BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17890
(118 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P28159|SUH_DROME Suppressor of hairless protein OS=Drosophila melanogaster GN=Su(H)
PE=1 SV=1
Length = 594
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 72/92 (78%), Positives = 87/92 (94%)
Query: 26 DDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQ 85
++++LTR+AME+Y+R+R+DMVIVILHAKVAQKSYGNEKRFFCPPPCIYL+G GWR R E+
Sbjct: 101 EEKKLTRDAMEKYMRERNDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLFGSGWRRRYEE 160
Query: 86 LLREGESEQAAQLCAFIGIGNSDQDMQQLDLN 117
+L++GE EQ AQLCAFIGIG+SDQDMQQLDLN
Sbjct: 161 MLQQGEGEQGAQLCAFIGIGSSDQDMQQLDLN 192
>sp|Q91880|SUH_XENLA Suppressor of hairless protein homolog OS=Xenopus laevis GN=rbpj
PE=1 SV=1
Length = 501
Score = 147 bits (370), Expect = 3e-35, Method: Composition-based stats.
Identities = 63/93 (67%), Positives = 78/93 (83%)
Query: 24 RNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQ 83
R +RLTREAM YL++R D ++ILHAKVAQKSYGNEKRFFCPPPC+YL G GW+ ++
Sbjct: 26 RPQPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKK 85
Query: 84 EQLLREGESEQAAQLCAFIGIGNSDQDMQQLDL 116
EQ+ R+G SEQ +Q CAFIGIGNS+Q+MQQL+L
Sbjct: 86 EQMERDGCSEQESQPCAFIGIGNSEQEMQQLNL 118
>sp|Q5RFK6|SUH_PONAB Recombining binding protein suppressor of hairless OS=Pongo abelii
GN=RBPJ PE=2 SV=1
Length = 486
Score = 146 bits (368), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 64/102 (62%), Positives = 80/102 (78%)
Query: 15 GWVPHSLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYL 74
W+ R +RLT+EAM YL++R D ++ILHAKVAQKSYGNEKRFFCPPPC+YL
Sbjct: 2 AWIKRKFGERPPPKRLTKEAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYL 61
Query: 75 YGEGWRLRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDL 116
G GW+ ++EQ+ R+G SEQ +Q CAFIGIGNSDQ+MQQL+L
Sbjct: 62 MGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNL 103
>sp|Q06330|SUH_HUMAN Recombining binding protein suppressor of hairless OS=Homo sapiens
GN=RBPJ PE=1 SV=3
Length = 500
Score = 145 bits (365), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 65/99 (65%), Positives = 79/99 (79%)
Query: 18 PHSLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGE 77
P R +RLTREAM YL++R D ++ILHAKVAQKSYGNEKRFFCPPPC+YL G
Sbjct: 19 PGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGS 78
Query: 78 GWRLRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDL 116
GW+ ++EQ+ R+G SEQ +Q CAFIGIGNSDQ+MQQL+L
Sbjct: 79 GWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNL 117
>sp|P31266|SUH_MOUSE Recombining binding protein suppressor of hairless OS=Mus musculus
GN=Rbpj PE=1 SV=1
Length = 526
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 64/93 (68%), Positives = 78/93 (83%)
Query: 24 RNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQ 83
R +RLTREAM YL++R D ++ILHAKVAQKSYGNEKRFFCPPPC+YL G GW+ ++
Sbjct: 51 RPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKK 110
Query: 84 EQLLREGESEQAAQLCAFIGIGNSDQDMQQLDL 116
EQ+ R+G SEQ +Q CAFIGIGNSDQ+MQQL+L
Sbjct: 111 EQMERDGCSEQESQPCAFIGIGNSDQEMQQLNL 143
>sp|Q3SZ41|SUH_BOVIN Recombining binding protein suppressor of hairless OS=Bos taurus
GN=RBPJ PE=2 SV=1
Length = 487
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 64/93 (68%), Positives = 78/93 (83%)
Query: 24 RNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQ 83
R +RLTREAM YL++R D ++ILHAKVAQKSYGNEKRFFCPPPC+YL G GW+ ++
Sbjct: 12 RPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKK 71
Query: 84 EQLLREGESEQAAQLCAFIGIGNSDQDMQQLDL 116
EQ+ R+G SEQ +Q CAFIGIGNSDQ+MQQL+L
Sbjct: 72 EQMERDGCSEQESQPCAFIGIGNSDQEMQQLNL 104
>sp|O02019|SUH_HALRO Suppressor of hairless homolog OS=Halocynthia roretzi GN=RBP-JK
PE=2 SV=1
Length = 518
Score = 135 bits (340), Expect = 7e-32, Method: Composition-based stats.
