Query psy17890
Match_columns 118
No_of_seqs 98 out of 100
Neff 2.9
Searched_HMMs 29240
Date Fri Aug 16 16:47:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17890.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17890hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iag_C Recombining binding pro 100.0 7.2E-43 2.5E-47 297.0 6.9 92 27-118 2-93 (422)
2 3brd_A LIN-12 and GLP-1 phenot 100.0 1.5E-38 5.2E-43 273.6 6.0 96 22-117 4-119 (477)
3 2jrw_A Cyclic extended PEP.1; 51.9 4.7 0.00016 22.6 0.8 16 58-73 10-25 (26)
4 1y74_B MLIN-2/CASK, peripheral 20.0 3.3 0.00011 24.7 -3.8 29 32-60 21-49 (50)
5 2zqe_A MUTS2 protein; alpha/be 18.7 84 0.0029 20.2 2.6 22 32-53 18-42 (83)
6 2i4r_A V-type ATP synthase sub 18.0 2.3E+02 0.008 19.0 5.6 42 31-77 41-88 (102)
7 1i27_A Transcription factor II 17.8 39 0.0014 22.7 0.9 15 27-41 7-21 (73)
8 1jql_B DNA polymerase III, del 16.8 77 0.0026 21.3 2.2 26 31-56 93-119 (140)
9 2cpg_A REPA protein, transcrip 16.2 82 0.0028 17.1 1.9 16 27-42 28-43 (45)
10 1env_A HIV-1 envelope protein 13.9 57 0.0019 23.7 0.9 12 34-45 73-84 (123)
No 1
>3iag_C Recombining binding protein suppressor of hairless; protein-DNA complex, signaling, transcription, notch, activator, alternative splicing; HET: XYL; 2.00A {Mus musculus} PDB: 3brg_C* 3nbn_A 2f8x_C 3v79_C*
Probab=100.00 E-value=7.2e-43 Score=297.03 Aligned_cols=92 Identities=68% Similarity=1.214 Sum_probs=89.6
Q ss_pred cchhhHHHHHHHHhcCCCeEEEEEehhhhhhhhcCcccccCCCcEEEEecCCchhhHHHHHhhccccccceeEEEEeecC
Q psy17890 27 DQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQLLREGESEQAAQLCAFIGIGN 106 (118)
Q Consensus 27 ~~~Ltr~~m~~yL~~~~~~~i~ilhakvaQKSYG~EkRf~cPPP~V~l~G~~w~~~~eq~~~~g~~e~~~q~cafiGIgs 106 (118)
+++||||+|++||++++|+||+||||||||||||||||||||||||||+|++|+.+++++++++++|+++++||||||||
T Consensus 2 ~~~l~r~~~~~yl~~~~e~tv~ilHakVAQKSYGnEKRFfCPPP~VyL~G~gW~~~~~~~~~~~~~~~~~~~~~~igi~~ 81 (422)
T 3iag_C 2 PKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGN 81 (422)
T ss_dssp CCCCCHHHHHHHHHHCCCEEEEEEEESEEECBCTTCCCCCSSCCEEEEESTHHHHHHHHHHHTTCCHHHHSEEEEEEESS
T ss_pred cccccHHHHHHHHhCcCceEEEEEehhhhhhccccccccCCCCCEEEEeCCCccccchhhcccccccCCCceEEEEecCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCCC
Q psy17890 107 SDQDMQQLDLNN 118 (118)
Q Consensus 107 s~qe~QqL~l~n 118 (118)
++||||||+|++
T Consensus 82 s~q~~q~l~~~~ 93 (422)
T 3iag_C 82 SDQEMQQLNLEG 93 (422)
T ss_dssp CSSCCEECCCTT
T ss_pred CcccccccccCC
Confidence 999999999973
No 2
>3brd_A LIN-12 and GLP-1 phenotype protein 1, isoform A; protein-DNA complex, signaling, transcription, notch; HET: DNA; 2.21A {Caenorhabditis elegans} SCOP: b.1.18.1 b.2.5.8 b.42.7.1 PDB: 2fo1_A 1ttu_A* 3brf_A*
Probab=100.00 E-value=1.5e-38 Score=273.61 Aligned_cols=96 Identities=50% Similarity=0.929 Sum_probs=81.2
Q ss_pred CCCCCcchhhHHHHHHHHhcC--CCeEEEEEehhhhhhhhcCcccccCCCcEEEEecCCchhhHHHHHhh----------
Q psy17890 22 HYRNDDQRLTREAMERYLRDR--SDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQLLRE---------- 89 (118)
Q Consensus 22 ~~~~e~~~Ltr~~m~~yL~~~--~~~~i~ilhakvaQKSYG~EkRf~cPPP~V~l~G~~w~~~~eq~~~~---------- 89 (118)
..++..++||||+|++||+++ .+++|+||||||||||||||||||||||||||+|++|+.+++++.+.
