecCCCC-chhhHhHHHHHHHHHHHHHHHhheeEEEcCCcEEEecHHHH
Q psy17886 32 LLHYCAFKAIWDWVILCLTFYTAIMVPYNVAFKNKTSE-DVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVI 110 (198)
Q Consensus 32 i~P~s~~~~~Wd~i~~~~~~~~~~~iP~~~~F~~~~~~-~~~~~~~~~i~~~if~iDi~l~f~t~~~~~~g~~i~~~~~I 110 (198)
..|+|+. .+.+++++++.+.+.+..+. .+..... ......++.++-++|.+|+++++... .+ .
T Consensus 3 ~~p~s~~---f~~~~~~~i~ls~~~~~~~t-~~~~~~~~~~~~~~~~~~~~~~f~~e~~~r~~~~-~~--~--------- 66 (355)
T 3beh_A 3 VLPFLRI---YAPLNAVLAAPGLLAVAALT-IPDMSGRSRLALAALLAVIWGAYLLQLAATLLKR-RA--G--------- 66 (355)
T ss_dssp ----CCS---SSSHHHHHHHHHHHHHHHHT-SSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CS--C---------
T ss_pred CCchhHH---HHHHHHHHHHHHHHHHHHHc-ccchhhhHHHHHHHHHhHHHHHHHHHHHHhcccc-cc--c---------
Confidence 3577764 36666666677766666552 2221111 11123344444456899999988532 11 1
Q ss_pred HHHHhh-hhhhhhhhhh-ccHHHHhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy17886 111 RMNYLK-SWFVIDLLSC-LPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFYMLVAHW 188 (198)
Q Consensus 111 ~~~Ylk-~~f~~Dli~~-iP~~~~~~~~~~~~~~~~~~~ll~l~rl~r~~~l~~~l~~~~~~~~~~l~~ll~~~~l~~H~ 188 (198)
..|.+ .+.++|++++ +|+....... ....+.++++|++|+.|..+-.+.+.+....+.-.+...+..++++.|+
T Consensus 67 -~~~~~~~~~i~Dl~~i~~p~~~~~~~~---~~~~r~lr~~R~lrl~r~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~ 142 (355)
T 3beh_A 67 -VVRDRTPKIAIDVLAVLVPLAAFLLDG---SPDWSLYCAVWLLKPLRDSTFFPVLGRVLANEARNLIGVTTLFGVVLFA 142 (355)
T ss_dssp -SSCCCHHHHHHHHHHHHHHHHHHHSCC---SGGGGGGGGGGGSHHHHTCSSHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred -ceeccCcchHHHHHHHHHHHHHHHhcc---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12333 4689999998 6987654321 1222333444444444443334444444433333445556666778999
Q ss_pred HHHHHHHh
Q psy17886 189 LACIWYSI 196 (198)
Q Consensus 189 ~aClw~~i 196 (198)
.||++|.+
T Consensus 143 ~a~~~~~~ 150 (355)
T 3beh_A 143 VALAAYVI 150 (355)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999875
No 4
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=98.33 E-value=2.8e-07 Score=67.56 Aligned_cols=106 Identities=18% Similarity=0.281 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHhhhheeeeeecCCCCchhhHhHHHHHHHHHHHHHHHhheeEEEcCCcEEEecHHHHHHHHhhhhhh
Q psy17886 41 IWDWVILCLTFYTAIMVPYNVAFKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFV 120 (198)
Q Consensus 41 ~Wd~i~~~~~~~~~~~iP~~~~F~~~~~~~~~~~~~~~i~~~if~iDi~l~f~t~~~~~~g~~i~~~~~I~~~Ylk~~f~ 120 (198)
.||..+.++++.+...+-++...+.+.+.......+|.++.++|.+|.++++..+ ++ .++|.++ -+
T Consensus 22 ~f~~~i~~lil~sv~~v~~et~~~i~~~~~~~~~~id~~~~~iF~~Ey~lRl~~a---~~----------k~~f~~~-~i 87 (147)
T 2kyh_A 22 LVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKS---GD----------PAGYVKK-TL 87 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TC----------HHHHHHH-ST
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHC---Cc----------HHHHHHH-HH
Confidence 4788888888888777776665544332233467789999999999999999875 21 2568887 68
Q ss_pred hhhhhhccHHHHhcccCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q psy17886 121 IDLLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGRVVRKL 164 (198)
Q Consensus 121 ~Dli~~iP~~~~~~~~~~~~~~~~~~~ll~l~rl~r~~~l~~~l 164 (198)
+|++|++|+....... +..+..+++|++|++|+.|+.+..