Identities = 62/112 (55%), Positives = 81/112 (72%)
Query: 6 PSQNKVHYEGWVPHSLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRF 65
P+QN P S+ QRLTREAM +YLR+R+D ++ILHAKVAQKSYGNEKRF
Sbjct: 38 PNQNGGTSTSSKPRSVFENRPPQRLTREAMSKYLRERNDQTLIILHAKVAQKSYGNEKRF 97
Query: 66 FCPPPCIYLYGEGWRLRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLN 117
CPPPC+YL GW+ +Q+ L ++ +A Q+ AFIGIG+SDQ+MQQL+L+
Sbjct: 98 LCPPPCLYLMESGWKQKQQILEEADQAPEAGQVHAFIGIGSSDQEMQQLNLD 149
>sp|O76808|SUH_CIOIN Suppressor of hairless homolog OS=Ciona intestinalis GN=Su(H) PE=2
SV=1
Length = 554
Score = 126 bits (317), Expect = 3e-29, Method: Composition-based stats.
Identities = 59/98 (60%), Positives = 77/98 (78%)
Query: 20 SLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGW 79
SL + ++LTR+AM RYL+D +D +++LHAKVAQKSYGNEKRFFCPPPC+YL G GW
Sbjct: 46 SLREKYPPKKLTRDAMRRYLKDPNDQTLIVLHAKVAQKSYGNEKRFFCPPPCMYLLGNGW 105
Query: 80 RLRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLN 117
+ +Q+ L E S +A QL AFIGIG+S+Q+MQQL L+
Sbjct: 106 KRKQQILEEEEGSSEAGQLHAFIGIGSSEQEMQQLHLD 143
>sp|O08674|RBPJL_MOUSE Recombining binding protein suppressor of hairless-like protein
OS=Mus musculus GN=Rbpjl PE=1 SV=1
Length = 515
Score = 89.7 bits (221), Expect = 5e-18, Method: Composition-based stats.
Identities = 42/92 (45%), Positives = 60/92 (65%), Gaps = 7/92 (7%)
Query: 30 LTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLR--QEQLL 87
+ RE + L+ R + + ILHAKVAQKSYGNEKRFFCPPPC+YL G GWR++ Q+Q L
Sbjct: 50 ILREGVRTCLQQRCEQTVWILHAKVAQKSYGNEKRFFCPPPCVYLAGPGWRVKPMQDQAL 109
Query: 88 REGESEQAAQLCAFIGI---GNSDQDMQQLDL 116
+ E+ +C ++G+ S + Q+L+
Sbjct: 110 QSAET--GPTVCGYMGLDGASGSAPETQKLNF 139
>sp|Q9UBG7|RBPJL_HUMAN Recombining binding protein suppressor of hairless-like protein
OS=Homo sapiens GN=RBPJL PE=1 SV=3
Length = 517
Score = 87.0 bits (214), Expect = 3e-17, Method: Composition-based stats.
