RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17886
         (198 letters)



>d2g9da1 c.56.5.7 (A:3-342) Succinylglutamate desuccinylase AstE
           {Vibrio cholerae [TaxId: 666]}
          Length = 340

 Score = 25.8 bits (56), Expect = 4.2
 Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 2/39 (5%)

Query: 136 DHDEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAM 174
            ++ + I  +F   KV    R   +V K++   E    +
Sbjct: 302 KNEGEAI--VFPNRKVAIGQRAALMVCKVNTRYEDDQLV 338


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.144    0.475 

Gapped
Lambda     K      H
   0.267   0.0548    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 813,181
Number of extensions: 36653
Number of successful extensions: 171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 11
Length of query: 198
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 117
Effective length of database: 1,295,466
Effective search space: 151569522
Effective search space used: 151569522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 50 (23.5 bits)