RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17886
(198 letters)
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor,
voltage dependent, ION CH shaker, membrane protein,
eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB:
3lnm_B* 3lut_B* 2a79_B*
Length = 514
Score = 43.1 bits (101), Expect = 2e-05
Identities = 19/99 (19%), Positives = 40/99 (40%), Gaps = 13/99 (13%)
Query: 111 RMNYLKSWF-VIDLLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGRVVR--KLDRY 167
+ + + +ID+++ +PY V + + +VV++ R+ R++R KL R+
Sbjct: 266 KAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRIMRILRIFKLSRH 325
Query: 168 ----------LEYGAAMLILLLCFYMLVAHWLACIWYSI 196
L+ L LL+ F + + Y
Sbjct: 326 SKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFA 364
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 2e-05
Identities = 33/187 (17%), Positives = 59/187 (31%), Gaps = 65/187 (34%)
Query: 37 AFKAIWD----WVILCLTFYTAIMVPYN-----VAFKNKTS----EDVSLLVVDSIVDVI 83
A + +W+ F +V N + F + E+ S ++ ++IVD
Sbjct: 1641 AAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGK 1700
Query: 84 FFIDIV---LNFHT---TFVGPGGE------------VVSDPKVIRMNYLKSWFVIDLLS 125
+ + +N H+ TF G ++ LKS +I
Sbjct: 1701 LKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLME---KAAFEDLKSKGLI---- 1753
Query: 126 CLPYDVFNAFDHDEDGIG-SL--FSAL----------KVVRLLRL-GRVVRKLDRYLEYG 171
P D A G SL ++AL +V ++ G ++ E G
Sbjct: 1754 --PADATFA--------GHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELG 1803
Query: 172 A---AML 175
M+
Sbjct: 1804 RSNYGMI 1810
Score = 31.9 bits (72), Expect = 0.15
Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 24/103 (23%)
Query: 20 YRQEAPK---------TPPH-ILLHYCAFKAIWDWVILCLTFYTA-IMVPYNVAFKNKTS 68
+ + K +P H LL + D V ++F I +P V +
Sbjct: 409 FSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP--V-YDTFDG 465
Query: 69 EDVSLL---VVDSIVDVIFFI----DIVLNFHTTFV---GPGG 101
D+ +L + + IVD I + + F T + GPGG
Sbjct: 466 SDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGG 508
Score = 26.2 bits (57), Expect = 9.3
Identities = 18/168 (10%), Positives = 48/168 (28%), Gaps = 54/168 (32%)
Query: 2 SHSHWF---QM-----MSLSADVMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYT 53
+ +F Q+ L + P TP ++ + +
Sbjct: 23 PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY--------------- 67
Query: 54 AIMVPYNVAFKNKTSEDVSLLVVDSIVDVIFFIDIVLN-FHTTFVGPGGEV--------V 104
V+ + S+ V +++ L F ++ G ++
Sbjct: 68 -------VSSLVEPSKVGQFDQV---------LNLCLTEFENCYLE-GNDIHALAAKLLQ 110
Query: 105 SDPKVI--RMNYLKSWFVIDLLSCLPYDVFNA---FDHDEDGIGSLFS 147
+ + +K++ +++ P+D + F +G L +
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA 158
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB
complex, membrane protein; 1.90A {Aeropyrum pernix}
SCOP: f.14.1.1
Length = 132
Score = 38.0 bits (88), Expect = 4e-04
Identities = 21/130 (16%), Positives = 45/130 (34%), Gaps = 18/130 (13%)
Query: 38 FKAIWDWVILCLTFYTAIMVPYNVAFKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFV 97
+ + + + I+V + V L +VD I+ +I + D
Sbjct: 4 EHPLVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRA----- 58
Query: 98 GPGGEVVSDPKVIRMNYLKSWFVIDLLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRL 157
S Y+K + ++ + +P + + G + ++VRLLR
Sbjct: 59 -----YKSGDP---AGYVK-KTLYEIPALVPAGLLALIE----GHLAGLGLFRLVRLLRF 105
Query: 158 GRVVRKLDRY 167
R++ + R
Sbjct: 106 LRILLIISRG 115
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane
protein; NMR {Aeropyrum pernix}
Length = 147
Score = 38.0 bits (88), Expect = 5e-04
Identities = 23/138 (16%), Positives = 52/138 (37%), Gaps = 18/138 (13%)
Query: 38 FKAIWDWVILCLTFYTAIMVPYNVAFKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFV 97
+ + + + I+V + V L +VD I+ +I + D +
Sbjct: 19 EHPLVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAY---- 74