T Consensus 4 ~~~~~~~~~~~e~~~~yl~~~~~~~~tv~ilHakVaQKSYG~EKRFfCPPP~vyL~G~~W~~~~~~~~~~~~~~~~s~~~ 83 (477)
T 3brd_A 4 GSGDSVQSLTSDRMIDFLSNKEKYECVISIFHAKVAQKSYGNEKRFFCPPPCIYLIGQGWKLKKDRVAQLYKTLKASAQK 83 (477)
T ss_dssp -----CCCCCHHHHHHHHHSHHHHCEEEEEEEESEEECBCTTCCCCCSSCCEEEEESTHHHHHHHHHHHTTTTC------
T ss_pred CCCCCcchhhHHHHHHHhhcCCCCceEEEEeecchhhhccccccccCCCCCEEEEecCCccccccccccccccccccccc
Confidence 344556899999999999998 58999999999999999999999999999999999999998866542
Q ss_pred -------c-cccccceeEEEEeecCCccccccccCC
Q psy17890 90 -------G-ESEQAAQLCAFIGIGNSDQDMQQLDLN 117 (118)
Q Consensus 90 -------g-~~e~~~q~cafiGIgss~qe~QqL~l~ 117 (118)
. ..++++++|+|||||++++|+|+|||+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~gig~~~~e~q~L~~~ 119 (477)
T 3brd_A 84 DAAIENDPIHEQQATELVAYIGIGSDTSERQQLDFS 119 (477)
T ss_dssp -----------CCTTSEEEEEECSCTTSCCEECCC-
T ss_pred cccccCccccccccceeEEEeccCCchhhhhhcccc
Confidence 1 344689999999999999999999996
No 3
>2jrw_A Cyclic extended PEP.1; acetylcholine receptor, phage display, peptide cyclization, immune system; NMR {Synthetic}
Probab=51.94 E-value=4.7 Score=22.55 Aligned_cols=16 Identities=38% Similarity=0.934 Sum_probs=12.7
Q ss_pred hhcCcccccCCCcEEE
Q psy17890 58 SYGNEKRFFCPPPCIY 73 (118)
Q Consensus 58 SYG~EkRf~cPPP~V~ 73 (118)
.|=+|+.|-.||||..
T Consensus 10 nyfserpyhppppc~~ 25 (26)
T 2jrw_A 10 NYFSERPYHPPPPCXX 25 (26)
T ss_dssp SSCCSSSCCSCSCC--
T ss_pred hhcccCCCCCCCCCCC
Confidence 5778999999999963
No 4
>1y74_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain, scaffold protein, protein assembly, cell polarity, transport protein; NMR {Mus musculus} SCOP: a.194.1.1 PDB: 1zl8_B
Probab=19.97 E-value=3.3 Score=24.73 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=22.9
Q ss_pred HHHHHHHHhcCCCeEEEEEehhhhhhhhc
Q psy17890 32 REAMERYLRDRSDMVIVILHAKVAQKSYG 60 (118)
Q Consensus 32 r~~m~~yL~~~~~~~i~ilhakvaQKSYG 60 (118)
...+.+.|..+.=+.++-.|-.||||.|+
T Consensus 21 ~~EL~~lL~~PHfqaLl~ahD~Va~~~y~ 49 (50)
T 1y74_B 21 AKELKRILTQPHFMALLQTHDVVAHEVYS 49 (50)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHhc
Confidence 34566777777767778889999999996
No 5
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=18.69 E-value=84 Score=20.21 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=16.9
Q ss_pred HHHHHHHHhc---CCCeEEEEEehh
Q psy17890 32 REAMERYLRD---RSDMVIVILHAK 53 (118)
Q Consensus 32 r~~m~~yL~~---~~~~~i~ilhak 53 (118)
++.+.+||.+ .+...|.|.|.|
T Consensus 18 ~~~l~~fl~~a~~~g~~~v~IIHGk 42 (83)
T 2zqe_A 18 LLEVDQALEEARALGLSTLRLLHGK 42 (83)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCS
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECC
Confidence 5678888874 456789999986
No 6
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=17.95 E-value=2.3e+02 Score=18.97 Aligned_cols=42 Identities=29% Similarity=0.366 Sum_probs=31.5