T Consensus 88 iDllailP~~~~~~~~----~~lr~lRvlRllRv~Rllrl~r~~ 127 (147)
T 2kyh_A 88 YEIPALVPAGLLALIE----GHLAGLGLFRLVRLLRFLRILLII 127 (147)
T ss_dssp TTHHHHCCHHHHHHHH----HHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999988654321 112334444444444444444433
No 5
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=98.33 E-value=3.1e-07 Score=66.09 Aligned_cols=106 Identities=18% Similarity=0.255 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHhhhheeeeeecCCCCchhhHhHHHHHHHHHHHHHHHhheeEEEcCCcEEEecHHHHHHHHhhhhh
Q psy17886 40 AIWDWVILCLTFYTAIMVPYNVAFKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWF 119 (198)
Q Consensus 40 ~~Wd~i~~~~~~~~~~~iP~~~~F~~~~~~~~~~~~~~~i~~~if~iDi~l~f~t~~~~~~g~~i~~~~~I~~~Ylk~~f 119 (198)
+.+|.+++.+++.+....-.+..-+.+.+....+..+|.++.++|.+|+++++..+ ++ .++|.+ +-
T Consensus 6 ~~f~~~i~~lIlls~~~~~~et~~~~~~~~~~~l~~~d~~~~~iFt~E~~lRl~~~---~~----------~~~y~~-~n 71 (132)
T 1ors_C 6 PLVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKS---GD----------PAGYVK-KT 71 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TS----------TTTTTT-TC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC----------HHHHHH-HH
Confidence 45788888888888777666543222222223466789999999999999999864 11 156888 88
Q ss_pred hhhhhhhccHHHHhcccCCCcchhhHHHHHHHHHHHHHHHHHHH
Q psy17886 120 VIDLLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGRVVRK 163 (198)
Q Consensus 120 ~~Dli~~iP~~~~~~~~~~~~~~~~~~~ll~l~rl~r~~~l~~~ 163 (198)
++|+++++|....... + +....++.+|++|++|+.|+.+.
T Consensus 72 iiDllailp~~~~~~~-~---~~l~~lr~lRllRv~Rvlkl~r~ 111 (132)
T 1ors_C 72 LYEIPALVPAGLLALI-E---GHLAGLGLFRLVRLLRFLRILLI 111 (132)
T ss_dssp GGGTGGGSCHHHHHHH-H---HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-c---chHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999998765433 1 11223334444444444444433
No 6
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=97.64 E-value=5.7e-05 Score=60.76 Aligned_cols=77 Identities=21% Similarity=0.301 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHhhhheeeeeecCCCCchhhHhHHHHHHHHHHHHHHHhheeEEEcCCcEEEecHHHHHHHHhhh-h
Q psy17886 40 AIWDWVILCLTFYTAIMVPYNVAFKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKS-W 118 (198)
Q Consensus 40 ~~Wd~i~~~~~~~~~~~iP~~~~F~~~~~~~~~~~~~~~i~~~if~iDi~l~f~t~~~~~~g~~i~~~~~I~~~Ylk~-~ 118 (198)
..+|.++.++++.+.....++..-+...........+|.++-++|.+|+++++.. .| ++|.++ |
T Consensus 30 ~~f~~~i~~li~l~~i~~~~~~~~~~~~~~~~~l~~~e~~~~~iF~~E~~lrl~~-----~~----------~~y~~~~w 94 (285)
T 3rvy_A 30 SFFTKFIIYLIVLNGITMGLETSKTFMQSFGVYTTLFNQIVITIFTIEIILRIYV-----HR----------ISFFKDPW 94 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCTTHHHHSHHHHHHHHHHHHHHHHHHHHHHHHT-----TG----------GGGGGCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-----Hh----------HHHHcCCh
Confidence 3567778888888877765543211111122346778999999999999999975 34 568887 5
Q ss_pred hhhhhhhhccHHH
Q psy17886 119 FVIDLLSCLPYDV 131 (198)
Q Consensus 119 f~~Dli~~iP~~~ 131 (198)
-++|+++++|...