Query: 98 GPGGEVVSDPKVIRMNYLKSWFVIDLLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRL 157
DP Y+K + ++ + +P + + G + ++VRLLR
Sbjct: 75 -----KSGDPA----GYVK-KTLYEIPALVPAGLLALIE----GHLAGLGLFRLVRLLRF 120
Query: 158 GRVVRKLDRYLEYGAAML 175
R++ + R ++ +A+
Sbjct: 121 LRILLIISRGSKFLSAIA 138
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM
protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB:
2a0l_A
Length = 223
Score = 36.8 bits (86), Expect = 0.002
Identities = 13/81 (16%), Positives = 34/81 (41%), Gaps = 11/81 (13%)
Query: 111 RMNYLKSWFVIDLLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEY 170
Y+K + ++ + +P + + G + ++VRLLR R++ + R ++
Sbjct: 66 PAGYVKK-TLYEIPALVPAGLLALIE----GHLAGLGLFRLVRLLRFLRILLIISRGSKF 120
Query: 171 GAAM------LILLLCFYMLV 185
+A+ + F ++
Sbjct: 121 LSAIADAADKIRFYHLFGAVM 141
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA;
3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Length = 355
Score = 34.4 bits (79), Expect = 0.015
Identities = 8/60 (13%), Positives = 15/60 (25%), Gaps = 13/60 (21%)
Query: 111 RMNYLKSWF-VIDLLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGRVVRKLDRYLE 169
+ ++ ID+L+ L L L ++ K R
Sbjct: 66 GVVRDRTPKIAIDVLAVLVP-----------LAAFLLDGSPDWSLYCAVWLL-KPLRDST 113
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA,
structure, membrane protein, metal transport; HET: PCA;
NMR {Streptomyces lividans} SCOP: f.14.1.1
Length = 155
Score = 29.0 bits (65), Expect = 0.67
Identities = 9/49 (18%), Positives = 15/49 (30%)
Query: 137 HDEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFYMLV 185
+G G L + + L R+V+ L +LV
Sbjct: 12 SGIEGRGRLIKHMPPMLSGLLARLVKLLLGRHGSALHWRAAGAATVLLV 60
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 2.1
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 9/33 (27%)
Query: 8 QMMSLSADVMPQYRQEAPKTPPHILLHYCAFKA 40
+ L A + Y A + P + A KA
Sbjct: 21 ALKKLQASLKL-Y---ADDSAPAL-----AIKA 44
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein
biosynthesis, RNA recognition motif, RNA binding domain,
RRM, RBD, RNP; NMR {Homo sapiens}
Length = 100
Score = 26.4 bits (59), Expect = 2.6
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 8/32 (25%)
Query: 127 LPYDVFNAFDHDEDGIGSLFSALKV--VRLLR 156
LPYDV E+ I F L + VRL R
Sbjct: 27 LPYDV------TEESIKEFFRGLNISAVRLPR 52
>3hfi_A Putative regulator; structural geonomics, PSI, MCSG, structural
genom protein structure initiative, midwest center for
structural genomics; 2.20A {Escherichia coli O6}
Length = 170
Score = 25.7 bits (57), Expect = 9.1
Identities = 6/64 (9%), Positives = 21/64 (32%), Gaps = 11/64 (17%)
Query: 125 SCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGRVVRKLD---------RYLEY--GAA 173
+ + ++ + +LF ++ + ++ + +L+ A
Sbjct: 71 NRINIELCPGIVEIDFNQHNLFPTIESLSKRKIRYSESRYAARLIGNERGHFLDISEDAP 130
Query: 174 MLIL 177
+L L
Sbjct: 131 VLHL 134
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas;
INPP5BA,phosphoinositide 5-phosphatase, inositol
signalling, phosphatase, magnesium; HET: PIF; 2.40A
{Homo sapiens} PDB: 3n9v_A
Length = 313
Score = 25.9 bits (57), Expect = 9.1
Identities = 7/39 (17%), Positives = 10/39 (25%)
Query: 4 SHWFQMMSLSADVMPQYRQEAPKTPPHILLHYCAFKAIW 42
W + DV QE + H + W
Sbjct: 27 RLWLSNGIQAPDVYCVGFQELDLSKEAFFFHDTPKEEEW 65
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.331 0.144 0.475
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,271,990
Number of extensions: 192614
Number of successful extensions: 600
Number of sequences better than 10.0: 1
Number of HSP's gapped: 570
Number of HSP's successfully gapped: 19
Length of query: 198
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 109
Effective length of database: 4,216,824
Effective search space: 459633816
Effective search space used: 459633816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.0 bits)