Identities = 39/90 (43%), Positives = 56/90 (62%), Gaps = 3/90 (3%)
Query: 30 LTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQLLRE 89
+ R + R L+ + + + ILHAKVAQKSYGNEKRFFCPPPC+YL G GWR++ Q
Sbjct: 52 ILRGGVRRCLQQQCEQTVRILHAKVAQKSYGNEKRFFCPPPCVYLSGPGWRVKPGQDQAH 111
Query: 90 GESEQAAQLCAFIGIGN---SDQDMQQLDL 116
E +C ++G+ + S + Q+L+
Sbjct: 112 QAGETGPTVCGYMGLDSASGSATETQKLNF 141
>sp|Q9Y1T5|SUH_DROSI Protein suppressor of hairless (Fragment) OS=Drosophila simulans
GN=Su(H) PE=3 SV=1
Length = 102
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 28/28 (100%)
Query: 26 DDQRLTREAMERYLRDRSDMVIVILHAK 53
++++LTR+AME+Y+R+R+DMVIVILHAK
Sbjct: 75 EEKKLTRDAMEKYMRERNDMVIVILHAK 102
>sp|O74954|CBF11_SCHPO Transcription factor cbf11 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=cbf11 PE=1 SV=1
Length = 613
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 51 HAKVAQKSYGNEKRFFCPPPCIYLYG 76
H+ V QKSYG+EKR+ CPPP +Y+ G
Sbjct: 184 HSSVIQKSYGSEKRYLCPPPMVYING 209
>sp|O74412|CBF12_SCHPO Transcription factor cbf12 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=cbf12 PE=2 SV=1
Length = 963
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 54 VAQKSYGNEKRFFCPPPCIYLYGEGW 79
+ QKSYG E+R+ CPP +YL G W
Sbjct: 480 LCQKSYGTERRYLCPPIVLYLLGTTW 505
>sp|O43734|CIKS_HUMAN Adapter protein CIKS OS=Homo sapiens GN=TRAF3IP2 PE=1 SV=3
Length = 574
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 35 MERYLRDRSDMVIVILHAKVAQKSYGNEKRF 65
MERYLRD++ M+IV + K Q G E +
Sbjct: 456 MERYLRDKTVMIIVAISPKYKQDVEGAESQL 486
>sp|D1C8C0|FTSH4_SPHTD ATP-dependent zinc metalloprotease FtsH 4 OS=Sphaerobacter
thermophilus (strain DSM 20745 / S 6022) GN=ftsh4 PE=3
SV=1
Length = 658
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 28 QRLTREAMER---YLRDRSDMVIVILHAKVAQKSYGNEK 63
QRL REAMER LR D + + A +A+++ G EK
Sbjct: 598 QRLLREAMERAEQLLRKYRDKLDALAEALIAEETIGQEK 636
>sp|P0AC01|FRLB_SHIFL Fructoselysine 6-phosphate deglycase OS=Shigella flexneri GN=frlB
PE=3 SV=1
Length = 340
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 17 VPHSLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQ 56
VP ND+ R T E +++ R+D VIVI +A+++Q
Sbjct: 259 VPFLFLLGNDESRHTTERAINFVKQRTDNVIVIDYAEISQ 298
>sp|P0AC00|FRLB_ECOLI Fructoselysine 6-phosphate deglycase OS=Escherichia coli (strain
K12) GN=frlB PE=4 SV=1
Length = 340
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 17 VPHSLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQ 56
VP ND+ R T E +++ R+D VIVI +A+++Q
Sbjct: 259 VPFLFLLGNDESRHTTERAINFVKQRTDNVIVIDYAEISQ 298
>sp|P0CP92|CWC27_CRYNJ Peptidyl-prolyl isomerase CWC27 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=CWC27 PE=3 SV=1
Length = 491
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 15 GWVPHSLHYRNDDQRLTREAMERY 38
GW+ H L ++ DD+ LTR A + Y
Sbjct: 431 GWLTHKLKFQVDDKELTRRAEDEY 454
>sp|P0CP93|CWC27_CRYNB Peptidyl-prolyl isomerase CWC27 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=CWC27 PE=3
SV=1
Length = 491
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 15 GWVPHSLHYRNDDQRLTREAMERY 38
GW+ H L ++ DD+ LTR A + Y
Sbjct: 431 GWLTHKLKFQVDDKELTRRAEDEY 454
>sp|Q8X844|FRLB_ECO57 Fructoselysine 6-phosphate deglycase OS=Escherichia coli O157:H7
GN=frlB PE=3 SV=2
Length = 340
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 17 VPHSLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQ 56
VP ND+ R T E +++ R+D VIVI +A ++Q
Sbjct: 259 VPFLFLLGNDESRHTTERAINFVKQRTDNVIVIDYAAISQ 298
>sp|C3NDW4|SRP54_SULIY Signal recognition particle 54 kDa protein OS=Sulfolobus islandicus