T Consensus 95 n~~Dl~~v~~~~i 107 (285)
T 3rvy_A 95 SLFDFFVVAISLV 107 (285)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHhHHHHHHHHHH
Confidence 8899998887654
No 7
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=97.47 E-value=0.00056 Score=53.10 Aligned_cols=76 Identities=14% Similarity=0.373 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHhhhheeeeeecCCCCchhhHhHHHHHHHHHHHHHHHhheeEEEcCCcEEEecHHHHHHHHhhh-h
Q psy17886 40 AIWDWVILCLTFYTAIMVPYNVAFKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKS-W 118 (198)
Q Consensus 40 ~~Wd~i~~~~~~~~~~~iP~~~~F~~~~~~~~~~~~~~~i~~~if~iDi~l~f~t~~~~~~g~~i~~~~~I~~~Ylk~-~ 118 (198)
+.+|.++.++++.+......+. .+.+++.......+|.++-++|.+|+++|.-.. | -.++|.++ |
T Consensus 12 ~~f~~~i~~~I~ln~i~l~~~~-~~~~~~~~~~l~~~e~~~~~iF~~E~~lri~~~-----~--------~~~~y~~~~w 77 (229)
T 4dxw_A 12 RIFQFTVVSIIILNAVLIGATT-YELDPLFLETIHLLDYGITIFFVIEILIRFIGE-----K--------QKADFFKSGW 77 (229)
T ss_dssp HHHHHHHHHHHHHHHHSTTTCC-SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------------CHH
T ss_pred chHHHHHHHHHHHHHHHHHHcc-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----C--------chhHHhcCCc
Confidence 4678888888998888876654 222211123456789999999999999998752 1 12568886 5
Q ss_pred hhhhhhhhccH
Q psy17886 119 FVIDLLSCLPY 129 (198)
Q Consensus 119 f~~Dli~~iP~ 129 (198)
-.+|+++++|.
T Consensus 78 ni~D~~~v~~~ 88 (229)
T 4dxw_A 78 NIFDTVIVAIS 88 (229)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 78998776653
No 8
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=88.85 E-value=0.42 Score=34.66 Aligned_cols=12 Identities=17% Similarity=-0.092 Sum_probs=0.0
Q ss_pred hhhhhhhhhccH
Q psy17886 118 WFVIDLLSCLPY 129 (198)
Q Consensus 118 ~f~~Dli~~iP~ 129 (198)
+-+.|+++++|.
T Consensus 15 ~~~~dli~~lp~ 26 (155)
T 2a9h_A 15 EGRGRLIKHMPP 26 (155)
T ss_dssp ------------
T ss_pred hhHHHHHHHHHH
Confidence 467899999885
No 9
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=64.22 E-value=6.8 Score=26.76 Aligned_cols=12 Identities=25% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH
Q psy17886 147 SALKVVRLLRLG 158 (198)
Q Consensus 147 ~ll~l~rl~r~~ 158 (198)
+.+|++|++|+.
T Consensus 5 r~lRl~Ri~ri~ 16 (122)
T 2ih3_C 5 LSGLLARLVKLL 16 (122)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 10
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=34.01 E-value=60 Score=23.96 Aligned_cols=13 Identities=31% Similarity=0.600 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q psy17886 145 LFSALKVVRLLRL 157 (198)
Q Consensus 145 ~~~ll~l~rl~r~ 157 (198)
.+|++|++|++|+
T Consensus 101 ~lRllRllR~~r~ 113 (223)
T 1orq_C 101 LVRLLRFLRILLI 113 (223)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 11
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=22.88 E-value=41 Score=15.92 Aligned_cols=14 Identities=7% Similarity=0.292 Sum_probs=10.3
Q ss_pred eeEEEcCCcEEEec
Q psy17886 93 HTTFVGPGGEVVSD 106 (198)
Q Consensus 93 ~t~~~~~~g~~i~~ 106 (198)
.+-.||++|+++.+
T Consensus 6 ss~IYD~~g~~i~~ 19 (26)
T 2v2f_A 6 SSKIYDNKNQLIAD 19 (26)
T ss_pred CCEEEeCCCCEeee
Confidence 35678888988765
Done!