Q ss_pred hHHHHHHHHhcCCCeEEEEEehhhhhh------hhcCcccccCCCcEEEEecC
Q psy17890 31 TREAMERYLRDRSDMVIVILHAKVAQK------SYGNEKRFFCPPPCIYLYGE 77 (118)
Q Consensus 31 tr~~m~~yL~~~~~~~i~ilhakvaQK------SYG~EkRf~cPPP~V~l~G~ 77 (118)
.+++++++++ +.+..|++++-++|.+ .|-.++ +-|.|..+.+
T Consensus 41 ~~~~~~~l~~-~~digIIlIte~ia~~i~~~i~~~~~~~----~~P~IieIPs 88 (102)
T 2i4r_A 41 IVKAVEDVLK-RDDVGVVIMKQEYLKKLPPVLRREIDEK----VEPTFVSVGG 88 (102)
T ss_dssp HHHHHHHHHH-CSSEEEEEEEGGGSTTSCHHHHTTTTTC----CSSEEEEEC-
T ss_pred HHHHHHHHhh-CCCeEEEEEeHHHHHHHHHHHHHHHhCC----CccEEEEECC
Confidence 4677888776 4679999999999988 454443 6789988875
No 7
>1i27_A Transcription factor IIF; general transcription factor, RAP74, RAP30, TFIIF, RNA polymerase II, winged-helix domain; 1.02A {Homo sapiens} SCOP: a.4.5.30 PDB: 1j2x_A 2k7l_A*
Probab=17.85 E-value=39 Score=22.67 Aligned_cols=15 Identities=40% Similarity=0.722 Sum_probs=12.4
Q ss_pred cchhhHHHHHHHHhc
Q psy17890 27 DQRLTREAMERYLRD 41 (118)
Q Consensus 27 ~~~Ltr~~m~~yL~~ 41 (118)
...+|.|+||+||..
T Consensus 7 ~~~iTEe~VrryL~r 21 (73)
T 1i27_A 7 DVQVTEDAVRRYLTR 21 (73)
T ss_dssp CSSCCHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHc
Confidence 456899999999983
No 8
>1jql_B DNA polymerase III, delta subunit; processivity clamp, clamp loader, DNA replication, AAA+ ATPase, transferase; HET: DNA; 2.50A {Escherichia coli} SCOP: c.37.1.20
Probab=16.84 E-value=77 Score=21.29 Aligned_cols=26 Identities=12% Similarity=0.209 Sum_probs=16.6
Q ss_pred hHHHHHHHHhcCC-CeEEEEEehhhhh
Q psy17890 31 TREAMERYLRDRS-DMVIVILHAKVAQ 56 (118)
Q Consensus 31 tr~~m~~yL~~~~-~~~i~ilhakvaQ 56 (118)
..+++.+|+.+.+ +.++++.|.++.-
T Consensus 93 ~~~~L~~yl~~p~~~~~lvi~~~kld~ 119 (140)
T 1jql_B 93 INEQLLTLTGLLHDDLLLIVRGNKLSK 119 (140)
T ss_dssp HHHHHHHHHHHCCSSCCEEEECSSCCT
T ss_pred HHHHHHHHHhcCCCCEEEEEEeCCcCh
Confidence 3567888888654 4555555666654
No 9
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=16.23 E-value=82 Score=17.07 Aligned_cols=16 Identities=19% Similarity=0.403 Sum_probs=13.0
Q ss_pred cchhhHHHHHHHHhcC
Q psy17890 27 DQRLTREAMERYLRDR 42 (118)
Q Consensus 27 ~~~Ltr~~m~~yL~~~ 42 (118)
...+.+++++.||...
T Consensus 28 rS~~ir~ai~~~l~~~ 43 (45)
T 2cpg_A 28 KSAMISVALENYKKGQ 43 (45)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHc
Confidence 4568899999999764
No 10
>1env_A HIV-1 envelope protein chimera consisting of A FR GCN4 zipper cloned N-terminal TO...; viral fusion, coat protein, viral protein; 2.60A {Saccharomyces cerevisiae} SCOP: h.3.2.1 PDB: 1fav_A*
Probab=13.91 E-value=57 Score=23.73 Aligned_cols=12 Identities=58% Similarity=1.121 Sum_probs=6.4
Q ss_pred HHHHHHhcCCCe
Q psy17890 34 AMERYLRDRSDM 45 (118)
Q Consensus 34 ~m~~yL~~~~~~ 45 (118)
++++||+|+++|
T Consensus 73 AvEryLkDQ~Nm 84 (123)
T 1env_A 73 AVERYLKDQNNM 84 (123)
T ss_dssp HHHHHHC-----
T ss_pred hhhhcccCCCCC
Confidence 789999988433
Done!