(strain Y.G.57.14 / Yellowstone #1) GN=srp54 PE=3 SV=1
Length = 447
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 22 HYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPP 70
H ++ +L E E Y + D VI+++ A + QK+Y RF P
Sbjct: 190 HGYGEETKLLEEMKEIYEALKPDDVILVIDASIGQKAYDLASRFHQASP 238
>sp|C3NHT9|SRP54_SULIN Signal recognition particle 54 kDa protein OS=Sulfolobus islandicus
(strain Y.N.15.51 / Yellowstone #2) GN=srp54 PE=3 SV=1
Length = 447
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 22 HYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPP 70
H ++ +L E E Y + D VI+++ A + QK+Y RF P
Sbjct: 190 HGYGEETKLLEEMKEIYEALKPDDVILVIDASIGQKAYDLASRFHQASP 238
>sp|C3MYM8|SRP54_SULIM Signal recognition particle 54 kDa protein OS=Sulfolobus islandicus
(strain M.14.25 / Kamchatka #1) GN=srp54 PE=3 SV=1
Length = 447
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 22 HYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPP 70
H ++ +L E E Y + D VI+++ A + QK+Y RF P
Sbjct: 190 HGYGEETKLLEEMKEIYEALKPDDVILVIDASIGQKAYDLASRFHQASP 238
>sp|C3MPN4|SRP54_SULIL Signal recognition particle 54 kDa protein OS=Sulfolobus islandicus
(strain L.S.2.15 / Lassen #1) GN=srp54 PE=3 SV=1
Length = 447
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 22 HYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPP 70
H ++ +L E E Y + D VI+++ A + QK+Y RF P
Sbjct: 190 HGYGEETKLLEEMKEIYEALKPDDVILVIDASIGQKAYDLASRFHQASP 238
>sp|C4KGX6|SRP54_SULIK Signal recognition particle 54 kDa protein OS=Sulfolobus islandicus
(strain M.16.4 / Kamchatka #3) GN=srp54 PE=3 SV=1
Length = 447
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 22 HYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPP 70
H ++ +L E E Y + D VI+++ A + QK+Y RF P
Sbjct: 190 HGYGEETKLLEEMKEIYEALKPDDVILVIDASIGQKAYDLASRFHQASP 238
>sp|C3N5B0|SRP54_SULIA Signal recognition particle 54 kDa protein OS=Sulfolobus islandicus
(strain M.16.27) GN=srp54 PE=3 SV=1
Length = 447
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 22 HYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPP 70
H ++ +L E E Y + D VI+++ A + QK+Y RF P
Sbjct: 190 HGYGEETKLLEEMKEIYEALKPDDVILVIDASIGQKAYDLASRFHQASP 238
>sp|Q97ZE7|SRP54_SULSO Signal recognition particle 54 kDa protein OS=Sulfolobus
solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 /
P2) GN=srp54 PE=1 SV=1
Length = 447
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 22 HYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPP 70
H ++ +L E E Y + D VI+++ A + QK+Y RF P
Sbjct: 190 HGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQASP 238
>sp|Q971S9|SRP54_SULTO Signal recognition particle 54 kDa protein OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=srp54 PE=3 SV=2
Length = 445
Score = 28.9 bits (63), Expect = 9.9, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 22 HYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPP 70
H ++ +L E Y + D VI+++ A + QK+Y RF P
Sbjct: 189 HGYGEEVKLLEEMKNMYSEIKPDEVILVIDASIGQKAYDLASRFHQASP 237
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,336,524
Number of Sequences: 539616
Number of extensions: 1636543
Number of successful extensions: 3648
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3621
Number of HSP's gapped (non-prelim): 28
length of query: 118
length of database: 191,569,459
effective HSP length: 85
effective length of query: 33
effective length of database: 145,702,099
effective search space: 4808169267
effective search space used: 4808169267
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)